Citrus Sinensis ID: 030113
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 183 | 2.2.26 [Sep-21-2011] | |||||||
| Q55AD9 | 183 | ADP-ribosylation factor-l | yes | no | 0.972 | 0.972 | 0.607 | 4e-62 | |
| P51646 | 179 | ADP-ribosylation factor-l | yes | no | 0.961 | 0.983 | 0.604 | 6e-60 | |
| Q9D4P0 | 179 | ADP-ribosylation factor-l | yes | no | 0.961 | 0.983 | 0.593 | 7e-60 | |
| Q96KC2 | 179 | ADP-ribosylation factor-l | yes | no | 0.961 | 0.983 | 0.593 | 7e-60 | |
| Q9Y689 | 179 | ADP-ribosylation factor-l | no | no | 0.961 | 0.983 | 0.604 | 7e-60 | |
| Q80ZU0 | 179 | ADP-ribosylation factor-l | no | no | 0.961 | 0.983 | 0.604 | 2e-59 | |
| Q2KJ96 | 179 | ADP-ribosylation factor-l | yes | no | 0.961 | 0.983 | 0.604 | 2e-59 | |
| P91924 | 183 | ADP-ribosylation factor O | N/A | no | 0.989 | 0.989 | 0.524 | 3e-53 | |
| Q6P068 | 179 | ADP-ribosylation factor-l | no | no | 0.978 | 1.0 | 0.544 | 3e-53 | |
| P0CM16 | 182 | ADP-ribosylation factor O | yes | no | 0.994 | 1.0 | 0.532 | 3e-53 |
| >sp|Q55AD9|ARL5_DICDI ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 237 bits (604), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 143/181 (79%), Gaps = 3/181 (1%)
Query: 1 MGALVSKF---WFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELV 57
MG+ +S F W F +YK+IIVGL+ AGKTTTLYKL L EVV+T PTVGSN+EE V
Sbjct: 1 MGSSLSIFASIWNRFFNNAEYKVIIVGLNAAGKTTTLYKLLLDEVVSTTPTVGSNLEEFV 60
Query: 58 YKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQ 117
Y+NIR WD+GGQ+ LR++W YY T AVI+VIDSTDRAR++++K+ELF++L HE+L+
Sbjct: 61 YRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLK 120
Query: 118 HSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
S++LI+ANKQDLKDAM+P E++ LSLHSIK+HD+HIQAC ALTG GL GL+W+ +
Sbjct: 121 KSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDWLVSHI 180
Query: 178 T 178
Sbjct: 181 N 181
|
May bind and exchange GTP and GDP. Dictyostelium discoideum (taxid: 44689) |
| >sp|P51646|ARL5A_RAT ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 107/177 (60%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
RF WD+GGQE LR+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+LIFANKQD+K+ MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
|
Lacks ADP-ribosylation enhancing activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q9D4P0|ARL5B_MOUSE ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 105/177 (59%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG + +K W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V KN
Sbjct: 1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD+GGQE LR+SW TYY T +I+V+DS DR R++I K+EL+R+L HEDL+ +
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
VLIFANKQD+K MT AEI+ L+L SIK+H WHIQ+C ALTG+GL GLEW++ R+
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
|
Binds and exchanges GTP and GDP. Mus musculus (taxid: 10090) |
| >sp|Q96KC2|ARL5B_HUMAN ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 105/177 (59%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG + +K W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V KN
Sbjct: 1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD+GGQE LR+SW TYY T +I+V+DS DR R++I K+EL+R+L HEDL+ +
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
VLIFANKQD+K MT AEI+ L+L SIK+H WHIQ+C ALTG+GL GLEW++ R+
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
|
Binds and exchanges GTP and GDP. Homo sapiens (taxid: 9606) |
| >sp|Q9Y689|ARL5A_HUMAN ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 107/177 (60%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
RF WD+GGQE LR+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+LIFANKQD+K+ MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
|
Lacks ADP-ribosylation enhancing activity. Homo sapiens (taxid: 9606) |
| >sp|Q80ZU0|ARL5A_MOUSE ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/177 (60%), Positives = 135/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
RF WD+GGQE LR SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ +
Sbjct: 60 TRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+LIFANKQD+K+ MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
|
Lacks ADP-ribosylation enhancing activity. Mus musculus (taxid: 10090) |
| >sp|Q2KJ96|ARL5A_BOVIN ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/177 (60%), Positives = 135/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
RF WD+GGQE LR+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+LIFANKQD+K MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
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Lacks ADP-ribosylation enhancing activity. Bos taurus (taxid: 9913) |
| >sp|P91924|ARF_DUGJA ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 132/181 (72%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG LV+ LF K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKN
Sbjct: 1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+++R W Y++ T +I V+DS DR R++ ++EL R+L ++L+ +V
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQDL +AM PAEITD L LHS++N W+IQA A +GDGL +GL+W+S + +
Sbjct: 121 LLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 180
Query: 181 A 181
+
Sbjct: 181 S 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Dugesia japonica (taxid: 6161) |
| >sp|Q6P068|ARL5C_MOUSE ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 131/180 (72%), Gaps = 1/180 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L++K +F +++K+IIVGLDNAGKTT LY+ EVV T T+GSNVEE+V +
Sbjct: 1 MGQLIAKL-MRIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRK 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD+GGQE LR++W TYY VI+VIDSTDR R+ ++EL+++L HE LQ++
Sbjct: 60 THFLMWDLGGQEALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNAS 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
VLIFANKQD+KD+MT AEI+ L+L +IK+H WHIQ C ALTG+GL GL+W+ + T
Sbjct: 120 VLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCCALTGEGLPAGLQWMQAQATAN 179
|
Binds and exchanges GTP and GDP. Mus musculus (taxid: 10090) |
| >sp|P0CM16|ARF_CRYNJ ADP-ribosylation factor OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ARF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/182 (53%), Positives = 131/182 (71%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG VSK LF K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKN
Sbjct: 1 MGLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+++R W Y++ T +I V+DS DR RI+ ++EL R+L ++L+ ++
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDAL 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQDL +AM AEITD L LHS++ W+IQA A +GDGL +GLEW+S + K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRK 180
Query: 181 AP 182
+P
Sbjct: 181 SP 182
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 183 | ||||||
| 225432850 | 183 | PREDICTED: ADP-ribosylation factor-like | 1.0 | 1.0 | 0.901 | 6e-95 | |
| 255552001 | 183 | ADP-ribosylation factor, putative [Ricin | 1.0 | 1.0 | 0.890 | 2e-94 | |
| 449504125 | 204 | PREDICTED: ADP-ribosylation factor-like | 1.0 | 0.897 | 0.890 | 3e-94 | |
| 449432644 | 183 | PREDICTED: ADP-ribosylation factor-like | 1.0 | 1.0 | 0.890 | 5e-94 | |
| 224136978 | 183 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.890 | 6e-94 | |
| 224120048 | 183 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.896 | 9e-94 | |
| 351722799 | 183 | uncharacterized protein LOC100526848 [Gl | 1.0 | 1.0 | 0.868 | 5e-93 | |
| 351723515 | 183 | uncharacterized protein LOC100527908 [Gl | 1.0 | 1.0 | 0.868 | 5e-93 | |
| 356576553 | 183 | PREDICTED: ADP-ribosylation factor-like | 1.0 | 1.0 | 0.863 | 7e-93 | |
| 388513261 | 181 | unknown [Medicago truncatula] | 0.989 | 1.0 | 0.872 | 6e-92 |
| >gi|225432850|ref|XP_002283837.1| PREDICTED: ADP-ribosylation factor-like protein 5 [Vitis vinifera] gi|297737135|emb|CBI26336.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 351 bits (901), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 165/183 (90%), Positives = 176/183 (96%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA VSKFWFMLFP K+YKI++VGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN
Sbjct: 1 MGAFVSKFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQERLRTSWATYYRGTHAVIVVIDSTDRARI+IMKDELFRLL H+DLQ+SV
Sbjct: 61 IRFEVWDLGGQERLRTSWATYYRGTHAVIVVIDSTDRARITIMKDELFRLLQHDDLQNSV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQD+KDAMTPAEITDALSLHSIKNHDWHIQAC ALTGDGL DGL WI+QRVTGK
Sbjct: 121 ILVFANKQDIKDAMTPAEITDALSLHSIKNHDWHIQACCALTGDGLYDGLGWIAQRVTGK 180
Query: 181 APS 183
APS
Sbjct: 181 APS 183
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552001|ref|XP_002517045.1| ADP-ribosylation factor, putative [Ricinus communis] gi|223543680|gb|EEF45208.1| ADP-ribosylation factor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/183 (89%), Positives = 174/183 (95%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG +S+FWFMLFP K+YKI++VGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN
Sbjct: 1 MGGFISRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQ+RLRTSWATYYRGTHAVI VIDSTDRARISIMKDELFRLLGHEDLQHSV
Sbjct: 61 IRFEVWDLGGQDRLRTSWATYYRGTHAVIAVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+ ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQAC ALTG+GL DGL WI+QRVTGK
Sbjct: 121 ILVLANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACCALTGEGLYDGLGWIAQRVTGK 180
Query: 181 APS 183
APS
Sbjct: 181 APS 183
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449504125|ref|XP_004162259.1| PREDICTED: ADP-ribosylation factor-like protein 5-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 163/183 (89%), Positives = 174/183 (95%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA +S+FWFMLFP K+YKI++VGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN
Sbjct: 22 MGAFISRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 81
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQERLRTSWATYYRGTHAVI VIDSTDRARI+IMKDELFRLLGHEDLQ +V
Sbjct: 82 IRFEVWDLGGQERLRTSWATYYRGTHAVIAVIDSTDRARITIMKDELFRLLGHEDLQQAV 141
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
VL+FANKQDLKDAMTP EITDALSLHSIKNHDWHIQACSALTGDGL DGL WI+Q+VTGK
Sbjct: 142 VLVFANKQDLKDAMTPVEITDALSLHSIKNHDWHIQACSALTGDGLYDGLGWIAQQVTGK 201
Query: 181 APS 183
A S
Sbjct: 202 ATS 204
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432644|ref|XP_004134109.1| PREDICTED: ADP-ribosylation factor-like protein 5-like isoform 1 [Cucumis sativus] gi|449432646|ref|XP_004134110.1| PREDICTED: ADP-ribosylation factor-like protein 5-like isoform 2 [Cucumis sativus] gi|449504128|ref|XP_004162260.1| PREDICTED: ADP-ribosylation factor-like protein 5-like isoform 2 [Cucumis sativus] gi|449504132|ref|XP_004162261.1| PREDICTED: ADP-ribosylation factor-like protein 5-like isoform 3 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 163/183 (89%), Positives = 174/183 (95%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA +S+FWFMLFP K+YKI++VGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN
Sbjct: 1 MGAFISRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQERLRTSWATYYRGTHAVI VIDSTDRARI+IMKDELFRLLGHEDLQ +V
Sbjct: 61 IRFEVWDLGGQERLRTSWATYYRGTHAVIAVIDSTDRARITIMKDELFRLLGHEDLQQAV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
VL+FANKQDLKDAMTP EITDALSLHSIKNHDWHIQACSALTGDGL DGL WI+Q+VTGK
Sbjct: 121 VLVFANKQDLKDAMTPVEITDALSLHSIKNHDWHIQACSALTGDGLYDGLGWIAQQVTGK 180
Query: 181 APS 183
A S
Sbjct: 181 ATS 183
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136978|ref|XP_002322463.1| predicted protein [Populus trichocarpa] gi|118487070|gb|ABK95365.1| unknown [Populus trichocarpa] gi|222869459|gb|EEF06590.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 348 bits (893), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 163/183 (89%), Positives = 174/183 (95%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA S+FWFMLFP K+YKI++VGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN
Sbjct: 1 MGAFASRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQ+RLRTSWATYYRGTHAVI VIDSTDR RISIMKDE+FRLLGH+DLQHSV
Sbjct: 61 IRFEVWDLGGQDRLRTSWATYYRGTHAVIAVIDSTDRDRISIMKDEIFRLLGHDDLQHSV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQDLKDAMTPAEITDALSLHSIKNHDWHIQAC ALTGDGL DGL WI+QRVTGK
Sbjct: 121 ILVFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACCALTGDGLHDGLGWIAQRVTGK 180
Query: 181 APS 183
APS
Sbjct: 181 APS 183
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120048|ref|XP_002318229.1| predicted protein [Populus trichocarpa] gi|222858902|gb|EEE96449.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 347 bits (891), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 164/183 (89%), Positives = 173/183 (94%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA VS+FWFMLFP +YKI++VGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN
Sbjct: 1 MGAFVSRFWFMLFPANEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQ+RLRTSWATYYRGTHAVIVVIDSTDR RISIMKDELF LLGH+DLQHSV
Sbjct: 61 IRFEVWDLGGQDRLRTSWATYYRGTHAVIVVIDSTDRDRISIMKDELFMLLGHDDLQHSV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
VL+FANKQDLKDAMTPAEI DALSLHSIKNHDWHIQAC ALTGDGL DGL WI+QRVTGK
Sbjct: 121 VLVFANKQDLKDAMTPAEIADALSLHSIKNHDWHIQACCALTGDGLYDGLGWIAQRVTGK 180
Query: 181 APS 183
APS
Sbjct: 181 APS 183
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351722799|ref|NP_001234953.1| uncharacterized protein LOC100526848 [Glycine max] gi|255630980|gb|ACU15854.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 159/183 (86%), Positives = 177/183 (96%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA++S+FWFMLFP K+YKI++VGLDNAGKTTTLYKLHLGEVVTT+PTVGSNVEELVYKN
Sbjct: 1 MGAMMSRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTNPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQERLRTSWATYYRGTHAVI VIDS+DRARISI+KDELFRLLGHEDLQHSV
Sbjct: 61 IRFEVWDLGGQERLRTSWATYYRGTHAVIAVIDSSDRARISIIKDELFRLLGHEDLQHSV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQD+KDAMTPAEITDALSLHSIK+HDWHIQAC AL+G+GL DGL WI+QRVTGK
Sbjct: 121 ILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQACCALSGEGLYDGLGWIAQRVTGK 180
Query: 181 APS 183
AP+
Sbjct: 181 APT 183
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351723515|ref|NP_001235490.1| uncharacterized protein LOC100527908 [Glycine max] gi|255633524|gb|ACU17120.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 345 bits (884), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 159/183 (86%), Positives = 177/183 (96%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA++S+FWFMLFP K+YKI++VGLDNAGKTTTLYKLHLGEVVTT+PTVGSNVEELVYKN
Sbjct: 1 MGAMMSRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTNPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQERLRTSWATYYRGTHAVIVVIDS+DRARISI+KDELFRLLGHEDLQHSV
Sbjct: 61 IRFEVWDLGGQERLRTSWATYYRGTHAVIVVIDSSDRARISIIKDELFRLLGHEDLQHSV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQD+KDAMTPAEITD LSLHSIK+HDWHIQAC AL+G+GL DGL WI+QRVTGK
Sbjct: 121 ILVFANKQDIKDAMTPAEITDVLSLHSIKDHDWHIQACCALSGEGLYDGLGWIAQRVTGK 180
Query: 181 APS 183
AP+
Sbjct: 181 APT 183
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576553|ref|XP_003556395.1| PREDICTED: ADP-ribosylation factor-like protein 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 158/183 (86%), Positives = 177/183 (96%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA++S+FWF+LFP K+YKI++VGLDNAGKTTTLYKLHLGEVVTT+PTVGSNVEELVYKN
Sbjct: 1 MGAMISRFWFLLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTNPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQERLRTSWATYYRGTHAVI VIDS+DRARISI+KDELFRLLGHEDLQHSV
Sbjct: 61 IRFEVWDLGGQERLRTSWATYYRGTHAVIAVIDSSDRARISIIKDELFRLLGHEDLQHSV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQD+KDAMTPAEITDALSLHSIK+HDWHIQAC AL+G+GL DGL WI+QRVTGK
Sbjct: 121 ILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQACCALSGEGLYDGLGWIAQRVTGK 180
Query: 181 APS 183
AP+
Sbjct: 181 APT 183
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388513261|gb|AFK44692.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 158/181 (87%), Positives = 175/181 (96%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA++S+FWFMLFP K+YKI++VGLDNAGKTTTLYKLHLGEVVTT+PTVGSNVEELVYKN
Sbjct: 1 MGAMMSRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTNPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQERLRTSWATYYRGTHAVI VIDS+DRARIS+MKDELFRLLGHEDLQHSV
Sbjct: 61 IRFEVWDLGGQERLRTSWATYYRGTHAVIAVIDSSDRARISLMKDELFRLLGHEDLQHSV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQD+KDAMTPAEITDALSLHSIK+HDWHIQACSA++GDGL DGL WI+ RVTGK
Sbjct: 121 ILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQACSAISGDGLYDGLGWIAGRVTGK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 183 | ||||||
| TAIR|locus:2084568 | 183 | ARFC1 "ADP-ribosylation factor | 1.0 | 1.0 | 0.857 | 3.8e-85 | |
| DICTYBASE|DDB_G0271942 | 183 | arl5 "ARF-like protein" [Dicty | 0.967 | 0.967 | 0.611 | 7.5e-57 | |
| UNIPROTKB|E1BQL0 | 179 | ARL5B "Uncharacterized protein | 0.961 | 0.983 | 0.598 | 1.4e-55 | |
| UNIPROTKB|Q9Y689 | 179 | ARL5A "ADP-ribosylation factor | 0.961 | 0.983 | 0.604 | 1.8e-55 | |
| RGD|621327 | 179 | Arl5a "ADP-ribosylation factor | 0.961 | 0.983 | 0.604 | 1.8e-55 | |
| FB|FBgn0035866 | 179 | CG7197 [Drosophila melanogaste | 0.978 | 1.0 | 0.577 | 2.9e-55 | |
| UNIPROTKB|E1BPV3 | 179 | ARL5B "Uncharacterized protein | 0.961 | 0.983 | 0.593 | 2.9e-55 | |
| UNIPROTKB|E2RIG8 | 180 | ARL5B "Uncharacterized protein | 0.961 | 0.977 | 0.593 | 2.9e-55 | |
| UNIPROTKB|Q96KC2 | 179 | ARL5B "ADP-ribosylation factor | 0.961 | 0.983 | 0.593 | 2.9e-55 | |
| UNIPROTKB|I3L9B0 | 180 | ARL5B "Uncharacterized protein | 0.961 | 0.977 | 0.593 | 2.9e-55 |
| TAIR|locus:2084568 ARFC1 "ADP-ribosylation factor C1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 157/183 (85%), Positives = 173/183 (94%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MGA +S+FWFM+FP K+YKI++VGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN
Sbjct: 1 MGAFMSRFWFMMFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
IRFE WD+GGQ+RLRTSWATYYRGTHAVIVVIDSTDRARIS MKDEL RLLGHEDLQ+SV
Sbjct: 61 IRFEVWDLGGQDRLRTSWATYYRGTHAVIVVIDSTDRARISFMKDELARLLGHEDLQNSV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQDLKDAMTPAEITDAL+LHSIKNHDWHIQA A+TG+GL DGL WI+Q+VTGK
Sbjct: 121 ILVFANKQDLKDAMTPAEITDALNLHSIKNHDWHIQASCAVTGEGLYDGLGWIAQKVTGK 180
Query: 181 APS 183
A S
Sbjct: 181 ATS 183
|
|
| DICTYBASE|DDB_G0271942 arl5 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 110/180 (61%), Positives = 143/180 (79%)
Query: 1 MGALVSKF---WFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELV 57
MG+ +S F W F +YK+IIVGL+ AGKTTTLYKL L EVV+T PTVGSN+EE V
Sbjct: 1 MGSSLSIFASIWNRFFNNAEYKVIIVGLNAAGKTTTLYKLLLDEVVSTTPTVGSNLEEFV 60
Query: 58 YKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQ 117
Y+NIR WD+GGQ+ LR++W YY T AVI+VIDSTDRAR++++K+ELF++L HE+L+
Sbjct: 61 YRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLK 120
Query: 118 HSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
S++LI+ANKQDLKDAM+P E++ LSLHSIK+HD+HIQAC ALTG GL GL+W+ +
Sbjct: 121 KSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDWLVSHI 180
|
|
| UNIPROTKB|E1BQL0 ARL5B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 106/177 (59%), Positives = 136/177 (76%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG + +K W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V KN
Sbjct: 1 MGLIFAKLW-SLFGNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD+GGQE LR+SW TYY T +I+V+DS DR R+SI K+EL+R+L HEDL+ +
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLSITKEELYRMLAHEDLRKAA 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
VLIFANKQD+K MT AEI+ L+L SIK+H WHIQ+C ALTG+GL GLEW++ R+
Sbjct: 120 VLIFANKQDMKGCMTAAEISAYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
|
|
| UNIPROTKB|Q9Y689 ARL5A "ADP-ribosylation factor-like protein 5A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 107/177 (60%), Positives = 136/177 (76%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
RF WD+GGQE LR+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+LIFANKQD+K+ MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
|
|
| RGD|621327 Arl5a "ADP-ribosylation factor-like 5A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 107/177 (60%), Positives = 136/177 (76%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
RF WD+GGQE LR+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+LIFANKQD+K+ MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
|
|
| FB|FBgn0035866 CG7197 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 104/180 (57%), Positives = 139/180 (77%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L+S+ W M F +++K+++VGLDNAGKTT LY+ + EVV T PT+GSNVEE+V++N
Sbjct: 1 MGLLLSRLWRM-FGNEEHKLVMVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEVVWRN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WD+GGQ+ LR +W+TYY T VI+VIDSTDR R+++ ++EL+R+L HEDL +
Sbjct: 60 IHFLVWDLGGQQSLRAAWSTYYTNTELVIMVIDSTDRERLAVTREELYRMLQHEDLSKAS 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L++ANKQDLK +M+ AEI+ L L SIK H WHIQAC ALTG+GL GLEWI QR+ K
Sbjct: 120 LLVYANKQDLKGSMSAAEISRQLDLTSIKKHQWHIQACCALTGEGLYQGLEWIVQRIKNK 179
|
|
| UNIPROTKB|E1BPV3 ARL5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 105/177 (59%), Positives = 136/177 (76%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG + +K W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V KN
Sbjct: 1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD+GGQE LR+SW TYY T +I+V+DS DR R++I K+EL+R+L HEDL+ +
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
VLIFANKQD+K MT AEI+ L+L SIK+H WHIQ+C ALTG+GL GLEW++ R+
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
|
|
| UNIPROTKB|E2RIG8 ARL5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 105/177 (59%), Positives = 136/177 (76%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG + +K W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V KN
Sbjct: 2 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD+GGQE LR+SW TYY T +I+V+DS DR R++I K+EL+R+L HEDL+ +
Sbjct: 61 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
VLIFANKQD+K MT AEI+ L+L SIK+H WHIQ+C ALTG+GL GLEW++ R+
Sbjct: 121 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 177
|
|
| UNIPROTKB|Q96KC2 ARL5B "ADP-ribosylation factor-like protein 5B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 105/177 (59%), Positives = 136/177 (76%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG + +K W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V KN
Sbjct: 1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD+GGQE LR+SW TYY T +I+V+DS DR R++I K+EL+R+L HEDL+ +
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
VLIFANKQD+K MT AEI+ L+L SIK+H WHIQ+C ALTG+GL GLEW++ R+
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
|
|
| UNIPROTKB|I3L9B0 ARL5B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 105/177 (59%), Positives = 136/177 (76%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG + +K W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V KN
Sbjct: 2 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD+GGQE LR+SW TYY T +I+V+DS DR R++I K+EL+R+L HEDL+ +
Sbjct: 61 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
VLIFANKQD+K MT AEI+ L+L SIK+H WHIQ+C ALTG+GL GLEW++ R+
Sbjct: 121 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 177
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P51646 | ARL5A_RAT | No assigned EC number | 0.6045 | 0.9617 | 0.9832 | yes | no |
| O48920 | ARF_VIGUN | No assigned EC number | 0.5193 | 0.9890 | 1.0 | N/A | no |
| P51643 | ARF1_XENLA | No assigned EC number | 0.5055 | 0.9836 | 0.9944 | N/A | no |
| P91924 | ARF_DUGJA | No assigned EC number | 0.5248 | 0.9890 | 0.9890 | N/A | no |
| P19146 | ARF2_YEAST | No assigned EC number | 0.5359 | 0.9890 | 1.0 | yes | no |
| Q7RVM2 | ARF_NEUCR | No assigned EC number | 0.5111 | 0.9836 | 0.9729 | N/A | no |
| P61210 | ARF1_LOCMI | No assigned EC number | 0.5310 | 0.9672 | 0.9725 | N/A | no |
| Q2KJ96 | ARL5A_BOVIN | No assigned EC number | 0.6045 | 0.9617 | 0.9832 | yes | no |
| P22274 | ARF_CANAL | No assigned EC number | 0.5254 | 0.9672 | 0.9888 | N/A | no |
| P49076 | ARF_MAIZE | No assigned EC number | 0.5082 | 0.9890 | 1.0 | N/A | no |
| P11076 | ARF1_YEAST | No assigned EC number | 0.5485 | 0.9562 | 0.9668 | yes | no |
| P0CM17 | ARF_CRYNB | No assigned EC number | 0.5329 | 0.9945 | 1.0 | N/A | no |
| P0CM16 | ARF_CRYNJ | No assigned EC number | 0.5329 | 0.9945 | 1.0 | yes | no |
| Q9D4P0 | ARL5B_MOUSE | No assigned EC number | 0.5932 | 0.9617 | 0.9832 | yes | no |
| P51821 | ARF1_CHLRE | No assigned EC number | 0.5111 | 0.9836 | 0.9944 | N/A | no |
| Q75A26 | ARF_ASHGO | No assigned EC number | 0.5248 | 0.9890 | 1.0 | yes | no |
| Q61LA8 | ARF12_CAEBR | No assigned EC number | 0.5027 | 0.9890 | 1.0 | N/A | no |
| Q10943 | ARF12_CAEEL | No assigned EC number | 0.4972 | 0.9890 | 1.0 | yes | no |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.5166 | 0.9836 | 1.0 | yes | no |
| Q4R5P2 | ARF1_MACFA | No assigned EC number | 0.5055 | 0.9836 | 0.9944 | N/A | no |
| P34727 | ARF_AJECA | No assigned EC number | 0.5114 | 0.9508 | 0.9508 | N/A | no |
| P51822 | ARF1_DAUCA | No assigned EC number | 0.5027 | 0.9890 | 1.0 | N/A | no |
| Q55AD9 | ARL5_DICDI | No assigned EC number | 0.6077 | 0.9726 | 0.9726 | yes | no |
| O48649 | ARF1_SALBA | No assigned EC number | 0.5138 | 0.9890 | 1.0 | N/A | no |
| Q96KC2 | ARL5B_HUMAN | No assigned EC number | 0.5932 | 0.9617 | 0.9832 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 183 | |||
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 1e-113 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 1e-83 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 4e-82 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 4e-76 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 5e-76 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-75 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 2e-73 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 6e-72 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 2e-71 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 2e-60 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 2e-60 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 4e-53 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 5e-51 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 2e-48 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 5e-46 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 1e-45 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 3e-41 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 2e-33 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 3e-32 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 7e-29 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 1e-26 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 2e-26 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 8e-20 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-17 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 3e-14 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 6e-14 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 3e-13 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 3e-13 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 3e-12 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-11 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 4e-11 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 5e-11 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 6e-11 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 1e-10 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 2e-10 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 3e-10 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 5e-10 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 6e-10 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 2e-09 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 3e-09 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 3e-09 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 4e-09 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 7e-09 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 1e-08 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 1e-08 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 2e-08 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 2e-08 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 2e-08 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 4e-08 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 4e-08 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 4e-08 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 5e-08 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 6e-08 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 8e-07 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 1e-06 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 2e-06 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 4e-06 | |
| cd00880 | 161 | cd00880, Era_like, E | 5e-06 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 6e-06 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 6e-06 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 6e-06 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 7e-06 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 7e-06 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 8e-06 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 1e-05 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 2e-05 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 2e-05 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 3e-05 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 3e-05 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 1e-04 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 2e-04 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 3e-04 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 4e-04 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 8e-04 | |
| cd04102 | 204 | cd04102, RabL3, Rab GTPase-like family 3 (Rab-like | 0.001 | |
| pfam04536 | 120 | pfam04536, Repair_PSII, Repair protein | 0.002 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 0.004 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 318 bits (816), Expect = e-113
Identities = 113/174 (64%), Positives = 141/174 (81%)
Query: 3 ALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIR 62
L S W + FP K+YK+IIVGLDNAGKTT LY+ LGEVV T PT+GSNVEE+VYKNIR
Sbjct: 1 LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIR 60
Query: 63 FEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL 122
F WD+GGQE LR+SW TYY T AVI+VIDSTDR R+ + K+EL+++L HEDL+ +V+L
Sbjct: 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL 120
Query: 123 IFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176
+ ANKQDLK AMTPAEI+++L L SI++H WHIQ C ALTG+GL +GL+WI+ R
Sbjct: 121 VLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 1e-83
Identities = 92/166 (55%), Positives = 117/166 (70%)
Query: 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVG 69
+ K+ +I+I+GLDNAGKTT LYKL LGE+VTT PT+G NVE + YKN++F WDVG
Sbjct: 7 KLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVG 66
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129
GQE LR W Y+ T AVI V+DS DR RI K+EL LL E+L + +LI ANKQD
Sbjct: 67 GQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQD 126
Query: 130 LKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
L AM+ AEI + L LH +K+ W IQ CSA+TG+GL +GL+W+S
Sbjct: 127 LPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSN 172
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 4e-82
Identities = 87/158 (55%), Positives = 117/158 (74%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I+++GLD AGKTT LYKL LGEVVTT PT+G NVE + YKN++F WDVGGQ+++R W
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
YY T +I V+DS+DR RI K+EL +LL E+L+ + +LI ANKQDL A+T +E
Sbjct: 61 KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176
+ + L L SIK WHIQ CSA+TGDGL +GL+W+ ++
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 4e-76
Identities = 91/174 (52%), Positives = 127/174 (72%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG +S + LF K+ +I++VGLD AGKTT LYKL LGEVVTT PT+G NVE + YKN
Sbjct: 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
++F WDVGGQ++LR W YY+ T+ +I V+DS DR RI ++EL R+L ++L+ +V
Sbjct: 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
+L+FANKQDL +AM+ E+T+ L LHS++ +W+IQ C A T GL +GL+W+S
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174
|
Length = 182 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 5e-76
Identities = 78/158 (49%), Positives = 111/158 (70%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE + YKN++F+ WD+GGQ +R W
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
YY T A+I V+DSTDR R+ I K EL +L E+L+ +V+L+FANKQD+ A++ AE
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176
+ + L L +K+ W I SA G+GL +G++W+
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVNT 158
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 1e-75
Identities = 87/156 (55%), Positives = 120/156 (76%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F WDVGGQ+++R W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
Y++ T +I V+DS DR RI ++EL R+L ++L+ +V+L+FANKQDL +AM+ AE
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAE 121
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
+TD L LHS++N +W+IQA A +GDGL +GL+W+S
Sbjct: 122 VTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 157
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 2e-73
Identities = 93/181 (51%), Positives = 129/181 (71%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG +K + LF K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+++R W Y++ T +I V+DS DR R+ +DEL R+L ++L+ +V
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQDL +AM AEITD L LHS++ W+IQ+ A +G+GL +GL+W+S + K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Length = 181 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 6e-72
Identities = 96/174 (55%), Positives = 124/174 (71%), Gaps = 4/174 (2%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L SK LF K+ +I++VGLD AGKTT LYKL LGE VTT PT+G NVE + YKN
Sbjct: 1 MGKLFSK----LFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKN 56
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+++R W YY T +I V+DS DR RI ++EL R+L ++L+ +V
Sbjct: 57 ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV 116
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
+L+FANKQDL DAM AEIT+ L LHSI++ +W+IQ A +GDGL +GL W+S
Sbjct: 117 ILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 213 bits (543), Expect = 2e-71
Identities = 83/164 (50%), Positives = 116/164 (70%)
Query: 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQ 71
LF K+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F WDVGGQ
Sbjct: 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 63
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
+++R W YY GT +I V+DS DR RI + EL R++ +++ +++L+FANKQDL
Sbjct: 64 DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
DAM P EI + L L I++ +W++Q A +GDGL +GL W+S
Sbjct: 124 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 2e-60
Identities = 76/160 (47%), Positives = 109/160 (68%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ +I+++GLDNAGKTT L K + ++ T PT+G N++ L Y + WDVGGQ+ LR
Sbjct: 13 REMRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLR 72
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
+ W Y+ T A+I V+DS+DRAR+ K EL +LL E L + +LIFANKQDL A++
Sbjct: 73 SYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALS 132
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
P EI + L L SIK+H W I CSA+TG+ L+DG++W+
Sbjct: 133 PEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 2e-60
Identities = 69/164 (42%), Positives = 97/164 (59%)
Query: 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVG 69
++ +I+++GLDNAGKTT L +L ++ PT G N++ + + WD+G
Sbjct: 8 LKPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIG 67
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129
GQ ++R W Y+ T +I VIDS DR R EL LL E L VL+FANKQD
Sbjct: 68 GQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQD 127
Query: 130 LKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173
L A E+ +AL+LH I++ WHIQACSA TG+GL +G+ W+
Sbjct: 128 LLTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWV 171
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 4e-53
Identities = 72/160 (45%), Positives = 102/160 (63%), Gaps = 4/160 (2%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77
I+++GLDN+GKTT + +L + + PTVG NVE N+ F A+D+ GQ + R
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61
Query: 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV--LIFANKQDLKDAMT 135
W YY+ +I VIDS+DR R+ + KDEL LL H D++H + L +ANK DL DA+T
Sbjct: 62 WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
+IT L L +IK+ WHI A SALTG+GL +G++W+
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQA 161
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 5e-51
Identities = 69/159 (43%), Positives = 103/159 (64%), Gaps = 2/159 (1%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEEL-VYKNIRFEAWDVGGQERLRTS 77
+++++GLD+AGK+T LYKL E+VTT PTVG NVE L + K++ WDVGGQE++RT
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA 137
W Y T ++ V+DS+D AR+ + EL +L +E ++ V++ ANKQDL A+T
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 138 EITDALSLHSI-KNHDWHIQACSALTGDGLVDGLEWISQ 175
EIT L + DW++Q CSA+TG+GL + ++
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 2e-48
Identities = 74/162 (45%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+++ +GLD AGKTT L+KL E + PT+G NVE + YKN++F WDVGG+ +LR W
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
YY T AV+ VIDS+ R R+S EL +LL ++L+ +++LIFANKQD+ A++ E
Sbjct: 61 KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120
Query: 139 ITDALSLHSI-KNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
+T+ LSLH + W+IQ C A +G GL +GL+W+S+++
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 5e-46
Identities = 68/170 (40%), Positives = 97/170 (57%), Gaps = 16/170 (9%)
Query: 20 IIIVGLDNAGKTTTL----------YK-LHLGEVVTTHPTVGSNVEELVYKNIRFEAWDV 68
++I+GLDNAGKTT L YK L+ ++ PTVG N+ + R WD+
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKIT---PTVGLNIGTIEVGKARLMFWDL 58
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
GGQE LR+ W YY +H VI VIDSTDR R + K +++ +E L+ +L+ ANKQ
Sbjct: 59 GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQ 118
Query: 129 DLKDAMTPAEITDALS--LHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176
DL DA++ AEI + + I D +Q SAL G+G+ +G+EW+
Sbjct: 119 DLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLVDC 168
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 1e-45
Identities = 67/158 (42%), Positives = 96/158 (60%), Gaps = 6/158 (3%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEEL-----VYKNIRFEAWDVGGQERL 74
I+++GLD+AGKTT LY+L E V T PT G N E++ K + F WDVGGQE+L
Sbjct: 6 IVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKL 65
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134
R W +Y R T ++ V+DS D R+ K EL ++ + Q VL+ ANKQDL +A+
Sbjct: 66 RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNAL 125
Query: 135 TPAEITDALSLHSIKNHD-WHIQACSALTGDGLVDGLE 171
+E+ L+LH + + WH+Q A+ G+GL +GLE
Sbjct: 126 PVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLE 163
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 3e-41
Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 4 LVSKFWFML----FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYK 59
+ F+ +L K+ KI+ +GLDNAGKTT L+ L + PT+ EEL
Sbjct: 2 IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIG 61
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS 119
N++F +D+GG E+ R W Y+ ++ ++D+ D R K+EL LL E+L +
Sbjct: 62 NVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANV 121
Query: 120 VVLIFANKQDLKDAMTPAEITDALSLH---------SIKNHDWHIQA---CSALTGDGLV 167
+LI NK D A++ E+ +AL L+ S+K + CS + G
Sbjct: 122 PILILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYG 181
Query: 168 DGLEWISQ 175
+G W+SQ
Sbjct: 182 EGFRWLSQ 189
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-33
Identities = 53/158 (33%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGE-VVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
I +VGL N+GKTT + + G+ T PTVG N+ ++ N+ + WD+GGQ R R+ W
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
Y RG +A++ V+D+ DR ++ + K+EL LL L+ +L+ NK DL A++ E
Sbjct: 62 ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176
+ + ++L SI + + + SA + L+W+ +
Sbjct: 122 LIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-32
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79
++ VGLDNAGKTT + L PTVG +L +D+GG R W
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61
Query: 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEI 139
YY H ++ V+DS+D R+ +K+ L LL H + +L+ ANKQD K+A+ A++
Sbjct: 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121
Query: 140 TDALSLHSIKNHD---WHIQACSALTGDG------LVDGLEWI 173
+ LSL + N + HI+ CSA+ G G +V+GL W+
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-29
Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
I+++GLD AGKT+ L+ L + + PT G N + ++ E ++GG + LR W
Sbjct: 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHE-DLQHSVVLIFANKQDLKDAMTPA 137
Y G+ +I V+DS D R+ + + EL +LL H DL +++ ANKQDL A +
Sbjct: 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP---LVVLANKQDLPAARSVQ 118
Query: 138 EITDALSLHSIKN-HDWHIQACSALTGDGLVDGLE 171
EI L L I W +Q S L DG +E
Sbjct: 119 EIHKELELEPIARGRRWILQGTS-LDDDGSPSRME 152
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 1e-26
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 7/169 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
K KI+ +GLDNAGKTT L+ L + PT EEL NI+F +D+GG ++ R
Sbjct: 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQAR 75
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
W Y+ + ++ ++D+ D+ R + K EL LL E+L LI NK D A +
Sbjct: 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAAS 135
Query: 136 PAEITDALSLHSIKNHDWHIQA-------CSALTGDGLVDGLEWISQRV 177
E+ AL L + + CS + G +G +W+SQ +
Sbjct: 136 EDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLSQYI 184
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 2e-26
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNV----EELVYKNIRFEAWDVGG 70
K++KI+++G GKTT L +L E PT+G+ E +NI+ + WD G
Sbjct: 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QE R+ YYRG + +++V DST R + +E L +L+ NK DL
Sbjct: 64 QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123
Query: 131 KDAMTPAEI 139
D + +E
Sbjct: 124 FDEQSSSEE 132
|
Length = 219 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 8e-20
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 16/165 (9%)
Query: 22 IVGLDNAGKTTTLYKLHLGEVV----TTHPTVGSNVE--ELVYKNIRFEAWDVGGQERLR 75
+VG GK++ L L GEV T +V EL ++ D G +
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61
Query: 76 TSW-----ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
RG +++V+DSTDR K + R L E + +++ NK DL
Sbjct: 62 GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGI---PIILVGNKIDL 118
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
+ E+ L I + SA TG+G+ + E + +
Sbjct: 119 LEEREVEELLRLEELAKILGV--PVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-17
Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 11/129 (8%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGE--VVTTHPTVGSNVEELVY----KNIRFEAWDVGG 70
+ KI+IVG N GK+T L +L + + P N V K +F D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 71 QERLRTSWATYYRGTHAVIVVIDST---DRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
QE YYR + + V D + K + + H +++ NK
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQT--KEIIHHAESGVPIILVGNK 118
Query: 128 QDLKDAMTP 136
DL+DA
Sbjct: 119 IDLRDAKLK 127
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 3e-14
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+KI+++G GKT+ L + + + T+G + + E+ K ++ + WD GQE
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQD 129
R R+ ++YYRG H I+V D T+R + +EL + +++ NK D
Sbjct: 61 RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAP----PNIPIILVGNKSD 116
Query: 130 LKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165
L+D ++ E + K + SA TG+
Sbjct: 117 LEDERQVSTEEA-QQFA----KENGLLFFETSAKTGEN 149
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-14
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV---EELVYKNIRFEAWDVGGQERLRT 76
++++G ++GKT KL G+V +T ++ NV K + DV G E+LR
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRD 62
Query: 77 SWATYYRGTHAVIV-VIDSTDRAR-ISIMKDELFRLL-GHEDLQHSV-VLIFANKQDLKD 132
Y + + IV V+DS + I + + L+ +L E +++ + +LI NKQDL
Sbjct: 63 KLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFT 122
Query: 133 AMTPAEITDAL 143
A +I + L
Sbjct: 123 AKPAKKIKELL 133
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-13
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVY----KNIRFEAWDVGGQE 72
+KII++G N GKT Y+ G T T+G + E + I+ + WD GQE
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62
Query: 73 RLRTSW-ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV-----LIFAN 126
R R S YYR HAV+ V D T+ A + + E QHS+ ++ N
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWI-----EECEQHSLPNEVPRILVGN 117
Query: 127 KQDLKDA 133
K DL++
Sbjct: 118 KCDLREQ 124
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-13
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 23/168 (13%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHP-------------TVGSNVEELVYKNIRFEA 65
KI+++G AGKTT + L +V T TV + +
Sbjct: 12 KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGV 70
Query: 66 WDVG--GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
G GQER + W RG IV++DS+ I+ +E+ L + V++
Sbjct: 71 HLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP--ITFHAEEIIDFLTSRNPIP--VVV 126
Query: 124 FANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171
NKQDL DA+ P +I +AL L + A G+G D L+
Sbjct: 127 AINKQDLFDALPPEKIREALKLE---LLSVPVIEIDATEGEGARDQLD 171
|
Length = 187 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-12
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 23/159 (14%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG--SNVEELVY--KNIRFEAWDVGGQER 73
K+++VG GK++ L + + + PT+G + + K ++ + WD GQER
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
R YYRG ++V D T R + +E+ R E++ +++ NK DL
Sbjct: 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD-ENV---PIVLVGNKCDL 116
Query: 131 KD--AMTPAEITDALSLHSIKNHDWHIQ--ACSALTGDG 165
+D ++ E +L + + SA T +
Sbjct: 117 EDQRVVSTEE---GEALAK----ELGLPFMETSAKTNEN 148
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-11
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 18/143 (12%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + ++ T+G + + EL K ++ + WD GQE
Sbjct: 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV-----LIFANK 127
R RT ++YYRG H +I+V D TD+ + +K L +++ L+ NK
Sbjct: 63 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL------QEIDRYASENVNKLLVGNK 116
Query: 128 QDLKD--AMTPAEITDALSLHSI 148
DL D + E + I
Sbjct: 117 CDLTDKKVVDYTEAKEFADELGI 139
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-11
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDVGGQE 72
KI+++G GK++ L + T+G + K ++ WD GQE
Sbjct: 1 LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R RT ++YYRG VI+V D T R + L L + +V ++ NK D ++
Sbjct: 61 RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
E + + H+ SA T G+ E + +++
Sbjct: 121 REVTREEGQKFA----RKHNMLFIETSAKTRIGVQQAFEELVEKI 161
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-11
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+KII++G N GKT + + G T+G + E+ K ++ + WD GQE
Sbjct: 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGH--EDLQH----SVVLIF-A 125
R RT +YYR + I+ D T R+ F + H E+++ +VVL+
Sbjct: 64 RFRTITQSYYRSANGAIIAYDITRRSS--------FESVPHWIEEVEKYGASNVVLLLIG 115
Query: 126 NKQDLKD 132
NK DL++
Sbjct: 116 NKCDLEE 122
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 6e-11
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN--VEELVY--KNIRFEAWDVGGQER 73
+KI+++G GK++ L V PT+G + +++L K ++ WD GQER
Sbjct: 15 FKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKD------ELFRLLGHEDLQHSVVLIFANK 127
RT ++YYR +I+V D T R + + D EL+ Q V ++ NK
Sbjct: 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELY-----STNQDCVKMLVGNK 129
Query: 128 QDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162
D +++ + ++L K H CSA T
Sbjct: 130 VD-RESERDVSREEGMAL--AKEHGCLFLECSAKT 161
|
Length = 211 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-10
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 18 YKIIIVGLDNAGKTTTLYKLH----LGEVVTTHPTVGSNVE----ELVYKNIRFEAWDVG 69
+K++I+G GK++ L + G +TT +G + + E+ + ++ + WD
Sbjct: 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITT---IGVDFKIRTVEINGERVKLQIWDTA 63
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTD 96
GQER RT +TYYRGTH VIVV D T+
Sbjct: 64 GQERFRTITSTYYRGTHGVIVVYDVTN 90
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-10
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+KII++G GK++ L + G+ + T+G V+ E+ K ++ + WD G
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG--VDFKTKTIEVDGKRVKLQIWDTAG 58
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER R+ ++YYRG ++V D T+R +++ L L + ++L+ NK DL
Sbjct: 59 QERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLV-GNKSDL 117
Query: 131 KD 132
++
Sbjct: 118 EE 119
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-10
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 16/160 (10%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQER 73
K+I+VG + GKT + + + T+G + E E++ + WD GQER
Sbjct: 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
+ +TYYRG A+I+V D TD A + + L L D ++ + K+DL
Sbjct: 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL--- 118
Query: 134 MTPAEIT----DALSL-HSIKNHDWHIQACSALTGDGLVD 168
+PA+ DA+ L +K W A SALTG+ + D
Sbjct: 119 SSPAQYALMEQDAIKLAREMKAEYW---AVSALTGENVRD 155
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-10
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVG----SNVEELVYKNIRFEAWDVGGQ 71
+K +I+G GK+ L++ + + H T+G S V + K+++ + WD GQ
Sbjct: 1 FKFLIIGSAGTGKSCLLHQFIENKFKQDSNH-TIGVEFGSRVVNVGGKSVKLQIWDTAGQ 59
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL--FRLLGHEDLQHSVVLIFANKQD 129
ER R+ +YYRG ++V D T R + + + L R L D+ V+++ NK+D
Sbjct: 60 ERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDI---VIILVGNKKD 116
Query: 130 LKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166
L+D E+T + + + SALTG+ +
Sbjct: 117 LEDD---REVTFLEASRFAQENGLLFLETSALTGENV 150
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-10
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSN-----VEELVYKNIRFEAWDVGGQ 71
+++I++G GK++ L + G + PTVG + +E I+ + WD GQ
Sbjct: 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
ER R+ +YYR + V++V D T+R + D L H V ++ +K DL+
Sbjct: 63 ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122
Query: 132 D--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+T E A L K+ SA TGD + + E ++Q +
Sbjct: 123 SQRQVTREE---AEKLA--KDLGMKYIETSARTGDNVEEAFELLTQEI 165
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-09
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + + T+G + + EL K I+ + WD GQE
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDR 97
R RT +YYRG +I+V D TD
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDE 88
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-09
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 26/146 (17%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHL-GEVVTTH-PTVGSNVEELVYKN----IRFEAWDVGGQ 71
+K++IVG GKTT + K HL GE + PT+G V L + IRF WD GQ
Sbjct: 14 FKLVIVGDGGTGKTTFV-KRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
Query: 72 ER---LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
E+ LR YY I++ D T AR++ + H DL ++ +++
Sbjct: 73 EKFGGLRDG---YYIHGQCAIIMFDVT--ARLTYKNVPTW----HRDLCRVCENIPIVLC 123
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKN 150
NK D+K+ A+ ++ H KN
Sbjct: 124 GNKVDVKNRQVKAK---QVTFHRKKN 146
|
Length = 219 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-09
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE-ELVYKN---IRFEAWDVGGQE 72
+K++I+G + GKT+ L++ + TVG + + + VY+N I+ + WD GQE
Sbjct: 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R RT YYRG I++ D T+ + ++D ++ + V+L+ NK D++D
Sbjct: 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV-GNKCDMED 120
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-09
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHP-TVG----SNVEELVYKNIRFEAWDVGGQE 72
+K II+G GK+ L++ + + P T+G + + E+ + I+ + WD GQE
Sbjct: 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R +YYRG ++V D T R+ + + L + ++V+ + NK DL+
Sbjct: 63 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLEA 121
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168
++T + + CSA TG+ + D
Sbjct: 122 QR---DVTYEEAKQFADENGLLFLECSAKTGENVED 154
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 7e-09
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSNVEELVYK----NIRFEAWDVGGQ 71
+K+++VG GKT L + G + TVG V ++ + WD GQ
Sbjct: 1 FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQDL 130
ER R+ YYR HA++++ D T+++ ++ L + E Q VV+ + NK D+
Sbjct: 61 ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEI--LEYAQSDVVIMLLGNKADM 118
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-08
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLG-----EVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K++++G GKT+ + + TT + + K I WD GQE
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDR---ARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129
R YYR I+V D TD ++ EL ++ G ++ ++I NK D
Sbjct: 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNIS---LVIVGNKID 116
Query: 130 LKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178
L+ ++ +E + K H + SA TG G+ + +++R+
Sbjct: 117 LERQRVVSKSEAEEYAKSVGAK----HFE-TSAKTGKGIEELFLSLAKRMI 162
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHL-GEVVTTH-PTVGSNVEELV-YKN---IRFEAWDVGGQ 71
+K+I+VG GKTT K HL GE + PT+G V L Y N I F WD GQ
Sbjct: 10 FKLILVGDGGVGKTT-FVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA 98
E+ YY I++ D T R
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSRI 95
|
Length = 215 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 2e-08
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGE-VVTTHPTVG----SNVEELVYKNIRFEAWDVGGQE 72
+KI+++G GK+ L + E + + T+G + ++ K ++ + WD GQE
Sbjct: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R R + YYRG ++V D T R ++ L L H D + V+++ NK DL
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD-SNIVIMMAGNKSDLN 130
|
Length = 216 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE--LVYKNIRFEAWDVGGQERLRTS 77
+II GL ++GKT+ L G V T + + +++K F D G +LR
Sbjct: 6 VIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHVKLRQK 65
Query: 78 WATYY---RGTHAVIVVIDST-DRARISIMKDELFRLLGHEDLQHSVV--LIFANKQDLK 131
++ V+DST ++ + L+ +L +L + + LI NKQ+
Sbjct: 66 LLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQESF 125
Query: 132 DAMTPAEITDAL 143
A P +I AL
Sbjct: 126 TARPPKKIKQAL 137
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-08
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMK---DELFRLLGHEDL 116
++FE WD GQER R+ YYRG A IVV D T K EL + G ++
Sbjct: 49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKEL-QEHGPPNI 107
Query: 117 QHSVVLIFANKQDLKD--AMTPAEITD-ALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173
V+ + NK DL+ ++ E + A + SA TG+ + + I
Sbjct: 108 ---VIALAGNKADLESKRQVSTEEAQEYADENGLL------FMETSAKTGENVNELFTEI 158
Query: 174 SQRV 177
++++
Sbjct: 159 ARKL 162
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-08
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHL-GEVVTTH-PTVGSNVEELVYKN----IRFEAWDVGGQ 71
+K+++VG GKTT + K HL GE + T+G V L + IRF WD GQ
Sbjct: 1 FKLVLVGDGGTGKTTFV-KRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ 59
Query: 72 ER---LRTSWATYYRGTHAVIVVIDSTDR 97
E+ LR YY I++ D T R
Sbjct: 60 EKFGGLRDG---YYIQGQCAIIMFDVTSR 85
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-08
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDVGGQE 72
+K++ +G + GKT+ + + + T+G S + K +R + WD GQE
Sbjct: 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R R+ +Y R + +VV D T+R + D+ + E ++++ NK DL
Sbjct: 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNT--DKWIDDVRDERGNDVIIVLVGNKTDLS 118
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
D +++ K ++ SA G + + I+Q
Sbjct: 119 DKR---QVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQ 159
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-08
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE------ELVYKNIRFEAWDVGG 70
+KI+++G GK+ L + E + + T+G VE ++ K I+ + WD G
Sbjct: 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIG--VEFATRTIQIDGKTIKAQIWDTAG 61
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER R + YYRG ++V D T ++ ++ L L H D + V+++ NK DL
Sbjct: 62 QERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHAD-SNIVIMLVGNKSDL 120
Query: 131 KD 132
+
Sbjct: 121 RH 122
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-08
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSN-VEE--LVYKNIRFEAWDVGGQ--- 71
K++IVG GKT+ LY LGE HPTV N V + + K ++ WD GQ
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 72 ERLRTSWATYYRGTHAVIV-----VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
ERLR Y H +++ DS + R + +E+ R + V++
Sbjct: 63 ERLR---PLSYSKAHVILIGFAIDTPDSLENVRTKWI-EEVRRYCP-----NVPVILVGL 113
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHDWHIQA----------CSALTGDGLVDGLE 171
K+DL+ + + + + A CSALTG+G+ D E
Sbjct: 114 KKDLRQ--EAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFE 166
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-08
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVYKNIRFEAWDVGGQER 73
K++++G +GK++ L +L GE T+ + E+ WD GG+E
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 74 LRTSWATYYRGTHAVIVVIDSTDR---ARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
L+ + + A+++V D TDR +S + L L V++ NK
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLG--GKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 8e-07
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN----VEELVYKNIRFEAWDVGGQE 72
+KI+++G GKT + + G T+G + E+ + I+ + WD GQE
Sbjct: 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R+ +YYR +A+I+ D T + + L + + + + +L+ NK DL +
Sbjct: 68 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILV-GNKIDLAE 126
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-06
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEE--LVYKN-------- 60
DY K++ +G GKTT LY+ +P TVG + E +VY +
Sbjct: 2 DYLIKLLALGDSGVGKTTFLYRYTDN---KFNPKFITTVGIDFREKRVVYNSQGPDGTSG 58
Query: 61 ----IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL 116
+ + WD GQER R+ ++R +++ D T +++ + +L H
Sbjct: 59 KAFRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYC 118
Query: 117 QHSVVLIFANKQDLKD 132
++ +++ NK DL D
Sbjct: 119 ENPDIVLIGNKADLPD 134
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-06
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN-VEELVYKN-----IRFEAWDVGGQ 71
K+I+VG N GK++ + + G + T+G + +E+ ++ +R WD GQ
Sbjct: 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL- 130
E YYRG A I+V +TDR S E ++ + +++ K DL
Sbjct: 62 EEFDAITKAYYRGAQACILVFSTTDRE--SFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119
Query: 131 KDAMTPAEITDALS 144
A+ E +AL+
Sbjct: 120 DQAVITNEEAEALA 133
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-06
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 43/140 (30%)
Query: 18 YKIIIVGLDNAGKTTTL-----------YKLHLG-----EVVTTHPTVGSNVEELVYKNI 61
+K++++G GKT+ + YK +G +V+ P +
Sbjct: 1 FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDP----------NTVV 50
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARIS-IMKDELFRLLGHEDLQHSV 120
R + WD+ GQER YY+G I+V D T + ++K DL V
Sbjct: 51 RLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLK-------WKADLDSKV 103
Query: 121 ---------VLIFANKQDLK 131
L+ ANK DLK
Sbjct: 104 TLPNGEPIPALLLANKCDLK 123
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-06
Identities = 39/160 (24%), Positives = 57/160 (35%), Gaps = 26/160 (16%)
Query: 22 IVGLDNAGKTT---TLYKLHLGEV-----VTTHPTVGSNVEELVYKNIRF-------EAW 66
I G N GK++ L ++G V T P E L + E
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRK-EWELLPLGPVVLIDTPGLDEE- 59
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
G+ER+ + R V++V+DS K L R G VL+ N
Sbjct: 60 GGLGRERVEEARQVADR-ADLVLLVVDSDLTPVEEEAKLGLLRERGKP------VLLVLN 112
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166
K DL E+ L + + + A SAL G+G+
Sbjct: 113 KIDLVPESEEEELLRERKLELLPDLP--VIAVSALPGEGI 150
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 6e-06
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 55 ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97
EL K IR + WD GQER + + YYR +I+V D T +
Sbjct: 43 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK 85
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 6e-06
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQH 118
K I + WD GQER +T A+YY HA I+V D T + + L E
Sbjct: 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL--REYRPE 104
Query: 119 SVVLIFANKQDLKDAMT 135
++ ANK DL ++T
Sbjct: 105 IPCIVVANKIDLDPSVT 121
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 6e-06
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
++++++G GKT L + E ++H T+G + + E+ +R + WD GQE
Sbjct: 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60
Query: 73 RLRTSWATYYRGTHAVIVVID-STDRARISIMK 104
R +T YYR + +V D S++R+ IMK
Sbjct: 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMK 93
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-06
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 19 KIIIVGLDNAGKTT--TLYKLHLGEVVTTHPTVGS-------NVEELVYKNIRFEAWDVG 69
K++++G ++ GKT+ Y H V T+G+ V E + + WD
Sbjct: 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGE---RVVTLGIWDTA 58
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRA 98
G ER YYRG A IV D TD +
Sbjct: 59 GSERYEAMSRIYYRGAKAAIVCYDLTDSS 87
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 7e-06
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTV-----GSNVEELVYKNIRFEAWDVGGQE 72
+K II+G GK+ L + H G+ + + K I+ + WD GQE
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
R+ +YYRG ++V D T R + + L H + +++LI NK DL
Sbjct: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI-GNKCDL 123
|
Length = 210 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 8e-06
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 23 VGLDNAGKTTTLYKLHL-GEVVTTH-PTVGSNVEELVYKN----IRFEAWDVGGQERLRT 76
VG GKTT K HL GE + T+G V LV+ IRF WD GQE+
Sbjct: 1 VGDGGTGKTT-FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG 59
Query: 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIFANKQDLKD 132
YY I++ D T R + + H DL ++ +++ NK D+KD
Sbjct: 60 LRDGYYIQGQCAIIMFDVTARVTYKNVPN------WHRDLVRVCENIPIVLCGNKVDVKD 113
Query: 133 AMTPAEITDALSLHSIKNHDWH 154
A+ +++ H KN ++
Sbjct: 114 RKVKAK---SITFHRKKNLQYY 132
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 1e-05
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
+R + WD GQER R+ +Y R + A IVV D T+R + +L +E + +
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL-NERGKDVI 87
Query: 121 VLIFANKQDLKD 132
+ + NK DL D
Sbjct: 88 IALVGNKTDLGD 99
|
Length = 176 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 18 YKIIIVGLDNAGKTTTLY-----KLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K II+G GK+ L + +T G+ + + K I+ + WD GQE
Sbjct: 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS----VVLIFANKQ 128
R+ +YYRG ++V D T R + + L + QHS +++ NK
Sbjct: 65 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWL-----EDARQHSNSNMTIMLIGNKC 119
Query: 129 DL 130
DL
Sbjct: 120 DL 121
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-05
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
K++++G N GKT+ L++ T TVG + WD G+E+
Sbjct: 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLL--GHEDLQHSVVLIFANKQDLKDAMTP 136
+ Y RG AVI+ D ++ + ++D L +ED +VV NK DL +
Sbjct: 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVV---GNKLDLTEEGAL 118
Query: 137 A-EITDALSLHSIKNH 151
A + DA S ++
Sbjct: 119 AGQEKDAGDRVSPEDQ 134
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 32/166 (19%)
Query: 19 KIIIVGLDNAGKTTTL-------------YKLHLGE--VVTTHP--TVGSNVEELVYKNI 61
+ +VG GK+ + Y + G VV T P +VE ++
Sbjct: 2 QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIF--- 58
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
D GQE + V VV D T+ + + R+ H H+
Sbjct: 59 -----DSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPG 113
Query: 122 LIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165
++ NK DL D + A+ +++K ++ SA G G
Sbjct: 114 VLVGNKCDLTDRREVDAAQAQALAQANTLKFYE-----TSAKEGVG 154
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-05
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI------------DS 94
T G + +K ++F +DVGGQ R W + A+I V+ DS
Sbjct: 154 KTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDS 213
Query: 95 TDRARISIMKDELFR-LLGHEDLQHSVVLIFANKQDL 130
T+R S+ LF + +++ +++F NK+DL
Sbjct: 214 TNRLEESLN---LFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 18 YKIIIVGLDNAGKT-----------TTLYKLHLGEVVTTHPTVGSN--VEELVY--KNIR 62
K+II+G GKT + YK T+G++ +E+ + +
Sbjct: 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK----------ATIGADFLTKEVTVDDRLVT 50
Query: 63 FEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHS 119
+ WD GQER ++ +YRG ++V D T+ + +DE D ++
Sbjct: 51 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENF 110
Query: 120 VVLIFANKQDLKD 132
++ NK DL++
Sbjct: 111 PFVVLGNKIDLEE 123
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 20/77 (25%)
Query: 19 KIIIVGLDNAGKTTTLYKL----HLGEVVTTHPTVGSNVEELVYKN-----IRFEAWDVG 69
K+++VG GKT+ +L G+ +TH G NV++ IR WD G
Sbjct: 3 KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTH---GINVQDWKIPAPERKKIRLNVWDFG 59
Query: 70 GQERLRTSWATYYRGTH 86
GQE Y TH
Sbjct: 60 GQE--------IYHATH 68
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 3e-04
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 16 KDY----KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE-----LVYKNIRFEAW 66
K Y K ++VG + GK L L G + + + L + ++ + W
Sbjct: 1 KAYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLW 60
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97
D GQ R T + +Y RG +I+V D T+R
Sbjct: 61 DTSGQGRFCTIFRSYSRGAQGIILVYDITNR 91
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 4e-04
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG-SNVEELVY--KNIRFEAWDVGGQER 73
+K+I+VG GK+ + E V + PT S +++V + ++ D GQE
Sbjct: 1 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQED 60
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
Y+R ++V TD + + + ++L ++ + +L+ NK DL+D
Sbjct: 61 YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED- 119
Query: 134 MTPAEITDALSLHSIKNHDWHIQ 156
+ ++ + W +
Sbjct: 120 ----KRQVSVEEAANLAEQWGVN 138
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 8e-04
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 15/157 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT--HPTVGSN-----VEELVYKNIRFEAWDVGG 70
KI+++G +GKT+ L + E T+G + + N+ + WD+GG
Sbjct: 1 IKIVVLGDGASGKTS-LIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGG 59
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKD---ELFRLLGHEDLQHSVVLIFANK 127
Q+ Y G AV +V D T+ ++D + ++ + + +VL+ NK
Sbjct: 60 QQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLV-GNK 118
Query: 128 QDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164
DL+ +T + +D SA TGD
Sbjct: 119 TDLEHNRQ---VTAEKHARFAQENDMESIFVSAKTGD 152
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3) | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.001
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHP-TVGSNVEELVY---------KNIRFEAWDV 68
K++++G GK++ ++ L +V+ TVG +V+ + K E WDV
Sbjct: 2 KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61
Query: 69 GGQ----ERLRTSWATYYRGTHAVIVVIDSTDR 97
GG E ++++ A +Y + +I V D T++
Sbjct: 62 GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNK 94
|
RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204 |
| >gnl|CDD|203039 pfam04536, Repair_PSII, Repair protein | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 25/117 (21%)
Query: 71 QERLRTSWATYYRGTHA--VIVVIDSTDRARISIMKDELFRLLG-HEDLQHSVVLIFANK 127
+ RL + A + T V+V + S D I +LF G + + VL+
Sbjct: 7 RARLEQALAALEQKTGGEIVVVTVPSLDGEDIEDYALDLFDAWGLGDTEDDNGVLLLVAL 66
Query: 128 QD----------LKDAMTPA---EITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171
D L+ + A EI D L + + D+ +G+V ++
Sbjct: 67 NDRKVRIEVGYGLEGRLPDAFWDEIIDDLIVPYFREGDY---------AEGIVAAVD 114
|
In plants, this domain plays a role in the photosystem II (PSII) repair cycle. It may be involved in the regulation of synthesis/degradation of the D1 protein of the PSII core and in the assembly of PSII monomers into dimers in the grana stacks. Its function in other organisms is unknown. Length = 120 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 36.0 bits (83), Expect = 0.004
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQE-- 72
K++++G GKT+ L G + PTV N ++ + WD GQE
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61
Query: 73 -RLRTSWATYYRGTHAVIVV--IDSTD 96
RLR+ Y TH +++ +D+ D
Sbjct: 62 DRLRS---LSYADTHVIMLCFSVDNPD 85
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 183 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 100.0 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 100.0 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 100.0 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 100.0 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 100.0 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| PLN03118 | 211 | Rab family protein; Provisional | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.98 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.98 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.98 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.98 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.98 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.98 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.98 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.98 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.98 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.98 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.98 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.98 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.98 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.98 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.97 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.97 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.97 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.97 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.96 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.96 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.96 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.95 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.95 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.95 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.95 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.95 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.95 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.95 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.95 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.95 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.94 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.94 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.94 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.94 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.94 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.93 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.93 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.93 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.93 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.93 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.93 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.93 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.93 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.93 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.93 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.93 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.93 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.93 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.93 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.93 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.92 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.92 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.92 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.92 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.92 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.92 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.92 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.92 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.92 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.92 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.92 | |
| PTZ00099 | 176 | rab6; Provisional | 99.92 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.91 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.91 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.91 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.91 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.91 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.91 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.9 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.9 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.9 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.9 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.9 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.9 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.9 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.9 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.9 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.9 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.9 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.9 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.9 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.89 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.89 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.89 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.89 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.89 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.89 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.88 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.88 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.88 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.88 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.88 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.88 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.87 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.87 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.87 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.87 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.87 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.87 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.87 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.87 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.86 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.86 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.86 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.86 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.86 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.85 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.85 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.85 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.85 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.85 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.85 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.85 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.84 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.84 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.83 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.83 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.83 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.82 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.82 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.81 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.81 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.81 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.81 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.81 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.81 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.81 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.81 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.81 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.8 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.8 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.8 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.8 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.8 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.79 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.79 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.79 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.79 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.78 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.78 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.77 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.77 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.77 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.77 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.77 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.76 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.76 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.76 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.75 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.75 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.74 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.74 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.74 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.73 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.72 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.72 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.71 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.71 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.7 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.7 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.7 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.69 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.69 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.67 | |
| PRK13768 | 253 | GTPase; Provisional | 99.66 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.65 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.65 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.64 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.63 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.62 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.61 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.59 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.59 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.58 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.58 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.57 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.56 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.55 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.55 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.55 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.54 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.53 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.53 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.53 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.52 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.52 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.51 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.51 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.51 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.5 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.49 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.48 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.47 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.45 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.44 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.44 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.43 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.43 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.41 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.4 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.4 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.38 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.38 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.38 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.38 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.36 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.36 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.36 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.33 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.31 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.3 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.28 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.25 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.24 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.23 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.21 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.21 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.21 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.2 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.18 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.14 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.14 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.12 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.11 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 99.1 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.09 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.09 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.05 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.04 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 99.02 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.0 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 99.0 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.98 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.97 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.96 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.95 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.95 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.94 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.92 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.92 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.91 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.91 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.9 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.9 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.9 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.89 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.89 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.88 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.87 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.87 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.87 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.83 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.81 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.81 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.79 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.78 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.78 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.78 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.78 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.78 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.76 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.73 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.72 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.68 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.67 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.66 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.61 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.59 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.58 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.57 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.57 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.56 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.55 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.53 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.52 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.5 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.5 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.49 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.48 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.43 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.41 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.4 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.4 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.38 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.36 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.34 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.32 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.31 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.28 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.27 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.25 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.23 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.19 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 98.15 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.15 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.14 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.14 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.13 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 98.12 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.12 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.11 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.11 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.06 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.05 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.02 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 98.02 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.02 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 98.01 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.98 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.98 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.97 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.96 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.94 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.94 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.91 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.91 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.91 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.91 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.9 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.9 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.89 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.87 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.87 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.87 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.84 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.83 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.8 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.79 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.78 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.78 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.77 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.77 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.76 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.71 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.71 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.7 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.7 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.68 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 97.66 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.66 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.64 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.63 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.62 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.6 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.59 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.59 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.59 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.58 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.56 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.55 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.54 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.53 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.53 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.52 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.51 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 97.51 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.51 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.51 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.5 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.5 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.5 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.49 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.49 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.48 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.48 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.47 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.47 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 97.47 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 97.47 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.46 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.46 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.46 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 97.45 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 97.45 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.44 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.44 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.43 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.43 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.43 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.43 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.42 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.42 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.42 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.42 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.42 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 97.42 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.41 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 97.41 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 97.41 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.41 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.4 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 97.4 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 97.4 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=213.97 Aligned_cols=180 Identities=51% Similarity=0.926 Sum_probs=155.1
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||.+.+..++....++.+||+++|+++||||||++++..+.+..+.+|.+.+...+..+...+.+||+||++++...|..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 88777666666667788999999999999999999999888777778889888888888999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++++|++|+|+|+++++++.....++...+......+.|+++++||.|+.+.....++.+.++........+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999998888888876544467999999999999877666777776665443345566889999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|+|++++|+||.+.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999988764
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=211.11 Aligned_cols=180 Identities=51% Similarity=0.909 Sum_probs=154.7
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||.+.+.+++....++.+||+++|++|+|||||++++..+.+..+.+|.+.++..+....+.+.+|||||++++...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 88888888888888888999999999999999999998887777778888887777788899999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++++|++|+|+|+++++++.....++...+......+.|+++|+||.|+.+.....++...++........+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999888888876544456899999999999766556666666665444445667889999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|.|++++|+||.+.+.+.
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887653
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=204.64 Aligned_cols=174 Identities=55% Similarity=0.962 Sum_probs=146.5
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||.++... ..++.+||+++|++|+|||||++++..+.+..+.+|.+.....+..+...+.+||+||+.++...+..
T Consensus 1 ~~~~~~~~----~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~ 76 (175)
T smart00177 1 MGKLFSKL----FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRH 76 (175)
T ss_pred Cchhhhhh----cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHH
Confidence 66654323 33567999999999999999999998777766778888887777788899999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++++|++++|+|++++.++.....++..++......+.|+++|+||.|+.+.....++.+.++........+.++++||
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 156 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCA 156 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeC
Confidence 99999999999999999999999999998876544457999999999999766556666666665544455677889999
Q ss_pred ccCCCHHHHHHHHHHhhh
Q 030113 161 LTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~ 178 (183)
++|.|++++|+||.+.+.
T Consensus 157 ~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 157 TSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999988764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=203.59 Aligned_cols=164 Identities=23% Similarity=0.336 Sum_probs=136.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+-+||+|+|+.|+|||+|+.++.++.+++ +..|+|+.+..-+. +.+++++|||+||++|+..+.+|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 466999999999999999999999999987 66888877654333 5689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceE-EEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWH-IQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~gi~~ 168 (183)
+|||+++.+||.++..|+.++..+.. .++|.++|+||+|+.+.... ....+...+...+.+ ++++||+++.|+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v---~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVV---STEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheec---CHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999976643 56899999999998654322 111122222344556 99999999999999
Q ss_pred HHHHHHHhhhccCC
Q 030113 169 GLEWISQRVTGKAP 182 (183)
Q Consensus 169 ~~~~i~~~~~~~~~ 182 (183)
.|..+...+..+.+
T Consensus 163 ~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 163 AFLTLAKELKQRKG 176 (205)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998887654
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=202.07 Aligned_cols=162 Identities=50% Similarity=0.946 Sum_probs=139.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
..+.++|+++|++|+|||||++++..+.+..+.+|.+.....+......+++|||||++++...+..+++++|++++|||
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 35679999999999999999999988877777788888877777788999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
++++.++.+...++...+......+.|+++|+||+|+.+.....++.+.++........++++++||++|.|++++|+||
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 99999999999999888765444578999999999997665666777766544434456689999999999999999999
Q ss_pred HH
Q 030113 174 SQ 175 (183)
Q Consensus 174 ~~ 175 (183)
.+
T Consensus 166 ~~ 167 (168)
T cd04149 166 SS 167 (168)
T ss_pred hc
Confidence 75
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=195.28 Aligned_cols=180 Identities=52% Similarity=0.933 Sum_probs=173.3
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||..++.++.....+++.+|+++|-.++||||+++++-.++...+.||+|++.+.+.+++..+.+||.+||++++..|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
|+++.+++|||+|.+|.+++.+....+..++.+....+.|+++.+||.|+.......++.+.++........+.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999988889999999999999999999999999998888889999999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
.+|+|+.|.++|+.+.+.++
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999998765
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=197.88 Aligned_cols=171 Identities=65% Similarity=1.151 Sum_probs=146.6
Q ss_pred hHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccC
Q 030113 5 VSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRG 84 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (183)
...+++.+.+.+.++|+++|++|+|||||++++..+.+..+.++.+.++..+..+...+.+||+||++++...+..+++.
T Consensus 3 ~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 82 (174)
T cd04153 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTN 82 (174)
T ss_pred hhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhc
Confidence 34566666666789999999999999999999998888778888888888888889999999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
+|++++|+|+++++++.....++..++......+.|+++++||+|+.......++.+.++........++++++||++|+
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 99999999999999998888888888766545679999999999997655556666666644444556789999999999
Q ss_pred CHHHHHHHHHH
Q 030113 165 GLVDGLEWISQ 175 (183)
Q Consensus 165 gi~~~~~~i~~ 175 (183)
|++++|++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=195.93 Aligned_cols=158 Identities=55% Similarity=0.989 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+||+++|++++|||||++++..+.+..+.+|.+.....+......+.+||+||++++...+..+++++|++++|+|+++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999887777777888888777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
.++.....++..+.......+.|+++++||.|+.+.....++.+.+.........+.++++||++|.|++++|+||.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998988876544456899999999999765455555555544433445677899999999999999999975
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=195.62 Aligned_cols=164 Identities=22% Similarity=0.391 Sum_probs=142.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
+.+.+|++++|+.++||||||++++.+.|.. +.+|+|+.+.. +.+ ..+++++|||+||++|+.+.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 3456999999999999999999999998866 67899977654 333 458999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|+|||+++..||.....|+..+.......++.+++|+||.||.+. .++..+++...++..++.|.++||+.|+||++
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence 999999999999999999999999887777999999999999866 44455555555566777899999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|..|...+.+.
T Consensus 176 lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 176 LFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHhccCc
Confidence 999999888765
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=195.83 Aligned_cols=172 Identities=43% Similarity=0.770 Sum_probs=156.5
Q ss_pred HHHhhhcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccC
Q 030113 6 SKFWFMLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRG 84 (183)
Q Consensus 6 ~~~~~~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (183)
+.+++.... ++.++|+++|+.|+||||+++++..+....+.||.|.+...+.+.+..+.+||++|+..++..|..++++
T Consensus 2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~ 81 (175)
T PF00025_consen 2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN 81 (175)
T ss_dssp HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence 445566554 8999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC-CCceEEEEeecccC
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK-NHDWHIQACSALTG 163 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~ 163 (183)
+|++|||+|.++.+.+.+....+..++......++|+++++||.|+.+.....++...+...... ...+.++.||+.+|
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 99999999999999999999999999988777789999999999998888888888888766555 67889999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
+|+.+.++||.+++
T Consensus 162 ~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 162 EGVDEGLEWLIEQI 175 (175)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC
Confidence 99999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=195.27 Aligned_cols=162 Identities=25% Similarity=0.431 Sum_probs=138.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-cCcccceeEEEEE--c--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVEELVY--K--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|+.++|||||+.|+..+.|.++ .+|+|..+..... . .+++++|||+|++++..+-+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 5679999999999999999999999999885 7888866554333 3 489999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||+++.+||.....|+..+-.... +++.+.+|+||+||.. ....++..... ...+..|+++||+++.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yA-----e~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYA-----ESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHH-----HhcCCEEEEEecccccCHH
Confidence 99999999999999999999977655 7888999999999976 33444433333 3356679999999999999
Q ss_pred HHHHHHHHhhhccCC
Q 030113 168 DGLEWISQRVTGKAP 182 (183)
Q Consensus 168 ~~~~~i~~~~~~~~~ 182 (183)
++|..|.+.++...+
T Consensus 157 ~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 157 EIFQAIAEKLPCSDP 171 (200)
T ss_pred HHHHHHHHhccCccc
Confidence 999999999987754
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=184.29 Aligned_cols=179 Identities=40% Similarity=0.720 Sum_probs=161.1
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||.+ +-..+.-.+++.++|+++|..|+||||+++++.+.......||.++++.++.++...+++||++||..++..|.+
T Consensus 1 mg~l-silrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 1 MGLL-SILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred CcHH-HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHH
Confidence 4443 444455556779999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEee
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACS 159 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (183)
||+.+|++|+|+|.+++.++++....+...+......+.|++++.||.|+.......++...+..... +...++++.||
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 99999999999999999999999999999988777778999999999999988888888887776555 67899999999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+.+|+++.+.++|+++.+.++
T Consensus 160 ~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ccccccHHHHHHHHHHHHHHH
Confidence 999999999999999988764
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=194.63 Aligned_cols=166 Identities=45% Similarity=0.780 Sum_probs=139.9
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..-.+...++|+++|++|+|||||++++.+..+....++.+.....+..+...+.+||+||++.+...+..+++++|+++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 33445677999999999999999999999887777778888777777788899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+|++++.++.....++..++......+.|+++|+||+|+.+.....+..+.+.........++++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 99999999999988888888876544567999999999999766555666555544333345778999999999999999
Q ss_pred HHHHHH
Q 030113 170 LEWISQ 175 (183)
Q Consensus 170 ~~~i~~ 175 (183)
|+++++
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999875
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=193.53 Aligned_cols=164 Identities=45% Similarity=0.833 Sum_probs=138.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
||+++|++++|||||++++.+..+..+.+|.+.....+.+....+.+||+||+.++...+..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 58999999999999999999988777778888888778888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
++.+...|+..+.......+.|+++|+||+|+.+.....+..+.+..... ....+.+++|||++|.|++++|+||.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999987654456899999999999766555555555432221 12245789999999999999999999988
Q ss_pred hccCC
Q 030113 178 TGKAP 182 (183)
Q Consensus 178 ~~~~~ 182 (183)
.+..+
T Consensus 161 ~~~~~ 165 (169)
T cd04158 161 VAAGV 165 (169)
T ss_pred hhccc
Confidence 77654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=189.87 Aligned_cols=173 Identities=32% Similarity=0.501 Sum_probs=145.6
Q ss_pred hHHHhhhcC-CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhcc
Q 030113 5 VSKFWFMLF-PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYR 83 (183)
Q Consensus 5 ~~~~~~~~~-~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (183)
+.+++.++. .++.++|+++|++|+|||||++++.++.+..+.++.+.....+..++.++.+||+||+..+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 83 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP 83 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC
Confidence 345566543 3788999999999999999999999887766667777777777788899999999999999999999999
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC-------CCceEEE
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK-------NHDWHIQ 156 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 156 (183)
++|++++|+|++++.++.....++..++......+.|+++|+||.|+.......++.+.++..... .....++
T Consensus 84 ~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 84 EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999999999999998888888888765445679999999999997766777777777644321 2466799
Q ss_pred EeecccCCCHHHHHHHHHHhh
Q 030113 157 ACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+|||+++.|++++++||.+++
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred EeecccCCChHHHHHHHHhhC
Confidence 999999999999999998753
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=191.72 Aligned_cols=164 Identities=22% Similarity=0.356 Sum_probs=136.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
....+||+++|+++||||+++.++..+.+.. ...|+|+.+.. +.. ..+.+++|||+||++++.....|++.|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 3567999999999999999999999998865 56788866644 333 457899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
++|||+++..||+++..|+..+-.+.. .++|.++|+||+|+... ..+....++..+...+++|+++||++|.||++
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 999999999999999998888866644 58999999999998653 22233333333345678899999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
.|-.+++.+.++.
T Consensus 165 aF~~La~~i~~k~ 177 (207)
T KOG0078|consen 165 AFLSLARDILQKL 177 (207)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999888654
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=185.48 Aligned_cols=157 Identities=51% Similarity=0.941 Sum_probs=130.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
||+++|++++|||||++++..+.+....++.+.+...+......+.+|||||+.++...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 58999999999999999998887777778888777777778899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
++.....++...+......+.|+++|+||+|+.+.....++.+.+........+.+++++||+++.|++++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88777777777665444457999999999999765545555555544333344568999999999999999999875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=193.61 Aligned_cols=160 Identities=18% Similarity=0.282 Sum_probs=128.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|+.|+|||||++++..+.+.. +.++.+..+ ..+..+ .+.+++|||+|++++...+..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887754 335555443 233333 478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.+|+.+..|+..+..+. ++.|+++|+||.|+... ....+..... +..++++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999999999988886543 57999999999999643 2222222222 2345679999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++++.+..+.
T Consensus 157 ~~F~~l~~~i~~~~ 170 (189)
T cd04121 157 ESFTELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=194.61 Aligned_cols=159 Identities=19% Similarity=0.296 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++|+++|+.|+|||||++++..+.+.. +.+|.+..+ ..+..+ .+.+++|||+|++++...+..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 478999999999999999999988865 456666444 344554 488999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|+++++||+.+..|+..+... ...+.|+++|+||+|+.+.... .+..+.+.. ...++.+++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~---~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ---QITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH---hcCCCEEEEecCCCCCCHHHHHH
Confidence 999999999998888765433 3457999999999998643221 111111111 11245799999999999999999
Q ss_pred HHHHhhhcc
Q 030113 172 WISQRVTGK 180 (183)
Q Consensus 172 ~i~~~~~~~ 180 (183)
++++.+.++
T Consensus 157 ~l~~~~~~~ 165 (202)
T cd04120 157 KLVDDILKK 165 (202)
T ss_pred HHHHHHHHh
Confidence 999988654
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=181.83 Aligned_cols=164 Identities=24% Similarity=0.390 Sum_probs=141.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCc-ccceeEE----EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT-VGSNVEE----LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||++||.+|+|||||+.++..+.+.+..++ +|+.+.. +..+..++.+|||+||++|+.+.++|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 4569999999999999999999999998776554 7755432 3336789999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||++..++|..+..|+.++-.+...+++..++|+||+|... ...+..+++...++.+.+-|++|||++.+|++..
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999998888888899999999999643 2445556666666777888999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
|+.++..+.+.+
T Consensus 166 FeelveKIi~tp 177 (209)
T KOG0080|consen 166 FEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHhcCc
Confidence 999999998765
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=184.63 Aligned_cols=162 Identities=23% Similarity=0.360 Sum_probs=140.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE----EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE----ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+|+.++|+.|+|||+|+.+++.+.|.+ ...|+|+.+. .++.+.+++++|||+||+.+.....+|++.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 457899999999999999999999999866 5577776653 34446799999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||+++.++|..+..|+..+.++. ..+..+++++||+||... +++..+++..+++.++..++++||++++|++|+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999998875 478999999999998644 355666666666778888999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|..+...+.+.
T Consensus 160 F~nta~~Iy~~ 170 (216)
T KOG0098|consen 160 FINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=184.38 Aligned_cols=158 Identities=46% Similarity=0.775 Sum_probs=129.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc--ccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV--VTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (183)
+|+++|++|+|||||++++.+... ..+.++.+.....+......+.+|||||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 346688887777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 97 RARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+.++.....++..+..... ..+.|+++|+||+|+.+.....++.+.++........++++++||++|.|++++|+||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999888888887765432 24799999999999976555555555554332233456799999999999999999987
Q ss_pred Hh
Q 030113 175 QR 176 (183)
Q Consensus 175 ~~ 176 (183)
++
T Consensus 161 ~~ 162 (162)
T cd04157 161 AQ 162 (162)
T ss_pred cC
Confidence 53
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=195.59 Aligned_cols=161 Identities=22% Similarity=0.283 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+||+++|++|+|||||++++..+.+..+.+|.+..+.........+.+|||+|++.+...+..+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987777888877666666778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC---------------------CCHHHHHhhcCcCc---------
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA---------------------MTPAEITDALSLHS--------- 147 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~---------------------~~~~~~~~~~~~~~--------- 147 (183)
++|..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+......
T Consensus 81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 99999999998886542 356899999999998641 11112111111000
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.....++|++|||++|.||+++|..+++.+.+
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 00123679999999999999999999987653
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=187.30 Aligned_cols=166 Identities=41% Similarity=0.721 Sum_probs=133.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+.+||+++|++|||||||++++..+.+....++.+........ ....+.+|||||++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999988877666777755544433 45889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEeecccCCCHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~~ 169 (183)
|+|++++.++.....++..+.......+.|+++|+||+|+.+.....+....+..... ....++++++||+++.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999889888888887776554567999999999998755444555444432221 223467999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
++++.+.+.+..
T Consensus 162 ~~~l~~~l~~~~ 173 (183)
T cd04152 162 LEKLYEMILKRR 173 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999998886543
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=190.41 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=125.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++..+.+.. +.++.+..+. .+..+ ...+.+|||||++++...+..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 5799999999999999999999888864 5566664443 33343 467899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++.+|..+..|+..+.......+.|+++|+||.|+.+.... .+....+ .+..++++++|||++|.||+++|+
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL----AREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH----HHHhCCEEEEEecCCCCCHHHHHH
Confidence 99999999999887666544333457999999999998543211 1111111 123456899999999999999999
Q ss_pred HHHHhhhcc
Q 030113 172 WISQRVTGK 180 (183)
Q Consensus 172 ~i~~~~~~~ 180 (183)
++++.+.+.
T Consensus 158 ~l~~~~~~~ 166 (172)
T cd04141 158 GLVREIRRK 166 (172)
T ss_pred HHHHHHHHh
Confidence 999887754
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=183.56 Aligned_cols=157 Identities=36% Similarity=0.602 Sum_probs=134.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
+|+++|++|+|||||++++.+.....+.+|.+.....+..+...+++||+||+.++...+..+++++|++++|||+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 47899999999999999999874445778888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC---CCceEEEEeecccC------CCHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK---NHDWHIQACSALTG------DGLVDG 169 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~------~gi~~~ 169 (183)
++.....++..+.......+.|+++|+||.|+.+.....++.+.+...... ...+++++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999998876555679999999999998776666666665543322 23568899999998 899999
Q ss_pred HHHHHH
Q 030113 170 LEWISQ 175 (183)
Q Consensus 170 ~~~i~~ 175 (183)
|+||.+
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=186.82 Aligned_cols=164 Identities=34% Similarity=0.570 Sum_probs=139.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
..+..+|+++|++|+|||||++++.+..+..+.++.+.....+.+.+..+.+||+||+..+...+..+++++|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 35689999999999999999999998887777778887777888888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-----------CCCceEEEEeeccc
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-----------KNHDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~S~~~ 162 (183)
+++.+++.....++..+.......+.|+++++||+|+.......++.+.++.... ....+++++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999899888888888887655567999999999999766666677666653221 12346799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
|+|++++|+|+.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=181.56 Aligned_cols=157 Identities=55% Similarity=0.974 Sum_probs=138.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
||+++|++|+|||||++++.+.......++.+.....+.+....+.+||+||+..+...+..++..+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777888888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
++.....++..+.......+.|+++++||+|+.......++.+.+.........++++++|+++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877655578999999999999876666677776665433456778999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=169.71 Aligned_cols=179 Identities=49% Similarity=0.919 Sum_probs=170.3
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||+-++.+....+..++++|+.+|-.++||||++.++.-+....+.+|+|+++..+.++.+.+.+||++|+.+.+.+|..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78888888888899999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
|+....++|+|+|..+.+.+++.+..+.+++++....+.|+++..||-|+.....++++.+.++....+...+-+.++++
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred ccCCCHHHHHHHHHHhhhc
Q 030113 161 LTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~ 179 (183)
.+|+|+.|-+.|+.+.+.+
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999987653
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=192.49 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=124.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
..+||+++|+.++|||||+.++..+.+.. +.+|.+..+.. +.. ..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999988854 56777654431 222 457899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-HHh--------hcCcCccCCCc-eEEEEeec
Q 030113 92 IDSTDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-ITD--------ALSLHSIKNHD-WHIQACSA 160 (183)
Q Consensus 92 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~~~--------~~~~~~~~~~~-~~~~~~S~ 160 (183)
||++++.||+.+.. |...+... ..+.|+++|+||.|+.+.....+ +.+ ..+.......+ +++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 55545433 25799999999999965422111 111 01111112223 58999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|+|++++|+++++.+...
T Consensus 160 k~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999988764
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=183.45 Aligned_cols=164 Identities=18% Similarity=0.287 Sum_probs=134.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
+..-+||.++|++|+|||||++++....|.. +..|+|..+.. +.. ..+.+++|||+||++|+++-..+++.+|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 4566999999999999999999999998865 66788855543 333 457899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCC---CCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDL---QHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
++|||++++.||+.+..|-.+++.+... ...|+||++||+|+.... ......+..+ ...++|||++|||
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~----s~gnipyfEtSAK 161 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK----SKGNIPYFETSAK 161 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----hcCCceeEEeccc
Confidence 9999999999999999999998866543 358999999999986532 2222222222 2358899999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
+..||+++|+.+......+.
T Consensus 162 ~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 162 EATNVDEAFEEIARRALANE 181 (210)
T ss_pred ccccHHHHHHHHHHHHHhcc
Confidence 99999999999998877654
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=182.04 Aligned_cols=165 Identities=42% Similarity=0.763 Sum_probs=140.0
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
....+.++|+++|++|+|||||++++.+..+....++.+.+...+...+..+.+||+||+..+...+..+++.+|++++|
T Consensus 9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred hccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 34456899999999999999999999998877777888888778888889999999999999988999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+|+++..++.....++..........+.|+++++||+|+.+.....++.+.++........++++++||++|+|++++|+
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence 99999888888888888877655456799999999999976666666666666544444556789999999999999999
Q ss_pred HHHHh
Q 030113 172 WISQR 176 (183)
Q Consensus 172 ~i~~~ 176 (183)
||+++
T Consensus 169 ~l~~~ 173 (173)
T cd04155 169 WVCKN 173 (173)
T ss_pred HHhcC
Confidence 99763
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=189.54 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=125.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+...+||+++|++|+|||||++++..+.+.. +.+|.+..+. .+.. ..+.+.+|||+|++++...+..+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 3567899999999999999999999988865 5567664442 2333 4578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhcCcCccCCCc-eEEEEe
Q 030113 90 VVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---------PAEITDALSLHSIKNHD-WHIQAC 158 (183)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (183)
+|||++++.||..+ ..|+..+.... ++.|+++|+||.|+.+... ...+....+...++..+ .+|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999997 57777665442 5799999999999854210 00111111222223344 489999
Q ss_pred ecccCCC-HHHHHHHHHHhhhc
Q 030113 159 SALTGDG-LVDGLEWISQRVTG 179 (183)
Q Consensus 159 S~~~~~g-i~~~~~~i~~~~~~ 179 (183)
||++|+| |+++|+.+++...+
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 160 SALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHhc
Confidence 9999998 99999999886543
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=180.69 Aligned_cols=157 Identities=44% Similarity=0.766 Sum_probs=130.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+|+++|++|+|||||++++.+..+....++.+.....+.. ....+.+||+||+..+...+..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777888776665555 357899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC-ccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH-SIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
.++.....++..++......+.|+++|+||+|+.......++...+... .....++++++|||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999998888888766544679999999999997655556665554422 22235668999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=187.27 Aligned_cols=160 Identities=23% Similarity=0.247 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++++|||||+.++..+.+.. +.+|.+..+. .+.. ..+++.+|||+|++++...+..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999998865 5677765443 2222 35889999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-------HHHHHhhcCcCccCCCce-EEEEeecccCC
Q 030113 94 STDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-------PAEITDALSLHSIKNHDW-HIQACSALTGD 164 (183)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (183)
+++++||..+ ..|+..+.... .+.|+++|+||.|+.+... ...+....+.......+. ++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 57777765443 4799999999999954311 000111111112222333 69999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030113 165 GLVDGLEWISQRVTG 179 (183)
Q Consensus 165 gi~~~~~~i~~~~~~ 179 (183)
||+++|+.+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999997643
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=189.33 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=128.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-E--EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-E--LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
...+||+++|++|+|||||++++.++.+.. +.++.+..+. . +......+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 456899999999999999999999887754 4566665443 2 22245678899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++.+|+.+..|+..+.......+.|+++|+||.|+.+.. ...+..... ...+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA-----KSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988888765545679999999999985432 221211111 12245799999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
+|+++++.+.+.-
T Consensus 158 ~~~~l~~~l~~~~ 170 (189)
T PTZ00369 158 AFYELVREIRKYL 170 (189)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=187.03 Aligned_cols=160 Identities=23% Similarity=0.372 Sum_probs=127.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE------------cCeEEEEEEcCCChhhHhhHHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY------------KNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~------------~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
+.+||+++|++|||||||++++.++.+.. +.++.+..+.. +.+ ....+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999887755 45666654432 222 2378999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEe
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+++++|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCeEEEE
Confidence 99999999999999999999999999888766544457899999999998643 22222222221 224579999
Q ss_pred ecccCCCHHHHHHHHHHhhhcc
Q 030113 159 SALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
||++|.|++++|+++++.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999887654
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=184.37 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|+.|+|||||++++..+.+.. +.+|.+..+. .+..+ .+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988765 6678876653 34444 478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---PAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
|++++++|..+..|+..+..... ...| ++|+||+|+..... .....+ ......+..+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITK-QARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999888765432 3466 68899999853211 111111 111111233468999999999999999
Q ss_pred HHHHHHhhhccCC
Q 030113 170 LEWISQRVTGKAP 182 (183)
Q Consensus 170 ~~~i~~~~~~~~~ 182 (183)
|+++++.+.+.++
T Consensus 158 f~~l~~~l~~~~~ 170 (182)
T cd04128 158 FKIVLAKAFDLPL 170 (182)
T ss_pred HHHHHHHHHhcCC
Confidence 9999998877554
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=182.06 Aligned_cols=157 Identities=25% Similarity=0.405 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|||||||++++..+.+.. ..++.+.......+ ....+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999998777543 56777766554433 3578999999999998888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+..+.. .....+++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999988888876654 279999999999986433222221111 234567999999999999999999
Q ss_pred HHHhhhccC
Q 030113 173 ISQRVTGKA 181 (183)
Q Consensus 173 i~~~~~~~~ 181 (183)
+++.+.+.+
T Consensus 154 l~~~~~~~~ 162 (166)
T cd00877 154 LARKLLGNP 162 (166)
T ss_pred HHHHHHhcc
Confidence 999987654
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=183.30 Aligned_cols=157 Identities=25% Similarity=0.390 Sum_probs=124.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|+|||||++++.++.+.. ..++.+..+. .+.. ..+++.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 3799999999999999999999888755 3445555443 2333 346889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||++++.+|..+..|+..+.... .++.|+++|+||+|+.... ...+..+.. ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFA-----DENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999988775542 3568999999999986542 222322222 223568999999999999999
Q ss_pred HHHHHHhhhc
Q 030113 170 LEWISQRVTG 179 (183)
Q Consensus 170 ~~~i~~~~~~ 179 (183)
|.++++.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=180.04 Aligned_cols=155 Identities=32% Similarity=0.521 Sum_probs=129.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
.|+++|++|+|||||++++.++.+.. +.+|.+.....+.....++.+||+||++++...+..+++++|++++|||++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 37899999999999999999886644 56787877777777889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC-ccCCCceEEEEeeccc------CCCHHHHH
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH-SIKNHDWHIQACSALT------GDGLVDGL 170 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~------~~gi~~~~ 170 (183)
.++.....|+..+.... .++|+++|+||.|+.......++...+... .....+++++++||++ ++|++++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 99999988888886543 579999999999997666555554444322 2244578899999998 99999999
Q ss_pred HHHHH
Q 030113 171 EWISQ 175 (183)
Q Consensus 171 ~~i~~ 175 (183)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=185.02 Aligned_cols=160 Identities=22% Similarity=0.322 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc---CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK---NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+... .+.+.+|||||++++...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999887755 5577765432 33333 57899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 92 IDSTDRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
||++++.+|..+..|+..+.... ...+.|+++|+||.|+.+ .....+..+..... ...+++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 99999999999988877664321 235689999999999963 33333433333211 1247999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
+++|+++++.+.+..
T Consensus 157 ~e~f~~l~~~l~~~~ 171 (201)
T cd04107 157 EEAMRFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887653
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=172.94 Aligned_cols=156 Identities=24% Similarity=0.401 Sum_probs=130.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+|++|+|+..+|||||+.++++..|.. ...|.|+.+.-... +.+++++|||+|+++++.+.-.++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 45799999999999999999999998865 66788876543322 46899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-----HHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-----PAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|||+++.+||..+..|...+.. ....+.|+|+++||+|+.++.. ...+.+.+ +..||++||+.+.|
T Consensus 100 myDitNeeSf~svqdw~tqIkt-ysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~L--------GfefFEtSaK~Nin 170 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKT-YSWDNAQVILVGNKCDMDSERVISHERGRQLADQL--------GFEFFETSAKENIN 170 (193)
T ss_pred EEecCCHHHHHHHHHHHHHhee-eeccCceEEEEecccCCccceeeeHHHHHHHHHHh--------ChHHhhhccccccc
Confidence 9999999999999999988854 4678899999999999976532 22333333 44699999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++.+|+.++..+-+.
T Consensus 171 Vk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 171 VKQVFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877654
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=178.37 Aligned_cols=157 Identities=43% Similarity=0.684 Sum_probs=129.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc-------ccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV-------VTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+|+++|++|+|||||++++.+... ..+.++.+.....+.+++..+.+|||||+..+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975422 2345677777777888899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc--cCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS--IKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+++++++.....++..+.......+.|+++++||+|+.+.....+..+.+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887765556799999999999876655555555544322 1234678999999999999999
Q ss_pred HHHHHH
Q 030113 170 LEWISQ 175 (183)
Q Consensus 170 ~~~i~~ 175 (183)
++||++
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=182.20 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=124.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++..+.+.. +.++.+..+. .+... ...+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 3689999999999999999999877654 4455553322 33333 467789999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++..+++.+..|+..+.......+.|+++|+||+|+.+... ..+. +.+. +..+++++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA----RQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH----HHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999999887665556799999999999965322 1221 1121 1223579999999999999999
Q ss_pred HHHHHhhh
Q 030113 171 EWISQRVT 178 (183)
Q Consensus 171 ~~i~~~~~ 178 (183)
.++++.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=180.83 Aligned_cols=161 Identities=24% Similarity=0.352 Sum_probs=124.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
||+++|++|+|||||+++++++.+.. +.++.+..+. .+... ..++++|||||++++...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998864 5577765553 23333 4689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
++++.++..+..|+..+.........|+++|+||.|+.+........+. ........+.+++++||++|.|++++|+.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQD-AIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHH-HHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999998888766544345789999999998543221100100 001111223579999999999999999999
Q ss_pred HHhhhcc
Q 030113 174 SQRVTGK 180 (183)
Q Consensus 174 ~~~~~~~ 180 (183)
++.+.+.
T Consensus 161 ~~~~~~~ 167 (170)
T cd04108 161 AALTFEL 167 (170)
T ss_pred HHHHHHc
Confidence 9987654
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=182.10 Aligned_cols=156 Identities=19% Similarity=0.281 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce-eEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN-VEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++..+.+.. +.++.+.. ...+..+ ...+.+|||||++++...+..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999887754 34444422 2334343 3678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+....+.. ..+.+++++||+++.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR----QWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999998888876555567999999999998643211 111111211 12368999999999999999999
Q ss_pred HHHhh
Q 030113 173 ISQRV 177 (183)
Q Consensus 173 i~~~~ 177 (183)
+++.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98865
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=183.71 Aligned_cols=158 Identities=21% Similarity=0.244 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc-cccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++..+.+. .+.+|.+..+. .+..++ +.+.+|||+|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 78999999999999999999998884 45677765543 333443 788999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-H--------HhhcCcCccC-CCceEEEEeeccc
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-I--------TDALSLHSIK-NHDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~--------~~~~~~~~~~-~~~~~~~~~S~~~ 162 (183)
++++++|+.+.. |+..+... .++.|+++|+||.|+.+.....+ + ....+..... ...+++++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 55555433 25799999999999854321100 0 0000111111 2236899999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
|.|++++|+.+++..
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=186.18 Aligned_cols=158 Identities=23% Similarity=0.369 Sum_probs=129.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|++|||||||++++..+.+.. +.++.+..+....+ ..+.+.+|||+|++++...+..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 677999999999999999999998887754 66788766654433 3579999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|||++++.+|..+..|+..+.... .+.|+++|+||+|+..... ..+. +.. ...++++++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHH-----HhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999999988876542 5799999999999854322 2222 111 22456799999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|+++++.+.+.
T Consensus 163 ~f~~l~~~~~~~ 174 (219)
T PLN03071 163 PFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHcC
Confidence 999999988754
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=184.70 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=120.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++||+++|++|+|||||++++.++.++. +.+|.+..+. .+.. ..+.+.+|||+|++.+......+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 3789999999999999999999988765 4566654432 2233 4578999999999999999999999999999999
Q ss_pred eCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhcCcCccCCCce-EEEEeecc
Q 030113 93 DSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---------PAEITDALSLHSIKNHDW-HIQACSAL 161 (183)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S~~ 161 (183)
|+++++||+.+ ..|+..+.... ++.|+++|+||.|+.+... ...+....+...++..++ +|++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 56776665442 5799999999999854210 000111112222233343 79999999
Q ss_pred cCCC-HHHHHHHHHHhhh
Q 030113 162 TGDG-LVDGLEWISQRVT 178 (183)
Q Consensus 162 ~~~g-i~~~~~~i~~~~~ 178 (183)
+|+| |+++|..+++...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988544
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=189.55 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=124.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
...+||+++|+.|||||||++++..+.+.. +.+|++..+.. +.. ..+.+.+|||+|++.+......+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 356899999999999999999999988765 45676654432 222 45889999999999999999999999999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhcCcCccCCCce-EEEEee
Q 030113 91 VIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---------PAEITDALSLHSIKNHDW-HIQACS 159 (183)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (183)
|||++++.+|..+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ +|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999985 67777765432 4689999999999853210 011111112222233445 699999
Q ss_pred cccCC-CHHHHHHHHHHhhhcc
Q 030113 160 ALTGD-GLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~-gi~~~~~~i~~~~~~~ 180 (183)
|++|+ |++++|+.++..+.++
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99998 8999999999877654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=186.32 Aligned_cols=159 Identities=27% Similarity=0.481 Sum_probs=127.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+||+++|++|+|||||++++.++.+.. ..++.+..+.. +.. ..+.+++|||+|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988765 44666654432 333 24689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++++|+.+..|+..+.........|+++|+||.|+.+... ..+. +.+. +..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999999887654445688999999999865322 2222 2221 22346899999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|++|++.+.++
T Consensus 157 ~f~~l~~~~~~~ 168 (211)
T cd04111 157 AFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=179.66 Aligned_cols=158 Identities=20% Similarity=0.347 Sum_probs=126.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|+|||||++++.+..+.. +.++.+..+. .+... ...+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999988755 4566665443 33333 3688999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+.+++++||+++.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999998888776542 3578999999999996532 222222222 12345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
+|+++++.+.+
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=179.09 Aligned_cols=156 Identities=22% Similarity=0.381 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ....+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 699999999999999999999988754 4566665443 2322 3478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... ..+..+.. ...+++++++||+++.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999888875432 34689999999999865422 22222211 1234579999999999999999
Q ss_pred HHHHHhhhc
Q 030113 171 EWISQRVTG 179 (183)
Q Consensus 171 ~~i~~~~~~ 179 (183)
+++++.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987653
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=176.95 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=122.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++.++.+.. +.++.+..+ ..+..+ ...+.+|||+|++++...+..++++++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999999887654 445554332 223333 356889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|+++..++..+..|+..+.......+.|+++|+||+|+.+... ..+..... +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999988888887665556799999999999865322 22222221 12345799999999999999999
Q ss_pred HHHHhh
Q 030113 172 WISQRV 177 (183)
Q Consensus 172 ~i~~~~ 177 (183)
++++.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=178.59 Aligned_cols=154 Identities=19% Similarity=0.330 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++|+++|++|+|||||++++.++.+.. +.++.+..+. .+... ...+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999888755 4677775543 34443 367899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++++|..+..|+..+.... ..+.|+++|+||.|+...... .+....+. +..+.+++++||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999888776542 346999999999998654321 12222222 22335799999999999999999
Q ss_pred HHHHh
Q 030113 172 WISQR 176 (183)
Q Consensus 172 ~i~~~ 176 (183)
+|++.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=176.35 Aligned_cols=156 Identities=23% Similarity=0.355 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. +.++.+..+. .+.. ....+.+|||||++.+...+..+++++|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988754 4566665443 2333 3578899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCC----CCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDL----QHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~----~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
|++++.++..+..|+..+...... .+.|+++|+||+|+.+. ....+..... ...+.+++++||+++.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 999999999998888888665432 56999999999998632 2222222221 122357999999999999
Q ss_pred HHHHHHHHHhhh
Q 030113 167 VDGLEWISQRVT 178 (183)
Q Consensus 167 ~~~~~~i~~~~~ 178 (183)
+++|+++.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=170.62 Aligned_cols=160 Identities=24% Similarity=0.361 Sum_probs=134.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.-+||+++|+.|+|||+|++++..+-|++ ...|+|+.+.. +.. +.+++++|||+|+++|++...+|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 34899999999999999999999998876 66788866543 333 56899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|||++...+|+.+..|+.++-++.. ..+--|+|+||.|+.+. .++.+..+....+.....|.++||++.+|++.+|
T Consensus 86 vydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 9999999999999999999976543 45777999999998654 4455555555555566679999999999999999
Q ss_pred HHHHHhhhc
Q 030113 171 EWISQRVTG 179 (183)
Q Consensus 171 ~~i~~~~~~ 179 (183)
..+...+..
T Consensus 162 ~~~a~rli~ 170 (213)
T KOG0095|consen 162 LDLACRLIS 170 (213)
T ss_pred HHHHHHHHH
Confidence 998877654
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=168.54 Aligned_cols=161 Identities=24% Similarity=0.373 Sum_probs=132.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE----EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE----LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.-+|++++|+.|+|||+|++++..+.+.. .+.|+|+.+.. +-.+.+++++|||+||++|+....+|++.+.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 34799999999999999999999888754 67788866533 33367999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|||+++.++|+.+.+|+...... ..+++-+++++||.|+.+.. ++...++..+.......+.++|+++|+|++|.|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R---~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPER---EVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhh---hhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 99999999999999999998654 34778999999999997653 333333334444555679999999999999999
Q ss_pred HHHHHhhhcc
Q 030113 171 EWISQRVTGK 180 (183)
Q Consensus 171 ~~i~~~~~~~ 180 (183)
-...+.+..+
T Consensus 164 l~c~~tIl~k 173 (214)
T KOG0086|consen 164 LKCARTILNK 173 (214)
T ss_pred HHHHHHHHHH
Confidence 8877766543
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=185.74 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=122.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+|+|++|||||||++++..+.++. +.+|.+..+. .+.. ..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 3799999999999999999999988865 5677765553 2333 4578999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HH--------HHhhcCcCccCCCc-eEEEEeeccc
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AE--------ITDALSLHSIKNHD-WHIQACSALT 162 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (183)
|++++++|+.+..+|....... .++.|+++|+||+|+.+.... .+ +....+....+..+ .+|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999976565544332 357999999999999653210 00 11111112222334 4899999999
Q ss_pred CCC-HHHHHHHHHHhhhcc
Q 030113 163 GDG-LVDGLEWISQRVTGK 180 (183)
Q Consensus 163 ~~g-i~~~~~~i~~~~~~~ 180 (183)
+.| |+++|+..+....++
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 985 999999988865553
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=184.12 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
||+++|++|+|||||++++..+.+.. +.++.+..+. ..... ...+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999887755 4455554332 23333 35689999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
++.++|+.+..|+..+..... ..+.|+++|+||+|+..... ..+.. .+. ...+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-ALA----RRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HHH----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999888877755432 35789999999999864322 22211 111 2234579999999999999999
Q ss_pred HHHHHhhhccC
Q 030113 171 EWISQRVTGKA 181 (183)
Q Consensus 171 ~~i~~~~~~~~ 181 (183)
+++++.+.++.
T Consensus 156 ~~l~~~l~~~~ 166 (190)
T cd04144 156 YTLVRALRQQR 166 (190)
T ss_pred HHHHHHHHHhh
Confidence 99999887654
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=179.15 Aligned_cols=157 Identities=18% Similarity=0.278 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++.+..+.. ..++....+ ..... ....+.+|||||++++...+..+++++|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887654 233333222 22223 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+++++++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999998888877665444579999999999986532 112221111 11236899999999999999999
Q ss_pred HHHHhhhc
Q 030113 172 WISQRVTG 179 (183)
Q Consensus 172 ~i~~~~~~ 179 (183)
++++.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99988764
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=178.34 Aligned_cols=162 Identities=23% Similarity=0.368 Sum_probs=135.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEE----EcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELV----YKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+-+||+++|++++|||-|+.++..++|.. ..+|+|+...... .+.++.++|||+||++++.....|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 456899999999999999999999999865 6688887765433 35689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||++...+|+++..|+.++..+.. .++++++|+||+||... +.+..+.+...+...+..++++||.++.|++++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999998865 58999999999999652 222333333333445567999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|+.++..+.+.
T Consensus 168 F~~~l~~I~~~ 178 (222)
T KOG0087|consen 168 FERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHHH
Confidence 99988877653
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=182.63 Aligned_cols=160 Identities=24% Similarity=0.342 Sum_probs=127.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. +.+|.+..+. .+... ...+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 356999999999999999999999888754 5567665543 33333 367899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++++|..+..|+..+.... ...|+++|+||+|+.+... ..+..... ...+.+++++|+++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999999988876543 5689999999999865422 12222211 1223679999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++.+.+.+.+
T Consensus 157 ~lf~~l~~~~~~~~ 170 (199)
T cd04110 157 EMFNCITELVLRAK 170 (199)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=179.23 Aligned_cols=157 Identities=17% Similarity=0.259 Sum_probs=121.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccc-cCccc-ceeEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVG-SNVEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++..+.+... .++.+ .....+..+ ...+.+|||||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999998887653 34443 222233333 457889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-HHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-EITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++.+|..+..|+..+.......+.|+++|+||+|+.+..... +....+. ...+.+++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999988888765444679999999999985432211 1112221 12235799999999999999999
Q ss_pred HHHHhh
Q 030113 172 WISQRV 177 (183)
Q Consensus 172 ~i~~~~ 177 (183)
++++.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998865
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=179.14 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=121.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++.+..+.. ..++.+..+. ..... ...+.+|||||++++...+..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998877643 3344443222 22233 367899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++..++..+..|+..+.......+.|+++++||+|+..... ..+..+.. +..+.+++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA-----RKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH-----HHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999888887654456799999999999864321 12221111 1234579999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++++.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998875
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-31 Score=171.60 Aligned_cols=156 Identities=33% Similarity=0.601 Sum_probs=130.9
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
|+++|++|+|||||++++.+.++.. +.++.+.....+......+.+||+||+..+...+..+++.+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7899999999999999999987754 567778777777777899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
++.....++..........+.|+++|+||+|+.+.....+..............++++++|++++.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888876555567999999999998766554455445443333345678999999999999999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=177.65 Aligned_cols=157 Identities=24% Similarity=0.379 Sum_probs=124.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|+|||||++++.++.+.. +.++.+..+ ..+... ...+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 4799999999999999999999887754 445555443 233333 46789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||++++++|..+..|+..+.... ..+.|+++|+||.|+..... ..+..... ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888875543 35689999999999854322 22222222 123568999999999999999
Q ss_pred HHHHHHhhhc
Q 030113 170 LEWISQRVTG 179 (183)
Q Consensus 170 ~~~i~~~~~~ 179 (183)
|+++++.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=177.41 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|||||||+.++..+.+.. +.++.+..+. .+.. ...++.+|||+|++.+...+..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 689999999999999999999888754 4555543322 2233 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHh--------hcCcCccCC-CceEEEEeeccc
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITD--------ALSLHSIKN-HDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~--------~~~~~~~~~-~~~~~~~~S~~~ 162 (183)
++++++|..+.. |+..+... ..+.|+++|+||.|+.+... .....+ ..+...... ...++++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999875 55544433 25799999999999854321 111100 000011111 234799999999
Q ss_pred CCCHHHHHHHHHHh
Q 030113 163 GDGLVDGLEWISQR 176 (183)
Q Consensus 163 ~~gi~~~~~~i~~~ 176 (183)
|+|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999874
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=184.23 Aligned_cols=158 Identities=22% Similarity=0.309 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc---CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK---NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+... ...+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999888755 4567765543 33332 47899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
||++++++|..+..|+..+..... ..+.|+++|+||.|+.+.. ...+..+ +. ...+++++++||++|+|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-~~----~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-FA----QANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-HH----HHcCCEEEEEECCCCCCHH
Confidence 999999999999888887765432 2357899999999986432 2222221 11 1234579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++++.+...
T Consensus 156 ~lf~~l~~~l~~~ 168 (215)
T cd04109 156 LLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=176.01 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc-CcccceeEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
+||+++|+.|+|||||+.++..+.+.... ++.+.....+..++ ..+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 48999999999999999999888776533 33333334455554 6799999999975 2456889999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEeecccCCCHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+++.||..+..|+..+.......+.|+++|+||.|+..... .++...++.... ....++|++|||++|.||+++|+.+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~-~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP-RVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC-cccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999999998887665556799999999999843111 111111111111 1234689999999999999999999
Q ss_pred HHhh
Q 030113 174 SQRV 177 (183)
Q Consensus 174 ~~~~ 177 (183)
++.+
T Consensus 155 ~~~~ 158 (158)
T cd04103 155 AQKI 158 (158)
T ss_pred HhhC
Confidence 8653
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=182.93 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ....+.+|||+|++.+...+..+++++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 379999999999999999999988865 4566654443 2223 34789999999999998888899999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHh---------hcCcCcc-CCCceEEEEeeccc
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITD---------ALSLHSI-KNHDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~S~~~ 162 (183)
++++.+|..+.. |+..+... ..+.|+++|+||+|+.......+... ..+.... ....+++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998864 66666543 24799999999999965432211100 0011111 12236799999999
Q ss_pred CCCHHHHHHHHHHhhhccC
Q 030113 163 GDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~~ 181 (183)
|.|++++|+++++.+....
T Consensus 159 ~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 159 NRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999887644
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=170.34 Aligned_cols=162 Identities=23% Similarity=0.384 Sum_probs=136.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--E---EEcCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--L---VYKNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..++++.+||++-+|||||++.+..+.+++ ..||+|+++.. + ....+++++|||+||+++++...+|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 467999999999999999999999999987 56888876532 2 22458999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCC-CeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQH-SVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
++|||+++.+||+.+.+|+.+...+...+. +-+.+|++|+|+... .++..++++..++..+..|+++|+++|.|++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999999877666444 555789999999754 3444445555556788899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
|.|..+.+.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=180.39 Aligned_cols=158 Identities=22% Similarity=0.395 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--cccCcccceeEE--EEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVGSNVEE--LVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~~~~~~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+||+++|++|+|||||++++.++.+. .+.++.+..+.. +..+ ...+.+|||||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988874 345566554432 3333 47899999999999999899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+++.++++++..|+..+.... ..+.|+++|+||+|+.... ...+..... ...+.+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999998888776543 3468999999999986432 222222221 122457999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
|+++++.+.+..
T Consensus 155 ~~~l~~~~~~~~ 166 (191)
T cd04112 155 FTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=173.56 Aligned_cols=159 Identities=20% Similarity=0.325 Sum_probs=124.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|++|+|||||++++.++.+.. ..++.+.... .+.. ....+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 456999999999999999999999887755 4566665532 3333 3477899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCC---CCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHED---LQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+|||+++++++..+..|...+..... ..+.|+++|+||+|+... ....+..+.... ....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence 99999999999999888877665332 246899999999998532 233333333221 2234799999999999
Q ss_pred HHHHHHHHHHhh
Q 030113 166 LVDGLEWISQRV 177 (183)
Q Consensus 166 i~~~~~~i~~~~ 177 (183)
++++|+++++.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=182.38 Aligned_cols=164 Identities=25% Similarity=0.383 Sum_probs=127.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.....+||+++|++|+|||||++++.+..+....++.+.... .+..+ ...+.+|||||++++...+..+++.+|++
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 345679999999999999999999998887777777776543 33333 46889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhC-CCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLG-HEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
++|||++++++|..+...|...+. .....+.|+++|+||+|+..... ..+..... ...+++++++||+++.|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA-----KEHGCLFLECSAKTREN 164 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999999998875554443 22234689999999999864322 22222111 12345799999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++|+++.+.+.+.+
T Consensus 165 v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 165 VEQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887654
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-31 Score=172.80 Aligned_cols=156 Identities=23% Similarity=0.310 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc-cCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.+. .++.+.... .... ....+.+|||+|++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998877543 344443322 2222 3568899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|++++.++..+..|+..+... .++.|+++|+||+|+.... ..+.. .+. ...+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NFA----EKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999988888777543 2468999999999985321 11111 111 123468999999999999999999
Q ss_pred HHHhhhccC
Q 030113 173 ISQRVTGKA 181 (183)
Q Consensus 173 i~~~~~~~~ 181 (183)
+++.+.+++
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999887763
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=179.35 Aligned_cols=158 Identities=24% Similarity=0.399 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998865 5677765443 3333 3467899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++++|..+..|+..+.... ..+.|+++|+||.|+.+.... .+....+. ...+++++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999888776543 245899999999998643211 11111221 12345799999999999999999
Q ss_pred HHHHhhhcc
Q 030113 172 WISQRVTGK 180 (183)
Q Consensus 172 ~i~~~~~~~ 180 (183)
++++.+.++
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999988764
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-32 Score=168.67 Aligned_cols=157 Identities=24% Similarity=0.359 Sum_probs=128.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++.+|+|++|+|||+|+-++..+.|.. +..|+|+... .+.. ..+++++||++|++.|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 567899999999999999999998877 4466675543 3333 5689999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|+++.+||.+...|+.++.+.. +..|-++|+||.|..+... +....+..++...++.+|++|+++++|++.+|..
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~Rrv---V~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRV---VDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCcccee---eehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999997654 4789999999999865321 1222222333445677999999999999999999
Q ss_pred HHHhhhc
Q 030113 173 ISQRVTG 179 (183)
Q Consensus 173 i~~~~~~ 179 (183)
|.+++..
T Consensus 164 it~qvl~ 170 (198)
T KOG0079|consen 164 ITKQVLQ 170 (198)
T ss_pred HHHHHHH
Confidence 9887654
|
|
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=176.37 Aligned_cols=155 Identities=14% Similarity=0.197 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-E--EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-L--VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+.. + ......+.+|||||++++...+..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 789999999999999999999988754 34555433322 2 2245788999999999999988899999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
+++++++..+..|+..+.... ...+.|+++|+||+|+.+.... .+...... ....++++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA----TEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH----HHhCCcEEEeecCCCCCHHHHH
Confidence 999999999888876554322 2357999999999998652211 11111111 2234579999999999999999
Q ss_pred HHHHHh
Q 030113 171 EWISQR 176 (183)
Q Consensus 171 ~~i~~~ 176 (183)
++|++.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-31 Score=174.59 Aligned_cols=156 Identities=24% Similarity=0.405 Sum_probs=123.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|+|||||++++.+..+.. +.++.+..+. .+...+ ..+.+||+||++.+...+..++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 34799999999999999999999888653 5566665443 333333 678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|+|++++.++..+..|+..+.... ..+.|+++|+||.|+.... ..++...... ..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHH
Confidence 999999999999998888776543 2468999999999986432 2222222221 2346799999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+|+++.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998875
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=176.28 Aligned_cols=158 Identities=25% Similarity=0.417 Sum_probs=123.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhH-hhHHhhccCCCEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLR-TSWATYYRGTHAVIV 90 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~ 90 (183)
.++|+++|++|+|||||++++....+.. +.++.+..+. .+... ...+.+||++|++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999887754 4566654432 33333 3789999999999886 568888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeeccc---CCCH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALT---GDGL 166 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~---~~gi 166 (183)
|||++++.++..+..|+..+.......+.|+++|+||+|+...... .+..+.+. ....++++++||++ +.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999998888776655567999999999998643321 22222222 22346799999999 8999
Q ss_pred HHHHHHHHHhhh
Q 030113 167 VDGLEWISQRVT 178 (183)
Q Consensus 167 ~~~~~~i~~~~~ 178 (183)
+++|..+++.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-31 Score=174.76 Aligned_cols=158 Identities=23% Similarity=0.328 Sum_probs=124.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|+|||||++++.+..+.. ..++.+.... .+.. ....+.+||+||++++......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999887654 3445554432 2333 34689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|+|++++.++..+..|+..+.... .++.|+++|+||.|+.+.. ...+...... ..+.+++++|++++.|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 999999999999999888776543 3679999999999986432 2333322221 2345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
+|.++.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=171.73 Aligned_cols=157 Identities=24% Similarity=0.381 Sum_probs=122.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+.+||+++|++|+|||||++++..+.+.. ..++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999998877655 33555433 34444444 688999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+... ..+...... ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 999999999999988888876542 35799999999999864421 222222211 12234689999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+|+++.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998764
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-31 Score=162.39 Aligned_cols=165 Identities=28% Similarity=0.532 Sum_probs=154.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+.+..+.++|-.++|||||++.++.+.+.+ ..|+.|++...++-+.+.+.+||.|||..++..|..|++.+++++||+|
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 677899999999999999999999887765 7799999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+.+++.+...+..+..++......++|+++.+||.|+........+.+.++........+-+|.+|+++..|++...+|+
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 99999999999999999999888999999999999999988889999999988888888899999999999999999999
Q ss_pred HHhhhc
Q 030113 174 SQRVTG 179 (183)
Q Consensus 174 ~~~~~~ 179 (183)
+++-..
T Consensus 178 i~hsk~ 183 (186)
T KOG0075|consen 178 IEHSKS 183 (186)
T ss_pred HHHhhh
Confidence 987544
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-31 Score=178.77 Aligned_cols=161 Identities=20% Similarity=0.275 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc--ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT--THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~--~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+. .+..+ .+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988753 6667765442 33343 36778999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
||++++.+++.+..|+..+... ..+.|+++|+||+|+.+... ...+............+.+++++||+++.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999988888777553 24789999999999854321 01110000001112234579999999999999999
Q ss_pred HHHHHhhhcc
Q 030113 171 EWISQRVTGK 180 (183)
Q Consensus 171 ~~i~~~~~~~ 180 (183)
+++.+.+.++
T Consensus 159 ~~i~~~~~~~ 168 (193)
T cd04118 159 QKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHh
Confidence 9999988654
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=174.11 Aligned_cols=154 Identities=26% Similarity=0.417 Sum_probs=120.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.. ..++.+..+. .+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999887644 4455554433 2233 3468899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++..+..|+..+.... .++.|+++|+||.|+.... ...+...... ..+++++++|++++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 9999999999988888765432 3679999999999986432 2222222222 223679999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998764
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-31 Score=180.91 Aligned_cols=160 Identities=25% Similarity=0.389 Sum_probs=128.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|++|+|||||++++.+..+.. +.++.+..+. .+..+ .+.+.+||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 456899999999999999999999888753 5577776543 33333 478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.... .+....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998888776543 357999999999998643321 22222222 22356899999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
+|+++++.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999988755
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=174.77 Aligned_cols=152 Identities=22% Similarity=0.377 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc----CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK----NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+||+++|++|+|||||++++.++.+.. ..++.+..+. .+... ..++.+|||||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999887654 4566665543 23332 5789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||+++++++..+..|+..+... ..+.|+++|+||.|+..+.. .++...... ..+++++++|++++.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAK-----RLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCHHH
Confidence 99999999999998888777543 25799999999999865322 222222221 2245799999999999999
Q ss_pred HHHHHHHh
Q 030113 169 GLEWISQR 176 (183)
Q Consensus 169 ~~~~i~~~ 176 (183)
+++++.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-31 Score=176.80 Aligned_cols=151 Identities=25% Similarity=0.377 Sum_probs=122.4
Q ss_pred EcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 23 VGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 23 iG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+|++|||||||+++++.+.+.. +.+|.+..+....+ ..+++.+|||+|++++..++..+++++|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999887764 56787766654433 358999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
.+|..+..|+..+.... .+.|+++|+||+|+.......+..+ .....++++++|||++|.||+++|+++++.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-----FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998888786543 5799999999999854322111111 1123456899999999999999999999988
Q ss_pred hcc
Q 030113 178 TGK 180 (183)
Q Consensus 178 ~~~ 180 (183)
.+.
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 664
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=170.33 Aligned_cols=155 Identities=28% Similarity=0.414 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+.++.. +.. ....+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999887654 55666654432 233 3478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++.++..+..|+..+..+....+.|+++|+||+|+.... ...+...... ..+++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHHHH
Confidence 999999999998888877766666789999999999986332 2333222221 2356799999999999999999
Q ss_pred HHHHhh
Q 030113 172 WISQRV 177 (183)
Q Consensus 172 ~i~~~~ 177 (183)
++.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=169.86 Aligned_cols=155 Identities=25% Similarity=0.431 Sum_probs=124.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|+|||||++++.++.+.. ..++.+..+ ..+.. ....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998766 566666433 23333 357889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+++++++.....|+..+..... ...|+++++||+|+.... ...+...... ..+.+++++|+++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999998888876543 679999999999986322 2223222221 12357999999999999999
Q ss_pred HHHHHHhh
Q 030113 170 LEWISQRV 177 (183)
Q Consensus 170 ~~~i~~~~ 177 (183)
++++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=172.59 Aligned_cols=157 Identities=26% Similarity=0.469 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+..+. .+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999887644 4455554433 344433 68899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|++++++++.+..|+..+..+.. .+.|+++|+||+|+.... ......+.. ...+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFA-----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999888887765543 579999999999986532 222222221 1234579999999999999999
Q ss_pred HHHHHhhhcc
Q 030113 171 EWISQRVTGK 180 (183)
Q Consensus 171 ~~i~~~~~~~ 180 (183)
+++.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988764
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=176.75 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ..+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999988754 4455554432 2222 2468999999999999999999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCC------CHHHHHhhcCcCccCCCce-EEEEeecccCC
Q 030113 93 DSTDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAM------TPAEITDALSLHSIKNHDW-HIQACSALTGD 164 (183)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (183)
|++++++|+.+.. |+..+... ..+.|+++|+||.|+.... ...+..+.. ...+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA-----KKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH-----HHcCCcEEEEccCCCCC
Confidence 9999999998875 55444332 2578999999999986432 122221111 11223 79999999999
Q ss_pred CHHHHHHHHHHhhhcc
Q 030113 165 GLVDGLEWISQRVTGK 180 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~ 180 (183)
|++++|+.+++.+...
T Consensus 154 ~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 154 NVEEVFDTAIEEALKK 169 (187)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887764
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=176.24 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhH--------hhHHhhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLR--------TSWATYYRG 84 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~--------~~~~~~~~~ 84 (183)
+||+|+|++|||||||++++.++.+.. +.++.+... ..+..++ ..+.+|||||..++. .....++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988765 455555332 2334444 678899999965431 113345789
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeec
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+|++++|||+++++||+.+..|+..+.... ...+.|+++|+||+|+.... ...+..+... +..++++++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecC
Confidence 999999999999999999988888876653 24679999999999995532 1222211111 123568999999
Q ss_pred ccCCCHHHHHHHHHHhhhccCC
Q 030113 161 LTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++|.|++++|+.+++.+..+.+
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 157 KYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccCC
Confidence 9999999999999988776544
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=177.24 Aligned_cols=156 Identities=14% Similarity=0.169 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc-ceeEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG-SNVEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||+++++++.+.. +.+|.+ .....+..+ .+.+.+|||+|++.+...+..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 589999999999999999999888764 445554 223334443 4788999999999998888888999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCC--------CCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 94 STDRARISIMKDELFRLLGHE--------DLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
+++.++|+.+..|+..+.... ...+.|+++|+||+|+.. .....++.+.... ...++++++||+++
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999988888876431 235799999999999864 3344444444331 12457999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++|+++++.+
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999855
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=168.56 Aligned_cols=154 Identities=21% Similarity=0.371 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+..+ ..+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999887654 345555433 3343433 67999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++..+..|+..+..... .+.|+++++||+|+.+.. ...+..... +..+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988888765432 369999999999984322 222222221 1234679999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=173.62 Aligned_cols=154 Identities=27% Similarity=0.424 Sum_probs=125.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
||+++|++++|||||++++.++.+.. +.++.+..... +.. ..+.+.+||++|++++......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988765 45666555443 333 45789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+++++||..+..|+..+..... .+.|+++++||.|+.+ ....++..+.. ...+.+|+++|++++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988888766543 5699999999999875 33333332222 12236899999999999999999
Q ss_pred HHHHhhh
Q 030113 172 WISQRVT 178 (183)
Q Consensus 172 ~i~~~~~ 178 (183)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=171.25 Aligned_cols=154 Identities=20% Similarity=0.277 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC--Cccc-ccCcccceeE--EEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG--EVVT-THPTVGSNVE--ELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~--~~~~-~~~~~~~~~~--~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+||+++|++|+|||||++++..+ .+.. +.++.+..+. .+.. ....+.+|||||++.+...+..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 4443 4566665442 2222 3489999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-ITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+...... ..+.+. ...+.+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888887776543 5689999999999865432211 111221 12245799999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+|+++.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=168.34 Aligned_cols=160 Identities=20% Similarity=0.326 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+..+ ..+... ...+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999887644 334555433 233343 467789999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCC---CCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 93 DSTDRARISIMKDELFRLLGHED---LQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
|+++++++.....|...+..... ..+.|+++|+||+|+.. .....+...... .....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence 99999998888777666544322 34799999999999973 223333333322 1223579999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++++++.+.+.++.
T Consensus 157 ~l~~~i~~~~~~~~ 170 (172)
T cd01862 157 QAFETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887654
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=168.19 Aligned_cols=155 Identities=16% Similarity=0.116 Sum_probs=121.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc--cccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~--~~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
++.+||+++|++|||||||++++.++.+. .+.+|.+..+ ..+..++ ..+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999998875 3557766543 2344433 6789999999999988889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-----HHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-----PAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
++|+|++++.++..+..|+..+... .+.|+++|+||.|+.+... ..++.+.++ ...++++||+++
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG-------LPPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcC-------CCCCEEEEeccC
Confidence 9999999999998887777755322 3699999999999854321 122222111 113689999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030113 164 DGLVDGLEWISQRVTG 179 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~ 179 (183)
.|++++|+.+++.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999998875
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=161.77 Aligned_cols=180 Identities=46% Similarity=0.826 Sum_probs=163.6
Q ss_pred CchhhHHHhhhcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHH
Q 030113 1 MGALVSKFWFMLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (183)
|+..++..++.+.. .++.+++++|-.|+||||++.++.-++...+.|+++++...+.++..++++||.+|+...+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 55556665555554 49999999999999999999999989999999999999999999999999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.|+.+.|++|||+|.+|.+........+..+++....++..++++.||.|........|+...++....+...+.++++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999988888899998888888899999999999988778888888888877777889999999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
|.+|+|+++..+|+.+.+..+
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999998765
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=172.62 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=122.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++||+++|++|+|||||++++.++.+.. +.++.+..+ ..+.. ....+.+|||||++++..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 4789999999999999999999888754 445555333 22333 3478899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++.....|...+.......+.|+++++||.|+.+... ..+... +.. .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~---~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQ---QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHH---HcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999988888776544446799999999999864322 122111 111 1123679999999999999999
Q ss_pred HHHHHhhh
Q 030113 171 EWISQRVT 178 (183)
Q Consensus 171 ~~i~~~~~ 178 (183)
+++++++.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99998764
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=176.41 Aligned_cols=160 Identities=24% Similarity=0.342 Sum_probs=125.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+|+|++|+|||||++++.+..+.. +.++.+..+. .+.. ..+.+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 456999999999999999999999887654 4566665543 2333 3467899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||+++++++..+..|+..+.... ..+.|+++|+||.|+.... ...+..+.. +..+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999988887765443 2579999999999986532 222222222 2234679999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++++.+.++
T Consensus 158 e~f~~l~~~~~~~ 170 (210)
T PLN03108 158 EAFIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888654
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=169.29 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccce-eEE--EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN-VEE--LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
+||+++|++|+|||||++++.++.++...++.... ... +.....++.+|||||+..+...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998876544332211 111 222567899999999998888888888999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCC-ceEEEEeecccCCCHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNH-DWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+++.++..+..+|...+.... .+.|+++|+||+|+.+........+.......... ..+++++||+++.|++++|+.+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 999999988655544443322 47999999999999764432111111100000011 1369999999999999999999
Q ss_pred HHhhhc
Q 030113 174 SQRVTG 179 (183)
Q Consensus 174 ~~~~~~ 179 (183)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd01893 160 QKAVLH 165 (166)
T ss_pred HHHhcC
Confidence 987765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=172.73 Aligned_cols=158 Identities=21% Similarity=0.272 Sum_probs=115.9
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
|+|+|++|+|||||++++.++.+.. +.++....+. .+.. ....+.+|||||++.+...+..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5799999999999999999988755 3344433322 2223 3467999999999999999999999999999999999
Q ss_pred CcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-H--------HHhhcCcCccCCCc-eEEEEeecccCC
Q 030113 96 DRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-E--------ITDALSLHSIKNHD-WHIQACSALTGD 164 (183)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~--------~~~~~~~~~~~~~~-~~~~~~S~~~~~ 164 (183)
++++|+.+.. |+..+... .++.|+++|+||+|+....... . +............+ .+++++||+++.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999875 55555443 2579999999999986532110 0 00000001111223 379999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030113 165 GLVDGLEWISQRVTG 179 (183)
Q Consensus 165 gi~~~~~~i~~~~~~ 179 (183)
|++++|+.+++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=166.18 Aligned_cols=180 Identities=40% Similarity=0.656 Sum_probs=159.8
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCC--------cccccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGE--------VVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
|=.++++++++.+.+..+.++|+|..++|||||+.+.-... ...-.+|+|.+..++......+.+||.+||+
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 45688999999999999999999999999999998773321 1234588999999999999999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc-CccCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL-HSIKNH 151 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~ 151 (183)
..+++|..|+..+|++|+++|+++++.|......+..+..+....+.|+++..||.|+.+.....++...++. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999999999988888889999999999999988888887777762 333457
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
..++.++||.+|+||++..+|++..+.++
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 88899999999999999999999999887
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=175.40 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=111.0
Q ss_pred ceEEEEEcCCCCCHHHHHH-HhccCCc------ccccCcccc-e-eE-----------EEEEcCeEEEEEEcCCChhhHh
Q 030113 17 DYKIIIVGLDNAGKTTTLY-KLHLGEV------VTTHPTVGS-N-VE-----------ELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~-~l~~~~~------~~~~~~~~~-~-~~-----------~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
.+||+++|+.|+|||||+. ++.++.+ ..+.||++. . +. .+....+.+.+|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 6655433 224466642 1 11 12224589999999999752
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----------------HHHH
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMT----------------PAEI 139 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----------------~~~~ 139 (183)
....+++++|++++|||++++.||..+.. |+..+.... .+.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 44568899999999999999999999975 666554332 4689999999999854200 0111
Q ss_pred HhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 140 TDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
....+...++..+++|++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222222333455689999999999999999999864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=171.97 Aligned_cols=159 Identities=21% Similarity=0.200 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++..+.+.. +.++....+ ..+..+ ...+.+|||||++.+...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999888754 344443222 223333 3568899999999998889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-H--------HhhcCcCccC-CCceEEEEeecccC
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-I--------TDALSLHSIK-NHDWHIQACSALTG 163 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~--------~~~~~~~~~~-~~~~~~~~~S~~~~ 163 (183)
++++.+|..+...|...+... ..+.|+++|+||+|+.+...... + ....+....+ ....++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998875444443332 46799999999999854321111 0 0000001111 12236999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=165.81 Aligned_cols=157 Identities=21% Similarity=0.310 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++....+.. ..++.+..+. .... ....+.+||+||+..+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999887654 3333332222 2222 34789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+.+++++|++++.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999998888887655567999999999998652 22222222111 1235799999999999999999
Q ss_pred HHHHhhhc
Q 030113 172 WISQRVTG 179 (183)
Q Consensus 172 ~i~~~~~~ 179 (183)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988754
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=170.52 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=122.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc-cCccc-ceeEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVG-SNVEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
||+++|++|+|||||++++.+..+... .++.. .....+.+.+ +.+.+||+||+..+...+..++.++|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999998877653 33332 3333444444 7889999999999988888999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+++.++..+..|+..+.......+.|+++|+||+|+.+.............. ....+.+++++||++|.|++++|++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV-ELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH-HhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999998888888776555679999999999986531111111111111 012235699999999999999999999
Q ss_pred Hhhhc
Q 030113 175 QRVTG 179 (183)
Q Consensus 175 ~~~~~ 179 (183)
+.+..
T Consensus 160 ~~~~~ 164 (198)
T cd04147 160 RQANL 164 (198)
T ss_pred HHhhc
Confidence 98764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=171.26 Aligned_cols=155 Identities=14% Similarity=0.214 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+|++++|++|+|||||++++.++.+.....+..... ..+..+ ...+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999998877765333222222 223333 4688999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH---------HHHHhhcCcCccCC-CceEEEEeeccc
Q 030113 94 STDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTP---------AEITDALSLHSIKN-HDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~S~~~ 162 (183)
++++.+|..+. .|+..+... ..+.|+++++||.|+...... ..+........... ...+++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999886 455555432 246999999999998643210 00011001111111 223799999999
Q ss_pred CCCHHHHHHHHH
Q 030113 163 GDGLVDGLEWIS 174 (183)
Q Consensus 163 ~~gi~~~~~~i~ 174 (183)
|.|++++|+.++
T Consensus 159 ~~~v~~lf~~~~ 170 (173)
T cd04130 159 QKNLKEVFDTAI 170 (173)
T ss_pred CCCHHHHHHHHH
Confidence 999999998875
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=174.61 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--cccCccc--ceeEEEEE--cCeEEEEEEcCCChhhHhhHHhhcc-CCCEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVG--SNVEELVY--KNIRFEAWDVGGQERLRTSWATYYR-GTHAVIV 90 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~~~~~~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~ii~ 90 (183)
+||+++|++|+|||||++++..+.+. .+.++.+ .....+.. ....+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877764 3444443 23333443 457899999999982 23344556 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++.+|.....|+..+.......+.|+++|+||+|+.+... ..+. ..+. ...+++++++||+++.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACA----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHH
Confidence 999999999999988888776654446799999999999865422 1111 1111 22345799999999999999
Q ss_pred HHHHHHHhhh
Q 030113 169 GLEWISQRVT 178 (183)
Q Consensus 169 ~~~~i~~~~~ 178 (183)
+|+++++.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999999886
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=165.25 Aligned_cols=154 Identities=23% Similarity=0.340 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+.. ...+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887754 22333322 222333 3457899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++.....|+..+..... .+.|+++++||+|+..... ..+..+... ..+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999999998888777765443 3799999999999864322 222222221 234569999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998875
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=168.54 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEE--cCeEEEEEEcCCChh-hHhhHHhhccCCCEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVY--KNIRFEAWDVGGQER-LRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~d 93 (183)
||+++|++|+|||||+++++.+.+.. +.++....+ ..+.. ..+.+.+||+||+.. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999998877643 334432222 22233 346789999999885 34456778899999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCC-CHHHH
Q 030113 94 STDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGD-GLVDG 169 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-gi~~~ 169 (183)
++++.+|..+..|+..+..... ..+.|+++|+||+|+.... ...+.... . ...+.+++++|++++. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-~----~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-A----SELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-H----HHcCCEEEEeCCCCCchhHHHH
Confidence 9999999998888776655432 3579999999999985432 22221111 1 1223579999999994 99999
Q ss_pred HHHHHHhhh
Q 030113 170 LEWISQRVT 178 (183)
Q Consensus 170 ~~~i~~~~~ 178 (183)
|+++++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=160.81 Aligned_cols=152 Identities=26% Similarity=0.453 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc-cCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++++|||||++++.+..+... .++.+........ ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998887664 5666665554333 3478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC--CCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK--DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++..+..|+..+.... ....|+++++||+|+. ......+..+... ....+++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999999999888887776653 2569999999999985 3333344433332 245679999999999999999
Q ss_pred HHHHH
Q 030113 171 EWISQ 175 (183)
Q Consensus 171 ~~i~~ 175 (183)
+++.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 99863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=163.87 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.||+++|++|||||||++++.++.+.. +.++.+..+ ..+.. ....+.+|||+|++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 589999999999999999999988765 445555433 23333 34678999999999998888888999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh---------cCcCcc-CCCceEEEEeeccc
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA---------LSLHSI-KNHDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~S~~~ 162 (183)
+++.++|..+.. |...+... ..+.|+++|+||.|+.+.....+.... .+.... .....++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999988865 44444332 247899999999998643221110000 000000 11234799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
|.|++++|+++++.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=162.44 Aligned_cols=158 Identities=23% Similarity=0.353 Sum_probs=120.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++..+.+.. ..++.+.. ...+...+ ..+.+||+||+..+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999998766543 44555433 23344444 67899999999999999899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.... .+....+. .....+++++|+++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence 999999999998888877665433 2346999999999998643321 22222222 11235799999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+|+++.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999999865
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=162.94 Aligned_cols=159 Identities=20% Similarity=0.276 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccc-eeEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGS-NVEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.||+++|++|+|||||++++.+..+.. ..++.+. ....+... ...+.+||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999887654 3344432 23334443 3567999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+++..+++.+..++..+.......+.|+++|+||+|+.... ...+..... ...+.+++++|++++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876655678999999999986432 222221111 11235799999999999999999
Q ss_pred HHHHhhhccC
Q 030113 172 WISQRVTGKA 181 (183)
Q Consensus 172 ~i~~~~~~~~ 181 (183)
++.+.+.+.+
T Consensus 157 ~l~~~~~~~~ 166 (180)
T cd04137 157 LLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHhc
Confidence 9999887653
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-31 Score=163.33 Aligned_cols=160 Identities=25% Similarity=0.388 Sum_probs=129.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEEc-----------CeEEEEEEcCCChhhHhhHHhhc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVYK-----------NIRFEAWDVGGQERLRTSWATYY 82 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~~-----------~~~~~~~D~~g~~~~~~~~~~~~ 82 (183)
-+|.+.+|++|+||||++.++..+.|.. -.+|+|+.+.. +.++ .+.+++|||+||++++++.-.++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 3678899999999999999999888754 55677766543 3331 37899999999999999999999
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+++-++++++|+++..||-++++|+..+..+..-.+..+++++||+|+.+... +.+..........+.|||++||-+
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~---Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV---VSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh---hhHHHHHHHHHHhCCCeeeecccc
Confidence 99999999999999999999999999998877777888999999999865432 222222222234567899999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030113 163 GDGLVDGLEWISQRVTG 179 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~ 179 (183)
|.|+++..+.+...+.+
T Consensus 166 g~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 166 GTNVEKAVELLLDLVMK 182 (219)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999988887776544
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=164.88 Aligned_cols=157 Identities=24% Similarity=0.304 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEE--EcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELV--YKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++.+..+.. +.++..... ..+. .....+++||+||++.+......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999888733 333332211 1122 235789999999999888888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH--------HHhhcCcCcc-CCCceEEEEeecccCC
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE--------ITDALSLHSI-KNHDWHIQACSALTGD 164 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~S~~~~~ 164 (183)
++++.++......|...+.... .+.|+++|+||+|+.+...... +......... .....+++++|+++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999998877665444433322 4799999999999865543211 0011111111 1223379999999999
Q ss_pred CHHHHHHHHHH
Q 030113 165 GLVDGLEWISQ 175 (183)
Q Consensus 165 gi~~~~~~i~~ 175 (183)
|++++++++++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-28 Score=164.96 Aligned_cols=163 Identities=24% Similarity=0.366 Sum_probs=129.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcc-cccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
......+||+++|++|||||||++++..+.+. .+.++.+..+..... +.+.+.+||++|++++...+..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34567799999999999999999887766654 466777776655433 4589999999999999888899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++++|||+++..++..+..|+..+.... .+.|+++++||+|+.+.....+..+.. ...+..++++|++++.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 9999999999999999988888776442 468999999999986432222222211 123457999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
++.|.++++.+..++
T Consensus 157 ~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 157 EKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999887764
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=161.62 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=119.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce-eEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN-VEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
||+++|++|+|||||++++.+..+.. ..++.+.. ...+... ...+++||+||+..+...+..+++++|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999998876544 33333322 2223333 47889999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
++++++.....++..+.........|+++|+||+|+.... ...+...... ..+.+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999888776544679999999999987532 2222222221 12257999999999999999999
Q ss_pred HHHhh
Q 030113 173 ISQRV 177 (183)
Q Consensus 173 i~~~~ 177 (183)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=155.53 Aligned_cols=163 Identities=21% Similarity=0.291 Sum_probs=126.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc--ceeEEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG--SNVEELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+|++++|..-+|||||+-+++.+.|.. ..+|.. +....++. ...++.+|||+||++|..+-+.|+++.++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 456999999999999999999999888753 223322 22223333 5678999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||++|..||..+.+|..++..-.. ..+-+++|+||+|+.++... ....+...+..-++.++++||+++.||.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~V---t~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQV---TRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhh---hHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999999876543 34788999999998654221 111122222334566999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
|+.+.+.+.+..
T Consensus 167 Fe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 167 FESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHh
Confidence 999998887643
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=157.75 Aligned_cols=163 Identities=23% Similarity=0.288 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.||+|+|++|+|||||++++..+.+.. ..++....+. .+... ...+.+||++|++.+......++..+|++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999998766644 3344433322 22232 4678999999998887777777899999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-------HHHhhcCcCccCCC-ceEEEEeecccCC
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-------EITDALSLHSIKNH-DWHIQACSALTGD 164 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~S~~~~~ 164 (183)
+++.++|..+.. |+..+.... ++.|+++|+||+|+.+..... .+.........+.. ..++++|||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999875 555554332 469999999999985321100 00000000111112 2479999999999
Q ss_pred CHHHHHHHHHHhhhccCC
Q 030113 165 GLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~~ 182 (183)
|++++|+++.+.+....+
T Consensus 160 ~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 160 GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHHHhcccC
Confidence 999999999987766544
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-30 Score=155.94 Aligned_cols=155 Identities=21% Similarity=0.309 Sum_probs=123.7
Q ss_pred EEcCCCCCHHHHHHHhccCCccc--ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 22 IVGLDNAGKTTTLYKLHLGEVVT--THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
++|++++|||+|+-++-.+.|.. ..+|+|+.+..... ..+++++|||+||+++++....|++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999998887776643 34677766654322 4589999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
+..||++.+.|+.++-++. ...+.+.+++||+|+..+.. +....+....+..++|+.++|+++|.|++..|-.|.+
T Consensus 82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~---v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERA---VKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhc---cccchHHHHHHHHCCCceeccccccccHhHHHHHHHH
Confidence 9999999999999986543 24578899999999965421 1122222223344668999999999999999999999
Q ss_pred hhhcc
Q 030113 176 RVTGK 180 (183)
Q Consensus 176 ~~~~~ 180 (183)
.+.+.
T Consensus 158 ~l~k~ 162 (192)
T KOG0083|consen 158 ELKKL 162 (192)
T ss_pred HHHHh
Confidence 88764
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=155.76 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChhhH---------hhHHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQERLR---------TSWATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~~ 85 (183)
.+|+++|++|+|||||++++.+..+.. ...+.......+..+..++.+|||||+.... .........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 378999999999999999999887632 1234445555555677899999999974210 1111112236
Q ss_pred CEEEEEEeCCCcccH--HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 86 HAVIVVIDSTDRARI--SIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 86 d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
|++++|+|+++..++ .....|+..+.... .+.|+++|+||+|+.+.....+..+ + ......+++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEE-E----EELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHH-h----hhhccCceEEEEeccc
Confidence 899999999987653 44455555554322 4699999999999865433222111 1 1234567999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=153.85 Aligned_cols=156 Identities=23% Similarity=0.185 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCe-EEEEEEcCCChh----h---HhhHHhhccCCCE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNI-RFEAWDVGGQER----L---RTSWATYYRGTHA 87 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~----~---~~~~~~~~~~~d~ 87 (183)
+|+++|++|+|||||++++.+..... ...+.......+...+. ++.+|||||... . ...+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 58999999999999999998765311 12233333444555555 999999999632 1 1222233456999
Q ss_pred EEEEEeCCCc-ccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDR-ARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|+|++++ +++..+..|...+..... ..+.|+++|+||+|+.+.....+..+.... .....+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999998 788887777666654321 246899999999998654433332222211 11245699999999999
Q ss_pred HHHHHHHHHHhh
Q 030113 166 LVDGLEWISQRV 177 (183)
Q Consensus 166 i~~~~~~i~~~~ 177 (183)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=143.70 Aligned_cols=165 Identities=41% Similarity=0.717 Sum_probs=150.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcC-eEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN-IRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+.+.++|+++|-.++|||||+..+.+.+.....+|.|++...+.+.+ .++.+||.+|+...+..|..|+.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 47889999999999999999999999888889999999999999966 99999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|.+|...|+++...+.+++.......+|+.+..||-|+.......+....+........-+++-+||+..++|+..-.+|
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 99999999999999999998887788999999999998877777777777776666667889999999999999999999
Q ss_pred HHHhhh
Q 030113 173 ISQRVT 178 (183)
Q Consensus 173 i~~~~~ 178 (183)
+.+...
T Consensus 174 v~sn~~ 179 (185)
T KOG0074|consen 174 VQSNPE 179 (185)
T ss_pred hhcCCC
Confidence 987654
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=144.46 Aligned_cols=162 Identities=23% Similarity=0.356 Sum_probs=128.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce----eEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN----VEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..-+|..|+|+-|+|||+|++.+....|.. -..++|+. +..++...+++++|||+|+++++....+|++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 345889999999999999999998877654 33455543 3445556799999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
.|||++....+..+..|+....+. ..++..+++++||.|+..... +..+.+..+....+.-+.++|+++|.|+++.
T Consensus 89 mvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrd---v~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRD---VTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhccc---CcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 999999999999999999988654 457888999999999854322 2222223333455667999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|-...+++..+
T Consensus 165 fle~akkiyqn 175 (215)
T KOG0097|consen 165 FLETAKKIYQN 175 (215)
T ss_pred HHHHHHHHHHh
Confidence 98877776654
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=156.07 Aligned_cols=116 Identities=25% Similarity=0.428 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE-------cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY-------KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
+||+++|+.++|||||++++.++.+.. +.+|++.... .+.+ ..+.+++|||+|++++...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988755 5567774432 2333 34689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCC------------------CCCCCeEEEEEeCCCCCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHE------------------DLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~vilv~nK~Dl~~~ 133 (183)
+|+|||++++.||+++..|+..+.... ...+.|+++|+||.|+.++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999988886531 1246899999999998654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=151.44 Aligned_cols=151 Identities=24% Similarity=0.186 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC---ccc---ccCcccceeEEEEEc-CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE---VVT---THPTVGSNVEELVYK-NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~---~~~---~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.|+++|++|+|||||++++.+.. +.. ...+.+..+..+... ...+.+|||||++++......++.++|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 58999999999999999998643 221 123444444445554 77999999999999887777888999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP----AEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+++... ......+.. +... ...|+++++||+|+.+.... .++.+.+... .....+++++|+++++|++
T Consensus 82 ~d~~~~~~-~~~~~~~~~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLEI-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHHH-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCHH
Confidence 99987311 111111111 1111 12489999999998654211 1222222211 1135689999999999999
Q ss_pred HHHHHHHH
Q 030113 168 DGLEWISQ 175 (183)
Q Consensus 168 ~~~~~i~~ 175 (183)
++++++.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=156.23 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=131.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.+||+++|.+|+|||+|..++.+..|.. +.+|++..+. .+.. ....+.++||+|++++......++...|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 56899999999999999999999999876 5677764433 3333 457889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++..||+.+..++..+.........|+++|+||.|+.... .+....+........++|+++||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R---~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER---QVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc---ccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 9999999999999999999666666678999999999997631 1122222222344566799999999999999999
Q ss_pred HHHHhhhc
Q 030113 172 WISQRVTG 179 (183)
Q Consensus 172 ~i~~~~~~ 179 (183)
.++..+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99998765
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=153.60 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=106.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC-------cc-cccC------ccccee----EEE-----EEcCeEEEEEEcCCChhhH
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE-------VV-TTHP------TVGSNV----EEL-----VYKNIRFEAWDVGGQERLR 75 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~-------~~-~~~~------~~~~~~----~~~-----~~~~~~~~~~D~~g~~~~~ 75 (183)
+|+++|++++|||||++++++.. +. .+.+ +.+... ... ......+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 11 0111 112221 112 2246788999999999999
Q ss_pred hhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEE
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
..+..+++.+|++++|+|++++.++.....+.... . .++|+++|+||+|+.+.. ..+..+.+.... ......+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~-~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD-PERVKQQIEDVL-GLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC-HHHHHHHHHHHh-CCCcccE
Confidence 99999999999999999999876655554443322 1 358999999999986432 222222221111 1122358
Q ss_pred EEeecccCCCHHHHHHHHHHhhh
Q 030113 156 QACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+++||++|.|++++++++.+.+.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhCC
Confidence 99999999999999999998763
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=163.79 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=112.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhh--------HhhHHhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERL--------RTSWATY 81 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~ 81 (183)
+.+..+|+++|++|+|||||+|++.+..+...+ +|.......+..++.++.+|||||.... .......
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 356789999999999999999999988765333 3333344556677889999999997431 1112234
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+.++|++++|+|.++. +.....++...+.. .+.|.++|+||+|+.+. ...+..+.+.. ......++++||+
T Consensus 129 l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAk 199 (339)
T PRK15494 129 LHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISAL 199 (339)
T ss_pred hhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEecc
Confidence 7899999999998653 44444444433332 24677899999998643 23333333321 1223579999999
Q ss_pred cCCCHHHHHHHHHHhhhccCC
Q 030113 162 TGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~~ 182 (183)
+|.|++++++++.+.+.+.++
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCC
Confidence 999999999999999988765
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=154.34 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=108.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcC-eEEEEEEcCCChh---------hHhhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKN-IRFEAWDVGGQER---------LRTSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~---------~~~~~~~~ 81 (183)
...++|+|+|++|||||||++++.+..... ..++.......+...+ ..+.+|||||... +... ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST-LEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH-HHH
Confidence 456899999999999999999999876422 2344444444555544 3899999999732 2222 223
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+..+|++++|+|++++.++.....+...+ ......+.|+++|+||+|+.+..... .. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 67899999999999988776655444433 22233468999999999986543221 11 12234579999999
Q ss_pred cCCCHHHHHHHHHHhh
Q 030113 162 TGDGLVDGLEWISQRV 177 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~ 177 (183)
++.|+++++++|.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=158.80 Aligned_cols=155 Identities=21% Similarity=0.165 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccc---ee-EEEEEcCeEEEEEEcCCChhh--------HhhHHhhccCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS---NV-EELVYKNIRFEAWDVGGQERL--------RTSWATYYRGTH 86 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~d 86 (183)
+|+++|.+|+|||||+|++.+......++..++ .. ........++.+|||||.... ......++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 689999999999999999999876443322222 22 222335678999999996432 122345678999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+.. .....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI---LEDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh---hcCCCceEEEecCCCCCH
Confidence 999999999876654 222222222 36899999999998643221111111111 111226999999999999
Q ss_pred HHHHHHHHHhhhccCC
Q 030113 167 VDGLEWISQRVTGKAP 182 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~~ 182 (183)
+++++++.+.+.+.++
T Consensus 153 ~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 153 SFLAAFIEVHLPEGPF 168 (270)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 9999999999987765
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=147.15 Aligned_cols=154 Identities=24% Similarity=0.196 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEEc---CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVYK---NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.|+++|++|+|||||++++....+... ..+.......+... +..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998776543 22333333334443 678999999999998888888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcC---cCc--cCCCceEEEEeecccCCCHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALS---LHS--IKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~S~~~~~gi~ 167 (183)
|+++....... ..+..+.. .++|+++|+||+|+.... ...+...+. ... .....++++++|++++.|++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 99875322111 11111111 458999999999986432 222222221 110 11235689999999999999
Q ss_pred HHHHHHHHhhh
Q 030113 168 DGLEWISQRVT 178 (183)
Q Consensus 168 ~~~~~i~~~~~ 178 (183)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988754
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=161.65 Aligned_cols=161 Identities=19% Similarity=0.142 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEE-cCeEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVY-KNIRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
..|+++|.||+|||||++++.+.... ...+|...+...+.+ +..++.+||+||..+ +...+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 67899999999999999999875421 123455555666666 457899999999532 3345556678899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCCHH-HHHhhcCcCccCCCceEEEEeecccCC
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMTPA-EITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++++|+|+++.++++.+..|...+..+.. ..++|+++|+||+|+.+..... +..+... ...+.+++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCC
Confidence 99999999988788888777777655422 2468999999999986543221 1111111 1223579999999999
Q ss_pred CHHHHHHHHHHhhhccCC
Q 030113 165 GLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~~ 182 (183)
|++++++++.+.+.+.++
T Consensus 315 GI~eL~~~L~~~l~~~~~ 332 (335)
T PRK12299 315 GLDELLRALWELLEEARR 332 (335)
T ss_pred CHHHHHHHHHHHHHhhhc
Confidence 999999999998876543
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=148.50 Aligned_cols=155 Identities=23% Similarity=0.201 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccccc-------------------CcccceeEEEEEcCeEEEEEEcCCChhhHhhHH
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-------------------PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (183)
+|+|+|.+|+|||||++++.+....... .+.......+......+.+|||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887654322 222333444555678999999999999988899
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH----HHHhhcCcCcc-------
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA----EITDALSLHSI------- 148 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~----~~~~~~~~~~~------- 148 (183)
.+++.+|++++|+|++++.+... ...+..... .+.|+++++||+|+..+.... .+.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 99999999999999987654322 222222222 468999999999997643322 22233322111
Q ss_pred --CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 149 --KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 149 --~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.....+++++|++++.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 124678999999999999999999999875
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-26 Score=154.20 Aligned_cols=163 Identities=24% Similarity=0.263 Sum_probs=103.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCC-----------ChhhHhhHHhhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGG-----------QERLRTSWATYYR 83 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~ 83 (183)
...++|+++|++|+|||||++++.+..+.. ....+++..........+.+||||| ++.+...+..++.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRV-GKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-CCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999876532 2222333222222222689999999 4666666656554
Q ss_pred ----CCCEEEEEEeCCCcccHH-H--------HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcC-c
Q 030113 84 ----GTHAVIVVIDSTDRARIS-I--------MKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLH-S 147 (183)
Q Consensus 84 ----~~d~ii~v~d~~~~~s~~-~--------~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~-~ 147 (183)
.++++++|+|.+....+. . ....+...+.. .++|+++|+||+|+.+.. ...++.+.++.. .
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP 162 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc
Confidence 457888999986532210 0 01111222221 468999999999986443 122233333221 0
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
......+++++||++| |+++++++|.+.+.+...
T Consensus 163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 163 WRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred ccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 0011236899999999 999999999998877654
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-26 Score=149.25 Aligned_cols=165 Identities=20% Similarity=0.255 Sum_probs=124.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee---EEEE-EcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV---EELV-YKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~---~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+|+.|+|+.++|||+|+..+..+.|+. +.||+--++ ..+. .+.+.+.+|||+||+++.++++..+.++|.++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 356899999999999999999999888877 445554332 2231 34588999999999999999988999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-HHHh--------hcCcCccC-CCceEEEEee
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-EITD--------ALSLHSIK-NHDWHIQACS 159 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~~~~--------~~~~~~~~-~~~~~~~~~S 159 (183)
+||++.++.||.++...|...+.+.. ++.|+++|++|.||.++.... ++.. ..+...++ .....|++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999998876666655544 789999999999998432111 1110 00001111 1236799999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
|++..|++++|+..+......
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcc
Confidence 999999999999888876553
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=143.55 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCCh-----hhHhhHHhhccCCCEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE-----RLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~ii~v~d 93 (183)
||+++|++|+|||||++++.+..+. ..++.+.. +.. .+|||||+. .+.... ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-----YND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-----EcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 7999999999999999999987653 23333322 222 689999973 233333 35789999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
++++.++... . +.... ..|+++|+||+|+.+.. ..++..+.... ....+++++||+++.|++++|++
T Consensus 72 ~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHHH
Confidence 9999876442 2 22221 24899999999986432 22222222211 11236999999999999999998
Q ss_pred HH
Q 030113 173 IS 174 (183)
Q Consensus 173 i~ 174 (183)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 75
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=164.19 Aligned_cols=159 Identities=16% Similarity=0.102 Sum_probs=110.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCCh----------hhHhh-HHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQE----------RLRTS-WAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~-~~~ 80 (183)
..++|+++|.+|+|||||++++++....... .|.......+.+++..+.+|||||.. .+... ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4589999999999999999999988753322 22223334456678889999999952 22222 134
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++.+|++++|+|++++.++.... ++..+.. .++|+++|+||+|+.+........+............+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999987776653 3333322 46899999999999753322222222222222223467999999
Q ss_pred ccCCCHHHHHHHHHHhhhc
Q 030113 161 LTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~ 179 (183)
++|.|++++|+.+.+.+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-25 Score=142.55 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=112.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|+|||||++++.+..+.. ..++.+..... +..++ ..+.+||+||+..+...+..++++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999887533 33444444433 45556 7899999999999999888889999999999
Q ss_pred EeCCCc-ccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDR-ARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|.... .++.... .+...+..... .+.|+++++||.|+............+.. ....+++++||+++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 999876 5555544 44444433332 27899999999999654323333333322 23446999999999999999
Q ss_pred HHHHH
Q 030113 170 LEWIS 174 (183)
Q Consensus 170 ~~~i~ 174 (183)
+++|-
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99863
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-25 Score=148.22 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC----Ccc------cccCcccceeEEEEEc--------------CeEEEEEEcCCChh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG----EVV------TTHPTVGSNVEELVYK--------------NIRFEAWDVGGQER 73 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~----~~~------~~~~~~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 73 (183)
++|+++|++++|||||++++++. .+. ....|.+.....+.+. ...+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 111 1123444444333333 67999999999987
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH----HHhhcCcCc--
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE----ITDALSLHS-- 147 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~----~~~~~~~~~-- 147 (183)
+..........+|++++|+|+++.........+.. ... .+.|+++++||+|+........ +.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 66655566678899999999987543332222211 111 2479999999999864332222 222111111
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
....+++++++||++++|++++++++.+++..
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11245689999999999999999999998763
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=141.05 Aligned_cols=143 Identities=22% Similarity=0.152 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhHh--------hHHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLRT--------SWATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 85 (183)
++|+++|++|+|||||++++.+....... .+.......+...+.++.+|||||...... .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 58999999999999999999987643222 222233344556778999999999654322 233456789
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776655443322 256899999999998754332 1123456799999999999
Q ss_pred HHHHHHHHHHhh
Q 030113 166 LVDGLEWISQRV 177 (183)
Q Consensus 166 i~~~~~~i~~~~ 177 (183)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=156.71 Aligned_cols=151 Identities=25% Similarity=0.217 Sum_probs=108.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEE-cCeEEEEEEcCCC---------hhhHhhHHhhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVY-KNIRFEAWDVGGQ---------ERLRTSWATYY 82 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~~ 82 (183)
..++|+++|.+|+|||||+|++.+.... ...+|.+.....+.. ++..+.+|||+|. +.+... ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 4599999999999999999999987642 234566666666777 5689999999997 223222 2347
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
.++|++++|+|++++.+......+. ..+......+.|+++|+||+|+.+.. ++..... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEEEccC
Confidence 8899999999999987766554332 22222223468999999999986432 2221111 113589999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
|.|+++++++|.+.+
T Consensus 337 g~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 337 GEGLDLLLEAIAERL 351 (351)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999987653
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=146.82 Aligned_cols=152 Identities=22% Similarity=0.189 Sum_probs=106.5
Q ss_pred EEcCCCCCHHHHHHHhccCCc--cc-ccCcccceeEEEEEc-CeEEEEEEcCCChhh-------HhhHHhhccCCCEEEE
Q 030113 22 IVGLDNAGKTTTLYKLHLGEV--VT-THPTVGSNVEELVYK-NIRFEAWDVGGQERL-------RTSWATYYRGTHAVIV 90 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ii~ 90 (183)
++|++|+|||||++++.+... .. ..+|.......+..+ +..+.+|||||.... ...+...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 11 223444555556667 889999999996321 1123445788999999
Q ss_pred EEeCCCc------ccHHHHHHHHHHHhCCCC------CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEe
Q 030113 91 VIDSTDR------ARISIMKDELFRLLGHED------LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
|+|+++. .++.....+...+..... ..+.|+++|+||+|+.......+.. ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 466666666666554322 1469999999999986543322221 111112334569999
Q ss_pred ecccCCCHHHHHHHHHHh
Q 030113 159 SALTGDGLVDGLEWISQR 176 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~ 176 (183)
|++++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998765
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=147.00 Aligned_cols=157 Identities=24% Similarity=0.355 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCC-CEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGT-HAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~ii~v~d 93 (183)
+|+++|++++|||||++++....+..+.++...+...+.. ....+.+||+||+.++...+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998876655554444444333 367899999999999999999999998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc-------------------------
Q 030113 94 STDR-ARISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAMTPAEITDALSL------------------------- 145 (183)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~------------------------- 145 (183)
+++. .++.....++..++... ...+.|+++++||.|+........+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 66777777776654322 1257999999999998654332111111100
Q ss_pred ----------CccCCCceEEEEeecccCC-CHHHHHHHHHH
Q 030113 146 ----------HSIKNHDWHIQACSALTGD-GLVDGLEWISQ 175 (183)
Q Consensus 146 ----------~~~~~~~~~~~~~S~~~~~-gi~~~~~~i~~ 175 (183)
.......+.+.++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0000146678999998876 69999999865
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=141.64 Aligned_cols=151 Identities=28% Similarity=0.411 Sum_probs=113.8
Q ss_pred EEcCCCCCHHHHHHHhccCCc-cc-ccCcccceeEEEEEc----CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 22 IVGLDNAGKTTTLYKLHLGEV-VT-THPTVGSNVEELVYK----NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~-~~-~~~~~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
++|++|+|||||++++.+... .. ..++. ......... ...+.+||+||+......+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 33 23333 444444443 688999999999988888888899999999999999
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
++.++.....++..........+.|+++++||.|+.......... ...........+++++|+.++.|++++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 998888887774444444455789999999999987654433321 011111234568999999999999999999863
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=162.01 Aligned_cols=152 Identities=24% Similarity=0.256 Sum_probs=107.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccc----eeEEEEEcCeEEEEEEcCCChh--------hHhhHHhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS----NVEELVYKNIRFEAWDVGGQER--------LRTSWATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 83 (183)
...+|+|+|.+|+|||||++++.+........+.++ ......+.+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 347999999999999999999998765443334443 3344555778899999999652 4445667789
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
.+|++++|+|+++..++.. ..+...+.. .++|+++|+||+|+..... +..+.... ..+ ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL----GLG-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc----CCC-CeEEEEcCCC
Confidence 9999999999998765432 222222222 4689999999999864321 11111111 111 2479999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030113 164 DGLVDGLEWISQRVTG 179 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~ 179 (183)
.|++++++++++.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999998865
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=145.41 Aligned_cols=147 Identities=19% Similarity=0.198 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc--CCccccc-----------------CcccceeEEEEEcCeEEEEEEcCCChhhHhhH
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL--GEVVTTH-----------------PTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (183)
.+|+++|++++|||||++++.+ +.+.... .+.......+..+...+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999986 3332211 11222334456678999999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhcCcC--ccCCCce
Q 030113 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA---EITDALSLH--SIKNHDW 153 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~---~~~~~~~~~--~~~~~~~ 153 (183)
..+++.+|++++|+|+++.. +.....++..... .++|+++|+||+|+....... ++.+.+... .....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998742 2223333333322 358999999999986533221 222222110 1122366
Q ss_pred EEEEeecccCCCHHHH
Q 030113 154 HIQACSALTGDGLVDG 169 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~ 169 (183)
+++++||++|.|+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 158 PVLYASAKNGWASLNL 173 (194)
T ss_pred CEEEeehhcccccccc
Confidence 8999999999776443
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=154.81 Aligned_cols=156 Identities=23% Similarity=0.211 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--c-ccCcccceeEEEEEcC-eEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--T-THPTVGSNVEELVYKN-IRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
..|+++|.+|+|||||++++.+.... . ..+|...+...+.+.+ ..+.+||+||... +...+..+++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 67999999999999999999876421 1 2344555555566655 8999999999632 3334455567899
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHhCCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDSTDR---ARISIMKDELFRLLGHE-DLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
++++|+|+++. .+++.+..|...+..+. ...++|+++|+||+|+.+.....+..+.+.. ..+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999976 56666666655554332 1246899999999998654333333333321 1235799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
++|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=152.84 Aligned_cols=122 Identities=21% Similarity=0.379 Sum_probs=101.1
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEE---------------cCeEEEEEEcCCChh
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVY---------------KNIRFEAWDVGGQER 73 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~---------------~~~~~~~~D~~g~~~ 73 (183)
..+...+||+++|+.|||||||++++.++.+.. +.+|++..+ ..+.+ ..+.+++|||+|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 345577999999999999999999999887754 557777654 33333 236799999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCC-----------CCCCeEEEEEeCCCCCCC
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED-----------LQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~vilv~nK~Dl~~~ 133 (183)
+..++..++++++++|+|||+++..++..+..|+..+..... ..++|++||+||+|+...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999988875421 125899999999999653
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=160.84 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=109.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChhhHhh--------HHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQERLRTS--------WATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (183)
+..++|+++|++|+|||||+|++.+..... ...|.......+..++..+.+|||||....... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 355899999999999999999999876422 223444445556678889999999997653321 23467
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+++|++++|+|++++.++..... +.. ..+.|+++|+||+|+.+..... .....+++++|+++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998877664432 222 2468999999999996532211 12234699999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030113 163 GDGLVDGLEWISQRVTG 179 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~ 179 (183)
|.|++++++++.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998754
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=141.94 Aligned_cols=141 Identities=23% Similarity=0.241 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChh------hHhhHHhhc--cCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQER------LRTSWATYY--RGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~~--~~~d 86 (183)
++|+++|.||+|||||+|++.+....- ...|.......+.+.+..+.++|+||.-+ .......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999987421 33455555566777899999999999322 123334443 6899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT----PAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
++++|+|+++.++ ......++.+ .++|++++.||+|+..... ...+.+.+ ++|++++||++
T Consensus 81 ~ii~VvDa~~l~r---~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLER---NLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHHH---HHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred EEEEECCCCCHHH---HHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence 9999999987533 2233333332 3699999999999754322 23333333 45899999999
Q ss_pred CCCHHHHHHHH
Q 030113 163 GDGLVDGLEWI 173 (183)
Q Consensus 163 ~~gi~~~~~~i 173 (183)
++|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=140.63 Aligned_cols=145 Identities=21% Similarity=0.154 Sum_probs=101.8
Q ss_pred EEcCCCCCHHHHHHHhccCCccc-c--cCcccceeEEEEEcCeEEEEEEcCCChhhHh------hHHhhcc--CCCEEEE
Q 030113 22 IVGLDNAGKTTTLYKLHLGEVVT-T--HPTVGSNVEELVYKNIRFEAWDVGGQERLRT------SWATYYR--GTHAVIV 90 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--~~d~ii~ 90 (183)
++|++|+|||||++++.+..... . ..+.......+.+.+..+.+|||||+..+.. .+..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999998875322 2 2344455556677778999999999876543 3455554 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+|++++.... .++..+.. .++|+++|+||+|+.+........+.+. ...+.+++++|+.++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 99998764432 23333322 3589999999999865432221111221 1224579999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=146.42 Aligned_cols=164 Identities=27% Similarity=0.377 Sum_probs=121.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEc----CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYK----NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|+.|+|||||++++.++.+.. +.++.+..+...... ..++.+|||+|++++...+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999998876 445555454443332 4679999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHH-----------HhhcCcCccC-CCceEEEEe
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEI-----------TDALSLHSIK-NHDWHIQAC 158 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~ 158 (183)
|+|.++..++.+....|...+......+.|+++|+||+|+......... .......... .....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999997776666665555544443356999999999999765321110 0000000000 112238999
Q ss_pred ecc--cCCCHHHHHHHHHHhhhc
Q 030113 159 SAL--TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 159 S~~--~~~gi~~~~~~i~~~~~~ 179 (183)
|++ .+.+++++|......+.+
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999998887754
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=158.88 Aligned_cols=158 Identities=25% Similarity=0.176 Sum_probs=110.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChhhHh-----------hHHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQERLRT-----------SWAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 80 (183)
..++|+++|.+|+|||||++++++.+.....+ +.......+..++..+.+|||||..+... ....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45899999999999999999999876433222 22233344555677999999999644321 1234
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK-DAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
+++.+|++++|+|++++.+..... .+..... .++|+++|+||+|+. +.....++...+.........++++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 678999999999999876654432 2222222 358999999999997 2222334444443333233557899999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
|++|.|++++|+++.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=145.17 Aligned_cols=159 Identities=17% Similarity=0.076 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEEEEE---------------------------------
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEELVY--------------------------------- 58 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~~~~--------------------------------- 58 (183)
++|+++|+.|+|||||+.++.+..... ...+....+....+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999996542110 11111111111111
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~ 138 (183)
....+.+|||||++++...+...+..+|++++|+|++++.........+...... ...|+++|+||+|+.+.....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1268999999999999888888889999999999998742111112222222111 1257999999999865322222
Q ss_pred HHhhcCcCc--cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 139 ITDALSLHS--IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 139 ~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
..+.+.... .....++++++||++|+|++++++++.+.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 222221111 01235679999999999999999999998876
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=144.10 Aligned_cols=158 Identities=23% Similarity=0.205 Sum_probs=113.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEE--EcCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELV--YKNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~--~~~~~~~~~D~~g~ 71 (183)
++.++|+++|+.++|||||+++|...... ....+.......+. .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35689999999999999999999743310 12245556667777 78899999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcC-----cC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALS-----LH 146 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~-----~~ 146 (183)
.++...+...+..+|++|+|+|+.++-.. .....+..... .+.|+++|+||+|+... ...+..+.+. ..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHT
T ss_pred cceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhcccc
Confidence 99999999999999999999999876332 22233333322 45889999999998722 1222222211 11
Q ss_pred ccCC-CceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 147 SIKN-HDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 147 ~~~~-~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.... ..++++++||++|.|++++++.+.+.++
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1111 3689999999999999999999998875
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=146.41 Aligned_cols=161 Identities=19% Similarity=0.155 Sum_probs=114.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee----EEEEEcCeEEEEEEcCCChh--------hHhhHHhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV----EELVYKNIRFEAWDVGGQER--------LRTSWATY 81 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 81 (183)
..+.-.|+|+|.||+|||||+|++++......++-..++. ..+..+..++.++||||-.+ +.......
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3466789999999999999999999998766554444332 33445789999999999322 23344556
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeec
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+.++|++++|+|++++.. ....+....+.. .+.|+++++||+|...+.. ...+.+.+.. ......++++||
T Consensus 83 l~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiSA 154 (298)
T COG1159 83 LKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPISA 154 (298)
T ss_pred hccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEeec
Confidence 789999999999987532 223333333322 3579999999999876654 2333333322 223337999999
Q ss_pred ccCCCHHHHHHHHHHhhhccCC
Q 030113 161 LTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++|.|++.+.+.+.+.+.+.++
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999988764
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=137.92 Aligned_cols=155 Identities=23% Similarity=0.196 Sum_probs=105.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhh----------H-hhHHhh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERL----------R-TSWATY 81 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~~~ 81 (183)
.++|+++|++|+|||||++++.+....... .+.......+..++..+.+|||||..+. . .....+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999887643211 2222223345556778999999996432 1 112345
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEee
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
+..+|++++|+|++++.+.... ..+..... .+.|+++++||+|+.+. .......+.+..........+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999988665433 22222221 35899999999998765 22333333333222222356899999
Q ss_pred cccCCCHHHHHHHHHHh
Q 030113 160 ALTGDGLVDGLEWISQR 176 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~ 176 (183)
+++++|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=138.54 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCCh----hhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE----RLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
+|+++|++|+|||||++++.+... ...++.++ .+... .+|||||.. ++.......++.+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 799999999999999999876542 11222222 22221 269999962 3333334457899999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
++..++ ...++..+ ..+.|+++++||+|+.+. ....+.+..... ....|++++||++++|++++++++.
T Consensus 75 ~~~~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESR--LPAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccc--cCHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence 988665 22344432 135789999999998543 333333332221 1125899999999999999999998
Q ss_pred Hhhhcc
Q 030113 175 QRVTGK 180 (183)
Q Consensus 175 ~~~~~~ 180 (183)
+.+.+.
T Consensus 144 ~~~~~~ 149 (158)
T PRK15467 144 SLTKQE 149 (158)
T ss_pred Hhchhh
Confidence 877543
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=150.36 Aligned_cols=160 Identities=21% Similarity=0.221 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccc---eeEE-EEEcCeEEEEEEcCCChhh--------HhhHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS---NVEE-LVYKNIRFEAWDVGGQERL--------RTSWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 82 (183)
.+.-.|+++|++|+|||||+|++++......++...+ .... ...++.++.++||||.... .......+
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 4566799999999999999999998876543332222 2222 2225579999999996432 22334567
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
.++|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... ....+..+.+.. .....+++++||+
T Consensus 83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~ 154 (292)
T PRK00089 83 KDVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISAL 154 (292)
T ss_pred hcCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCC
Confidence 889999999999873 22223333333332 35899999999999732 222222222221 1234579999999
Q ss_pred cCCCHHHHHHHHHHhhhccCC
Q 030113 162 TGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++.|++++++++.+.+.+.++
T Consensus 155 ~~~gv~~L~~~L~~~l~~~~~ 175 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPEGPP 175 (292)
T ss_pred CCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999876653
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=155.18 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=107.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChhhHhh--------HHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQERLRTS--------WATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (183)
+..++|+++|++|+|||||+|++++........ |.......+.+++..+.+|||||....... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 467999999999999999999999875432222 222333456667889999999998554322 24567
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+++|++++|+|++++.++... |+..... .++|+++|+||+|+.+. ...++. ...+.+++.+|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEEEec
Confidence 899999999999988776654 4444422 36899999999998643 111111 12234689999998
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030113 163 GDGLVDGLEWISQRVTG 179 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~ 179 (183)
.|++++++.+.+.+.+
T Consensus 346 -~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 -LKIKALVDLLTQKINA 361 (442)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 6899999888887754
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=137.61 Aligned_cols=145 Identities=21% Similarity=0.155 Sum_probs=100.2
Q ss_pred EEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChhhHh--------hHHhhccCCCEE
Q 030113 21 IIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQERLRT--------SWATYYRGTHAV 88 (183)
Q Consensus 21 ~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~i 88 (183)
+++|++|+|||||++++.+..... ...+...........+..+.+|||||...... .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 479999999999999999875322 12233344455666778999999999877433 445567889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
++|+|+.++.+... .++...+.. .+.|+++|+||+|+.+.... ...+.. ....+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~----~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS----LGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh----cCCCCeEEEecccCCCHHH
Confidence 99999987543322 222233222 35899999999998754322 111111 1112589999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+++++++++
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998764
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=141.12 Aligned_cols=131 Identities=24% Similarity=0.358 Sum_probs=102.8
Q ss_pred ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe
Q 030113 45 THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120 (183)
Q Consensus 45 ~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 120 (183)
+.+|++..+.. +.. ..+++.+|||+|++++...+..+++++|++|+|||++++.+|..+..|+..+..... ...|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCe
Confidence 56778766643 233 458899999999999999999999999999999999999999999989888876532 5689
Q ss_pred EEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 121 VLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 121 vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
+++|+||+|+.+. ....+..... ...+..++++||++|.|++++|+++++.+.+.+
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~~-----~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKA-----QEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999998542 2222222211 223456999999999999999999999987643
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-26 Score=145.15 Aligned_cols=159 Identities=20% Similarity=0.345 Sum_probs=129.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE----EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE----ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+|++|+|+.++||||++.++|.+-|.. +..++++... .+..++++..+||++|++.+......|++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 55999999999999999999999888765 5567776543 234467888999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||..+|..||+....|...+.... ..+|.++|-||+|+.++... ....+-++ +....+++.+|+++..|+..+
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la----k~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA----KKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH----HHhhhhhhhhhhhhhhhhHHH
Confidence 999999999999999999987654 56999999999998754321 11111111 233456999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|..+++.+..+
T Consensus 173 F~YLaeK~~q~ 183 (246)
T KOG4252|consen 173 FAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999877654
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=141.76 Aligned_cols=162 Identities=20% Similarity=0.171 Sum_probs=105.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCC-cccccCcccceeEEEE-EcCeEEEEEEcCCC----------hhhHhhHH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGE-VVTTHPTVGSNVEELV-YKNIRFEAWDVGGQ----------ERLRTSWA 79 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~~~~~ 79 (183)
......++|+++|++|+|||||++++++.. .....++.+.+...-. ..+.++.+|||||. +.+.....
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 344567999999999999999999999876 3444445443322111 12478999999994 33444445
Q ss_pred hhccCC---CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEE
Q 030113 80 TYYRGT---HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 80 ~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
.+++.+ +++++|+|.+++.+... .++...+.. .+.|+++++||+|+.+....+...+.+.... .....+++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KFGDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-HhcCCceE
Confidence 555544 67888999876543322 222222222 3588999999999865433333222222111 11145799
Q ss_pred EeecccCCCHHHHHHHHHHhhhc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++|++++.|++++++.+.+.+.+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999887754
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=152.28 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcCe-EEEEEEcCCChhh--Hhh------HHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKNI-RFEAWDVGGQERL--RTS------WATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~~--~~~------~~~~~~~~ 85 (183)
++|+++|.+|+|||||+|++.+.... ....|.......+...+. .+.+|||+|..+. ... +...++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987642 223455555555666553 8899999997331 112 23346889
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceE-EEEeecccCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWH-IQACSALTGD 164 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 164 (183)
|++++|+|++++.++.....+.. .+......+.|+++|+||+|+.+... ...... . .+.+ ++.+||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 99999999999877666533222 22222224689999999999864321 111111 0 1112 5889999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030113 165 GLVDGLEWISQRVTG 179 (183)
Q Consensus 165 gi~~~~~~i~~~~~~ 179 (183)
|++++++++.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999998854
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=150.92 Aligned_cols=157 Identities=22% Similarity=0.190 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEc-CeEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYK-NIRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
..|+++|.||+|||||++++++.... ...+|...+...+.+. ...+.+||+||... +...+..+++.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 38999999999999999999876521 1233445555556665 68899999999532 2233445567799
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDSTDR---ARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
++++|+|+++. .++.....+...+..+.. ..++|+++|+||+|+... ...+.+..... ..+++++||++
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l-----~~~i~~iSA~t 311 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKL-----GPKVFPISALT 311 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHh-----CCcEEEEeCCC
Confidence 99999999864 456666555555543321 246899999999998432 12222211111 14699999999
Q ss_pred CCCHHHHHHHHHHhhhccC
Q 030113 163 GDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~~ 181 (183)
++|++++++++.+.+.+.+
T Consensus 312 geGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 312 GQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 9999999999998886654
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=159.24 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=109.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc---CcccceeEEEEEcCe-EEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH---PTVGSNVEELVYKNI-RFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+..+|+++|++++|||||++++.+..+.... .|.......+.+.+. .+.+|||||++.+...+...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 46689999999999999999999887654421 233333344555444 89999999999999999988999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc----CCCceEEEEeecccCCCH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI----KNHDWHIQACSALTGDGL 166 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~gi 166 (183)
|+|++++..-. ....+... ...++|+++++||+|+... ...++.+.+..... .....+++++||++|+|+
T Consensus 165 VVda~dgv~~q-T~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQ-TIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHh-HHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 99998753211 11222222 1246899999999998643 33333333321110 012357999999999999
Q ss_pred HHHHHHHHH
Q 030113 167 VDGLEWISQ 175 (183)
Q Consensus 167 ~~~~~~i~~ 175 (183)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999865
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=153.39 Aligned_cols=159 Identities=22% Similarity=0.235 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
...|+++|.||+|||||+++|.+..... ..+|...+...+...+..+.+||+||... .......+++.+|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 3789999999999999999998764321 23455566666777888999999999421 2223344578899
Q ss_pred EEEEEEeCCCc----ccHHHHH---HHHHHHhCC-------CCCCCCeEEEEEeCCCCCCCCCHH-HHHhhcCcCccCCC
Q 030113 87 AVIVVIDSTDR----ARISIMK---DELFRLLGH-------EDLQHSVVLIFANKQDLKDAMTPA-EITDALSLHSIKNH 151 (183)
Q Consensus 87 ~ii~v~d~~~~----~s~~~~~---~~~~~~~~~-------~~~~~~~vilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~ 151 (183)
++++|+|+++. +.+..+. ..+..+... ....++|+++|+||+|+.+..... .+...+. ..
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~-----~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE-----AR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-----Hc
Confidence 99999999853 2333333 333333211 022468999999999986432211 1122221 22
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++++++||++++|++++++++.+.+...
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 46799999999999999999999887653
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=151.89 Aligned_cols=159 Identities=25% Similarity=0.206 Sum_probs=110.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccce----eEEEEEcCeEEEEEEcCCChhh----------H-hhHH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN----VEELVYKNIRFEAWDVGGQERL----------R-TSWA 79 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~ 79 (183)
...++|+++|++|+|||||++++++.......+..+++ ...+...+..+.+|||||..+. . ....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35699999999999999999999987643333333322 2334457788999999995321 1 1123
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+++.+|++++|+|++++.+..... .+..+.. .++|+++|+||+|+.+.....++.+.+.........++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 4678899999999999876554432 2222222 3589999999999874433344444443333233567899999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
|+++.|++++++.+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999877543
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=133.70 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=102.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccc----eeEEEEEcCeEEEEEEcCCChhhH--------hhHHhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS----NVEELVYKNIRFEAWDVGGQERLR--------TSWATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 83 (183)
...+|+++|++|+|||||++++.+............ ...........+.+|||||..... ......+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998765332221111 112233355789999999964322 23345578
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC-CCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD-AMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
.+|++++|+|++++. .....++...+.. .+.|+++|+||+|+.. .....+....+.. .....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEecc
Confidence 899999999999872 1222223232222 2588999999999873 2222333333222 22345799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
+.|+++++++|.+.+
T Consensus 154 ~~~~~~l~~~l~~~~ 168 (168)
T cd04163 154 GENVDELLEEIVKYL 168 (168)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998754
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-23 Score=138.14 Aligned_cols=148 Identities=22% Similarity=0.240 Sum_probs=95.1
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCC-cccccCcccceeE--EEEEcCeEEEEEEcCCCh----------hhHhh
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGE-VVTTHPTVGSNVE--ELVYKNIRFEAWDVGGQE----------RLRTS 77 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~~----------~~~~~ 77 (183)
...+.+.++|+|+|++|+|||||++++.+.. ...+.++.+.+.. .+..+ ..+.+|||||.. .+...
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 3445788999999999999999999999876 3334444443322 12222 379999999942 23333
Q ss_pred HHhhcc---CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhcCcCccCC
Q 030113 78 WATYYR---GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP----AEITDALSLHSIKN 150 (183)
Q Consensus 78 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~ 150 (183)
...+++ .++++++|+|++++-+.... .+...+.. .+.|+++++||+|+.+.... .++.+.+... .
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~ 162 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---A 162 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---c
Confidence 444554 35899999999875443333 22222222 36899999999998654322 2222222221 2
Q ss_pred CceEEEEeecccCCCHH
Q 030113 151 HDWHIQACSALTGDGLV 167 (183)
Q Consensus 151 ~~~~~~~~S~~~~~gi~ 167 (183)
..++++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 23579999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=154.80 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=109.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC-------ccc-cc------Cccccee----EEEEEc-----CeEEEEEEcCCChh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE-------VVT-TH------PTVGSNV----EELVYK-----NIRFEAWDVGGQER 73 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~-------~~~-~~------~~~~~~~----~~~~~~-----~~~~~~~D~~g~~~ 73 (183)
-.+++++|+.++|||||+++++... +.. +. ...|+++ ..+.+. ...+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999997642 111 11 1123322 223332 37899999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCce
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (183)
+...+..+++.+|++++|+|++++.+......|+... . .+.|+++|+||+|+.... ..+..+.+... ......
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDAS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCcc
Confidence 9999999999999999999999876666555544333 2 357999999999986432 22222222111 111123
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.++++||++|.|++++++++.+.+..
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999998764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-23 Score=159.93 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=111.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+...|+|+|+.++|||||+++|.+..+... ..|.......+.+.+..+.+|||||++.|...+...+..+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 35778999999999999999999977655321 122333334566677899999999999999999988999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc----CCCceEEEEeecccCCCH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI----KNHDWHIQACSALTGDGL 166 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~gi 166 (183)
|+|+++...-. ....+... ...++|+++++||+|+... ....+...+..... ....++++++||++|.|+
T Consensus 367 VVdAddGv~~q-T~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQ-TIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHh-HHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 99998753211 11222222 2246899999999999643 22333332221110 113478999999999999
Q ss_pred HHHHHHHHHh
Q 030113 167 VDGLEWISQR 176 (183)
Q Consensus 167 ~~~~~~i~~~ 176 (183)
+++++++...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=151.07 Aligned_cols=147 Identities=22% Similarity=0.189 Sum_probs=106.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCC--------hhhHhhHHhhccCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQ--------ERLRTSWATYYRGTH 86 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~d 86 (183)
+|+++|.+|+|||||+|++.+........ |.........+.+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 48999999999999999999876433222 333445566778889999999995 445566777889999
Q ss_pred EEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 87 AVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++++|+|+.++.+.. .+..++.. .++|+++|+||+|+....... .+... ....+++++||++|.
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~~~~~~~~--~~~~~-----lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDGKKEDAVA--AEFYS-----LGFGEPIPISAEHGR 146 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccCCcccccH--HHHHh-----cCCCCeEEEeCCcCC
Confidence 999999998754332 22233322 358999999999986543211 11111 112258999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030113 165 GLVDGLEWISQRVTG 179 (183)
Q Consensus 165 gi~~~~~~i~~~~~~ 179 (183)
|++++++++.+.+.+
T Consensus 147 gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 147 GIGDLLDAILELLPE 161 (429)
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999988754
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=133.17 Aligned_cols=151 Identities=23% Similarity=0.138 Sum_probs=105.7
Q ss_pred EEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEc-CeEEEEEEcCCChhhH-------hhHHhhccCCCEEE
Q 030113 22 IVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYK-NIRFEAWDVGGQERLR-------TSWATYYRGTHAVI 89 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii 89 (183)
++|++|+|||||++++.+....... .+........... ...+.+||+||..... .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999887554222 2222333333333 6799999999965543 34455778999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+|+++..+..... +..... ..+.|+++|+||+|+.......................+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887665554 222222 246899999999998766544443221222333446778999999999999999
Q ss_pred HHHHHHhh
Q 030113 170 LEWISQRV 177 (183)
Q Consensus 170 ~~~i~~~~ 177 (183)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=158.02 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=106.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE----EEEEcCeEEEEEEcCCChh--------hHhhHHhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE----ELVYKNIRFEAWDVGGQER--------LRTSWATY 81 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 81 (183)
+....+|+++|.+|+|||||+|++++........+.|++.. ...+.+..+.+|||||... +......+
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34457899999999999999999998765444444444332 3344678999999999653 34455667
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
++.+|++++|+|+++.- ......+...+.. .++|+++|+||+|+.... ....+.... ..+ ..+++||+
T Consensus 352 ~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l----g~~-~~~~iSA~ 419 (712)
T PRK09518 352 VSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL----GLG-EPYPISAM 419 (712)
T ss_pred HHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc----CCC-CeEEEECC
Confidence 89999999999998642 2222233333322 469999999999985432 111121111 111 25789999
Q ss_pred cCCCHHHHHHHHHHhhhc
Q 030113 162 TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~ 179 (183)
+|.|++++++++++.+.+
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999999998865
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=131.07 Aligned_cols=109 Identities=25% Similarity=0.380 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc---cccCccc----ceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVG----SNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
||+|+|++|+|||||++++++..+. ...+..+ ............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 1122222 22222222344589999999998888877779999999999
Q ss_pred EeCCCcccHHHHHH---HHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 92 IDSTDRARISIMKD---ELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 92 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
||++++.++..+.. |+..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 99999999988754 44444332 24599999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=146.70 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcC-eEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKN-IRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
..|+++|.||+|||||+|+|.+.... ...+|.......+.... ..+.++||||... .......+++.+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 37999999999999999999876531 12244445555566654 4699999999532 2233345688999
Q ss_pred EEEEEEeCC---CcccHHHHHHHHHHHhCCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDST---DRARISIMKDELFRLLGHE-DLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
++++|+|++ +...+.....+...+.... ...+.|+++|+||+|+.......+..+.+... .....+++++||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCC
Confidence 999999998 3445565555555554321 12358999999999986442222222222111 01122589999999
Q ss_pred CCCHHHHHHHHHHhhhccCC
Q 030113 163 GDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~~~ 182 (183)
+.|++++++++.+.+.+.++
T Consensus 318 g~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcc
Confidence 99999999999999877543
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-23 Score=158.79 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC---ccc---ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE---VVT---THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.|+++|++++|||||++++.+.. ++. ...|....+..+..++..+.+||+||++++...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998643 221 12344444555666778999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCHHHHHhhcCcCc--cC-CCceEEEEeecccCCCHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTPAEITDALSLHS--IK-NHDWHIQACSALTGDGLV 167 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~S~~~~~gi~ 167 (183)
+|++++.. ......+.. +.. .++| +++|+||+|+.+........+...... .. ..+++++++|+++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl~i-l~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLAV-LDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHHH-HHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987421 111122221 111 2466 999999999975432222222211110 01 125789999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++++++.+.+...
T Consensus 156 eL~~~L~~l~~~~ 168 (581)
T TIGR00475 156 ELKKELKNLLESL 168 (581)
T ss_pred hHHHHHHHHHHhC
Confidence 9999988766543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=156.44 Aligned_cols=159 Identities=15% Similarity=0.074 Sum_probs=111.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChh----------hHhh-HHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQER----------LRTS-WAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~~ 80 (183)
..++|+++|.+|+|||||++++.+..... ...|.......+.+++..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 45899999999999999999999887422 22233333344566788899999999532 1111 134
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++.+|++++|+|++++.+..... .+..+.. .++|+++|+||+|+.+......+...+..........+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 478899999999999887766553 3333322 36899999999999754333333333322211224457899999
Q ss_pred ccCCCHHHHHHHHHHhhhc
Q 030113 161 LTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~ 179 (183)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887764
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=150.03 Aligned_cols=146 Identities=23% Similarity=0.200 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChh--------hHhhHHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQER--------LRTSWATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 85 (183)
++|+++|.+|+|||||++++.+....... .+.........+.+..+.+|||||... +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987643222 233344556677789999999999876 334456678899
Q ss_pred CEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 86 HAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
|++++|+|++++.+.. .+..++.. .+.|+++|+||+|+.+.. ....+.... ....++++||++|
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~~--~~~~~~~~l-----g~~~~~~iSa~~g 147 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDEE--ADAYEFYSL-----GLGEPYPISAEHG 147 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccch--hhHHHHHhc-----CCCCCEEEEeeCC
Confidence 9999999998754332 23333332 268999999999975421 122222111 1113789999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++++++.+..
T Consensus 148 ~gv~~l~~~I~~~~ 161 (435)
T PRK00093 148 RGIGDLLDAILEEL 161 (435)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998743
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=155.88 Aligned_cols=157 Identities=21% Similarity=0.235 Sum_probs=109.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCc--ccceeEEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPT--VGSNVEELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~--~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.+..+|+|+|++++|||||++++....+... ..| .+.....+.. ....+.+|||||++.|...+..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4668999999999999999999987665431 122 2222222222 35899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc----CCCceEEEEeecccC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI----KNHDWHIQACSALTG 163 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~ 163 (183)
+++|+|++++...... ..+..+ ...++|+++++||+|+... ...++.+.+..... ....++++++||++|
T Consensus 322 aILVVDA~dGv~~QT~-E~I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAINYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhH-HHHHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 9999999875322211 222222 1246899999999998653 22333333321100 112468999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++++++....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987653
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-23 Score=127.11 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=131.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.+.-.+||.++|++..|||||+-++.++++.+ ...+.|++... +.. ..+.+.+||.+|++++....+-..+++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 44567999999999999999999999998854 55777766543 333 45788999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++++|.+.++.+..+..|+........ ..+| ++|++|.|+.-... .++....-+...++..+++.|+||+..+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 9999999999999999999999876542 2344 57899999643222 222222222333344677899999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030113 166 LVDGLEWISQRVTGKAP 182 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (183)
+..+|..+...+.+.++
T Consensus 174 v~KIFK~vlAklFnL~~ 190 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNLPW 190 (205)
T ss_pred HHHHHHHHHHHHhCCce
Confidence 99999999988877664
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=144.25 Aligned_cols=149 Identities=21% Similarity=0.216 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChh---------hHhhHHhhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQER---------LRTSWATYYRG 84 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 84 (183)
..|+|+|.||||||||+|+|++....-... |....+....+.+..+.++||+|-+. ...+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 679999999999999999999988765444 44455667778888999999999442 23445666889
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
||++|+|+|...+-+ .....+...+.. .++|+++|+||+|-..... ...+.+.+ .-...+++||.+|.
T Consensus 84 ADvilfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~--~~~efysl-----G~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNLKAEE--LAYEFYSL-----GFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCchhhh--hHHHHHhc-----CCCCceEeehhhcc
Confidence 999999999976422 222223333221 4699999999999753221 11122211 11249999999999
Q ss_pred CHHHHHHHHHHhhh
Q 030113 165 GLVDGLEWISQRVT 178 (183)
Q Consensus 165 gi~~~~~~i~~~~~ 178 (183)
|+.++++++.+.++
T Consensus 152 Gi~dLld~v~~~l~ 165 (444)
T COG1160 152 GIGDLLDAVLELLP 165 (444)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999999973
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=144.61 Aligned_cols=157 Identities=25% Similarity=0.203 Sum_probs=115.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCccc----ceeEEEEEcCeEEEEEEcCCChhhH-----------hhHHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG----SNVEELVYKNIRFEAWDVGGQERLR-----------TSWAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~~ 80 (183)
..++|+|+|.||+|||||+|++++.+..-.++..| .-...+.+++.++.++||+|..+-. .....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 45999999999999999999999998765554444 4445567789999999999943321 12234
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEe
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
.+..+|.+++|+|++++-+ .....+..+. ...+.++++++||||+.+. ....+....+.........++++++
T Consensus 257 aI~~a~vvllviDa~~~~~--~qD~~ia~~i---~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGIS--EQDLRIAGLI---EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCch--HHHHHHHHHH---HHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 4678999999999998733 2322222322 2356899999999998765 4445555555555545577899999
Q ss_pred ecccCCCHHHHHHHHHHhh
Q 030113 159 SALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~ 177 (183)
||+++.|+.++++++.+..
T Consensus 332 SA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EecCCCChHHHHHHHHHHH
Confidence 9999999999999887643
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=149.82 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=102.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc----------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.++.++|+++|++++|||||+++|+...-. ....|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 467899999999999999999999732210 1223444555566677
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH---
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--- 136 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--- 136 (183)
+..+.+|||||++++...+...+..+|++++|+|+++...+.....+...+.... ...|+++++||+|+.+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999999887766677889999999999987312211112222222211 12479999999998652211
Q ss_pred ---HHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 137 ---AEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
.++.+.+.........++++++||++|+|+++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 122222222222223468999999999999873
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=149.19 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=109.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cc---------c-------ccCcccceeEEEEEc-----CeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VV---------T-------THPTVGSNVEELVYK-----NIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~---------~-------~~~~~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (183)
.+..+++|+|+.++|||||+.+++... .. . ...|.......+.+. ...+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 445689999999999999999997521 10 0 112222222333332 578999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNH 151 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (183)
.++...+..+++.+|++++|+|++++........|... .. .+.|+++|+||+|+..... .+..+.+... ....
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~-~~v~~ei~~~-lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADP-ERVKQEIEDV-IGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccH-HHHHHHHHHH-hCCC
Confidence 99999999999999999999999987554444333322 21 3588999999999864322 2222222111 1112
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
...++++||++|.|++++++++.+.+..
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 2358999999999999999999988764
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-22 Score=132.31 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCc----------c---------cccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEV----------V---------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
.++|+++|+.++|||||+++|++... . ....|.......+..++.++.++||||+.++...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57899999999999999999975310 0 1112333333444556788999999999999888
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhcCcCccCCC
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-A----EITDALSLHSIKNH 151 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~ 151 (183)
....+..+|++++|+|+..+-. ......+..+.. .++| +++++||+|+...... . ++.+.+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 8888999999999999986522 112222333222 2455 7899999998643221 1 22233222222234
Q ss_pred ceEEEEeecccCCCH
Q 030113 152 DWHIQACSALTGDGL 166 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi 166 (183)
+++++++||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 689999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=148.10 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=101.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC--Ccc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG--EVV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~--~~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|+.++|||||+.+|+.. ... ....|.......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 567899999999999999999999742 111 0122333444556667
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMT--P 136 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~ 136 (183)
...+.+|||||++++.......+..+|++++|+|+++++++.... .+...+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 889999999999998877777789999999999999875331111 1111111111 2357999999999964221 1
Q ss_pred ----HHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 137 ----AEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
.++.+.+.........++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222222222357899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=122.75 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCC----ChhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGG----QERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
||+++|+.|+|||||+++|.+.+. .+..|..+.+. + .++|||| ...+.........++|.+++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~-----~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY-----D---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec-----c---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 799999999999999999987654 22333222222 1 4489999 344455555556799999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK-DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+++.+. ....+... .++|+|-|+||+|+. ++.+.....+.+...... .+|++|+.+|+|++++.++|
T Consensus 74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 987432 22222222 348999999999998 344445555555444322 37999999999999999987
Q ss_pred H
Q 030113 174 S 174 (183)
Q Consensus 174 ~ 174 (183)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-21 Score=121.74 Aligned_cols=156 Identities=28% Similarity=0.396 Sum_probs=124.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc-------------cCcccceeEEEEEcC-eEEEEEEcCCChhhHhhHH
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-------------HPTVGSNVEELVYKN-IRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~ 79 (183)
.....||+|+|+.++||||++++++....... ..|+...+....+.. ..+.+++||||+++...|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 45778999999999999999999987663211 134445555555544 8999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+++.+.++|+++|.+.+..+ -...+..++.+.. ..|+++.+||.|+.+....+++.+.+.... ...+.++.+
T Consensus 87 ~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeee
Confidence 999999999999999999877 3344444444432 199999999999998888888887776442 466899999
Q ss_pred cccCCCHHHHHHHHHHh
Q 030113 160 ALTGDGLVDGLEWISQR 176 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~ 176 (183)
+.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999999988766
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=143.92 Aligned_cols=161 Identities=20% Similarity=0.112 Sum_probs=105.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc------cCcccceeEE--------------EEE------------cCeE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT------HPTVGSNVEE--------------LVY------------KNIR 62 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~------~~~~~~~~~~--------------~~~------------~~~~ 62 (183)
++.++|+++|+.++|||||+++|.+...... ..|....+.. ++. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 5789999999999999999999965422110 1111111100 001 1468
Q ss_pred EEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh
Q 030113 63 FEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA 142 (183)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~ 142 (183)
+.+||+||++++...+......+|++++|+|++++.........+..+ ... ...|+++++||+|+.+.....+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999998888889999999999999653112222233222 111 22578999999998754322111111
Q ss_pred cCcCc--cCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 143 LSLHS--IKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 143 ~~~~~--~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+.... .....++++++||++|+|+++++++|.+.+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 11110 0123578999999999999999999998765
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=131.21 Aligned_cols=149 Identities=23% Similarity=0.213 Sum_probs=102.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChhh-------HhhHHhhccCCCEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQERL-------RTSWATYYRGTHAV 88 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~i 88 (183)
+++++|++|+|||||++++.+..... ..+|.......+.+.+.++++||+||..+. ......+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 68999999999999999998865321 223444555566778899999999996432 23445678999999
Q ss_pred EEEEeCCCccc-HHHHHHHHHHH----------------------------------------hC---------------
Q 030113 89 IVVIDSTDRAR-ISIMKDELFRL----------------------------------------LG--------------- 112 (183)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~--------------- 112 (183)
++|+|++++.. ...+...+... +.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987642 22222222110 00
Q ss_pred ---------CCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 113 ---------HEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 113 ---------~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......+|+++|+||+|+.+. .+... +.. ..+++++||+++.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LAR------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 001123799999999998643 22221 111 12489999999999999999998865
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=142.19 Aligned_cols=162 Identities=20% Similarity=0.120 Sum_probs=104.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEE--------------EEEc------------C
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEE--------------LVYK------------N 60 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~--------------~~~~------------~ 60 (183)
..++.++|+++|+.++|||||+.+|.+..... ...|....+.. +... .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 45678999999999999999999996532111 11222211100 0000 2
Q ss_pred eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH--
Q 030113 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-- 138 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-- 138 (183)
..+.+|||||++++..........+|++++|+|++++.........+... ... ...|+++|+||+|+.+.....+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 57999999999998877777777889999999999653111111222221 111 1246899999999975433221
Q ss_pred --HHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 139 --ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+...+... .....+++++||+++.|+++++++|.+.+..
T Consensus 162 ~~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 162 EQIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 22211111 1235689999999999999999999987653
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=133.91 Aligned_cols=155 Identities=23% Similarity=0.187 Sum_probs=109.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc--------------c-------ccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV--------------T-------THPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
+|+++|+.|+|||||+++++...-. . ...+.......+.+++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999753110 0 112333445667778999999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH---HHHHh-------------
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP---AEITD------------- 141 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~---~~~~~------------- 141 (183)
+..+++.+|++++|+|+++.... ....++..... .++|+++++||+|+...... .++.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 99999999999999999986432 23333333322 36899999999998642110 01111
Q ss_pred -------------------------------------------hcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 142 -------------------------------------------ALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 142 -------------------------------------------~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.+........-+|++..||.++.|++.+++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 1111111235678999999999999999999998775
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-21 Score=146.78 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC--Cccc-----------------ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhH
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG--EVVT-----------------THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (183)
.+|+|+|+.++|||||+++|+.. .+.. ...|+......+.+++.++.+|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999752 2211 1234444455677889999999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhcCcCcc--CCCce
Q 030113 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP---AEITDALSLHSI--KNHDW 153 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~ 153 (183)
..+++.+|++++|+|+++.. ......++..... .++|+++|+||+|+.+.... .++.+.+..... ....+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999998642 3445556665544 35889999999998643221 222222211111 12356
Q ss_pred EEEEeecccCC----------CHHHHHHHHHHhhhc
Q 030113 154 HIQACSALTGD----------GLVDGLEWISQRVTG 179 (183)
Q Consensus 154 ~~~~~S~~~~~----------gi~~~~~~i~~~~~~ 179 (183)
+++++||++|. |++.+|+.+++.++.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 89999999995 899999999998864
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=123.24 Aligned_cols=163 Identities=32% Similarity=0.491 Sum_probs=139.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
++.=|++++|-.|+|||||++.+-.+......||...+...+...+++++.+|.+|+...+..|..|+..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 56778999999999999999999888888888999888888999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc------------CccCCCceEEEEeeccc
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL------------HSIKNHDWHIQACSALT 162 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~S~~~ 162 (183)
.+.++|.+.+..+...+......+.|+++.+||+|.......++..-.+.. .....+.+.+|.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 999999999999999988777788999999999999877665555443321 11112456689999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
+.|--+.|.|+.+.+
T Consensus 178 ~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQYI 192 (193)
T ss_pred cCccceeeeehhhhc
Confidence 999888888876643
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=147.63 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=113.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc--CCcccc-------------cCccc----ceeEEEEEcCeEEEEEEcCCChhhH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL--GEVVTT-------------HPTVG----SNVEELVYKNIRFEAWDVGGQERLR 75 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~--~~~~~~-------------~~~~~----~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (183)
.+-.+|+|+|+.++|||||+++++. +.+... ..+.+ .....+.+++.++.+|||||+.++.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3457899999999999999999986 222211 11223 2334456688999999999999999
Q ss_pred hhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhcCcCcc--CC
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA---EITDALSLHSI--KN 150 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~---~~~~~~~~~~~--~~ 150 (183)
..+..+++.+|++++|+|+++... .....++..... .++|.++++||+|+....... ++.+.+..... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 999999999999999999987532 223334444333 358899999999986543222 22222211011 12
Q ss_pred CceEEEEeecccCC----------CHHHHHHHHHHhhhc
Q 030113 151 HDWHIQACSALTGD----------GLVDGLEWISQRVTG 179 (183)
Q Consensus 151 ~~~~~~~~S~~~~~----------gi~~~~~~i~~~~~~ 179 (183)
..+|++++||++|. |+..+++.+++.++.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 45789999999998 689999999988864
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-21 Score=145.66 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=103.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-----ccCcccceeEEEEE----------------cCeEEEEEEcCCChhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-----THPTVGSNVEELVY----------------KNIRFEAWDVGGQERL 74 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~D~~g~~~~ 74 (183)
+..-|+++|++++|||||++++.+..+.. ..++.+........ ....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45679999999999999999998876532 22333433322211 1124889999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--------------HH
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDR---ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--------------PA 137 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--------------~~ 137 (183)
...+..+++.+|++++|+|+++. +++..+. + + .. .+.|+++++||+|+.+... ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-~---l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-I---L-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-H---H-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 99999999999999999999873 3333321 1 1 11 3689999999999864210 00
Q ss_pred HHHh-----------hcCcCc----------cCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 138 EITD-----------ALSLHS----------IKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 138 ~~~~-----------~~~~~~----------~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
.+.. .+.... ......+++++||++|+|++++++++...
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0100 111110 01245789999999999999999988653
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-21 Score=149.04 Aligned_cols=151 Identities=20% Similarity=0.164 Sum_probs=104.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccce----eEEEEEcCeEEEEEEcCCChhhHhh----------HHhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN----VEELVYKNIRFEAWDVGGQERLRTS----------WATY 81 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~ 81 (183)
+.++|+++|++|||||||+|++.+... ...+..|++ ...+..++.++.+|||||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 457899999999999999999987654 223333333 3345567889999999997665321 1223
Q ss_pred c--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 82 Y--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
+ +.+|++++|+|+++.++.. .++..+.+ .+.|+++++||+|+.+........+.+. +..+++++++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiS 149 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLV 149 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEE
Confidence 2 4789999999998865422 23333322 3689999999999864332222222222 22346799999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
+++++|++++.+.+.+...
T Consensus 150 A~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQA 168 (772)
T ss_pred eecCCCHHHHHHHHHHhhh
Confidence 9999999999999887653
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=137.21 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=111.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhHhhH--------Hhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLRTSW--------ATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (183)
+..++++++|.||+|||||+|+|++.+....+ +|-.+-...+..+++.+.++||+|.....+.. ...+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 46799999999999999999999998865544 44445556677899999999999965433322 3447
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+++|.+++|+|.+.+.+- ....+.. ....++|+++|.||.|+......... . ...+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~~--~d~~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--~------~~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDK--EDLALIE----LLPKKKPIIVVLNKADLVSKIELESE--K------LANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCch--hhHHHHH----hcccCCCEEEEEechhcccccccchh--h------ccCCCceEEEEecC
Confidence 889999999999986221 1111111 12256899999999999766442222 1 11233699999999
Q ss_pred CCCHHHHHHHHHHhhhcc
Q 030113 163 GDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~ 180 (183)
++|++.+.+.|.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999998877654
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-21 Score=131.54 Aligned_cols=146 Identities=19% Similarity=0.194 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc--c--------------------------------cccCcccceeEEEEEcCeEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV--V--------------------------------TTHPTVGSNVEELVYKNIRFE 64 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~--~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 64 (183)
+|+++|+.++|||||+.+|+...- . ....|.......+.+++.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999998853210 0 011233344455667889999
Q ss_pred EEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc------HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-C--
Q 030113 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR------ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-T-- 135 (183)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~-- 135 (183)
+|||||+.++...+...+..+|++++|+|++++.. .......+... ... ...|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 99999998888877788889999999999987421 11122222222 111 236899999999987321 1
Q ss_pred -HHHHHhh----cCcCccCCCceEEEEeecccCCCHH
Q 030113 136 -PAEITDA----LSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 136 -~~~~~~~----~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
..++.+. +.........++++++||++|+|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1222222 2222222346789999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-21 Score=129.12 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=93.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc----------------------------------ccCcccceeEEEEEcCeEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT----------------------------------THPTVGSNVEELVYKNIRFE 64 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~ 64 (183)
+|+++|++++|||||+++|+...-.. ...|.......+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999996532110 11223333344556778999
Q ss_pred EEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhh
Q 030113 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--AEITDA 142 (183)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--~~~~~~ 142 (183)
+|||||++++...+...++.+|++++|+|++++..-. ....+ .+.... ...++++|+||+|+.+.... .+....
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999988777777889999999999998763211 11111 121111 12457889999998643211 111112
Q ss_pred cCc--CccCCCceEEEEeecccCCCHHHH
Q 030113 143 LSL--HSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 143 ~~~--~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+.. ........+++++||+++.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 111 111123457999999999999753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-21 Score=146.37 Aligned_cols=143 Identities=21% Similarity=0.187 Sum_probs=96.6
Q ss_pred cCCCCCHHHHHHHhccCCcc-cccC--cccceeEEEEEcCeEEEEEEcCCChhhHhh------HHhhc--cCCCEEEEEE
Q 030113 24 GLDNAGKTTTLYKLHLGEVV-TTHP--TVGSNVEELVYKNIRFEAWDVGGQERLRTS------WATYY--RGTHAVIVVI 92 (183)
Q Consensus 24 G~~~~GKStl~~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~ii~v~ 92 (183)
|++|+|||||+|++.+.... .+.+ |.......+.+++.++.+|||||+.++... ...++ +++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987642 2222 222333445667788999999998775432 33333 4789999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|+++.+.. ..+..+..+ .++|+++|+||+|+.+........+.+. +..+.+++++||++|+|+++++++
T Consensus 81 Dat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence 99875432 222233322 3689999999999854322211112221 123457999999999999999999
Q ss_pred HHHhh
Q 030113 173 ISQRV 177 (183)
Q Consensus 173 i~~~~ 177 (183)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98754
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-21 Score=147.26 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
-|+++|+.++|||||++++.+..... ...|+...+..+.. ++..+.+|||||++++...+...+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 57899999999999999998643221 23343333333333 356789999999999988888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCHHHHHhhcCcCc--cCCCceEEEEeecccCCCHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTPAEITDALSLHS--IKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|++++-. ......+. ++.. .+.| +++|+||+|+.+.....+..+.+.... ......+++++|+++|.|+++
T Consensus 82 Vda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99987421 11112222 2221 2344 679999999975433333222222111 112346899999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
++++|.+....
T Consensus 157 L~~~L~~~~~~ 167 (614)
T PRK10512 157 LREHLLQLPER 167 (614)
T ss_pred HHHHHHHhhcc
Confidence 99999876544
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-21 Score=130.00 Aligned_cols=151 Identities=22% Similarity=0.185 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc-----------------cC-------ccccee-----------------EEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT-----------------HP-------TVGSNV-----------------EELV 57 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~-----------------~~-------~~~~~~-----------------~~~~ 57 (183)
||+++|+.++|||||++++..+.+... .. ..++.. ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 588999999999999999976544210 00 111111 1223
Q ss_pred EcCeEEEEEEcCCChhhHhhHHhhcc--CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC
Q 030113 58 YKNIRFEAWDVGGQERLRTSWATYYR--GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135 (183)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~ 135 (183)
..+..+.++||||++++.......+. .+|++++|+|+..+.. ......+..+. . .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~-~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLAL-A---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCEEEEEECccccCHHH
Confidence 34678999999999998777666664 6899999999976532 11222222222 2 3588999999999865433
Q ss_pred HHHHH----hhcCcC---------------------ccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 136 PAEIT----DALSLH---------------------SIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 136 ~~~~~----~~~~~~---------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
..+.. +.+... .......|+|.+|+.+|+|+++++..|.
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 32222 222210 0112345899999999999999997764
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=120.41 Aligned_cols=163 Identities=17% Similarity=0.232 Sum_probs=110.5
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCC-cccccCcccceeEEEEEc-CeEEEEEEcCC----------ChhhHhhH
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGE-VVTTHPTVGSNVEELVYK-NIRFEAWDVGG----------QERLRTSW 78 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g----------~~~~~~~~ 78 (183)
.+.+....-|+++|.+|+|||||+|++++.. ...++.|.|.+...--+. .-.+.++|.|| +++....+
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 3445567899999999999999999999965 566777777554332222 12388999998 34555566
Q ss_pred Hhhcc---CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH----HHHhhcCcCccCCC
Q 030113 79 ATYYR---GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA----EITDALSLHSIKNH 151 (183)
Q Consensus 79 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~ 151 (183)
..|++ +..++++++|+..+- ......+...+.. .+.|++++.||+|..+..... .+.+.+.... ...
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~-~~~ 171 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP-PDD 171 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC-Ccc
Confidence 66664 357899999998663 2333333333333 579999999999987754443 2332332221 111
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
.+ ++..|+..+.|++++...|.+.+...
T Consensus 172 ~~-~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 172 QW-VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred ce-EEEEecccccCHHHHHHHHHHHhhcc
Confidence 11 88889999999999999999877653
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=141.32 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=102.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEE---------c-------CeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVY---------K-------NIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~---------~-------~~~~~~~D~~g~~ 72 (183)
..+...|+++|++++|||||++++.+...... .++.+........ . -..+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 45677899999999999999999976553321 1233333222111 0 0127899999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--------------
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTD---RARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-------------- 135 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-------------- 135 (183)
.+...+...+..+|++++|+|+++ ++++..+. .+ .. .++|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----IL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999988888899999999999987 34443332 11 11 3689999999999852111
Q ss_pred HH-----------HHHhhcCcCcc----------CCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 136 PA-----------EITDALSLHSI----------KNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 136 ~~-----------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
.. ++...+..... ....++++++||++|+|++++++.+..
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 01111111110 124678999999999999999988764
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=121.69 Aligned_cols=151 Identities=21% Similarity=0.178 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc-ccccCcccceeEE--EEEcCeEEEEEEcCCCh----------hhHhhHHhhcc--
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVEE--LVYKNIRFEAWDVGGQE----------RLRTSWATYYR-- 83 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~-- 83 (183)
.|+++|++|+|||||++.+.+... ....++.+.+... +.. ...+.+|||||.. .+...+..++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 378999999999999999995443 3344444433222 222 2389999999942 23344444443
Q ss_pred -CCCEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEee
Q 030113 84 -GTHAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACS 159 (183)
Q Consensus 84 -~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (183)
..+++++++|.....+.. .+..++.. .+.|+++++||+|+.................. .....+++++|
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 457899999998653221 22233322 24789999999998644333322222221111 23445799999
Q ss_pred cccCCCHHHHHHHHHHhh
Q 030113 160 ALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~ 177 (183)
++++.|++++++++.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=139.00 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=107.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc----------c---------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV----------V---------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|+.++|||||+++|++... . ....|.......+..++.++.++||||++++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 57789999999999999999999975311 0 1112333333334446678999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCHH-----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTPA-----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~~-----~~~~~~~~~~~ 148 (183)
.......+..+|++++|+|++++.. ......+..+.. .++| +++++||+|+.+..... ++.+.+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 8888777889999999999986422 112223332222 2466 67899999986432221 22222222222
Q ss_pred CCCceEEEEeecccCC--------CHHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSALTGD--------GLVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~--------gi~~~~~~i~~~~~ 178 (183)
....++++++|+++|. ++.++++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2235789999999983 68888888887765
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-21 Score=123.25 Aligned_cols=159 Identities=24% Similarity=0.381 Sum_probs=131.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..++++++|+.|.||||+.++.+.++|.. +.+|.|........ +.+++..|||.|++++......++-+..++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47999999999999999999999998876 66888988776544 34899999999999999998888888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
++|++..-.+.++..|...+.... .++|+++++||.|........ .........+..++++|++.+.|++.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~-----k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKA-----KPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccccc-----ccceeeecccceeEEeecccccccccch
Confidence 999998888999999999987654 459999999999975442111 1112223356679999999999999999
Q ss_pred HHHHHhhhccC
Q 030113 171 EWISQRVTGKA 181 (183)
Q Consensus 171 ~~i~~~~~~~~ 181 (183)
-|+...+...+
T Consensus 162 l~LarKl~G~p 172 (216)
T KOG0096|consen 162 LWLARKLTGDP 172 (216)
T ss_pred HHHhhhhcCCC
Confidence 99999887654
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=127.92 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc--cc-----------------------ccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV--VT-----------------------THPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~--~~-----------------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
.+|+++|++|+|||||+++++...- .. ...++......+.+++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5799999999999999999964211 00 0112223445677789999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++......+++.+|++++|+|+++.... ....++.. ... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~-~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEV-CRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHH-HHh---cCCCEEEEEECCccCC
Confidence 9888778889999999999999875322 22233322 222 4689999999999754
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=137.77 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=105.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC-------Cc---c---------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG-------EV---V---------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~-------~~---~---------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|++++|||||+++|++. .+ . ....|.......+..++.++.++||||++++
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 467899999999999999999999752 10 0 1112333333334446778999999999998
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEeCCCCCCCCCH-H----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQDLKDAMTP-A----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi-lv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (183)
...+...+..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+.... . ++...+.....
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 8888888889999999999987422 222233333322 346755 57999998643221 1 22222222211
Q ss_pred CCCceEEEEeecccCC----------CHHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSALTGD----------GLVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~----------gi~~~~~~i~~~~~ 178 (183)
....++++++|+.++. ++.++++.+.+.+.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 1235789999999984 67888888887654
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=125.42 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=108.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE----EEEEcCeEEEEEEcCCCh------h------hHhhH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE----ELVYKNIRFEAWDVGGQE------R------LRTSW 78 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~------~------~~~~~ 78 (183)
.+.++|+|+|.||+|||||.|.+.+......+.-..++.. .+.-+..++.|+||||-- + +....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 5779999999999999999999999987765544443333 344478999999999921 1 11122
Q ss_pred HhhccCCCEEEEEEeCCCcccHHH--HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-----------------HHHH
Q 030113 79 ATYYRGTHAVIVVIDSTDRARISI--MKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-----------------PAEI 139 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-----------------~~~~ 139 (183)
...+..+|.+++|+|+++...... .-..+..+ .+.|-++|.||.|...... ..++
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 334678999999999996432211 11222222 3578899999999754211 1112
Q ss_pred HhhcCcCc-----cC---C-CceEEEEeecccCCCHHHHHHHHHHhhhccCCC
Q 030113 140 TDALSLHS-----IK---N-HDWHIQACSALTGDGLVDGLEWISQRVTGKAPS 183 (183)
Q Consensus 140 ~~~~~~~~-----~~---~-~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~~ 183 (183)
.+...... .. . +.-++|.+||++|+|++++.+++..+++..+|.
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence 22211111 00 1 233599999999999999999999999988773
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=128.17 Aligned_cols=109 Identities=19% Similarity=0.135 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc--c-------------------cccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV--V-------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
+|+++|++++|||||+++++...- . ....+.......+.+++.++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999963110 0 1122344445667778999999999999999888
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+++.+|++++|+|+.+...- .....+..... .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 99999999999999999875321 12233333322 4589999999999863
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=127.18 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=80.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc---------------------ccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT---------------------THPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
+|+++|++|+|||||+++++...... ...+.......+.+++.++.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 48999999999999999986432110 112333444556678899999999999998888
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..++..+|++++|+|+++....... ..+.... ..+.|.++++||+|+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~----~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFAD----EAGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECCccCC
Confidence 88899999999999999876543222 2222222 23589999999999763
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=110.60 Aligned_cols=163 Identities=19% Similarity=0.289 Sum_probs=124.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeE-EEEE---cCeEEEEEEcCCChhh-HhhHHhhccCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVE-ELVY---KNIRFEAWDVGGQERL-RTSWATYYRGTH 86 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~-~~~~---~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 86 (183)
.+..|++|+|..++|||+++..++.++.. +..+|+.-.+. .+.. ..-.+.++||.|-... ..+-..|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 46789999999999999999999776543 23455543332 2222 2357899999996655 556678889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++++||+..+++||+.....-..+-.+.....+|+++++||.|+.++ .++....+..+++...+..+++++.+...+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999887766666666666677999999999999754 333334444555667788999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 030113 167 VDGLEWISQRVTGK 180 (183)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (183)
-+.|..++..+...
T Consensus 164 ~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 164 YEPFTYLASRLHQP 177 (198)
T ss_pred hhHHHHHHHhccCC
Confidence 99999999887654
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=135.01 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=97.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-------------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.+..++|+++|++++|||||+++|++.... ....|.......+..++.++.++||||+.++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 567799999999999999999999864110 0111222223334456778999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-A----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (183)
...+...+..+|++++|+|+..+-. ......+..+.. .++| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888899999999999986521 222223333222 3467 7789999998753221 1 22233322222
Q ss_pred CCCceEEEEeecccCCC
Q 030113 149 KNHDWHIQACSALTGDG 165 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~g 165 (183)
....++++++|+.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22357899999999863
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=133.87 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=101.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC-------c-----c-------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE-------V-----V-------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~-------~-----~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|+.++|||||+++|.+.. . . ....|.......+..++.++.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4678999999999999999999997320 0 0 1223333334444446778999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEeCCCCCCCCCHH-----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQDLKDAMTPA-----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi-lv~nK~Dl~~~~~~~-----~~~~~~~~~~~ 148 (183)
...+......+|++++|+|+.++-.. .....+..+.. .++|.+ +++||+|+.+..... ++.+.+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 87777778889999999999874221 12223333322 245654 689999986532211 22233322222
Q ss_pred CCCceEEEEeecccCC--------CHHHHHHHHHHh
Q 030113 149 KNHDWHIQACSALTGD--------GLVDGLEWISQR 176 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~--------gi~~~~~~i~~~ 176 (183)
....++++++|+.++. ++.++++.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 2234789999999875 345566655543
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=131.83 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=106.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-------------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|+.++|||||+++|++.... ....|.......+..++.++.++||||+.++
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 467899999999999999999999762110 1112333333344446778999999999998
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEeCCCCCCCCC-HH----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQDLKDAMT-PA----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi-lv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 148 (183)
.......+..+|++++|+|+.++.. ......+..+.. .++|.+ +++||+|+.+... .+ ++...+.....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 8888888899999999999987522 122223333222 347765 5899999864222 11 22222222222
Q ss_pred CCCceEEEEeecccCC----------CHHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSALTGD----------GLVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~----------gi~~~~~~i~~~~~ 178 (183)
....++++++|++++. |+..+++.|.+.+.
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 2245789999999875 56788888877553
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-19 Score=133.22 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=82.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc--CCccc-----------------------ccCcccceeEEEEEcCeEEEEEEcC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL--GEVVT-----------------------THPTVGSNVEELVYKNIRFEAWDVG 69 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~D~~ 69 (183)
.+..+|+|+|++++|||||+++++. +.... ...++......+.+++.++.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999963 11000 0112223345577788999999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
|+.++......++..+|++++|+|+++.-.. ....++... . ..++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-R---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-H---hcCCCEEEEEECCcccc
Confidence 9999988888889999999999999875321 222333322 2 24689999999999864
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=135.96 Aligned_cols=115 Identities=21% Similarity=0.098 Sum_probs=88.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--------------c-------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--------------V-------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+..+|+|+|+.++|||||+++++...- . ....|+......+.+....+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 34668999999999999999999974210 0 12335555566777889999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
++...+..+++.+|++++|+|+++....... ..+..... .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 9999999999999999999999987655433 23333222 36899999999998753
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.7e-19 Score=129.41 Aligned_cols=156 Identities=22% Similarity=0.206 Sum_probs=112.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.+.+-|+++|+...|||||+.++-....... ..|..+--..+.. ....+.|+|||||+.|..+.....+-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 4567789999999999999999965543221 1222222333343 346899999999999999999989999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC----CCceEEEEeecccCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK----NHDWHIQACSALTGD 164 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~ 164 (183)
++|+|+.+. +...-.+..++....+.|++++.||+|+.+. .+..+...++..... .....++++||++|+
T Consensus 83 ILVVa~dDG-----v~pQTiEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDG-----VMPQTIEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCC-----cchhHHHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999987 2222233334444468999999999999743 444545444433222 245789999999999
Q ss_pred CHHHHHHHHHHh
Q 030113 165 GLVDGLEWISQR 176 (183)
Q Consensus 165 gi~~~~~~i~~~ 176 (183)
|+++|++.+.-.
T Consensus 157 Gi~eLL~~ill~ 168 (509)
T COG0532 157 GIDELLELILLL 168 (509)
T ss_pred CHHHHHHHHHHH
Confidence 999999987654
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=121.74 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc----cccCcccceeEEEEE-cCeEEEEEEcCCChhhHh-----hHHhhccCCCEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV----TTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRT-----SWATYYRGTHAV 88 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~i 88 (183)
||+++|+.++||||+.+.+..+-.+ ...+|..++...+.. ..+.+++||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999988766433 234676666666653 568999999999876543 356778999999
Q ss_pred EEEEeCCCccc---HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhc----CcCc--cCCCceEEEEee
Q 030113 89 IVVIDSTDRAR---ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDAL----SLHS--IKNHDWHIQACS 159 (183)
Q Consensus 89 i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~S 159 (183)
|||+|+...+- +..+...+..+.+. .++..+.++++|+|+..+....+..+.. .... .....+.++.||
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999984432 23333444444333 3789999999999986543332222111 1111 011247899999
Q ss_pred cccCCCHHHHHHHHHHhhhccCC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
..+. .+-++|..+++.+.++.+
T Consensus 159 I~D~-Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 159 IWDE-SLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp TTST-HHHHHHHHHHHTTSTTHC
T ss_pred CcCc-HHHHHHHHHHHHHcccHH
Confidence 8884 799999999999886643
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=120.59 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=112.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc---ccccCcccceeEEEEEcCeEEEEEEcCCCh------hhH--hhHHhhcc-
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV---VTTHPTVGSNVEELVYKNIRFEAWDVGGQE------RLR--TSWATYYR- 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------~~~--~~~~~~~~- 83 (183)
....|+|.|.||||||||++++.+... +..-+|.+++...+..+..++|++||||-- +.. .+-...++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 558899999999999999999987653 234578889999999999999999999921 111 11112222
Q ss_pred CCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 84 GTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
-.++++|++|++..+ +++.....+..+.... +.|+++|+||+|..+.....+....+... .......+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~----~~~~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEE----GGEEPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhh----ccccccceeee
Confidence 358999999999665 5677777888876654 38999999999998665555554443322 22235677888
Q ss_pred cCCCHHHHHHHHHHhh
Q 030113 162 TGDGLVDGLEWISQRV 177 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~ 177 (183)
.+.+++.+-+.+....
T Consensus 320 ~~~~~d~~~~~v~~~a 335 (346)
T COG1084 320 KGCGLDKLREEVRKTA 335 (346)
T ss_pred ehhhHHHHHHHHHHHh
Confidence 8888887777766653
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-19 Score=132.76 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=98.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc------c-------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV------V-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~------~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|++++|||||+++|++... . ....|.......+..++.++.++|+||++++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45679999999999999999999985210 0 0112222333345557789999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCC-HH----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMT-PA----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 148 (183)
...+...+..+|++++|+|+.++.. .....++..... .++| +++++||+|+.+... .+ ++...+.....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888899999999999987632 222333333322 3466 788999999865322 11 22233322222
Q ss_pred CCCceEEEEeecccCC
Q 030113 149 KNHDWHIQACSALTGD 164 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~ 164 (183)
....++++++|+.++.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 3347899999998874
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-19 Score=132.37 Aligned_cols=153 Identities=20% Similarity=0.164 Sum_probs=98.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcc--c------------cc----------------------CcccceeEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV--T------------TH----------------------PTVGSNVEEL 56 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~--~------------~~----------------------~~~~~~~~~~ 56 (183)
..+..++|+++|++++|||||+++|+...-. . .. .|+......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 4577899999999999999999999643210 0 00 1223333445
Q ss_pred EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-
Q 030113 57 VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT- 135 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~- 135 (183)
..++.++.++||||++++...+...+..+|++++|+|+.++-.-. ....+... ... ...|+++++||+|+.+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~-~~l--g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIA-TLL--GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHH-HHh--CCCceEEEEEeeccccchhH
Confidence 556789999999999998777777789999999999998652111 11111111 111 1247899999999864321
Q ss_pred -HHHHHhhcCc--CccC-CCceEEEEeecccCCCHHHH
Q 030113 136 -PAEITDALSL--HSIK-NHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 136 -~~~~~~~~~~--~~~~-~~~~~~~~~S~~~~~gi~~~ 169 (183)
..++.+.+.. .... ....+++++||++|+|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2222222211 0001 23578999999999999764
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=114.41 Aligned_cols=167 Identities=25% Similarity=0.349 Sum_probs=121.3
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhcc---CCC
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYR---GTH 86 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d 86 (183)
....+.+.-.|+++|+.+||||+|+..+..+....+.++...+...+..+.....++|.||+.+.+.....++. .+-
T Consensus 31 ~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 31 KLFRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred HHHhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccce
Confidence 33444556789999999999999999999988877778888888888888888999999999999998888887 789
Q ss_pred EEEEEEeCCCcc-cHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc--------C---------
Q 030113 87 AVIVVIDSTDRA-RISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAMTPAEITDALSL--------H--------- 146 (183)
Q Consensus 87 ~ii~v~d~~~~~-s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~--------~--------- 146 (183)
++++|+|..... ........+-.++... ....+|+++++||.|+......+...+.+.. +
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~e 190 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDE 190 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 999999986432 1333344444444332 3456999999999998654332211111100 0
Q ss_pred ------------------ccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 147 ------------------SIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 147 ------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......+.+.++|++++ +++++-+|+.+.+
T Consensus 191 d~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 191 DIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00114567899999999 7999999998753
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=130.55 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=102.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC--cc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE--VV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~--~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.++.++|+++|+.++|||||+.+|+... .. ....|.......+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4678999999999999999999886411 00 0112333444556667
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc---H---HHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR---I---SIMKDELFRLLGHEDLQHSV-VLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~ 132 (183)
+..+.++||||+.+|...+...+..+|++++|+|++++.- + ......+..... .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 8899999999999999999998999999999999987531 1 123333333322 2444 679999999432
Q ss_pred ----CCCHHH----HHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 133 ----AMTPAE----ITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 133 ----~~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+....+ +.+.+.........++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 122222 333333222223468999999999999864
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.5e-19 Score=120.60 Aligned_cols=108 Identities=21% Similarity=0.189 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc----------------------cCcccceeEEEEE-----cCeEEEEEEcCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT----------------------HPTVGSNVEELVY-----KNIRFEAWDVGGQ 71 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~----------------------~~~~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (183)
+|+++|+.++|||||+++++....... ..+.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999976432211 0111111122222 2478999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.++...+..++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888899999999999999987765432 233333322 348999999999975
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=129.13 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=101.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--c--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--V--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.++.++|+++|+.++|||||+.+|+...- . +...|+......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 46789999999999999999988853110 0 0112333444455667
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccH-------HHHHHHHHHHhCCCCCCCC-eEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARI-------SIMKDELFRLLGHEDLQHS-VVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~-~vilv~nK~Dl~ 131 (183)
...+.++|+||+++|...+...+..+|++++|+|+++.. | ......+..... .++ ++++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCC
Confidence 889999999999999999999999999999999998732 2 123333333222 245 578899999976
Q ss_pred CCC----C----HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 132 DAM----T----PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 132 ~~~----~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+.. . ..++...+.........++++++|+++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 1 223333333222233457899999999999853
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=129.75 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=108.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc------ccC--cccceeE---------------EEEE-----------
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT------THP--TVGSNVE---------------ELVY----------- 58 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~------~~~--~~~~~~~---------------~~~~----------- 58 (183)
..+..++|+++|+..+|||||+.+|.+..... ... ..|+... .+..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 45778999999999999999999998643211 111 1222211 0000
Q ss_pred -----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 59 -----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
-...+.++|+||++++...+...+..+|++++|+|+.++.........+... ... .-.++++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCH
Confidence 0247899999999999888888899999999999998742112222333222 111 12568999999998754
Q ss_pred CCHHHHHhhcCcC--ccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 134 MTPAEITDALSLH--SIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 134 ~~~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
....+..+.+... ......++++++||++|.|++++++.|.+.+..
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 3322222222111 011246789999999999999999999976653
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=118.60 Aligned_cols=126 Identities=26% Similarity=0.403 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE---cCeEEEEEEcCCChhhHhhHHhh---ccCCCEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY---KNIRFEAWDVGGQERLRTSWATY---YRGTHAVI 89 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~ii 89 (183)
+...|+++|+.|+|||+|+.+|..+....+.++...+. .+.. ....+.++|+||+.+.+...... ...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 34578999999999999999999987766555553332 2222 45689999999999988765554 78899999
Q ss_pred EEEeCCCc-ccHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhh
Q 030113 90 VVIDSTDR-ARISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAMTPAEITDA 142 (183)
Q Consensus 90 ~v~d~~~~-~s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~~~~~~~~~ 142 (183)
||+|.+.. ..+......+..++... .....|++|++||.|+........+...
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~ 136 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKL 136 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHH
Confidence 99999743 34555555555554322 2356999999999999776554444433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=129.67 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=104.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC------Ccc-------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG------EVV-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|+.++|||||+++|.+. ... ....|.......+..++.++.++||||+.++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467899999999999999999999622 100 0122344444445556788999999999998
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-HHHH----hhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-AEIT----DALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-~~~~----~~~~~~~~ 148 (183)
...+...+..+|++++|+|+.++.. ......+..+.. .++| +++++||+|+.+.... +.+. +.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8877777788999999999986532 112222222221 3577 5788999998743221 1121 22211111
Q ss_pred CCCceEEEEeecc---cCCC-------HHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSAL---TGDG-------LVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~---~~~g-------i~~~~~~i~~~~~ 178 (183)
....++++++|+. ++.| +.++++.+.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2235789998875 4555 7888888887664
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=131.55 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=105.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc-ccc--cCcccceeEEEEEcCeEEEEEEcCCChhh------HhhHHhhc--cC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-VTT--HPTVGSNVEELVYKNIRFEAWDVGGQERL------RTSWATYY--RG 84 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~ 84 (183)
+..+++++|+||+|||||+|++.+... ..+ .-|++-....+..++..++++|+||.-++ +.....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 456799999999999999999988764 222 33444445556678888999999994322 12223333 35
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA----MTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
.|+++-|+|+++.++--.+.-++.+ .+.|++++.|++|..+. .+.+++.+. .++|++++||
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE-------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~--------LGvPVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLE-------LGIPMILALNMIDEAKKRGIRIDIEKLSKL--------LGVPVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHH-------cCCCeEEEeccHhhHHhcCCcccHHHHHHH--------hCCCEEEEEe
Confidence 6999999999987543333333332 36889999999997543 223333333 3568999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|+|++++.+.+.+....+
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 147 KRGEGLEELKRAIIELAESK 166 (653)
T ss_pred ecCCCHHHHHHHHHHhcccc
Confidence 99999999999998765544
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=117.48 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=95.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc---ceeEEEEE---cCeEEEEEEcCCChhhHhhH-----HhhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG---SNVEELVY---KNIRFEAWDVGGQERLRTSW-----ATYYRG 84 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~---~~~~~~~~---~~~~~~~~D~~g~~~~~~~~-----~~~~~~ 84 (183)
+++|+++|++|+|||||+|++.+..... ...+.+ ++.....+ ....+.+|||||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3789999999999999999999865432 112222 11111111 13478999999964322111 222567
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhcCc----Ccc--C
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---------PAEITDALSL----HSI--K 149 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---------~~~~~~~~~~----~~~--~ 149 (183)
+|.+++|.+. ++......+...+.. .+.|+++|+||+|+..... ..++.+.+.. ... .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 244444444444333 2578999999999843211 1122221111 110 0
Q ss_pred CCceEEEEeecc--cCCCHHHHHHHHHHhhhccC
Q 030113 150 NHDWHIQACSAL--TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 150 ~~~~~~~~~S~~--~~~gi~~~~~~i~~~~~~~~ 181 (183)
....++|.+|+. .+.|+..+.+.+...|.+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 123469999998 57999999999999887653
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=127.05 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--c----------------------------------ccCcccceeEEEEEcCe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--T----------------------------------THPTVGSNVEELVYKNI 61 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~----------------------------------~~~~~~~~~~~~~~~~~ 61 (183)
++|+++|+.++|||||+.+|+...-. . ...|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999632210 0 01123333444555678
Q ss_pred EEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHH
Q 030113 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEI 139 (183)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~ 139 (183)
++.++||||+++|...+...+..+|++++|+|+..+..-. ....+...... ...++++++||+|+.+... ..+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHH
Confidence 9999999999999877778889999999999998653211 11112211111 1246889999999864321 1112
Q ss_pred HhhcCc--CccCCCceEEEEeecccCCCHHH
Q 030113 140 TDALSL--HSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
.+.+.. .......++++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 01112356799999999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=119.19 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=111.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEc-CeEEEEEEcCCCh---------hhHhhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYK-NIRFEAWDVGGQE---------RLRTSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~---------~~~~~~~~~ 81 (183)
..-..|+++|.+|+|||||+|++.+.... ....|...+...+... +..+.+-||.|-- .|.+.. ..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL-EE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL-EE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH-HH
Confidence 45689999999999999999999876542 3456777777777776 5889999999932 233322 23
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
...+|.++.|+|++++.....+. ....++........|+++|.||+|+..+... ...+... . . ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~---~-~-~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERG---S-P-NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhc---C-C-CeEEEEec
Confidence 56789999999999995444333 3333444444466999999999997654331 1111111 1 1 48999999
Q ss_pred cCCCHHHHHHHHHHhhhcc
Q 030113 162 TGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~ 180 (183)
+++|++++.+.|.+.+...
T Consensus 340 ~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 340 TGEGLDLLRERIIELLSGL 358 (411)
T ss_pred cCcCHHHHHHHHHHHhhhc
Confidence 9999999999999988744
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=133.31 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=102.0
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCccc--------------cc----------------------Ccc
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT--------------TH----------------------PTV 49 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~--------------~~----------------------~~~ 49 (183)
..+......+..++|+++|++++|||||+++|+...-.. .. .|.
T Consensus 13 ~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Ti 92 (632)
T PRK05506 13 LAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITI 92 (632)
T ss_pred HHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCc
Confidence 345555566788999999999999999999997533110 00 122
Q ss_pred cceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 50 GSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 50 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
...+..+..++.++.++||||++++...+...+..+|++++|+|+..+..- .....+...... ...++++++||+|
T Consensus 93 d~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~---~~~~iivvvNK~D 168 (632)
T PRK05506 93 DVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL---GIRHVVLAVNKMD 168 (632)
T ss_pred eeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh---CCCeEEEEEEecc
Confidence 222334555677999999999999877777778999999999999765321 111111111111 1257899999999
Q ss_pred CCCCCC--HHHHHhhcCc--CccCCCceEEEEeecccCCCHHH
Q 030113 130 LKDAMT--PAEITDALSL--HSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 130 l~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+.+... ..++...+.. ........+++++||++|.|+++
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 864221 1222222211 01122356799999999999874
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-20 Score=121.32 Aligned_cols=162 Identities=19% Similarity=0.286 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
++++|+|.-|+|||+++.+++...+.. +..+++..... ..+ ..+++++||+.||+++..+..-+++.+++.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 899999999999999999998888765 55677754421 222 347889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCC---CeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQH---SVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~---~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
||++....|+....|..........++ .|+++..||+|......... ...+......+.-...+++|++.+.+++|
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~-~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEA-TRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhh-HHHHHHHHhccCccceeeeccccccChhH
Confidence 999999999999999998876544443 88899999999755432221 11111111123344699999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+-+.+++.+.-+
T Consensus 185 a~r~lVe~~lvn 196 (229)
T KOG4423|consen 185 AQRELVEKILVN 196 (229)
T ss_pred HHHHHHHHHHhh
Confidence 999999987644
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-18 Score=117.41 Aligned_cols=154 Identities=22% Similarity=0.275 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcC-eEEEEEEcCCC-------hhhHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKN-IRFEAWDVGGQ-------ERLRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~D~~g~-------~~~~~~~~~~~~~~d 86 (183)
..+.++|.||+|||||++++...... ...+|...+...+.+++ .++.+-|.||. .........+++.++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 56889999999999999999775421 11133333333555544 34899999993 223445566788999
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHhCC-CCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDSTDR---ARISIMKDELFRLLGH-EDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
.++||+|++.+ +.++.+...+.++-.+ ....+.|.++|+||+|+.+.. ......+.... .+..++++||+.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~l---q~~~V~pvsA~~ 351 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRL---QNPHVVPVSAKS 351 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHc---CCCcEEEeeecc
Confidence 99999999988 7777777766666433 233568999999999985322 22212222111 122599999999
Q ss_pred CCCHHHHHHHHHHh
Q 030113 163 GDGLVDGLEWISQR 176 (183)
Q Consensus 163 ~~gi~~~~~~i~~~ 176 (183)
++|+.++++.+.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=127.12 Aligned_cols=112 Identities=21% Similarity=0.300 Sum_probs=80.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc--CCccc-----------------------ccCcccceeEEEEEcCeEEEEEEcC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL--GEVVT-----------------------THPTVGSNVEELVYKNIRFEAWDVG 69 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~D~~ 69 (183)
.+..+|+|+|++++|||||+++++. +.... ...++......+.+++.++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4678999999999999999999852 11100 0112223345567788999999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
|+.++......++..+|++++|+|+++.-. .....++ ..... .++|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~-~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLM-EVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHH-HHHHh---cCCCEEEEEECcccc
Confidence 999988877788999999999999987521 1222333 33322 468999999999985
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=115.04 Aligned_cols=155 Identities=22% Similarity=0.201 Sum_probs=108.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCc--cc-ccCcccceeEEEEEcCeEEEEEEcCCCh-------hhHhhHHhhc
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEV--VT-THPTVGSNVEELVYKNIRFEAWDVGGQE-------RLRTSWATYY 82 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~ 82 (183)
.+.-..+++++|.|++|||||++++.+... .. ..+|.......+.+++.++|++|+||.- .......+..
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 344568999999999999999999987653 11 2355556666788999999999999821 1234566778
Q ss_pred cCCCEEEEEEeCCCccc-HHHHHHHHHHH----------------------------------------hC---------
Q 030113 83 RGTHAVIVVIDSTDRAR-ISIMKDELFRL----------------------------------------LG--------- 112 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~--------- 112 (183)
++||++++|+|+..+.. .+.+...+... +.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999986532 22222211111 00
Q ss_pred ---------------CCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 113 ---------------HEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 113 ---------------~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......+|.++|.||.|+........+.+.. ..+.+||..+.|++++.+.|.+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence 0111248999999999987633332222222 499999999999999999998876
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-17 Score=127.77 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+-.+|+|+|++++|||||+++|+...-. ....|.......+.+++.++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 345679999999999999999999632110 01223344556677789999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++...+..+++.+|++++|+|+.+....... ..+... .. .++|+++++||+|+..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-NR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 9888888999999999999999876443322 223222 21 3589999999999874
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-18 Score=127.71 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=118.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee---EEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV---EELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+.+||+++|+.|+|||||+-.++..++++..|..-..+ ..+.-..+...++|++..+.........++++|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4688999999999999999999999998876443221110 1222245668999998777766777778999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCC--CCCeEEEEEeCCCCCCCCCH--H-HHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDL--QHSVVLIFANKQDLKDAMTP--A-EITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~vilv~nK~Dl~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+|+.+++.+++.+...|.+.+..... .+.|+|+|+||+|....... + .+....... ..--.+++|||++-.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---AEIETCIECSALTLAN 162 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHh---HHHHHHHhhhhhhhhh
Confidence 99999999999999888888765432 46999999999998654332 1 112111110 0011389999999999
Q ss_pred HHHHHHHHHHhhh
Q 030113 166 LVDGLEWISQRVT 178 (183)
Q Consensus 166 i~~~~~~i~~~~~ 178 (183)
+.++|....+.+.
T Consensus 163 ~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 163 VSELFYYAQKAVI 175 (625)
T ss_pred hHhhhhhhhheee
Confidence 9999988766554
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=122.55 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=115.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCc------------------ccccCcccceeEEEEEcC---eEEEEEEcCCChh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEV------------------VTTHPTVGSNVEELVYKN---IRFEAWDVGGQER 73 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~~D~~g~~~ 73 (183)
.+-.++.|+-+...|||||..+++...- .+...|+......+.+.. ..+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4557899999999999999999853211 012234444444555555 8899999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCce
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (183)
|.......+.-|+++++|+|++.+-.=......+..+ + .+..+|.|+||+|+..... +.+...+... +.....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adp-e~V~~q~~~l-F~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADP-ERVENQLFEL-FDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCH-HHHHHHHHHH-hcCCcc
Confidence 9999999999999999999999764333333444433 2 3577999999999976543 3333333221 234455
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++.+||++|.|+++++++|++.++.-
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 799999999999999999999998754
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=122.07 Aligned_cols=155 Identities=23% Similarity=0.218 Sum_probs=116.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc-----cccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV-----TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+..-|.|+|+...|||||+.++-+.... .....+|.....+. ++..+.|.|||||..|..+.....+-+|.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 46678899999999999999999654432 22334444444444 6789999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC----CCceEEEEeecccCCC
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK----NHDWHIQACSALTGDG 165 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~g 165 (183)
+|+.+.|+ +.....+.+.+....+.|+++.+||+|.... .+..+...+...... ..+++++++||++|+|
T Consensus 230 LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 230 LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999887 3333334445555578999999999997643 455555555433222 3688899999999999
Q ss_pred HHHHHHHHHHh
Q 030113 166 LVDGLEWISQR 176 (183)
Q Consensus 166 i~~~~~~i~~~ 176 (183)
++.|-+.+.-.
T Consensus 304 l~~L~eaill~ 314 (683)
T KOG1145|consen 304 LDLLEEAILLL 314 (683)
T ss_pred hHHHHHHHHHH
Confidence 99999987654
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=129.69 Aligned_cols=114 Identities=19% Similarity=0.135 Sum_probs=84.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC-----c---c-------------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE-----V---V-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~-----~---~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+..+|+|+|++++|||||+++|+... . . ....|.......+.+++.++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3466789999999999999999996421 0 0 11234445556677789999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++...+...++.+|++++|+|+.++-.-.. ...+..... .++|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 988889999999999999999987632221 122222222 3588999999999874
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=112.07 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc--c-----------------ccCcccceeEEEEEc----------CeEEEEEEcC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV--T-----------------THPTVGSNVEELVYK----------NIRFEAWDVG 69 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~--~-----------------~~~~~~~~~~~~~~~----------~~~~~~~D~~ 69 (183)
+|+++|+.++|||||+.+|+...-. . ...|+......+.+. ...+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999643210 0 011222222222232 6789999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
|+.++......+++.+|++++|+|++++.+... ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999998754433 222333322 357899999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=99.31 Aligned_cols=103 Identities=20% Similarity=0.269 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChh---------hHhhHHhhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQER---------LRTSWATYYRGT 85 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~~ 85 (183)
+|+|+|.+|+|||||+|+|++..... ...|....+..+.+....+.++||||-.. ........+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999864432 22344444556667889999999999422 111233344889
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK 127 (183)
|++++|+|++++.. ......+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999877321 1122222222 1 56999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-17 Score=116.69 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=102.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC--cc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE--VV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~--~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++++++|+..+|||||+-+|+..- .. +..-|+......+..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4778999999999999999999885321 10 0112333444555556
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc--------HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR--------ISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s--------~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
...+.++|+||+.+|...+.....++|+.|+|+|+++.+- .......+.+.+. -..+|+++||+|+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~v 158 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDLV 158 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEccccc
Confidence 7889999999999999999999999999999999997741 1112223333322 25689999999997
Q ss_pred CCCC--HHH----HHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 132 DAMT--PAE----ITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 132 ~~~~--~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+..+ .++ +...+........+++|+++|+..|+|+.+
T Consensus 159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 6322 122 222222222233468899999999999743
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.9e-17 Score=108.51 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEEcCeEEEEEEcCCChhh-------Hhh----HHhh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVYKNIRFEAWDVGGQERL-------RTS----WATY 81 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~----~~~~ 81 (183)
++|+++|.+|+|||||+|++++...... ..|..+........+..+.++||||-.+. ... ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998764322 34555556666678899999999994322 111 1222
Q ss_pred ccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH--------HHhhcCcCccCCCc
Q 030113 82 YRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE--------ITDALSLHSIKNHD 152 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~ 152 (183)
..++|++++|+++.+... ......++...+... ...++++++|+.|........+ +...+... +
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c-----~ 153 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC-----G 153 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh-----C
Confidence 457899999999876321 223334444443321 2257899999999654332222 22222211 1
Q ss_pred eEEEEe-----ecccCCCHHHHHHHHHHhhhcc
Q 030113 153 WHIQAC-----SALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 153 ~~~~~~-----S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
.+++.. ++.++.+++++++.+-+.+.++
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 123232 2567888999999999988864
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-17 Score=126.91 Aligned_cols=114 Identities=19% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc--CCc------c-------------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL--GEV------V-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~--~~~------~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+-.+|+|+|++++|||||+++|+. +.. . ....|.......+.+++.++.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34567999999999999999999963 110 0 11233334445577788999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++.......+..+|++++|+|+...-.... ...+..... .++|.++++||+|+.+
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 988888888999999999999986632222 222233222 3578999999999864
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-17 Score=115.17 Aligned_cols=156 Identities=27% Similarity=0.298 Sum_probs=97.8
Q ss_pred EEEEcCCCCCHHHHHHHhccCCcc-------cccCcccceeEEE-------------------E-EcCeEEEEEEcCCC-
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVV-------TTHPTVGSNVEEL-------------------V-YKNIRFEAWDVGGQ- 71 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~-------~~~~~~~~~~~~~-------------------~-~~~~~~~~~D~~g~- 71 (183)
|+++|.+++|||||++++.+.... ...++.+...... . .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999887632 2233444333211 0 13368999999996
Q ss_pred ---hhhHh---hHHhhccCCCEEEEEEeCCC---------------cc-cHHHHHHHHHH--------------------
Q 030113 72 ---ERLRT---SWATYYRGTHAVIVVIDSTD---------------RA-RISIMKDELFR-------------------- 109 (183)
Q Consensus 72 ---~~~~~---~~~~~~~~~d~ii~v~d~~~---------------~~-s~~~~~~~~~~-------------------- 109 (183)
++... .....++++|++++|+|++. +. .+..+...+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333 34446899999999999973 10 11111111000
Q ss_pred ------------------------HhCC-C--------------------CCCCCeEEEEEeCCCCCCCCCHHHHHhhcC
Q 030113 110 ------------------------LLGH-E--------------------DLQHSVVLIFANKQDLKDAMTPAEITDALS 144 (183)
Q Consensus 110 ------------------------~~~~-~--------------------~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~ 144 (183)
.+.. . ....+|+++++||.|+... .+..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 0000 0 1234799999999997533 22222222
Q ss_pred cCccCCCceEEEEeecccCCCHHHHHH-HHHHhhhccC
Q 030113 145 LHSIKNHDWHIQACSALTGDGLVDGLE-WISQRVTGKA 181 (183)
Q Consensus 145 ~~~~~~~~~~~~~~S~~~~~gi~~~~~-~i~~~~~~~~ 181 (183)
. .....+++++||+.+.+++++.+ .+.+.+++.+
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 1 12345799999999999999998 6999987754
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=115.90 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=115.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc------------------cccCcccceeEEEEE-----cCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV------------------TTHPTVGSNVEELVY-----KNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (183)
++-.+..|+-+-..|||||..++....-. +...|+..+...+.+ +...+.++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34467899999999999999999642210 122344444444444 3488999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhc-CcCccCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDAL-SLHSIKN 150 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~ 150 (183)
.+|.......+..|.++++|+|++.+-.=..+.+.+..+- .+..++.|+||+||..... ..+.++. ... ..
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp-ervk~eIe~~i--Gi 158 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP-ERVKQEIEDII--GI 158 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH-HHHHHHHHHHh--CC
Confidence 9999988888999999999999998754455566666653 3577999999999976533 3333222 211 12
Q ss_pred CceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 151 HDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 151 ~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.....+.+||++|.||+++++.|++.++.-.
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 2334899999999999999999999987644
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=116.75 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=108.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee----EEEEEcCeEEEEEEcCCChh-hH--------hhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV----EELVYKNIRFEAWDVGGQER-LR--------TSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~g~~~-~~--------~~~~~~ 81 (183)
+..++|+|+|+||+|||||+|+|...+....++..|++. ..++.++.++.+.||+|..+ -. ..-...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 456999999999999999999999998776666656443 45667899999999999544 11 112344
Q ss_pred ccCCCEEEEEEeC--CCcccHHHHHHHHHHHhC-----CCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCce
Q 030113 82 YRGTHAVIVVIDS--TDRARISIMKDELFRLLG-----HEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDW 153 (183)
Q Consensus 82 ~~~~d~ii~v~d~--~~~~s~~~~~~~~~~~~~-----~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 153 (183)
++.+|.+++|+|+ ++.++-..+...+...-. .......|++++.||.|+..... .......+... ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 6789999999999 333333333333333321 11223478999999999875521 11100111111 112233
Q ss_pred E-EEEeecccCCCHHHHHHHHHHhhhc
Q 030113 154 H-IQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 154 ~-~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+ ..++|+++++|++.+.+.+.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 3 5559999999999999998886643
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.2e-16 Score=116.84 Aligned_cols=113 Identities=18% Similarity=0.114 Sum_probs=73.0
Q ss_pred eEEEEEEcCCChh-----hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC
Q 030113 61 IRFEAWDVGGQER-----LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135 (183)
Q Consensus 61 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~ 135 (183)
.++.++||||-.. +...+...+.++|++++|+|+...-+..+ ..+...+.... .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 4788999999533 33345567899999999999987533222 22223332211 1259999999999864222
Q ss_pred --HHHHHhhcCcC--ccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 136 --PAEITDALSLH--SIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
...+.+..... ........+|++||++|.|++++++.|.++
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 33333332211 112234469999999999999999998873
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-16 Score=121.53 Aligned_cols=106 Identities=19% Similarity=0.125 Sum_probs=78.7
Q ss_pred EcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhh
Q 030113 23 VGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATY 81 (183)
Q Consensus 23 iG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (183)
+|++++|||||+++|+...-. ....|++.....+.+.+..+.+|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999432110 11234455556677889999999999999988888889
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+..+|++++|+|+++....... ..+..... .+.|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9999999999999887544332 22333222 35899999999998643
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=110.28 Aligned_cols=155 Identities=24% Similarity=0.239 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC-------cccccCcccceeEEEEEcCeEEEEEEcCCC-------hhhHhhHHhhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE-------VVTTHPTVGSNVEELVYKNIRFEAWDVGGQ-------ERLRTSWATYYR 83 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~~~~~~~~~~~ 83 (183)
--|.++|.|++|||||++++.... |....|..|+-.. ...-.+.+-|.||- .........+++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 457899999999999999997644 2333344443222 34567999999982 223445566788
Q ss_pred CCCEEEEEEeCCCccc------HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC-CCCHHHHHhhcCcCccCCCceEEE
Q 030113 84 GTHAVIVVIDSTDRAR------ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD-AMTPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
.+.+++.|+|++..+. +..+...+..+- ....++|.++|.||+|+.. .+..+++.+.+.... .....++
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~--~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--~~~~~~~ 312 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS--PKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--GWEVFYL 312 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh--HHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc--CCCccee
Confidence 9999999999985542 333334444432 2335799999999999543 333444444443221 1111233
Q ss_pred EeecccCCCHHHHHHHHHHhhhcc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+|+.+++|++++...+.+.+.+.
T Consensus 313 -ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 313 -ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred -eehhcccCHHHHHHHHHHHHHHh
Confidence 99999999999999998887765
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=111.07 Aligned_cols=132 Identities=15% Similarity=0.226 Sum_probs=100.3
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+.+++..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..+++.....
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 55666667777888999999999999999999999999999999999974 46788888899998877778
Q ss_pred CCeEEEEEeCCCCCCC-----------------CCHHHHHhhcC----cCcc--CCCceEEEEeecccCCCHHHHHHHHH
Q 030113 118 HSVVLIFANKQDLKDA-----------------MTPAEITDALS----LHSI--KNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~-----------------~~~~~~~~~~~----~~~~--~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+.|+++++||.|+..+ .......+... .... ....+..+.++|.+..++..+|+.+.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 8999999999997421 11111111111 1110 12456678889999999999999887
Q ss_pred Hhhhc
Q 030113 175 QRVTG 179 (183)
Q Consensus 175 ~~~~~ 179 (183)
+.+..
T Consensus 331 ~~I~~ 335 (342)
T smart00275 331 DIILQ 335 (342)
T ss_pred HHHHH
Confidence 76654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=95.72 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCC----hhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQ----ERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
|++++|..|+|||||.+++.+.... +..|..+.+. +. -.+||||. ..+.........++|.+++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~~-----d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEFN-----DK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-hcccceeecc-----Cc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 7899999999999999999776532 2222222221 10 13699983 33333344456889999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+++++. +...+ .....+|+|-+++|.|+.++.+.....+++.+.. .-++|.+|+.++.|++++++.+.
T Consensus 75 nd~~s~--f~p~f------~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGF------LDIGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCccc------ccccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHHH
Confidence 988642 11111 1223467999999999997666666666665443 33699999999999999999886
Q ss_pred H
Q 030113 175 Q 175 (183)
Q Consensus 175 ~ 175 (183)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 5
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=111.60 Aligned_cols=133 Identities=18% Similarity=0.281 Sum_probs=102.0
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+.+++..+.+||++|+...+..|..++.+++++++|+|.++. .++.+....+..+++.....
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 56666667777889999999999999999999999999999999999974 56788888888888877777
Q ss_pred CCeEEEEEeCCCCCCC------------------CCHHHHHhhcCc-----CccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 118 HSVVLIFANKQDLKDA------------------MTPAEITDALSL-----HSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+.|+++++||.|+..+ ....+..+.... .......+..+.++|.+..+++.+|+.+.
T Consensus 228 ~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~ 307 (317)
T cd00066 228 NTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVK 307 (317)
T ss_pred CCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHH
Confidence 8999999999996421 111222211111 11113456678899999999999999998
Q ss_pred Hhhhcc
Q 030113 175 QRVTGK 180 (183)
Q Consensus 175 ~~~~~~ 180 (183)
+.+..+
T Consensus 308 ~~i~~~ 313 (317)
T cd00066 308 DIILQN 313 (317)
T ss_pred HHHHHH
Confidence 877654
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=111.39 Aligned_cols=78 Identities=29% Similarity=0.385 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc---c----cCcccceeEEEE--------------------EcCeEEEEEEcCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT---T----HPTVGSNVEELV--------------------YKNIRFEAWDVGG 70 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~---~----~~~~~~~~~~~~--------------------~~~~~~~~~D~~g 70 (183)
++|+++|.||+|||||++++.+..... . .++.|....... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999998776432 1 233332221000 1236789999999
Q ss_pred C----hh---hHhhHHhhccCCCEEEEEEeCC
Q 030113 71 Q----ER---LRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 71 ~----~~---~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
- .+ ........++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 22 2234444589999999999997
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.3e-16 Score=105.25 Aligned_cols=162 Identities=20% Similarity=0.215 Sum_probs=108.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccccc---Cccc-ceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH---PTVG-SNVEELVYKNIRFEAWDVGGQER-------LRTSWATYY 82 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 82 (183)
.+.+++++++|.+|+||||++|++.+++..+.. .... .++....+..-.+.+||+||-.+ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 568899999999999999999999976544322 1111 22233445567899999998433 677788889
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC---------CHHHHHh-------hcCcC
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM---------TPAEITD-------ALSLH 146 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~---------~~~~~~~-------~~~~~ 146 (183)
.+.|.+++++++.++.- .--...+..+.... .+.++++++|.+|...+. ......+ .....
T Consensus 116 ~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRAL-GTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCccc-cCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999987741 11122333333221 348899999999975432 0011111 11111
Q ss_pred ccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 147 SIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
. ..--|++..|...+.|++++...+++.+...
T Consensus 193 ~--q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 193 F--QEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred H--hhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 1 1233688888999999999999999988654
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=108.25 Aligned_cols=117 Identities=21% Similarity=0.100 Sum_probs=73.8
Q ss_pred eEEEEEEcCCChhh---HhhHHhh---ccC--CCEEEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 61 IRFEAWDVGGQERL---RTSWATY---YRG--THAVIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 61 ~~~~~~D~~g~~~~---~~~~~~~---~~~--~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
..+.+||+||+.+. ...+..+ +.. .+++++|+|++......... .++...... ...+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhc
Confidence 37999999997663 2233222 233 89999999997654333222 222221110 01368999999999987
Q ss_pred CCCCHHHHHhhcCc-------------------------CccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 132 DAMTPAEITDALSL-------------------------HSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 132 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+.....+....+.. ........+++++|+++++|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 66544443333221 000122357999999999999999999988764
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=105.67 Aligned_cols=140 Identities=17% Similarity=0.225 Sum_probs=79.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-----------cCcccceeEE--EEEcC--eEEEEEEcCCChhh-----
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----------HPTVGSNVEE--LVYKN--IRFEAWDVGGQERL----- 74 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----------~~~~~~~~~~--~~~~~--~~~~~~D~~g~~~~----- 74 (183)
.-.++|+++|.+|+|||||+|++++..+... .++....... +..++ .++.+|||||-.+.
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3468999999999999999999988775432 2233332222 22333 67999999993221
Q ss_pred -------------Hhh--------HHhhcc--CCCEEEEEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 75 -------------RTS--------WATYYR--GTHAVIVVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 75 -------------~~~--------~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
... ....+. .+|+++|+++.+.. .+... ...+..+ .. .+|+++|+||+|+
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l-~~----~v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL-SK----RVNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH-hc----cCCEEEEEECCCc
Confidence 000 001222 36888888887742 12222 2222222 21 4899999999998
Q ss_pred CCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 131 KDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
..........+.... .....++++|.....
T Consensus 156 l~~~e~~~~k~~i~~-~l~~~~i~~~~~~~~ 185 (276)
T cd01850 156 LTPEELKEFKQRIME-DIEEHNIKIYKFPED 185 (276)
T ss_pred CCHHHHHHHHHHHHH-HHHHcCCceECCCCC
Confidence 653333333332221 112334556666543
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-16 Score=107.74 Aligned_cols=164 Identities=18% Similarity=0.086 Sum_probs=113.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc------Cccccee--------------EEEEE------------cCeE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH------PTVGSNV--------------EELVY------------KNIR 62 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~------~~~~~~~--------------~~~~~------------~~~~ 62 (183)
+..++|.++|+...|||||..+|.+-.....+ .++..-| ..+.. --.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 67899999999999999999999764432111 0000000 00000 0257
Q ss_pred EEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh
Q 030113 63 FEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA 142 (183)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~ 142 (183)
+.|+|.|||+-....+.+...-.|++++|+++++++..-.....+..+- .. .-+.++++.||+|+...+...+--++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Ii--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-II--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hh--ccceEEEEecccceecHHHHHHHHHH
Confidence 8999999999998888887788899999999999887655655555442 11 23679999999999765433221111
Q ss_pred cCc--CccCCCceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 143 LSL--HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 143 ~~~--~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
... +..-..+.|++++||..+.||+.+++.|.+.+....
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 111 111125779999999999999999999999887543
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-16 Score=113.84 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=113.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--cc-ccCcccceeEEEEEcCeEEEEEEcCCChhh-----Hh-hHH--hhc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--VT-THPTVGSNVEELVYKNIRFEAWDVGGQERL-----RT-SWA--TYY 82 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~-~~~--~~~ 82 (183)
..+...++|+|.|++|||||++.+..... .. ..+|.+.-...+.++..+++++||||.-+. .. .+. ..+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 35678999999999999999999876543 22 335566666778888899999999993221 11 111 111
Q ss_pred c-CCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 83 R-GTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 83 ~-~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
. --.+++|++|++.-| |.......+..+... ..+.|+|+|+||+|+...+...+-.+.+-.......+++++++|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 1 125899999999665 566666666666433 25799999999999876655444443333333344568899999
Q ss_pred cccCCCHHHHHHHHHHhhhc
Q 030113 160 ALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~ 179 (183)
+.+.+|+..+....++.+..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ccchhceeeHHHHHHHHHHH
Confidence 99999998877776666544
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=103.97 Aligned_cols=116 Identities=17% Similarity=0.075 Sum_probs=60.8
Q ss_pred EEEEEEcCCChhhHhhHHhhc--------cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 62 RFEAWDVGGQERLRTSWATYY--------RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
.+.++|||||.++...+...- ...-++++++|+....+-......+..........+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 799999999988765554332 334688999998755442222222111111111136999999999999762
Q ss_pred CC--------------------HHHHHhhcCcCccCCCce-EEEEeecccCCCHHHHHHHHHHhh
Q 030113 134 MT--------------------PAEITDALSLHSIKNHDW-HIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 134 ~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
.. ...+...+.......... +++++|+.+++|+++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 111222222211122333 799999999999999999887765
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=105.97 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=69.2
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE- 138 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~- 138 (183)
+..+.++||+|....... ....+|.+++|.++..+..+..... ..+. ..-++|+||+|+.+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E------~aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME------LADLIVINKADGDNKTAARRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh------hhheEEeehhcccchhHHHHH
Confidence 568999999996533322 3567999999987544433333221 1211 12389999999875443322
Q ss_pred ---HHhhcCcCccC--CCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 139 ---ITDALSLHSIK--NHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 139 ---~~~~~~~~~~~--~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+...+...... ....+++.+|++++.|++++++.+.+++...
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 23333221101 1235799999999999999999999987643
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=100.31 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=85.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
......|+++|++|+|||||++.+.+..... .....|. +........++.++||||.. .......+.+|.+++|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEE
Confidence 3556889999999999999999997653211 1122221 11223367889999999864 22334468899999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEeCCCCCCCCC-HHHHHhhcCcCcc--CCCceEEEEeecccC
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVV-LIFANKQDLKDAMT-PAEITDALSLHSI--KNHDWHIQACSALTG 163 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~v-ilv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~S~~~~ 163 (183)
|++.+..... ..+...+.. .+.|. ++|+||+|+.+... ..++.+.+..... .....+++.+||++.
T Consensus 112 Da~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 112 DASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred ecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 9986543221 222222222 24564 55999999864322 2233333322111 124568999999886
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=115.57 Aligned_cols=141 Identities=19% Similarity=0.162 Sum_probs=90.9
Q ss_pred CCHHHHHHHhccCCccc-----ccCcccceeEEEEE----------------cCeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 28 AGKTTTLYKLHLGEVVT-----THPTVGSNVEELVY----------------KNIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 28 ~GKStl~~~l~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
++||||+.++-+..... ..+.+|........ +...+.+|||||++.+.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999997655432 22333433222221 1123899999999999888888888999
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--------------HHHHHhh-------
Q 030113 87 AVIVVIDSTDR---ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--------------PAEITDA------- 142 (183)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--------------~~~~~~~------- 142 (183)
++++|+|+++. .++..+. .+.. .++|+++++||+|+..... .+...+.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999863 3332221 1111 3589999999999864211 0111111
Q ss_pred ----cCcCcc----------CCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 143 ----LSLHSI----------KNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 143 ----~~~~~~----------~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
+..... ....++++++||++|+|++++++++...
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 111100 1246789999999999999999988644
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=104.52 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=112.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC--cccc-------------cCcccc----eeEEEEEcCeEEEEEEcCCChhhHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE--VVTT-------------HPTVGS----NVEELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~--~~~~-------------~~~~~~----~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
.-.+|+||-+...|||||+..++... |... ...-|+ ....+.|++.++.++|||||.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34689999999999999999997543 1110 112222 2344677899999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHh------hcCcCccCC
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITD------ALSLHSIKN 150 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~------~~~~~~~~~ 150 (183)
.....+.-.|++++++|+.+.. +-..+-.+...+.. +.+.|+|+||+|........-+.+ .++... ..
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d-eQ 157 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD-EQ 157 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh-hh
Confidence 9999999999999999998753 22333344444443 466789999999876543322222 222111 23
Q ss_pred CceEEEEeecccC----------CCHHHHHHHHHHhhhcc
Q 030113 151 HDWHIQACSALTG----------DGLVDGLEWISQRVTGK 180 (183)
Q Consensus 151 ~~~~~~~~S~~~~----------~gi~~~~~~i~~~~~~~ 180 (183)
.+.|++..|+..| .++.-+|+.|+++++.-
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 6778999999876 56889999999988753
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.1e-15 Score=100.57 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=99.4
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcc-------------c--ceeE-EEEE----------------
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTV-------------G--SNVE-ELVY---------------- 58 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~-------------~--~~~~-~~~~---------------- 58 (183)
....+++.-|+|+|..|+|||||+.+|...-.....+.. + +.+. .+.+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345567788999999999999999998542211111000 0 0000 0000
Q ss_pred ---------------------cCeEEEEEEcCCChhhH------hhHHhhcc--CCCEEEEEEeCCCcccHHHHHHHHHH
Q 030113 59 ---------------------KNIRFEAWDVGGQERLR------TSWATYYR--GTHAVIVVIDSTDRARISIMKDELFR 109 (183)
Q Consensus 59 ---------------------~~~~~~~~D~~g~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~ 109 (183)
......++|||||-... ..+-..+. ..-+++|++|.....+-.........
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 13468999999975421 11111122 23688899998654443333333333
Q ss_pred HhCCCCCCCCeEEEEEeCCCCCCCCCHHH-------HHhhcCcCcc----------------CCCceEEEEeecccCCCH
Q 030113 110 LLGHEDLQHSVVLIFANKQDLKDAMTPAE-------ITDALSLHSI----------------KNHDWHIQACSALTGDGL 166 (183)
Q Consensus 110 ~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-------~~~~~~~~~~----------------~~~~~~~~~~S~~~~~gi 166 (183)
..+.......|.+++.||.|+.+..-..+ +.+.+..... .+...+.+.+|+.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 33333335799999999999987533221 1122211000 024667999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030113 167 VDGLEWISQRVTG 179 (183)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (183)
+++|..+.+.+.+
T Consensus 253 ddf~~av~~~vdE 265 (366)
T KOG1532|consen 253 DDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876654
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=117.15 Aligned_cols=113 Identities=20% Similarity=0.123 Sum_probs=79.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC---------------Cccc----ccCccccee----EEEEEcCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG---------------EVVT----THPTVGSNV----EELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~---------------~~~~----~~~~~~~~~----~~~~~~~~~~~~~D~~g~ 71 (183)
.+..+|+++|+.++|||||+++++.. .+.. ...|+.... ..+.+.+.++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999642 1111 112333222 124456789999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.++......+++.+|++++|+|+.+.-.... ...+..... .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 9998888899999999999999987532221 122222222 3467889999999753
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-14 Score=99.72 Aligned_cols=134 Identities=20% Similarity=0.328 Sum_probs=101.5
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (183)
+|.|+....+..++..+.++|++||...+..|..++.+++++|+|+++++. +.+.+....+..+.++...
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 477788888889999999999999999999999999999999999999855 2455666788888888888
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHHHHHhhcC-----cCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 117 QHSVVLIFANKQDLKDA-----------------MTPAEITDALS-----LHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~~-----------------~~~~~~~~~~~-----~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
.+.++|++.||.|+..+ ...++...... ......+......+.|.+..+|+.+|+.+.
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 88999999999998632 01111111111 111111445567778999999999999988
Q ss_pred Hhhhcc
Q 030113 175 QRVTGK 180 (183)
Q Consensus 175 ~~~~~~ 180 (183)
+.+...
T Consensus 341 d~Ii~~ 346 (354)
T KOG0082|consen 341 DTIIQN 346 (354)
T ss_pred HHHHHH
Confidence 877653
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.9e-14 Score=99.10 Aligned_cols=160 Identities=19% Similarity=0.144 Sum_probs=102.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC----ccc--cc----CcccceeEEEEE---------cCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE----VVT--TH----PTVGSNVEELVY---------KNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~----~~~--~~----~~~~~~~~~~~~---------~~~~~~~~D~~g~~~~ 74 (183)
+...+++.++|+..+|||||.+++..-. |.. .+ .|.+.-+-.+.. +..++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 3455999999999999999999995421 111 11 111111111211 3568899999999998
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccH-HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc------Cc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARI-SIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL------HS 147 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~------~~ 147 (183)
-+.+.....-.|..++|+|+..+..- ..-...+-.++ -...++|+||.|+..+.++..-.+.... ..
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 88777777778999999999865321 11112222222 2456889999998766443322221111 11
Q ss_pred c-CCCceEEEEeecccC----CCHHHHHHHHHHhhhc
Q 030113 148 I-KNHDWHIQACSALTG----DGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~-~~~~~~~~~~S~~~~----~gi~~~~~~i~~~~~~ 179 (183)
. ...+.|+.++|+.+| +++.|+.+.+-+++.+
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 1 124689999999999 8888888888777654
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=100.20 Aligned_cols=111 Identities=24% Similarity=0.305 Sum_probs=85.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc--CCcc-----------------------cccCcccceeEEEEEcCeEEEEEEcCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL--GEVV-----------------------TTHPTVGSNVEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~--~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g 70 (183)
++...+||-+|.+|||||..+++- +... +...++.....++.|++..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678999999999999998841 1110 112344466678889999999999999
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
|++|...+..-+.-+|.++.|+|+..+ .+.-...+..+... ++.|++-++||+|..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDRE 146 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccc
Confidence 999988887778889999999999866 44444555565544 689999999999975
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=95.19 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=75.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhH----------hhHH
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLR----------TSWA 79 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~ 79 (183)
....++|+++|.+|+|||||+|++.+....... .|..........++.++.+|||||-.... ....
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 356799999999999999999999987653322 23333333444567899999999944331 1122
Q ss_pred hhcc--CCCEEEEEEeCCCcc-cHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 80 TYYR--GTHAVIVVIDSTDRA-RIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 80 ~~~~--~~d~ii~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
.+++ ..|++++|..++... ... .+...+...+... ...++++|.||+|...+
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 3343 568888887665321 122 2334444443321 23579999999997643
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=100.24 Aligned_cols=154 Identities=18% Similarity=0.082 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.|+..|+--.|||||+..+.+..... ...|+...+.....++..+.|+|+||++++-..+...+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46788999999999999998866432 335555656656667779999999999999999888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|+++. +.........++... .....++|+||+|..++....+..+....... ....+++.+|+++|.||+++.+.
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 99654 222222222222222 22456999999999876544444443322221 55667999999999999999999
Q ss_pred HHHhh
Q 030113 173 ISQRV 177 (183)
Q Consensus 173 i~~~~ 177 (183)
|.+..
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 99877
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=96.09 Aligned_cols=147 Identities=22% Similarity=0.229 Sum_probs=100.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc------------------------------------cccCcccceeEEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV------------------------------------TTHPTVGSNVEELVY 58 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~------------------------------------~~~~~~~~~~~~~~~ 58 (183)
+..++++-+|...-|||||+-+|+.+... +...|+.+.+.-+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 56689999999999999999999643211 112344455555666
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHH--HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKD--ELFRLLGHEDLQHSVVLIFANKQDLKDAMTP 136 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~ 136 (183)
+..+|.+-|||||++|.+.+......||++|+++|+...- ++..+. .+..++.. ..+++.+||+||.+..+.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLGI-----rhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLGI-----RHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhCC-----cEEEEEEeeecccccCHH
Confidence 7899999999999999999999999999999999996541 222222 22233322 568999999999875432
Q ss_pred --HHHHhhcCc--CccCCCceEEEEeecccCCCHH
Q 030113 137 --AEITDALSL--HSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 137 --~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
.++...+.. .........++++||..|+|+-
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 122211111 1112234479999999999974
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=95.66 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHH----hh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWA----TY 81 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~----~~ 81 (183)
++|+++|.+|+||||++|.+++...... +.|..+........+..+.++||||-.+ ....+. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999998875432 2355566666778899999999999221 111122 22
Q ss_pred ccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHh-----hcCcCccCCCceEE
Q 030113 82 YRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITD-----ALSLHSIKNHDWHI 155 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~ 155 (183)
....|++++|++...... -.....++..++... ....++|+.|..|........+..+ .+.....+. +-+|
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c-~~R~ 157 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC-GGRY 157 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT-TTCE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc-CCEE
Confidence 356799999999973321 223334555555432 2245888888888655443222211 111111111 2235
Q ss_pred EEeecc------cCCCHHHHHHHHHHhhhcc
Q 030113 156 QACSAL------TGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 156 ~~~S~~------~~~gi~~~~~~i~~~~~~~ 180 (183)
...+.+ +...+.++++.+-+.+.++
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 444444 3455788888777766554
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-13 Score=90.70 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=63.0
Q ss_pred eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHH
Q 030113 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAE 138 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~ 138 (183)
....++++.|..-.....+. -+|.++.|+|+.+..+.. ......+. .--++++||+|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~---~~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIP---RKGGPGIT------RSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhh---hhhHhHhh------hccEEEEEhhhccccccccHHH
Confidence 45667777773211111111 157899999998764421 11111111 112899999999753 23333
Q ss_pred HHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+.+.+... +...+++++|+++|+|++++++++.+.+.
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 33333322 34678999999999999999999987653
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-14 Score=114.16 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=80.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc------------c-------ccCcccceeEEEEE----------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV------------T-------THPTVGSNVEELVY---------------- 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~------------~-------~~~~~~~~~~~~~~---------------- 58 (183)
+.+-.+|+|+|+.++|||||+++++...-. . ...|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 456689999999999999999999643310 0 01122222222222
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.+..+.++||||+.+|.......++.+|++|+|+|+.++-... ....|..... .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence 2567899999999999999999999999999999998764322 2233333332 468999999999986
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=101.87 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=101.3
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcc----------------------------------cccCcccceeEEEE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------------------------------TTHPTVGSNVEELV 57 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~ 57 (183)
..++..+.++++|+..+|||||+.+++..--. ..+-|..+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34556799999999999999999888531100 01112222233344
Q ss_pred EcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHH------HHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 58 YKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISI------MKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
-....+.++|+||+..|...+......+|+.++|+|++..+ |+. .......++... .-..+++++||+|+.
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLV 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHc--CcceEEEEeeccccc
Confidence 46788999999999999998888899999999999998542 221 112222222221 135689999999987
Q ss_pred CCCC--HHH----HHhhc-CcCccCCCceEEEEeecccCCCHH
Q 030113 132 DAMT--PAE----ITDAL-SLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 132 ~~~~--~~~----~~~~~-~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
...+ .++ +...+ ....+....+.|++||+..|+|+-
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 6432 222 33333 334445567789999999999963
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=92.36 Aligned_cols=162 Identities=19% Similarity=0.261 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC----CcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhh---HHhhccCCCEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG----EVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS---WATYYRGTHAVIV 90 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~d~ii~ 90 (183)
.+|+++|...+||||+......+ +..-..+|.......+...-+++++||.|||-.+... ....++++.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 66999999999999997655432 2111223444444444445689999999998776432 3456889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHh--CCCCCCCCeEEEEEeCCCCCCC-CCH-------HHHHhhcCcCccCCCceEEEEeec
Q 030113 91 VIDSTDRARISIMKDELFRLL--GHEDLQHSVVLIFANKQDLKDA-MTP-------AEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~~vilv~nK~Dl~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
|+|+.+. +.+....+.... .+.-.+++.+-+.+.|.|...+ ... +...+.+.......-.+.++-+|.
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999765 222222222222 2344578999999999995433 221 122233333333445677888888
Q ss_pred ccCCCHHHHHHHHHHhhhccCC
Q 030113 161 LTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
.+.. |-|+|..+++.+.++.|
T Consensus 186 yDHS-IfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 YDHS-IFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cchH-HHHHHHHHHHHHhhhch
Confidence 8876 99999999999998876
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.3e-14 Score=111.77 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=78.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-------------------ccCcccceeEEEEEc----------CeEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-------------------THPTVGSNVEELVYK----------NIRFE 64 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-------------------~~~~~~~~~~~~~~~----------~~~~~ 64 (183)
..+..+|+|+|+.++|||||+++|+...-.. ...|+......+.+. +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 3455799999999999999999997532110 001111111122332 56799
Q ss_pred EEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
++||||+.++.......++.+|++++|+|+.++-... ....|..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999999988899999999999999998763222 2233333332 358999999999986
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-14 Score=108.21 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=106.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc-----cccCcccceeEEEE----------------EcCeEEEEEEcCCChh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV-----TTHPTVGSNVEELV----------------YKNIRFEAWDVGGQER 73 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 73 (183)
-+.+-+||+|+..+|||-|+..+-+.+.. .....+|.++.... ++--.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 36688999999999999999998664432 22344444443322 2234678999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcc---cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC------C---------
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM------T--------- 135 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~------~--------- 135 (183)
|..+.......||.+|+|+|+..+- +...+ +....++.|+||..||+|..... .
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi--------~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI--------NLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHH--------HHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 9999999999999999999998652 22221 11122579999999999954210 0
Q ss_pred ---HHHHHhh-------cCcCc------cC----CCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 136 ---PAEITDA-------LSLHS------IK----NHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 136 ---~~~~~~~-------~~~~~------~~----~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
..++... ++... .+ ...+.++++||..|+||..|+-+|++..+.
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 0111111 11000 01 245678999999999999999999886553
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=92.81 Aligned_cols=116 Identities=9% Similarity=0.115 Sum_probs=72.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChhhHh-------hHHhhc-
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQERLRT-------SWATYY- 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~- 82 (183)
...++|+++|.+|+||||++|+|++......+. +...........+.++.++||||..+... ....++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 477999999999999999999999876432211 12222233445788999999999554321 122222
Q ss_pred -cCCCEEEEEEeCCC--cccH-HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 83 -RGTHAVIVVIDSTD--RARI-SIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 83 -~~~d~ii~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...|+++||..++. .... ..+...+...+... ...+++++.|+.|..+
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 25899999965542 2212 22333344433221 2357899999999653
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=110.00 Aligned_cols=112 Identities=21% Similarity=0.170 Sum_probs=76.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-------------------ccCcccceeEEEEE----cCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-------------------THPTVGSNVEELVY----KNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-------------------~~~~~~~~~~~~~~----~~~~~~~~D~~g~ 71 (183)
.+..+|+++|+.++|||||+.+++...-.. ...|+......+.+ ++..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 455689999999999999999996422100 00122222222222 4678999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.++.......++.+|++++|+|+..+-.. .....+...... +.|.++++||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE----RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc----CCCeEEEEECchhh
Confidence 99988889999999999999999865322 122333332222 46779999999975
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=92.12 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=107.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC----cccccCcccceeEEEEE-cCeEEEEEEcCCChhhHh-----hHHhhccCCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE----VVTTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRT-----SWATYYRGTH 86 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d 86 (183)
.-||+++|.+|+||||+-..+..+. ......|+++....+.+ +...+.+||++||+.+.. .....+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4589999999999999976665433 22345666666666655 458899999999986432 3345678899
Q ss_pred EEEEEEeCCCccc---HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc---CccCCCceEEEEeec
Q 030113 87 AVIVVIDSTDRAR---ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL---HSIKNHDWHIQACSA 160 (183)
Q Consensus 87 ~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~S~ 160 (183)
++++|+|++..+- +......+..++++. +...+.+..+|+|+........+.+.... .......+.++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999986542 344555666666553 67888999999999765544433322211 111123456888886
Q ss_pred ccCCCHHHHHHHHHHhhhccC
Q 030113 161 LTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.+. .+-.+|..++..+.+..
T Consensus 162 wDe-tl~KAWS~iv~~lipn~ 181 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIVYNLIPNV 181 (295)
T ss_pred hhH-HHHHHHHHHHHhhCCCh
Confidence 654 36677777777665543
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=94.83 Aligned_cols=82 Identities=26% Similarity=0.377 Sum_probs=57.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEc-----------------CeEEEEEEcCCCh-
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYK-----------------NIRFEAWDVGGQE- 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~~- 72 (183)
....++|+|+|.||+|||||+|++.+..... ...|...+...+.+. ..+++++|+||-.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 3566899999999999999999997765321 223334444344332 3458999999932
Q ss_pred ------hhHhhHHhhccCCCEEEEEEeCC
Q 030113 73 ------RLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 73 ------~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
.........++++|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23334455678899999999984
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=99.36 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=81.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC--CcccccC--cccceeEE--EEE-cCeEEEEEEcCCChhhHhhHHhh-----c
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG--EVVTTHP--TVGSNVEE--LVY-KNIRFEAWDVGGQERLRTSWATY-----Y 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~--~~~~~~~--~~~~~~~~--~~~-~~~~~~~~D~~g~~~~~~~~~~~-----~ 82 (183)
...++|+|+|.+|+|||||+|++.|- +.....+ ...++... +.. +.-++.+||.||..........| +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46789999999999999999999652 2111111 11222222 222 23579999999954333333333 4
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC--C-----C--CCH----HH----HHhhcCc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK--D-----A--MTP----AE----ITDALSL 145 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~--~-----~--~~~----~~----~~~~~~~ 145 (183)
...|.+|++.+ +.|....-++...+.. .++|+.+|-+|+|.. . + ... ++ +.+.+..
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 56798888775 4455555555555444 468999999999951 1 1 111 11 2222222
Q ss_pred CccCCCceEEEEeecccC--CCHHHHHHHHHHhhhcc
Q 030113 146 HSIKNHDWHIQACSALTG--DGLVDGLEWISQRVTGK 180 (183)
Q Consensus 146 ~~~~~~~~~~~~~S~~~~--~gi~~~~~~i~~~~~~~ 180 (183)
. .....++|-+|+.+- .++..+.+.+.+.+...
T Consensus 186 ~--gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 186 A--GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp T--T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred c--CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 1 224457899998774 55888888888777654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-12 Score=89.60 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=109.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCC----CE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGT----HA 87 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~----d~ 87 (183)
..-+|+|+|+.++|||||+.++.+.+......-.+..+..+.. +..++.+|-.-|+.-...+....+... -.
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 4478999999999999999999988755555544444433322 236788888888777666666555433 47
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhC-------------------------------------------------------
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLG------------------------------------------------------- 112 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~------------------------------------------------------- 112 (183)
+|++.|.++++.+-...+.|..++.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 8889999999543322222222211
Q ss_pred ------CCCCCCCeEEEEEeCCCCCC----C-CCHHH---HHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 113 ------HEDLQHSVVLIFANKQDLKD----A-MTPAE---ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 113 ------~~~~~~~~vilv~nK~Dl~~----~-~~~~~---~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
...+.++|+++|++|+|... + +-..+ +.+..-+.++...+..++.+|+++..|++-+...|++.+.
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 01123589999999999732 1 11111 1122223334456778999999999999999999999876
Q ss_pred cc
Q 030113 179 GK 180 (183)
Q Consensus 179 ~~ 180 (183)
.-
T Consensus 291 G~ 292 (473)
T KOG3905|consen 291 GF 292 (473)
T ss_pred Cc
Confidence 54
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=92.13 Aligned_cols=107 Identities=14% Similarity=0.023 Sum_probs=65.5
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHH
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEI 139 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~ 139 (183)
+..+.++||+|-.... ......+|.++++.+.... +++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5789999999854222 2345668888888655433 2232222222 24677999999998754332211
Q ss_pred Hhh----cCcCcc--CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 140 TDA----LSLHSI--KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 140 ~~~----~~~~~~--~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
... +..... .....+++++|++++.|++++++++.+.+.
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 111 111000 112246999999999999999999988643
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=89.40 Aligned_cols=152 Identities=20% Similarity=0.161 Sum_probs=85.6
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCCcc--c-------cc--------CcccceeEEE-----------------
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV--T-------TH--------PTVGSNVEEL----------------- 56 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~--~-------~~--------~~~~~~~~~~----------------- 56 (183)
...+.....|+++|+.|+|||||+++++..... . .. ...+.....+
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHH
Confidence 345567889999999999999999998643100 0 00 0000010000
Q ss_pred ---EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 57 ---VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 57 ---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
...+..+.+++|.|.-.... .+....+..+.|+|+.+.... ... ... ....|.++++||+|+.+.
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~--~~~-~~~------~~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDK--PLK-YPG------MFKEADLIVINKADLAEA 163 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccch--hhh-hHh------HHhhCCEEEEEHHHcccc
Confidence 00134666777776211110 111223555667777654321 000 111 123567999999999753
Q ss_pred CC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 134 MT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
.. ..+..+.+.. ..+..+++++|++++.|++++++++.+..
T Consensus 164 ~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 164 VGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred chhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 22 2233333322 12456899999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=89.85 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=90.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC------Cc-----ccccC------------------cccceeEEEEE-------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG------EV-----VTTHP------------------TVGSNVEELVY------- 58 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~------~~-----~~~~~------------------~~~~~~~~~~~------- 58 (183)
.+.+.|.|.|+||+|||||++++... .. .++++ ..++.+..+..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 47899999999999999999988421 10 11111 12222232222
Q ss_pred -------------cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q 030113 59 -------------KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA 125 (183)
Q Consensus 59 -------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~ 125 (183)
.+..+.++.|.|--+... ....-+|.+++|.-+.-.+..+.+..-+.++.. ++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEE
Confidence 156889999987332222 224568999999999877666666666666532 8999
Q ss_pred eCCCCCCCC-CHHHHHhhcCcCc--cCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 126 NKQDLKDAM-TPAEITDALSLHS--IKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 126 nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
||.|..... ...++...+.... ......|++.+||.++.|++++++.|.++.
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999953221 1233344333221 223456899999999999999999988754
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-12 Score=88.23 Aligned_cols=161 Identities=18% Similarity=0.168 Sum_probs=107.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC-------Ccc------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG-------EVV------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.+..++|..+|+...|||||..++... ... ....|+......+......+..+|+||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 367899999999999999998877421 110 1123444444555667899999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCC-eEEEEEeCCCCCCCCCHH-----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS-VVLIFANKQDLKDAMTPA-----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~vilv~nK~Dl~~~~~~~-----~~~~~~~~~~~ 148 (183)
-..+.....+.|+.|+|+.+++.-. -..+..+.-..+ .+. .++++.||+|+.++.... ++.+.+....+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 8888888889999999999987632 122222222211 234 467778999998754332 34445555555
Q ss_pred CCCceEEEEeecccC--------CCHHHHHHHHHHhhhc
Q 030113 149 KNHDWHIQACSALTG--------DGLVDGLEWISQRVTG 179 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~--------~gi~~~~~~i~~~~~~ 179 (183)
.....|++.-|+..- ..|.+|++++.+.+..
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 556778888887652 2256777776666543
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-12 Score=93.77 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=106.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCC----C
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGT----H 86 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~----d 86 (183)
...-.|+|+|..++|||||+.+|.+.+........+..+..+.- ...++.+|-..|...+..+....+... -
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 34578999999999999999999876543332223333333222 125789999888777777776655432 5
Q ss_pred EEEEEEeCCCcccHH-HHHHHHHHH----------------------------hC----C--------------------
Q 030113 87 AVIVVIDSTDRARIS-IMKDELFRL----------------------------LG----H-------------------- 113 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~-~~~~~~~~~----------------------------~~----~-------------------- 113 (183)
.+++|+|.+.|+.+- .+..|+..+ .. .
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 788999999996533 222211111 00 0
Q ss_pred ---------CCCCCCeEEEEEeCCCCCCCC----C-HH---HHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 114 ---------EDLQHSVVLIFANKQDLKDAM----T-PA---EITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 114 ---------~~~~~~~vilv~nK~Dl~~~~----~-~~---~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
....++|++||++|+|..... . .+ ++.+..-+..+...++.++.||++...+++.+...|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 001138999999999964211 0 01 122222233334467789999999999999999999998
Q ss_pred hhccC
Q 030113 177 VTGKA 181 (183)
Q Consensus 177 ~~~~~ 181 (183)
+...+
T Consensus 263 l~~~~ 267 (472)
T PF05783_consen 263 LYGFP 267 (472)
T ss_pred hccCC
Confidence 87654
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=83.89 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=52.8
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhcCcCccCCCceEEEEeecccC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--AEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
+.-|+|+|++.++- .... .+.... .--++|+||.|+.+.... +.+.+.... -++..+++++|.++|
T Consensus 119 ~~~v~VidvteGe~---~P~K-----~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~ktg 186 (202)
T COG0378 119 HLRVVVIDVTEGED---IPRK-----GGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKTG 186 (202)
T ss_pred ceEEEEEECCCCCC---Cccc-----CCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCCC
Confidence 48899999987631 1111 011111 234899999999876543 333322221 346778999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
+|++++++|+....
T Consensus 187 ~G~~~~~~~i~~~~ 200 (202)
T COG0378 187 EGLDEWLRFIEPQA 200 (202)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999997754
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-11 Score=84.99 Aligned_cols=154 Identities=20% Similarity=0.184 Sum_probs=98.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc-----------ccccC------------------cccceeEEEEE------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV-----------VTTHP------------------TVGSNVEELVY------ 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~-----------~~~~~------------------~~~~~~~~~~~------ 58 (183)
..+...|.|.|.||+|||||+.+|...-. .++++ ..+..+..+..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 35778999999999999999998842110 11111 11111111111
Q ss_pred --------------cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q 030113 59 --------------KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124 (183)
Q Consensus 59 --------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv 124 (183)
.+..+.++.|.|--+... ...+-+|.+++|.=+--.+..+.+..-+.++.. ++|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~v 195 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIV 195 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eee
Confidence 156889999987433222 223458999999888777777777666666533 899
Q ss_pred EeCCCCCCCC-CHHHHHhhcCcCc----cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 125 ANKQDLKDAM-TPAEITDALSLHS----IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 125 ~nK~Dl~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+||.|..... ...++...+.... ......|++.+||.+|+|++++|+.+.++...
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 9999964321 1233333333221 12356689999999999999999999887653
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=9e-12 Score=90.46 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcC-----------------eEEEEEEcCCCh-----
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKN-----------------IRFEAWDVGGQE----- 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~----- 72 (183)
++|+++|.||+|||||+|++.+..... ...|...+...+...+ ..+.++|+||-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999998876311 2233344433333322 358999999932
Q ss_pred --hhHhhHHhhccCCCEEEEEEeCC
Q 030113 73 --RLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 73 --~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
.........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 22334455678999999999984
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=100.61 Aligned_cols=115 Identities=21% Similarity=0.164 Sum_probs=85.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--------------c-------cccCcccceeEEEEEcC-eEEEEEEcCCC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--------------V-------TTHPTVGSNVEELVYKN-IRFEAWDVGGQ 71 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--------------~-------~~~~~~~~~~~~~~~~~-~~~~~~D~~g~ 71 (183)
..+..+|.|+||..+||||+..+++...- . +...|+......+.+++ ..++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 56778999999999999999999853210 0 01123444445667775 99999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
-+|.......++-+|++++|+|+...-.... ...|..... .++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh----cCCCeEEEEECcccccc
Confidence 9999999999999999999999987632222 233333333 46999999999997543
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-13 Score=82.55 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc--CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
+|++++|+.|+|||+|+.++....+.... ++.+ +......+.+.++.++.||+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 48999999999999999999776664322 2222 2333345577889999999999
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
...++... |...+... ...+.|.++++||.|+.+... +.... ...++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~---~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQ---VATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCc---CCHHH--------HHHHHHHhCCCcchhh
Confidence 98887654 54444332 335688999999999743221 11111 1137788999999885
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=82.63 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=43.2
Q ss_pred eEEEEEEcCCChh----hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 61 IRFEAWDVGGQER----LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 61 ~~~~~~D~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
..+.++||||-.. ....+..++..+|++|+|.+++...+-... ..+...... ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 3689999999532 235678888999999999999986544433 333333333 234489999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=86.50 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=39.9
Q ss_pred CeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 119 SVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 119 ~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
..-++|+||+|+.+.. ....+.+.+. ...+..+++++|+++|+|++++.+||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr---~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAR---EVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHH---hhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5569999999997532 2222333322 22456789999999999999999999874
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.3e-12 Score=92.62 Aligned_cols=130 Identities=17% Similarity=0.264 Sum_probs=95.3
Q ss_pred cccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCC
Q 030113 48 TVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 48 ~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (183)
|.|+....+.+ .+..+.++|++|+...+..|..++.+.+++|||+++++. .++.+....+..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 66666677788 889999999999999999999999999999999998743 3477777888888887777
Q ss_pred CCCeEEEEEeCCCCCC-----C---------------CCHHHHHhhcC----cCccCC---CceEEEEeecccCCCHHHH
Q 030113 117 QHSVVLIFANKQDLKD-----A---------------MTPAEITDALS----LHSIKN---HDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~-----~---------------~~~~~~~~~~~----~~~~~~---~~~~~~~~S~~~~~gi~~~ 169 (183)
.+.|++|+.||.|+.. . .........+. ...... ..+.+..++|.+.++++.+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 7899999999999632 1 11122222111 111111 5556778999999999999
Q ss_pred HHHHHHhh
Q 030113 170 LEWISQRV 177 (183)
Q Consensus 170 ~~~i~~~~ 177 (183)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 99887643
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=89.90 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=71.7
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-HHHhhcCcCccC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-EITDALSLHSIK 149 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 149 (183)
+++..+...+++++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+||.+..... +..+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 555666677899999999999999887 88888888875532 468999999999996532221 111222 1
Q ss_pred CCceEEEEeecccCCCHHHHHHHHHH
Q 030113 150 NHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
..+++++++||+++.|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 24567999999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=85.89 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccccc-----------CcccceeEEEEE--c--CeEEEEEEcCCCh---------
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-----------PTVGSNVEELVY--K--NIRFEAWDVGGQE--------- 72 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~-----------~~~~~~~~~~~~--~--~~~~~~~D~~g~~--------- 72 (183)
.++|+|+|.+|+|||||+|.|++....... .+..+....... . .+++.++||||-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999886543221 122222222222 2 3688999999821
Q ss_pred ---------hhHhhHHhh-------c--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC
Q 030113 73 ---------RLRTSWATY-------Y--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134 (183)
Q Consensus 73 ---------~~~~~~~~~-------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~ 134 (183)
++......- + ...|+++|+++++.. .+..+.-..+..+.. .+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLSK----RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhcc----cccEEeEEecccccCHH
Confidence 111111000 0 124899999998753 233344344444443 48899999999986544
Q ss_pred CHHHHHh
Q 030113 135 TPAEITD 141 (183)
Q Consensus 135 ~~~~~~~ 141 (183)
....+++
T Consensus 159 el~~~k~ 165 (281)
T PF00735_consen 159 ELQAFKQ 165 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4333333
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-12 Score=90.96 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=110.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccccc------Ccccce-------------------eEEEE----------
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH------PTVGSN-------------------VEELV---------- 57 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~------~~~~~~-------------------~~~~~---------- 57 (183)
.++..++|.-+|+...||||++.++.+-...... .|+..- |..+.
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 3467899999999999999999998764422100 011000 00000
Q ss_pred -------E-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 58 -------Y-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 58 -------~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
+ --.++.|+|+||++-....+.+...-.|++++++..++++..-.....+..+-- ..-+.++++.||+|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---M~LkhiiilQNKiD 190 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---MKLKHIIILQNKID 190 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---hhhceEEEEechhh
Confidence 0 014789999999998877777766677999999999877654333333333211 12256899999999
Q ss_pred CCCCCCHHHHHhhcCc--CccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 130 LKDAMTPAEITDALSL--HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 130 l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+..+....+.-+..+. ......+.|++++||.-..|++-+.+.|++.++.-
T Consensus 191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 9876655444333332 11223677999999999999999999999988643
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-10 Score=78.40 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=43.6
Q ss_pred eEEEEEEcCCChh-------------hHhhHHhhccCC-CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q 030113 61 IRFEAWDVGGQER-------------LRTSWATYYRGT-HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126 (183)
Q Consensus 61 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~n 126 (183)
.++.++|+||-.. ...+...|+++. +.+++|+|++..-.-..... +.+. ....+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~---ld~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKE---VDPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHH---HHHcCCcEEEEEE
Confidence 5899999999531 234566777744 68899998865322111111 1111 1224689999999
Q ss_pred CCCCCCCC
Q 030113 127 KQDLKDAM 134 (183)
Q Consensus 127 K~Dl~~~~ 134 (183)
|.|..+..
T Consensus 201 K~D~~~~~ 208 (240)
T smart00053 201 KLDLMDEG 208 (240)
T ss_pred CCCCCCcc
Confidence 99987543
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.2e-11 Score=79.84 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=61.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc--c-ccCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV--T-THPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGT 85 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 85 (183)
-.-+|+++|.|.+|||||+..+....-. . ...|..+-...+.+++..+++.|.||.-. ..++..+..+.+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 4589999999999999999999654321 1 22444444556778999999999999322 234555667889
Q ss_pred CEEEEEEeCCCc
Q 030113 86 HAVIVVIDSTDR 97 (183)
Q Consensus 86 d~ii~v~d~~~~ 97 (183)
|.++.|.|++..
T Consensus 141 DlilMvLDatk~ 152 (364)
T KOG1486|consen 141 DLILMVLDATKS 152 (364)
T ss_pred cEEEEEecCCcc
Confidence 999999999876
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=88.86 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhh----------HhhHHhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERL----------RTSWATY 81 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~ 81 (183)
..++|+++|.+|+||||++|.|++....... .|...........+..+.++||||-... ...+..+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 4578999999999999999999987643222 2222222223346789999999994321 1122233
Q ss_pred cc--CCCEEEEEEeCCCcccH-H--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 82 YR--GTHAVIVVIDSTDRARI-S--IMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 82 ~~--~~d~ii~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+. .+|++|+|..+...... . .....+..++... ....+|||.|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 34 47999999887533221 1 2334444444422 2356899999999765
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-11 Score=92.83 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=80.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccC----------------cccceeE----E-----EEEcCeEEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----------------TVGSNVE----E-----LVYKNIRFEAWDV 68 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----------------~~~~~~~----~-----~~~~~~~~~~~D~ 68 (183)
+....+++++|+-.+|||+|+..|.....+.... ..|+.+. + ...++.-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 4566899999999999999999987654332111 1111111 1 1124567899999
Q ss_pred CCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
||+-.|.+.+-..++.+|++++|+|+.++-.+..- ..+....+ .+.|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHh----ccCcEEEEEehhHH
Confidence 99999999999999999999999999887554332 22333322 46899999999995
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=83.22 Aligned_cols=160 Identities=16% Similarity=0.084 Sum_probs=99.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-----------------ccCcccceeEEEEE------------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-----------------THPTVGSNVEELVY------------------ 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-----------------~~~~~~~~~~~~~~------------------ 58 (183)
.+..+.+.++|+.+.|||||+-.|..+.... ...+....+.-+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4577999999999999999998885443221 11122222211111
Q ss_pred -----cCeEEEEEEcCCChhhHhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 59 -----KNIRFEAWDVGGQERLRTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.+.-+.++||.|++.+.+.....+ ++.|..++++.+++.-+ ... .+.+........|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~t---kEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMT---KEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhh---hHhhhhhhhhcCCEEEEEEecccC
Confidence 134689999999999876654443 57899999999987732 111 122222223469999999999998
Q ss_pred CCCCHHHHHhh----cCc--------------------CccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 132 DAMTPAEITDA----LSL--------------------HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 132 ~~~~~~~~~~~----~~~--------------------~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++...+.+.+. +.. ......-+|+|.+|+.+|+|++-+.+.+ ..++.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f-~~Lp~ 339 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF-LLLPK 339 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH-HhCCc
Confidence 76443322211 110 0111235799999999999997665544 34443
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-10 Score=81.55 Aligned_cols=81 Identities=28% Similarity=0.326 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcc-cc--cCcccceeEEEEE------------------cCeEEEEEEcCC-----
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVV-TT--HPTVGSNVEELVY------------------KNIRFEAWDVGG----- 70 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~-~~--~~~~~~~~~~~~~------------------~~~~~~~~D~~g----- 70 (183)
.++++|+|.||+|||||+|++...... .. ..|+..+...+.. ....++++|++|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999765521 11 2333333322221 245789999998
Q ss_pred --ChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 71 --QERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 71 --~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
.+.+.......++++|+++.|+|..+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 345667777888999999999999743
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-10 Score=83.37 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=98.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccccc-----CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-----PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.++.+++.|+|+.++|||.+++.+.+..+.... +...++...+......+.+-|.+-. ........- ..||.+
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 356699999999999999999999997765411 1122222333334455566666543 211111121 668999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-----CHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-----TPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
.++||.+++.+|......+...... ...|+++|.+|+|+.+.. +..++...++.. +-...|.+..
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~~~ 569 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSKTL 569 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccCCC
Confidence 9999999999998888777776443 679999999999986532 233444444322 2344555532
Q ss_pred CCHHHHHHHHHHhhh
Q 030113 164 DGLVDGLEWISQRVT 178 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~ 178 (183)
.. .++|..|+....
T Consensus 570 ~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 570 SS-NELFIKLATMAQ 583 (625)
T ss_pred CC-chHHHHHHHhhh
Confidence 22 788888877654
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-10 Score=81.35 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=85.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC----Ccc-----------cccC-------ccccee---EEEEE-----cCeEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG----EVV-----------TTHP-------TVGSNV---EELVY-----KNIRFE 64 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~----~~~-----------~~~~-------~~~~~~---~~~~~-----~~~~~~ 64 (183)
.-++.|+|+|+.++|||||++++.+. +.. -.++ |....+ ..+.. -..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45689999999999999999999876 222 1112 222222 22222 237899
Q ss_pred EEEcCCC--------hhhHh---------------------hHHhhcc-CCCEEEEEE-eCC----CcccHHHHHHHHHH
Q 030113 65 AWDVGGQ--------ERLRT---------------------SWATYYR-GTHAVIVVI-DST----DRARISIMKDELFR 109 (183)
Q Consensus 65 ~~D~~g~--------~~~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~~~~~~~~~~ 109 (183)
++||+|- .+... -+...++ .++..++|. |.+ .++.+......+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999981 11111 1334455 789999988 775 11223333332222
Q ss_pred HhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc--CCCHHHHHHHHHH
Q 030113 110 LLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT--GDGLVDGLEWISQ 175 (183)
Q Consensus 110 ~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~gi~~~~~~i~~ 175 (183)
.+.. .++|++++.||.|-..+. ..++.+.+.. ..+++++.+|+.. -+.|..+++.+..
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~e----ky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHPE-TEALRQELEE----KYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCch-hHHHHHHHHH----HhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 2222 479999999999933222 2222322221 1234566766554 3446666655543
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-11 Score=82.63 Aligned_cols=76 Identities=26% Similarity=0.285 Sum_probs=52.7
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcC-----------------eEEEEEEcCCCh-------
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKN-----------------IRFEAWDVGGQE------- 72 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~------- 72 (183)
|+++|.||+|||||+|++.+..... ...|.......+.+.+ ..++++|+||-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999998876421 2234344444444332 259999999932
Q ss_pred hhHhhHHhhccCCCEEEEEEeCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
.........++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 23334455678899999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=81.92 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=95.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEE-cCeEEEEEEcCCC---------hhhHhhHHh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVY-KNIRFEAWDVGGQ---------ERLRTSWAT 80 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~ 80 (183)
.....-|.|+|.+|+|||||++++.+..... ...|...+...... .+..+.+.||.|- +.|+.. ..
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~AT-Le 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQAT-LE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHH-HH
Confidence 3456789999999999999999998544321 23455555544444 3456788899982 223332 23
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCC----CeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEE
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQH----SVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~----~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
....+|.++.|.|++.|..-......+.-+ +....+. ..++=|=||.|..+..... ..+ ..+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------E~n-~~v 319 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------EKN-LDV 319 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccccccccCcc------------ccC-Ccc
Confidence 356789999999999997544443333333 2222222 2345566777764331110 011 168
Q ss_pred EeecccCCCHHHHHHHHHHhhh
Q 030113 157 ACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.+|+.+|+|++++++.+-..+.
T Consensus 320 ~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccccCccHHHHHHHHHHHhh
Confidence 8999999999999988766543
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-10 Score=80.15 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=105.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc-------CCccc------------ccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL-------GEVVT------------THPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~-------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
++..++|.-||+...|||||..++.. ..+.. ...|+......+.....++.-.|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 45779999999999999999877732 11111 112333333334445678889999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-----HHHhhcCcCccC
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-----EITDALSLHSIK 149 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~ 149 (183)
-..+.....+.|+.|+|+.++|.. +...+..+.-..+. .-..+++.+||.|+.++.... ++.+.+....+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 888888888899999999999874 33334444333332 125688899999998543322 334445555556
Q ss_pred CCceEEEEeecc---cCCC-------HHHHHHHHHHhh
Q 030113 150 NHDWHIQACSAL---TGDG-------LVDGLEWISQRV 177 (183)
Q Consensus 150 ~~~~~~~~~S~~---~~~g-------i~~~~~~i~~~~ 177 (183)
..+.|++.-||. +|.+ |.++++.+-+.+
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 678889888765 3422 555666555544
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=78.03 Aligned_cols=98 Identities=17% Similarity=0.092 Sum_probs=64.1
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-HHHhhc---CcCccC
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-EITDAL---SLHSIK 149 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~~~~~~---~~~~~~ 149 (183)
+...+..+++++|++++|+|++++..- ....+ ... ..+.|+++|+||+|+.+..... ...... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS--LIPRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc--cchhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577888899999999999999876311 11111 111 1458999999999986443322 222221 001111
Q ss_pred CCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 150 NHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
....+++++||+++.|++++++++.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11235899999999999999999988764
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-10 Score=74.90 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=42.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g 70 (183)
...++++++|.+|+|||||+|++.+......++..|++.....+ -+..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcC
Confidence 34589999999999999999999988766656555554432222 234789999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-10 Score=73.41 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=42.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEc-CeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYK-NIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g 70 (183)
.+..+++++|.+|+|||||+|++.+......+++.|.+.....+. +..+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 356889999999999999999999887766666666554433322 24588999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=75.23 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=87.0
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+..+.+++.++|++||.+.+..|...+++..++|+|+..+.. ..+.+....+..+.+..-..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 33344444555678999999999999999999999999999999988744 22444444555555544445
Q ss_pred CCeEEEEEeCCCCCCC------------------------------CCHHHHH------hhcCcCcc----CCCceEEEE
Q 030113 118 HSVVLIFANKQDLKDA------------------------------MTPAEIT------DALSLHSI----KNHDWHIQA 157 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~------------------------------~~~~~~~------~~~~~~~~----~~~~~~~~~ 157 (183)
.+.+|+..||-|+..+ ....-.. +.+..... ..+.+...+
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 6889999999997521 0000000 00000000 123444567
Q ss_pred eecccCCCHHHHHHHHHHhhhcc
Q 030113 158 CSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+.|.+.++|..+|+...+.++..
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQRM 371 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHHH
Confidence 78899999999999877766543
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=76.74 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=83.6
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-----------ccCcccceeEEEEE--c--CeEEEEEEcCCChhh--
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-----------THPTVGSNVEELVY--K--NIRFEAWDVGGQERL-- 74 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-----------~~~~~~~~~~~~~~--~--~~~~~~~D~~g~~~~-- 74 (183)
....-.++|+++|+.|+|||||+|.|++..... ..+++.+....... + ..++.++||||--++
T Consensus 18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id 97 (373)
T COG5019 18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID 97 (373)
T ss_pred HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence 344678999999999999999999998763221 12333333333333 2 368899999992110
Q ss_pred ------------HhhHHhhc--------------cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 75 ------------RTSWATYY--------------RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 75 ------------~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
......|+ ...|+++|.+.++.. .+..+.-..+.-+.. .+.+|-|+.|+
T Consensus 98 Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~Ka 172 (373)
T COG5019 98 NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKA 172 (373)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeecc
Confidence 01111111 134899999998753 344444444444332 47789999999
Q ss_pred CCCCCCCHHHHHhhcCcCccCCCceEEEE
Q 030113 129 DLKDAMTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 129 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
|.........+++...... ...++++|.
T Consensus 173 D~lT~~El~~~K~~I~~~i-~~~nI~vf~ 200 (373)
T COG5019 173 DTLTDDELAEFKERIREDL-EQYNIPVFD 200 (373)
T ss_pred ccCCHHHHHHHHHHHHHHH-HHhCCceeC
Confidence 9876555554444443222 234455653
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-10 Score=85.93 Aligned_cols=160 Identities=15% Similarity=0.199 Sum_probs=111.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+...+|+.|+|..++|||+|+++++.+.+.....+.+-.+. .+.. ...-+.+.|.+|... ..|....|++|+
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 45779999999999999999999999888765544443332 2222 344556667666332 345667899999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+...+.++|+.+......+..+......|.++++++.-.............-.....+...+.+|++++..|.++...|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 99999999999988888887777666779999999987643222111111111111223345569999999999999999
Q ss_pred HHHHHhhh
Q 030113 171 EWISQRVT 178 (183)
Q Consensus 171 ~~i~~~~~ 178 (183)
..+...+.
T Consensus 182 ~~~~~k~i 189 (749)
T KOG0705|consen 182 QEVAQKIV 189 (749)
T ss_pred HHHHHHHH
Confidence 98887654
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-10 Score=73.62 Aligned_cols=95 Identities=17% Similarity=0.073 Sum_probs=61.9
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceE
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWH 154 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
+..+...++++|++++|+|++++..... ..+...... .++|+++|+||+|+.+........ ... ...+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCCc
Confidence 3456677788999999999987642211 122222221 358999999999985432111111 111 113356
Q ss_pred EEEeecccCCCHHHHHHHHHHhhhc
Q 030113 155 IQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++++|++++.|++++++.+.+.+..
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999999887653
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-09 Score=74.67 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=77.4
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc----------cCcccceeEEEEE--c--CeEEEEEEcCCChhh-
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----------HPTVGSNVEELVY--K--NIRFEAWDVGGQERL- 74 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~----------~~~~~~~~~~~~~--~--~~~~~~~D~~g~~~~- 74 (183)
....+.-.+.++++|+.|.|||||+|.|+....... ..+..+....... + ..++.++||||-.+.
T Consensus 14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 344556779999999999999999999987643321 1233333333333 2 367899999982110
Q ss_pred -------------HhhHHhh-----------cc--CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 75 -------------RTSWATY-----------YR--GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 75 -------------~~~~~~~-----------~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
......| +. ..|+++|.+.++.. .+..+.-.++.-+. ..+++|-|+.|+
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~Ka 168 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKA 168 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeecc
Confidence 1111111 22 45899999998753 23444444444433 347899999999
Q ss_pred CCCCCCCHHHHHh
Q 030113 129 DLKDAMTPAEITD 141 (183)
Q Consensus 129 Dl~~~~~~~~~~~ 141 (183)
|.........+++
T Consensus 169 D~lT~~El~~~K~ 181 (366)
T KOG2655|consen 169 DTLTKDELNQFKK 181 (366)
T ss_pred ccCCHHHHHHHHH
Confidence 9765544444333
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.3e-10 Score=79.61 Aligned_cols=151 Identities=18% Similarity=0.240 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcc-----------------cccC-------cccceeEE--EEE------------
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVV-----------------TTHP-------TVGSNVEE--LVY------------ 58 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~-----------------~~~~-------~~~~~~~~--~~~------------ 58 (183)
.++++|+|...+|||||+-.+.+++.. ++.. +.|++... ++|
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 489999999999999999888655432 1111 22222111 112
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccC--CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRG--THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP 136 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~ 136 (183)
.+--+.++|.+|+.+|.......+.. .|.+.+|+.+....... .+..+--+.. .++|++++++|+|+...-..
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchhH
Confidence 13467899999999998776655543 58899999987664322 1222222222 46999999999999754211
Q ss_pred ----HHHHhhcC---------------------cCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 137 ----AEITDALS---------------------LHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 137 ----~~~~~~~~---------------------~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
+++...+. .......-+|+|.+|+..|+|++-+...
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 11111111 1122345679999999999998766443
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.5e-10 Score=74.64 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=87.4
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC----------CcccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST----------DRARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+....+.+.++|++|+...+..|..++++.-.+++++..+ +.+.+.+....+..++.+.=..
T Consensus 186 TTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~ 265 (359)
T KOG0085|consen 186 TTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 265 (359)
T ss_pred cccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc
Confidence 444444445555678899999999999999999999887777776654 3345666667777777776667
Q ss_pred CCeEEEEEeCCCCCCCCC------------------HHHHHh----hcC-cCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 118 HSVVLIFANKQDLKDAMT------------------PAEITD----ALS-LHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~~~------------------~~~~~~----~~~-~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+.++|+..||.|+.++.. .+...+ .+. ...-...-..-..+.|.+.+||.-+|.++-
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk 345 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK 345 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence 899999999999864311 111111 110 000011122234567888999999999887
Q ss_pred Hhhhc
Q 030113 175 QRVTG 179 (183)
Q Consensus 175 ~~~~~ 179 (183)
+.+..
T Consensus 346 DtiLq 350 (359)
T KOG0085|consen 346 DTILQ 350 (359)
T ss_pred HHHHH
Confidence 76654
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-08 Score=74.79 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=69.2
Q ss_pred eEEEEEEcCCC-------------hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeC
Q 030113 61 IRFEAWDVGGQ-------------ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127 (183)
Q Consensus 61 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK 127 (183)
-++.++|.||- +....+...|+.+.++||+|+.- .|.+.-+.....++......+...|+|.+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 47899999992 33455678889999999999963 455666666677777777778999999999
Q ss_pred CCCCCC--CCHHHHHhhcCcCccCCCceEEEEee
Q 030113 128 QDLKDA--MTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 128 ~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.|+.+. ..+..+.+++.-..+......||.+-
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVV 522 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVV 522 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEE
Confidence 999764 35566666665444444444566654
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=82.98 Aligned_cols=111 Identities=19% Similarity=0.136 Sum_probs=78.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
+..+|.++-+-.+||||+-++++...-. ....|+........+...++.++|||||.+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 5578999999999999999888542210 0011222222335567899999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.-.....++..|++++++|+..+-. ......|..+.. .++|.+..+||+|..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 9999999999999999999875521 112233333322 469999999999964
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.2e-09 Score=70.03 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=83.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc----------ccCccccee--EEEEEcC--eEEEEEEcCCCh-----
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----------THPTVGSNV--EELVYKN--IRFEAWDVGGQE----- 72 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~----------~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~----- 72 (183)
....-+++|+|+|.+|.|||||+|.+....... ...|..... ..+..++ .++.++||||-.
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 344567999999999999999999996544322 111222221 1222233 578899999811
Q ss_pred -------------hhH--------hhHHhhcc--CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 73 -------------RLR--------TSWATYYR--GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 73 -------------~~~--------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
.+. ......+. ..++++|.+.++.. ++.-+.-.+..-+.. -+.++-|+-|+|
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaD 195 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKAD 195 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecc
Confidence 111 11112222 24889999988753 333333222222222 266899999999
Q ss_pred CCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 130 LKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
-...+...++++...... ...++.+|+--+.+-+
T Consensus 196 tlTleEr~~FkqrI~~el-~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKEL-EKHGIDVYPQDSFDED 229 (336)
T ss_pred cccHHHHHHHHHHHHHHH-HhcCcccccccccccc
Confidence 766656666665554332 2344456665554443
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-09 Score=69.29 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccce--eEEEEEcCeEEEEEEcCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN--VEELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~ 71 (183)
-+++++|.+|+|||||+|++.+......+...+.+ ...+..+. .+.+|||||-
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 38999999999999999999988765544433332 22233333 6899999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=78.23 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=62.1
Q ss_pred HhhccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEE
Q 030113 79 ATYYRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
...+.++|.+++|+|+.++. ....+..++.... ..++|+++|+||+|+.+........+.+ ...+++++.
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence 34578999999999998765 3334555555442 2468999999999996442222222222 123457999
Q ss_pred eecccCCCHHHHHHHHHHh
Q 030113 158 CSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~ 176 (183)
+||+++.|++++++.+...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988653
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=73.08 Aligned_cols=149 Identities=19% Similarity=0.110 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--cc-cCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCCCE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--TT-HPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGTHA 87 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 87 (183)
-++.++|-|.+||||++..+.+.... .+ .++...-.....++..++++.|.||.-+ ...+.....+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 58999999999999999999775432 11 1222222233457889999999998321 23445566778999
Q ss_pred EEEEEeCCCcccHHHH-----------------------------------------HHHHHHH----------------
Q 030113 88 VIVVIDSTDRARISIM-----------------------------------------KDELFRL---------------- 110 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~-----------------------------------------~~~~~~~---------------- 110 (183)
+++|.|+..|-+...+ +..+.+.
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 9999999877221111 1111111
Q ss_pred -----hCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 111 -----LGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 111 -----~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+.. ....+|.+.+.||+|...- +++.- ........++||..+.|++++++.+.+.+
T Consensus 220 dLIdvVeg-nr~yVp~iyvLNkIdsISi---EELdi-------i~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 220 DLIDVVEG-NRIYVPCIYVLNKIDSISI---EELDI-------IYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhcc-Cceeeeeeeeecccceeee---eccce-------eeeccceeecccccccchHHHHHHHhhcc
Confidence 111 1124889999999995321 12111 12233588999999999999999887754
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=6e-09 Score=68.06 Aligned_cols=90 Identities=20% Similarity=0.101 Sum_probs=57.8
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
.++++|.+++|+|++++..- ....+...+... ..++|+++|+||+|+.+..........+.. ......+.+|+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence 47889999999999886321 122233333221 245899999999999644222222222221 11223688999
Q ss_pred ccCCCHHHHHHHHHHhh
Q 030113 161 LTGDGLVDGLEWISQRV 177 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~ 177 (183)
+.+.|++++++.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999997654
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=73.61 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=74.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEc--------------------------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYK-------------------------------- 59 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~-------------------------------- 59 (183)
...-|+++|.=..|||||++.++..+++.. .||......-+...
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 446689999999999999999999888642 22222211111110
Q ss_pred ---------CeEEEEEEcCCChh-----------hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCC
Q 030113 60 ---------NIRFEAWDVGGQER-----------LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS 119 (183)
Q Consensus 60 ---------~~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (183)
--.+.++||||.-. |.....=+...+|.||++||+...+--++....+..+.. ..-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Ccc
Confidence 01689999999322 333445556889999999999765433334444444433 345
Q ss_pred eEEEEEeCCCCCCC
Q 030113 120 VVLIFANKQDLKDA 133 (183)
Q Consensus 120 ~vilv~nK~Dl~~~ 133 (183)
.+-+|.||+|..+.
T Consensus 213 kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT 226 (532)
T ss_pred eeEEEeccccccCH
Confidence 67889999997654
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-09 Score=76.04 Aligned_cols=151 Identities=20% Similarity=0.176 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcc-----------------c--ccCcccceeEEEE-----------------E--
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVV-----------------T--THPTVGSNVEELV-----------------Y-- 58 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~-----------------~--~~~~~~~~~~~~~-----------------~-- 58 (183)
..+++|+|+..+|||||+..+..++.. + ..+++|..+..+. |
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 489999999999999998776443321 1 1122222211111 1
Q ss_pred ---c-CeEEEEEEcCCChhhHhhHHhhcc--CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 59 ---K-NIRFEAWDVGGQERLRTSWATYYR--GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 59 ---~-~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+ ---+.|+|.+|+++|.......+. -.|...+++-++-. +.....+.+.......+|+.+|++|+|+.+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhhhhhhhcCcEEEEEEeeccCc
Confidence 1 235789999999998766544332 34778888877644 222222222222234699999999999987
Q ss_pred CCCHHHHHhhcCc-------------------------CccCCCceEEEEeecccCCCHHHHHHH
Q 030113 133 AMTPAEITDALSL-------------------------HSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 133 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
....++..+.+.. .+....-+|+|.+|..+|+|++.+.-.
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 6555543333221 111124678999999999998766443
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-09 Score=72.77 Aligned_cols=156 Identities=17% Similarity=0.097 Sum_probs=91.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-c-cCcccce-eEEEEEcCeEEEEEEcCC----------ChhhHhhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-T-HPTVGSN-VEELVYKNIRFEAWDVGG----------QERLRTSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 81 (183)
.+.+.++++|.+|+|||+|++-+....... . .+..+.+ ......-+-.+.++|.|| .+++......|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 567899999999999999999998765432 1 1122221 111222346788999999 23344555555
Q ss_pred ccC---CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh------cCcC--ccCC
Q 030113 82 YRG---THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA------LSLH--SIKN 150 (183)
Q Consensus 82 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~------~~~~--~~~~ 150 (183)
+.+ .-.+++++|++-+ +..........+. ..++|..+|.||+|.+.....-..+.. +... ....
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~g---e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~ 288 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLG---ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL 288 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHh---hcCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence 533 3456677777644 2222222222222 257999999999997653221000011 1100 0011
Q ss_pred CceEEEEeecccCCCHHHHHHHHHH
Q 030113 151 HDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 151 ~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
...|.+.+|+.++.|+++++-.+.+
T Consensus 289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 289 VDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccCCceeeecccccCceeeeeehhh
Confidence 2335667999999999998766554
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-09 Score=73.85 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred HhhccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEE
Q 030113 79 ATYYRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.... ...... ....+.+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~-~~~~~~----~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEE-ELELVE----ALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHH-HHHHHH----HHhCCCeEEE
Confidence 44578999999999999887 77777776665533 36899999999999654211 111111 1123468999
Q ss_pred eecccCCCHHHHHHHHHH
Q 030113 158 CSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~ 175 (183)
+|++++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988754
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=74.84 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=64.7
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
..++|.+++|++.....++..+..|+.... ..++|+++|+||+|+.+........+.... ....+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 467899999999988778888888876543 246899999999999754322222222211 12234689999999
Q ss_pred cCCCHHHHHHHHHHh
Q 030113 162 TGDGLVDGLEWISQR 176 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~ 176 (183)
++.|++++++++...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998754
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-09 Score=75.63 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=45.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGG 70 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g 70 (183)
.....+++|+|-||+||||+||+|.+.....+++..|++...... -.-.+.++||||
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPG 186 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPG 186 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCC
Confidence 356789999999999999999999999887777777766554433 234589999999
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-09 Score=74.53 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=42.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~ 71 (183)
...++++++|.+|+|||||+|++.+.......+..|++...... -+..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCc
Confidence 45689999999999999999999988766655555544433222 2346899999994
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-09 Score=68.98 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=40.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEE--EEEcCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE--LVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~ 71 (183)
...++++++|.+|+|||||++++.+..........+++... +... ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 34579999999999999999999987765444433333222 2222 56899999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-09 Score=67.43 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=42.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEE-EEcCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEEL-VYKNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g 70 (183)
....+++++|.+++||||+++++.+.......++.+++.... ...+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 356789999999999999999999877666666666554322 12344799999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-09 Score=74.23 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=41.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEE--EEEcCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE--LVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~ 71 (183)
...++++++|.+|+|||||+|++.+..........+++... +.. +..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-CCCEEEEECCCc
Confidence 35689999999999999999999987765555444433322 222 236899999995
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.1e-09 Score=74.53 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=58.9
Q ss_pred hccCCCEEEEEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 81 YYRGTHAVIVVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+.++|.+++|+|+.++...... ..|+... .. .++|+++|+||+|+.+. .......... ....+.+++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~--~~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDD--LEEARELLAL--YRAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCC--HHHHHHHHHH--HHHCCCeEEEEe
Confidence 46899999999999887655444 4444443 22 46899999999999632 1211111111 112345799999
Q ss_pred cccCCCHHHHHHHHHH
Q 030113 160 ALTGDGLVDGLEWISQ 175 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~ 175 (183)
++++.|++++++.+..
T Consensus 149 A~~g~gi~~L~~~l~g 164 (298)
T PRK00098 149 AKEGEGLDELKPLLAG 164 (298)
T ss_pred CCCCccHHHHHhhccC
Confidence 9999999999988643
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-08 Score=75.35 Aligned_cols=115 Identities=16% Similarity=0.299 Sum_probs=72.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc--ccCcccce---------------------------------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT--THPTVGSN--------------------------------------- 52 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~--~~~~~~~~--------------------------------------- 52 (183)
.+...||++.|..++||||++|+++.....+ ..+++.+.
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 3677899999999999999999996443211 01110000
Q ss_pred -----eEEEEEc-------CeEEEEEEcCCC---hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCC
Q 030113 53 -----VEELVYK-------NIRFEAWDVGGQ---ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 53 -----~~~~~~~-------~~~~~~~D~~g~---~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 117 (183)
...+-++ .-.+.++|.||- .....-+..+..++|++|+|.++-+. +......+.......
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~~--- 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSEE--- 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhcc---
Confidence 0001111 126788999983 34455567778899999999998543 544444444443332
Q ss_pred CCeEEEEEeCCCCCCC
Q 030113 118 HSVVLIFANKQDLKDA 133 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~ 133 (183)
+..+.|+.||+|....
T Consensus 261 KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 KPNIFILNNKWDASAS 276 (749)
T ss_pred CCcEEEEechhhhhcc
Confidence 5667888899997543
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-09 Score=77.99 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=65.2
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIK 149 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 149 (183)
++++......+...++++++|+|+.+... .....+.+.. .+.|+++|+||+|+.+.. ...+..+.+.... +
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~-k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA-K 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH-H
Confidence 56788888888899999999999976531 1222233332 257899999999986432 2333333221110 1
Q ss_pred CCc---eEEEEeecccCCCHHHHHHHHHHh
Q 030113 150 NHD---WHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 150 ~~~---~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
..+ ..++.+||+++.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 112 248999999999999999998764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=74.45 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=83.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
..+-++|+||||+|||||++.+...-...+...+.=-+.-+..+..++.+..+|.+ ...+....+-+|.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D---l~~miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD---LHQMIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH---HHHHHhHHHhhheeEEEeccc
Confidence 55788899999999999999887653322221111112234556789999999932 223344456689999999997
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccC--CCceEEEEeeccc
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIK--NHDWHIQACSALT 162 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~S~~~ 162 (183)
-+ |.--.-.+..++..... ..++-|.+..|+... .........+....+. +.++.+|..|...
T Consensus 145 fG--fEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 145 FG--FEMETMEFLNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cC--ceehHHHHHHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 55 32222233333333221 346678899998653 2333444433322221 3567788888654
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-08 Score=71.90 Aligned_cols=78 Identities=21% Similarity=0.120 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc-cc---ccCcccceeEEEEEc-----------------CeEEEEEEcCCCh----
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VT---THPTVGSNVEELVYK-----------------NIRFEAWDVGGQE---- 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~-~~---~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~~---- 72 (183)
++++|+|.|++|||||++++.+... .. ...|...+...+.+. ...+.+.|+||-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999987754 22 223344444434332 2478999999832
Q ss_pred ---hhHhhHHhhccCCCEEEEEEeCC
Q 030113 73 ---RLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 73 ---~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
.........++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 24446667789999999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-07 Score=63.89 Aligned_cols=84 Identities=14% Similarity=0.016 Sum_probs=57.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC--Cccc----ccCcccceeEEEEE---cCeEEEEEEcCCChhh------HhhHH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG--EVVT----THPTVGSNVEELVY---KNIRFEAWDVGGQERL------RTSWA 79 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~--~~~~----~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~------~~~~~ 79 (183)
.+..-|+|+|++++|||+|+|.+.+. .+.. ...|.|+-...... ....+.++||+|-... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45677899999999999999999988 5532 23455555444443 3578999999994332 22222
Q ss_pred hhccC--CCEEEEEEeCCCcc
Q 030113 80 TYYRG--THAVIVVIDSTDRA 98 (183)
Q Consensus 80 ~~~~~--~d~ii~v~d~~~~~ 98 (183)
..+.. ++.+||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 33333 78999988876543
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=67.01 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=63.2
Q ss_pred CCC-hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc
Q 030113 69 GGQ-ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS 147 (183)
Q Consensus 69 ~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (183)
||+ .+........++++|.+++|+|++++..... ..+.... .++|+++|+||+|+.+.....+..+.+..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-- 73 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-- 73 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh--
Confidence 443 3455666777899999999999987643211 1111211 24789999999998643211111121111
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
....++.+|++++.|++++.+.+.+.+
T Consensus 74 ---~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 ---KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123589999999999999999998875
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=71.47 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=66.1
Q ss_pred CCCh-hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc
Q 030113 69 GGQE-RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS 147 (183)
Q Consensus 69 ~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (183)
|||. +........++.+|.+++|+|+.++.+-.. ..+...+ .++|+++|+||+|+.+........+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 5543 455667778899999999999987643211 2223332 24799999999998643212222122211
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.+.+++.+|++++.|++++.+.+.+.+.+
T Consensus 76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ---KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 22468999999999999999988877654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-08 Score=64.40 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=53.6
Q ss_pred CEEEEEEeCCCcccHHHHHHHHH-HHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELF-RLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
|.+++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.+.....+....+. ......++.+|++++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 68999999988754321 2222 22222 4689999999999964321111111121 1123468999999999
Q ss_pred CHHHHHHHHHHhh
Q 030113 165 GLVDGLEWISQRV 177 (183)
Q Consensus 165 gi~~~~~~i~~~~ 177 (183)
|++++.+.+.+.+
T Consensus 72 gi~~L~~~i~~~~ 84 (155)
T cd01849 72 GIEKKESAFTKQT 84 (155)
T ss_pred ChhhHHHHHHHHh
Confidence 9999999987653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.3e-09 Score=79.73 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=77.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc---------------cccCcccceeEE----EEEcCeEEEEEEcCCChhhH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------TTHPTVGSNVEE----LVYKNIRFEAWDVGGQERLR 75 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~---------------~~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~ 75 (183)
....+++++.+...|||||+..+....-. +...+.|++... ...++..+.++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 45578999999999999999988543211 112333333322 22367899999999999999
Q ss_pred hhHHhhccCCCEEEEEEeCCCcc---cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
....+..+-+|++++++|+..+- +..-+++.|.. +...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence 99999999999999999998652 22333333332 355789999999
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=65.50 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=37.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccce--eEEEEEcCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN--VEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g 70 (183)
....+++++|.+|+|||||+|.+.+..........+++ ...... +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe-cCCEEEEECCC
Confidence 45688999999999999999999987643322222211 122222 35689999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=68.66 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=37.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc--------ccccCcccceeEEEEEc-CeEEEEEEcCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV--------VTTHPTVGSNVEELVYK-NIRFEAWDVGG 70 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~D~~g 70 (183)
+..+++++|.+|+|||||+|++.+... ...+...+++....... ...+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcC
Confidence 346899999999999999999987542 12233334443333331 12689999998
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.8e-07 Score=57.29 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=76.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEc--CeEEEEEEcC-CC--------------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYK--NIRFEAWDVG-GQ-------------------- 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~-g~-------------------- 71 (183)
+...+|+|.|+||+||||++.++...-.......-|+-...+..+ ..-|.++|+. |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 457899999999999999998886432211122223333333222 2344555554 20
Q ss_pred -hhh----HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC
Q 030113 72 -ERL----RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH 146 (183)
Q Consensus 72 -~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~ 146 (183)
+.+ ......+++.+|.+| +|--.+ ++.....+...+......+.|++.++.+.+..+ -.++...
T Consensus 83 v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P--~v~~ik~----- 151 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP--LVQRIKK----- 151 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh--HHHHhhh-----
Confidence 111 122334455667654 554433 333334444444333335688888888876421 1111111
Q ss_pred ccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 147 SIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
...+.+| .+.+|-+.+++.+...+..
T Consensus 152 ---~~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 152 ---LGGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ---cCCEEEE----EccchhhHHHHHHHHHhcc
Confidence 1222233 5556666888888877754
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.1e-08 Score=62.74 Aligned_cols=65 Identities=17% Similarity=0.057 Sum_probs=37.0
Q ss_pred CeEEEEEEcCCChhhHhhHHh--------hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWAT--------YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
..+..++|++|-.+-...... ..-..+.+++++|+........-...+...+... =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 356788999996543333322 2234699999999864432111112222322222 1789999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-09 Score=77.46 Aligned_cols=112 Identities=22% Similarity=0.168 Sum_probs=81.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC--------cc-------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE--------VV-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
+-.+|.|+.+-.+||||...+++.-. .. +...|+......+.+++.++.++||||+.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 45789999999999999998885311 00 1122333444567789999999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+-....+++-.|+++.|+|++.+-.-..+ ..|... ...++|.+.++||+|...
T Consensus 116 ~leverclrvldgavav~dasagve~qtl-tvwrqa----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhc----cccCCchhhhhhhhhhhh
Confidence 99999999999999999999865221111 222222 335689999999999754
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=67.55 Aligned_cols=84 Identities=25% Similarity=0.341 Sum_probs=59.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEE-----------------cCeEEEEEEcCC---
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVY-----------------KNIRFEAWDVGG--- 70 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~-----------------~~~~~~~~D~~g--- 70 (183)
..+.+++.|+|.|++|||||+|.+....... ...|+..+...+.. -...+++.|++|
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 3467899999999999999999997655431 22343333333322 146789999998
Q ss_pred ----ChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 71 ----QERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 71 ----~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
.+.......+.++.+|+++-|+++.+.
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 234556667778899999999988644
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.8e-08 Score=69.55 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=65.8
Q ss_pred cCCCh-hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC
Q 030113 68 VGGQE-RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH 146 (183)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~ 146 (183)
.|||. +........++.+|++++|+|+.++.+.. ..++..... +.|+++|.||+|+.+........+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSE--NPMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 36643 44566677789999999999998764321 122333322 578999999999864321112222121
Q ss_pred ccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 147 SIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
..+.+++.+|++++.|++++.+.+.+.+.+
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 113468999999999999999988876643
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.8e-08 Score=62.25 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=49.3
Q ss_pred HHhhccCCCEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEE
Q 030113 78 WATYYRGTHAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
....++++|++++|+|+.++.+.. .+..++... . .++|+++|+||+|+.++....+..+.+.. .+..+
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~~i 74 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGIVV 74 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCCeE
Confidence 345678999999999998875432 233333221 1 46899999999998643222222222221 22468
Q ss_pred EEeecccCCC
Q 030113 156 QACSALTGDG 165 (183)
Q Consensus 156 ~~~S~~~~~g 165 (183)
+++|+.++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999998764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-07 Score=66.28 Aligned_cols=96 Identities=17% Similarity=0.069 Sum_probs=53.3
Q ss_pred CeEEEEEEcCCChhh----HhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+..+.++||+|.... ........ .+.|..++|+|+.....-......+.... ..--++.||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecCCCC
Confidence 457999999996432 12222222 35789999999976543222222222221 124788999998543
Q ss_pred CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
.- ..+.... ..+.|+..++ +|++++++..
T Consensus 295 ~G-~~ls~~~------~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 295 GG-AALSIAY------VIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred cc-HHHHHHH------HHCcCEEEEe--CCCChhhccc
Confidence 22 1111111 1234677776 6888877654
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-07 Score=69.75 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCccc---------ceeEEEEEcCeEEEEEEcCCChhh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG---------SNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++++|.+|+|||||+|+|.+.....+....+ ....-+.... ...++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCcc
Confidence 36899999999999999999876433221111 1111222221 2358999996554
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-07 Score=65.85 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc-----------CcccceeEEEEEcCeEEEEEEcCCChh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-----------PTVGSNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
..++++|.+|+|||||+|++.+.....+. +|..... +... ...++||||-..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~--~~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFH--GGLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcC--CcEEEeCCCccc
Confidence 36789999999999999999876533211 1222222 2232 337999999544
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=69.24 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCccc---------ceeEEEEEcCeEEEEEEcCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG---------SNVEELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~D~~g~ 71 (183)
.++++|++|+|||||+|+|.+.....+....+ ....-+.... ...++||||.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~ 234 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGF 234 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCc
Confidence 37899999999999999999766443322222 1122222322 2378999994
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.1e-08 Score=70.82 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=97.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC----------------------------------cccccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE----------------------------------VVTTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~----------------------------------~~~~~~~~~~~~~~~~~~ 59 (183)
++..+++.++|+..+||||+-..+...- ......|++.....+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4678999999999999999976553211 001112333444445556
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc---HH---HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR---IS---IMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
..++.+.|.||+..+...+.....++|..++|+.+...+- |+ ..+........ ..-...|+++||+|-..-
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt---~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTV 232 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh---hccceEEEEEEeccCCcc
Confidence 7899999999999998888888889999999998854321 21 11122111111 123567999999996532
Q ss_pred CC----HHHHH----hhcCcC-ccCCCceEEEEeecccCCCHHHHHH
Q 030113 134 MT----PAEIT----DALSLH-SIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 134 ~~----~~~~~----~~~~~~-~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
.. ..+.. ..+... ........++++|..+|.++++..+
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 21 12222 222211 1122567799999999999887653
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.6e-07 Score=75.64 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=65.2
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccccc-----------CcccceeEEEEEcCeEEEEEEcCCCh--------hhHhhHHh
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVTTH-----------PTVGSNVEELVYKNIRFEAWDVGGQE--------RLRTSWAT 80 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 80 (183)
.+|+|++|+||||++..- +-.++-.. .+..+.++ -.-+-.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww----f~~~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW----FTDEAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE----ecCCEEEEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999877 44443211 11112222 12355689999921 22344555
Q ss_pred hcc---------CCCEEEEEEeCCCcc-----cH----HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 81 YYR---------GTHAVIVVIDSTDRA-----RI----SIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 81 ~~~---------~~d~ii~v~d~~~~~-----s~----~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++. -.+++|+++|+.+.- .. ..++..+.++.... ....||.+++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 542 359999999997442 11 23334444443332 24699999999999864
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=61.12 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc---------CcccceeEEEEEcCeEEEEEEcCCChh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH---------PTVGSNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
-.++++|++|||||||+|.|.+.....+. ........-+.. .....++||||-..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l-~~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL-PDGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE-TTSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec-CCCcEEEECCCCCc
Confidence 56789999999999999999887432211 011111222333 23567899999443
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=64.87 Aligned_cols=110 Identities=20% Similarity=0.143 Sum_probs=63.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc------cCCc----ccc------------cCcccceeEEEEE---------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH------LGEV----VTT------------HPTVGSNVEELVY--------------- 58 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~------~~~~----~~~------------~~~~~~~~~~~~~--------------- 58 (183)
+...|+++|++|+||||++.+++ +... ..+ ....++.+.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45678999999999999998885 2111 001 0111121111110
Q ss_pred --cCeEEEEEEcCCChhhHh----hHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 59 --KNIRFEAWDVGGQERLRT----SWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 59 --~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
.+..+.++||+|...... ....+ ..+.+.+++|+|++-...-......+.... .+.-+|.||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~-------~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSV-------DVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhcc-------CCcEEEEECccC
Confidence 256899999999543322 22222 235688999999976543322333333221 345788999997
Q ss_pred CC
Q 030113 131 KD 132 (183)
Q Consensus 131 ~~ 132 (183)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 53
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-07 Score=66.99 Aligned_cols=98 Identities=20% Similarity=0.188 Sum_probs=58.9
Q ss_pred hhhHhhHHhhccCCC-EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCcc-
Q 030113 72 ERLRTSWATYYRGTH-AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSI- 148 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~- 148 (183)
+.+...... +...+ .+++|+|+.+.. ......+.+.. .+.|+++|+||+|+.+.. ...++.+.+.....
T Consensus 57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNG-IGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHh-hcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHh
Confidence 345554443 44445 999999998753 12223333332 257899999999996432 22233222211100
Q ss_pred -CCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 149 -KNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 149 -~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......++.+||+++.|++++++.+.+..
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11112589999999999999999997653
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-07 Score=68.53 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc-----ccccCcccceeEEEEEc-CeEEEEEEcCCCh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV-----VTTHPTVGSNVEELVYK-NIRFEAWDVGGQE 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~ 72 (183)
.++.++|.+|+|||||+|++.+... ...+...+++....... ...+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCC
Confidence 5899999999999999999987532 22333344433332222 2346799999943
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.3e-07 Score=59.60 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=60.2
Q ss_pred eEEEEEEcCCChhhHh------hHHhhccC---CCEEEEEEeCC---CcccH-HHHHHHHHHHhCCCCCCCCeEEEEEeC
Q 030113 61 IRFEAWDVGGQERLRT------SWATYYRG---THAVIVVIDST---DRARI-SIMKDELFRLLGHEDLQHSVVLIFANK 127 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~------~~~~~~~~---~d~ii~v~d~~---~~~s~-~~~~~~~~~~~~~~~~~~~~vilv~nK 127 (183)
-.+.++|+|||-.... ....+++. --+.+|++|.. +...| ......+..+.. ...|-|=|.+|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 4788999999755321 12222222 23667777764 22111 122222222222 35888999999
Q ss_pred CCCCCCCCHHHHHhhcCcC---------------------------ccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 128 QDLKDAMTPAEITDALSLH---------------------------SIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 128 ~Dl~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+|+......+++...+.-. .....-+.|.+....+.++++.++..|-..+
T Consensus 174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 9987654434433333210 1112345567777667777777776665544
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.8e-08 Score=70.16 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=53.4
Q ss_pred hhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccce-eEEEEEcCeEEEEEEcCC
Q 030113 3 ALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN-VEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g 70 (183)
+++..|-++...++++.|.+||.||+||||+||.|-....+...|..|.+ .+.+..-..++-++|+||
T Consensus 293 ~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 293 QLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred HHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCC
Confidence 35666777777899999999999999999999999888888877766643 233322345788899999
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-06 Score=61.43 Aligned_cols=100 Identities=19% Similarity=0.083 Sum_probs=58.0
Q ss_pred eEEEEEEcCCChhhHhhHHhhcc--------CCCEEEEEEeCCCcccHHH-HHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSWATYYR--------GTHAVIVVIDSTDRARISI-MKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
....++.+.|-..=......++. ..|+++-|+|+........ +...+...+... =++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 45677788875443333333322 3488999999976543222 344444444432 28999999998
Q ss_pred CCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
+......+.+.+.. .++.++++.+|. ......+++
T Consensus 159 ~~~~l~~l~~~l~~---lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEELEALEARLRK---LNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHHHHHHHHHHHH---hCCCCeEEEccc-cCCCHHHhh
Confidence 76544444444332 346677888886 333343443
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-07 Score=68.82 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=42.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee-EEEEEcCeEEEEEEcCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV-EELVYKNIRFEAWDVGG 70 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g 70 (183)
.+.|+++|-|||||||.||+|.|......+.|.|-+. ..-..-.-.+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 5999999999999999999999999888777777332 22222345678899999
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-07 Score=66.92 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC-----cccccCcccceeEEEEEc-CeEEEEEEcCCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE-----VVTTHPTVGSNVEELVYK-NIRFEAWDVGGQ 71 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~ 71 (183)
..++.++|.+|+|||||+|++.+.. ....++..|++.....+. .....++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCc
Confidence 3579999999999999999998543 122333444443333321 123479999995
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.2e-06 Score=56.11 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=37.2
Q ss_pred CeEEEEEEcCCChhhHh----hHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRT----SWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+..+.++||+|...... .+..++ ...+-+++|++++....-......+..... +--++.||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~-------~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG-------IDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS-------TCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc-------CceEEEEeecCCCC
Confidence 46799999999543221 222221 256889999999865432222222222221 12577999997543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-06 Score=53.90 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=36.3
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
+..+.++||+|.... ...++..+|.++++..+.-.+.+ .-....++.. --++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y---~~~k~~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDI---QAIKAGIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHH---HHhhhhHhhh------cCEEEEeCCC
Confidence 468999999885432 23478889999999987633222 2211222221 1388999987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-06 Score=61.96 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=55.8
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
..++|.+++|+++..+-....+...+..+.. .+++.++|+||+||.+. ..+..+.+... ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5788999999999744333333333333322 35777999999999754 11222222211 345679999999
Q ss_pred cCCCHHHHHHHHH
Q 030113 162 TGDGLVDGLEWIS 174 (183)
Q Consensus 162 ~~~gi~~~~~~i~ 174 (183)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.1e-06 Score=60.78 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=47.3
Q ss_pred eEEEEEEcCCChhhHhhHHhhcc--------CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSWATYYR--------GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
....++.+.|...-......++. ..++++.|+|+.+......-.......+... =++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 45678888887655444444322 2489999999965422111111121222221 289999999876
Q ss_pred CCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 133 AMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.. ..+.+.+.. -++.++++.++
T Consensus 165 ~~--~~~~~~l~~---lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA--EKLRERLAR---INARAPVYTVV 186 (318)
T ss_pred HH--HHHHHHHHH---hCCCCEEEEec
Confidence 42 334333322 23455666554
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.5e-07 Score=63.31 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCc-----cc--ce--eEEEEEcCeEEEEEEcCCChhh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT-----VG--SN--VEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~-----~~--~~--~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
..++++|++|+|||||+|.+.+......... .| ++ ...+.... ...++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 5789999999999999999988654332111 01 11 12222221 3368999997654
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.8e-06 Score=60.42 Aligned_cols=138 Identities=24% Similarity=0.246 Sum_probs=73.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc----------ccc------------CcccceeEEE-----------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV----------TTH------------PTVGSNVEEL----------------- 56 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~----------~~~------------~~~~~~~~~~----------------- 56 (183)
+...++++|++|+||||++..++..-.. ... ...+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999888532100 000 0011111111
Q ss_pred EEcCeEEEEEEcCCChhhHh----hHHhhc--------cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q 030113 57 VYKNIRFEAWDVGGQERLRT----SWATYY--------RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~----~~~~~~--------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv 124 (183)
...+..+.++||||...... ....+. ...+..++|+|++... +.+.. ........ .+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~----~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV----GLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC----CCCEEE
Confidence 01346899999999543211 111111 2467889999998542 22222 22222111 234789
Q ss_pred EeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 125 ANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 125 ~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
.||.|.....- ...+... .+.|+..++ +|++++.+-
T Consensus 266 lTKlD~t~~~G~~l~~~~~--------~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADE--------LGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHH--------HCCCEEEEe--CCCChhhCc
Confidence 99999643321 1111111 244677776 677776653
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=62.63 Aligned_cols=56 Identities=20% Similarity=0.108 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccccCccc---------ceeEEEEEcCeEEEEEEcCCChh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG---------SNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
...++++|++|+|||||+|++.+........... .....+.... ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCc
Confidence 3468899999999999999998765433221111 1112222222 347899999653
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.6e-06 Score=58.84 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=52.5
Q ss_pred cCeEEEEEEcCCChhhHhhH----Hh---hc-----cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q 030113 59 KNIRFEAWDVGGQERLRTSW----AT---YY-----RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~----~~---~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~n 126 (183)
.+..+.++||||........ .. .. ..+|..++|+|++... +.. .....+.... .+.-+|.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEE
Confidence 34689999999965422221 11 11 1379999999997542 222 2223322211 23578999
Q ss_pred CCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 127 KQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 127 K~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|.|.....- ...+.... +.|+..++ +|++++.+-.
T Consensus 226 KlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred ccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCcc
Confidence 999754322 12222221 34566666 6777766543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5e-06 Score=61.30 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc---------ccC---------------cccceeEEEE-----------EcCe
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT---------THP---------------TVGSNVEELV-----------YKNI 61 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~---------~~~---------------~~~~~~~~~~-----------~~~~ 61 (183)
.-.++++|++|+||||++.+|....... ... ..++...... ..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4577899999999999999886421100 000 1122221111 1356
Q ss_pred EEEEEEcCCChhhHhh---HHhhc---cCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCC-CeEEEEEeCCCCCC
Q 030113 62 RFEAWDVGGQERLRTS---WATYY---RGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQH-SVVLIFANKQDLKD 132 (183)
Q Consensus 62 ~~~~~D~~g~~~~~~~---~~~~~---~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~-~~vilv~nK~Dl~~ 132 (183)
.+.++||+|....... ....+ ....-.++|++++... .+......+..........- .+-=+|.||.|-..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 8999999995532221 11222 2345668899987543 33444444444322110000 12357789999654
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.7e-06 Score=60.76 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=60.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc----------cccc------------CcccceeEEEEE--------------c
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV----------VTTH------------PTVGSNVEELVY--------------K 59 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~----------~~~~------------~~~~~~~~~~~~--------------~ 59 (183)
+...|+++|++|+||||++.+|+..-. ..+. ...++....... .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 346899999999999999998853110 0000 011111111100 1
Q ss_pred CeEEEEEEcCCChhh----HhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+.++||+|.... ...+...+ ...+.+++|+|++-.. .........+-. . ..--+++||.|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~-~----~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-I----HIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC-C----CCCEEEEEcccCCC
Confidence 358999999995332 12223333 2357889999985331 222333333221 1 22368899999754
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-06 Score=61.00 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
..+++|.+|+|||||+|+|.+..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 55799999999999999998744
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.6e-06 Score=56.90 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=73.4
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEE--c--CeEEEEEEcCCC-------hh
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVY--K--NIRFEAWDVGGQ-------ER 73 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~--~--~~~~~~~D~~g~-------~~ 73 (183)
.+....-.++|+-+|..|.|||||+..+.+-.+... .+.+......+.. . ..++.++||.|- +.
T Consensus 35 ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~S 114 (406)
T KOG3859|consen 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDS 114 (406)
T ss_pred HHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccc
Confidence 334456779999999999999999999988776432 2333333333333 1 367899999981 11
Q ss_pred h-------HhhHHhh-------------c--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 74 L-------RTSWATY-------------Y--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 74 ~-------~~~~~~~-------------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
+ ......| + ...++++|.+.++. -++..+......-+. ..+.+|-++-|.|-.
T Consensus 115 yk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 115 YKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTI 189 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence 1 1111111 1 23488888888875 345555544444333 246788889999965
Q ss_pred C
Q 030113 132 D 132 (183)
Q Consensus 132 ~ 132 (183)
.
T Consensus 190 s 190 (406)
T KOG3859|consen 190 S 190 (406)
T ss_pred h
Confidence 4
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=65.68 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=64.0
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccccc-------CcccceeEEEEEcCeEEEEEEcCCC--------hhhHhhHHhhc--
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVTTH-------PTVGSNVEELVYKNIRFEAWDVGGQ--------ERLRTSWATYY-- 82 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~-- 82 (183)
-+|||++|+||||++..- +..|+... ...++.... -+-.-.-.++||.|. +.-...|..++
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 469999999999998654 33333211 111101000 112345678899982 22344555442
Q ss_pred -------cCCCEEEEEEeCCCccc---------HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 83 -------RGTHAVIVVIDSTDRAR---------ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 83 -------~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+-.++||+.+|+++.-. ...++.-+.++.... ....||.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEecccccc
Confidence 34599999999974421 122333344443332 24699999999999865
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=53.96 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=42.1
Q ss_pred eEEEEEEcCCChhhHhhH-----HhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSW-----ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~ 134 (183)
....++.+.|...-.... ....-..+.++.|+|+............+...+.... ++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence 567888988855433331 1112245899999999765444455566666665533 8999999987554
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-06 Score=63.60 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=45.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g 70 (183)
++.++++|+|-|++||||+||.|.....+...++.|++...-.. -+..+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCc
Confidence 57899999999999999999999988887777777765433222 356788999999
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=60.70 Aligned_cols=110 Identities=26% Similarity=0.235 Sum_probs=59.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC------c----ccc-cC-----------cccceeEEEE---------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE------V----VTT-HP-----------TVGSNVEELV--------------- 57 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~------~----~~~-~~-----------~~~~~~~~~~--------------- 57 (183)
.....|+++|++|+||||.+..++..- . ... .+ ..+.......
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346788999999999999988774210 0 000 00 0111111000
Q ss_pred EcCeEEEEEEcCCChhhHhh----HHh--hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 58 YKNIRFEAWDVGGQERLRTS----WAT--YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.....+.++||+|....... ... ....+|.+++|+|++.... .......+.... ...-+|.||.|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l----~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAV----GIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcC----CCCEEEEecccCC
Confidence 01347899999996543221 111 2346789999999976532 222222221111 1235778999964
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-05 Score=51.28 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=38.2
Q ss_pred CeEEEEEEcCCChhh----HhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+.++|++|.... ......+. ...+.+++|+|+....+ .......+..... ..-++.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~----~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG----ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC----CCEEEEECCcCCC
Confidence 456889999996432 11112111 34899999999875432 2233333332211 2467779999754
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.2e-05 Score=56.77 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=49.2
Q ss_pred eEEEEEEcCCChhhHhhHHhhc-------cCCCEEEEEEeCCCccc--H--------------------HHHHHHHHHHh
Q 030113 61 IRFEAWDVGGQERLRTSWATYY-------RGTHAVIVVIDSTDRAR--I--------------------SIMKDELFRLL 111 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~-------~~~d~ii~v~d~~~~~s--~--------------------~~~~~~~~~~~ 111 (183)
....++++.|...-......+. -..|+++.|+|+.+... + ..+...+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4677889998766544444331 13489999999974311 0 00112222222
Q ss_pred CCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 112 GHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 112 ~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
... =++++||+|+.+......+.+.+... .....++++++
T Consensus 173 ~~A------D~IvlnK~Dl~~~~~l~~~~~~l~~~--~~~~a~i~~~~ 212 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAAGLARVRAEIAAE--LPRAVKIVEAS 212 (341)
T ss_pred HhC------CEEEEeccccCCHHHHHHHHHHHHHh--CCCCCEEEEcc
Confidence 221 28999999998765544554444321 11233566554
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-05 Score=58.76 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=36.2
Q ss_pred CeEEEEEEcCCChhh----HhhHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
+..+.++||+|.... ....... ....+.+++|+|+..... .......+.... ...-+|.||.|..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~----~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL----GLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 467999999995432 1111111 125688899999875432 223333332211 1235677999953
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=59.47 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=59.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc----ccc-----c---------------CcccceeEEE-----------EEcC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV----VTT-----H---------------PTVGSNVEEL-----------VYKN 60 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~----~~~-----~---------------~~~~~~~~~~-----------~~~~ 60 (183)
..-.++++|++|+||||++.+|.+... ... . ...++..... ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 345899999999999999998865310 000 0 0111111100 1124
Q ss_pred eEEEEEEcCCChhhH----hhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 61 IRFEAWDVGGQERLR----TSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
..+.++||+|..... .....+. ....-.++|+|++.. ...+......+. .. ..-=+++||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~-~~----~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQ-GH----GIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhc-CC----CCCEEEEEeeeCCC
Confidence 578999999955422 2222221 224567899998743 223333333321 11 22367899999654
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=58.17 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=58.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc-ccccCccc-----------------------ceeEEE-----------EEcC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVG-----------------------SNVEEL-----------VYKN 60 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~-----------------------~~~~~~-----------~~~~ 60 (183)
+.-.|+++||+|+||||-+.+|+.... ......++ +...-+ ....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 366788999999999999888754332 11111111 111110 1125
Q ss_pred eEEEEEEcCCChhh----HhhHHhhccCC--CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 61 IRFEAWDVGGQERL----RTSWATYYRGT--HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 61 ~~~~~~D~~g~~~~----~~~~~~~~~~~--d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.++.++||.|.... ...+..++... .-..+|++++.. ...+..-+..+... ..-=+++||.|-..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccC
Confidence 68999999995433 23334444332 445567777643 22333333333211 11247789999654
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.5e-05 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.-.+-|.|+||..+|||||+.++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 356889999999999999999994
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.9e-05 Score=49.02 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998643
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.02 E-value=2e-05 Score=41.51 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=27.3
Q ss_pred CCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 84 GTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
-.++++|++|++..+ +.+.....+..+.... .++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 358999999999765 4555556666665442 4799999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=60.17 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=74.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC------------cccc---cCcccceeEEE--------------------EE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE------------VVTT---HPTVGSNVEEL--------------------VY 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~------------~~~~---~~~~~~~~~~~--------------------~~ 58 (183)
..+-.++.||.+...|||||...+.... +..+ ....++++..- ..
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 3456789999999999999998885432 1111 11111221110 11
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
.+.-+.++|.||+.+|.+..-..++-.|+.++|+|..+.-.... ...+.+.+... +.-+++.||+|.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~ER----IkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAER----IKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHhh----ccceEEeehhhH
Confidence 24678999999999999999999999999999999876643322 12333333332 334688999994
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.5e-05 Score=59.15 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=58.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC--------Ccc--c--cc------------CcccceeEEEE-----------EcC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG--------EVV--T--TH------------PTVGSNVEELV-----------YKN 60 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~--------~~~--~--~~------------~~~~~~~~~~~-----------~~~ 60 (183)
..-.++++|++|+||||++.+|... ... . .+ ...++...... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3467889999999999999887531 110 0 00 01111111111 125
Q ss_pred eEEEEEEcCCChhhHhh----HH--hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTS----WA--TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
..+.++||+|....... .. .... ....++|++.+.. ...+...+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 68999999995432211 11 1111 2356777777642 3333333333321 135679999999743
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.8e-05 Score=44.71 Aligned_cols=69 Identities=20% Similarity=0.132 Sum_probs=45.4
Q ss_pred EEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhh-HHhhccCCCEEEEEEeCCCc
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS-WATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~ 97 (183)
+++.|.+|+||||+...+...-.. .+.....+. .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 578899999999998887543211 112221121 8899999986543321 23456678999999988754
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.1e-05 Score=55.97 Aligned_cols=23 Identities=43% Similarity=0.535 Sum_probs=19.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
..-.++++|++|+||||++.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999998885
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.8e-05 Score=56.93 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=36.5
Q ss_pred CeEEEEEEcCCChhh----HhhHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
+..+.++||+|.... ......+ .-..+.+++|+|+..... .......+.... ...-+|.||.|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~---~~~~a~~f~~~v----~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD---AVNTAKTFNERL----GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH---HHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 457899999995322 1222111 235789999999875532 222223322111 1235778999953
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.5e-05 Score=52.67 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=38.1
Q ss_pred EEEEEEcC-CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCC-CeEEEEEeCCCCC
Q 030113 62 RFEAWDVG-GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQH-SVVLIFANKQDLK 131 (183)
Q Consensus 62 ~~~~~D~~-g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~vilv~nK~Dl~ 131 (183)
.+.++||- |-++|.+ ...+++|.+|.|+|++.. ++... ....++... .+ .++.+|.||+|-.
T Consensus 135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHH---hCCceEEEEEeeccch
Confidence 56666664 4555443 234678999999999853 33222 222333222 23 7899999999954
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.7e-05 Score=49.99 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
--++|.|++|+|||++++++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 346789999999999999997653
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.3e-05 Score=56.83 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=38.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCc-----ccccCcccceeEE---EEE-cCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEV-----VTTHPTVGSNVEE---LVY-KNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~-----~~~~~~~~~~~~~---~~~-~~~~~~~~D~~g 70 (183)
..++++.|+|-||+|||||+|++..... .......|++... +.+ ....+.++||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 4679999999999999999998854332 2233444443322 222 456689999999
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=52.58 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=66.7
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCC--------------
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQ-------------- 71 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------------- 71 (183)
...+......+...++++|++|.|||++++++.....+..... . ..+.+..+..|..
T Consensus 50 ~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~--------~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 50 EELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-A--------ERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-C--------ccccEEEEecCCCCChHHHHHHHHHHh
Confidence 4455666677789999999999999999999987553322111 0 1234555555531
Q ss_pred ----------hhhHhhHHhhccCCCEEEEEEeCCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 72 ----------ERLRTSWATYYRGTHAVIVVIDSTDR---ARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 72 ----------~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
.+........++....-++++|=-.. .+....+..+..+....+...+|++.+|++-
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 12223334556777888899985321 1222222222222222233569999998764
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00033 Score=44.56 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=25.3
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
............+++.|++|+|||++++.+...-
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3333334455678899999999999999997653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.2e-05 Score=55.30 Aligned_cols=111 Identities=20% Similarity=0.123 Sum_probs=67.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC----c------ccc------------cCcccceeEEEE--------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE----V------VTT------------HPTVGSNVEELV-------------- 57 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~----~------~~~------------~~~~~~~~~~~~-------------- 57 (183)
.+++..|+++|-.|+||||.+-+|+..- . ... ...+++.+....
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 4567889999999999999987774210 0 000 011222222111
Q ss_pred ---EcCeEEEEEEcCCChhhHhhH----Hh--hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 58 ---YKNIRFEAWDVGGQERLRTSW----AT--YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 58 ---~~~~~~~~~D~~g~~~~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
.....+.++||+|........ .. -.-+.|-+++|+|+.-++.-.+....+.+.+.. .=+|+||.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKL 249 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcc
Confidence 024689999999954443322 11 134679999999998876555555555555433 24677888
Q ss_pred CCC
Q 030113 129 DLK 131 (183)
Q Consensus 129 Dl~ 131 (183)
|-.
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred cCC
Confidence 864
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00021 Score=53.31 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCc---------c-----cc------------cCcccceeEEEE-----------Ec
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEV---------V-----TT------------HPTVGSNVEELV-----------YK 59 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~---------~-----~~------------~~~~~~~~~~~~-----------~~ 59 (183)
...|+++|++|+||||.+.+++..-. . .+ ....++...... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45788999999999999887753110 0 00 011122111111 13
Q ss_pred CeEEEEEEcCCChhhH----hhHHhhccC---CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLR----TSWATYYRG---THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~----~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+.++||+|..... .....++.. ..-.++|+|++.. ...+...+..+... .+--+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence 5789999999954321 122333332 2368899999865 33344444443211 23468899999643
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.7e-05 Score=61.52 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc------------cc------------CcccceeEEE-----------EEcCeE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT------------TH------------PTVGSNVEEL-----------VYKNIR 62 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~------------~~------------~~~~~~~~~~-----------~~~~~~ 62 (183)
-.++++|+.|+||||.+.+++...... +. ...++..... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 467899999999999999887532100 00 0111111100 112458
Q ss_pred EEEEEcCCChh----hHhhHHhh--ccCCCEEEEEEeCCCc-ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 63 FEAWDVGGQER----LRTSWATY--YRGTHAVIVVIDSTDR-ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 63 ~~~~D~~g~~~----~~~~~~~~--~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+.++||+|... ........ ....+-.++|+|++.. +.+.++...+...... .+-=+|+||.|-..
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCC
Confidence 99999999322 22222221 2345678899998743 3344444444332110 12357899999653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-05 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
-++++|++|||||||++.+.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999987554
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.1e-05 Score=56.29 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=36.9
Q ss_pred CeEEEEEEcCCChhhH----hhHHhhcc---CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLR----TSWATYYR---GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...+.++||+|..... .....++. ...-.++|++++.. ...+...+..+- .. .+--++.||.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~~----~~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-RL----PLDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-CC----CCCEEEEecccccc
Confidence 4689999999964332 22333333 23467788888643 223333333331 11 12368899999743
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.6e-05 Score=54.20 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCChhhH------hhHHhhccCCCEEEEEEeCC------CcccHHHHHH-HHHHHhCCCCCCCCeEEEEEe
Q 030113 60 NIRFEAWDVGGQERLR------TSWATYYRGTHAVIVVIDST------DRARISIMKD-ELFRLLGHEDLQHSVVLIFAN 126 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~------~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~n 126 (183)
..++.++|+|||-++. ..+...+++.+.-+.++... +|..|-.... .+..++ + ...|=+=|..
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl-~---melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML-H---MELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH-h---hcccchhhhh
Confidence 4578999999975532 22334455566655555543 3433322221 111111 1 2356677889
Q ss_pred CCCCC
Q 030113 127 KQDLK 131 (183)
Q Consensus 127 K~Dl~ 131 (183)
|+|+.
T Consensus 172 K~Dl~ 176 (290)
T KOG1533|consen 172 KADLL 176 (290)
T ss_pred HhHHH
Confidence 99974
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-05 Score=49.85 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999654
|
... |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.2e-05 Score=54.74 Aligned_cols=98 Identities=19% Similarity=0.183 Sum_probs=56.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--------------cc-----c---ccCcccceeE-E----------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--------------VV-----T---THPTVGSNVE-E---------------- 55 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--------------~~-----~---~~~~~~~~~~-~---------------- 55 (183)
.++--|.++|-.|+||||.+.+++... |. + .....++.++ .
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 355668899999999999988774211 10 0 0001111111 1
Q ss_pred EEEcCeEEEEEEcCCChhhHh----hHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhC
Q 030113 56 LVYKNIRFEAWDVGGQERLRT----SWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLG 112 (183)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 112 (183)
+.-+...+.++||.|..+... .+... .-+.|-+|+|.|++-.+.-......+.....
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 111367899999999543222 22111 2357999999999877654444455555443
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00014 Score=54.52 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcc-----------cc------------cCcccceeEEE----------EEcCeEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVV-----------TT------------HPTVGSNVEEL----------VYKNIRF 63 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~-----------~~------------~~~~~~~~~~~----------~~~~~~~ 63 (183)
...++++|++|+||||++.+|+..... .. ....+...... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 356889999999999999888642100 00 01111111111 0135688
Q ss_pred EEEEcCCChhh----HhhHHhhcc-----CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 64 EAWDVGGQERL----RTSWATYYR-----GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 64 ~~~D~~g~~~~----~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.++||+|.... ...+..++. ...-.++|+|++... ..+......+ ... -+--+|.||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~~----~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ESL----NYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cCC----CCCEEEEEcccCCC
Confidence 99999995321 122222222 234688999988653 2232222222 211 22368899999643
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.7e-05 Score=53.40 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=57.3
Q ss_pred ccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 82 YRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
..+.|-.++++.+.+|+- ..-+...+... .. .++..++|+||+|+.++..... .+.+ ......+++.+.+|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e~---~gi~pvIvlnK~DL~~~~~~~~-~~~~--~~y~~~gy~v~~~s~ 149 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA-EA---GGIEPVIVLNKIDLLDDEEAAV-KELL--REYEDIGYPVLFVSA 149 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHH-HH---cCCcEEEEEEccccCcchHHHH-HHHH--HHHHhCCeeEEEecC
Confidence 344677777777777753 33333333333 22 4567788899999987654443 1111 122346778999999
Q ss_pred ccCCCHHHHHHHHHHh
Q 030113 161 LTGDGLVDGLEWISQR 176 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~ 176 (183)
+++.|++++.+.+...
T Consensus 150 ~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 150 KNGDGLEELAELLAGK 165 (301)
T ss_pred cCcccHHHHHHHhcCC
Confidence 9999999999887654
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+|+|+|++|+|||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988653
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.1e-05 Score=42.44 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHhc
Q 030113 19 KIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~ 38 (183)
..+|.|+.|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998874
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=55.69 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.--++++|++|+||||.+.+|+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35688999999999999998864
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+|+|+|+||+||||+..+|+..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999765
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=52.17 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
+|+|+|++|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=52.03 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=61.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc-----c-----------------cccCcccceeEEEE--------------Ec
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-----V-----------------TTHPTVGSNVEELV--------------YK 59 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~-----~-----------------~~~~~~~~~~~~~~--------------~~ 59 (183)
+.-+++++|++|+||||++..+...-. . ......++...... ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 446999999999999999887743210 0 00011111111100 02
Q ss_pred CeEEEEEEcCCChhh----HhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+.++||+|.... ...+..++ ...+-.++|+|++.. .......+..+-. . .+--++.||.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-~----~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-I----HIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-C----CCCEEEEEeecCCC
Confidence 468999999996532 22222322 245778999998633 2233333333321 1 23468899999754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.7e-05 Score=51.30 Aligned_cols=28 Identities=29% Similarity=0.214 Sum_probs=23.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
..-+++|+|++|+|||||+|.+.+-..+
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCC
Confidence 3457899999999999999999876554
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.8e-05 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
-++|+|++|||||||+|.+.+-..+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5789999999999999999665433
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.1e-05 Score=51.76 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
+.=.++|+||+|||||||++.+.+-+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 334678999999999999999966544
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00027 Score=42.64 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=47.5
Q ss_pred EEEEc-CCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 20 IIIVG-LDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 20 i~viG-~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
|++.| ..|+||||+...+...-.. .+....-+.. ....+.++|+|+..... ....+..+|.++++.+.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~- 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP- 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH-
Confidence 56666 5699999998766432111 1111111111 11678999999865432 2366778999999998864
Q ss_pred ccHHHHHHHH
Q 030113 98 ARISIMKDEL 107 (183)
Q Consensus 98 ~s~~~~~~~~ 107 (183)
.++......+
T Consensus 74 ~s~~~~~~~~ 83 (104)
T cd02042 74 LDLDGLEKLL 83 (104)
T ss_pred HHHHHHHHHH
Confidence 3444444443
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00036 Score=50.31 Aligned_cols=111 Identities=23% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc----------cc------------cCcccceeEEEEE-------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------TT------------HPTVGSNVEELVY------------- 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------~~------------~~~~~~~~~~~~~------------- 58 (183)
..+.+-|+++|-.|+||||-+-+++..-.. .+ ....++....-..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 346889999999999999998887431100 00 0111122111111
Q ss_pred ----cCeEEEEEEcCCChhhHh----h---HHhhccC-----CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q 030113 59 ----KNIRFEAWDVGGQERLRT----S---WATYYRG-----THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL 122 (183)
Q Consensus 59 ----~~~~~~~~D~~g~~~~~~----~---~~~~~~~-----~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi 122 (183)
.+..+.++||+|.-+... . +...++. .+-+++++|++-++.=-+....+...... -=
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~G 288 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DG 288 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ce
Confidence 367899999999433211 1 1122222 24588899998775433334455555432 25
Q ss_pred EEEeCCCCC
Q 030113 123 IFANKQDLK 131 (183)
Q Consensus 123 lv~nK~Dl~ 131 (183)
++.||.|..
T Consensus 289 iIlTKlDgt 297 (340)
T COG0552 289 IILTKLDGT 297 (340)
T ss_pred EEEEecccC
Confidence 889999953
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.9e-05 Score=48.75 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++|+|+.|+|||||++.+++...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4678999999999999999987754
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.5e-05 Score=49.30 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHhcc
Q 030113 20 IIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~ 39 (183)
|+++|++|+|||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999863
|
... |
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00056 Score=47.45 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=27.8
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+..+-....+..++++.|+.|+||||++++++..
T Consensus 41 ~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 41 ENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred HHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 33444455677889999999999999999999754
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.8e-05 Score=52.06 Aligned_cols=27 Identities=30% Similarity=0.160 Sum_probs=23.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+.+...|+|.|++|||||||++.+...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999988653
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.3e-05 Score=42.20 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999654
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.2e-05 Score=49.03 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=26.7
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
............|+|.|++||||||+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 334455678889999999999999999999654
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.3e-05 Score=51.78 Aligned_cols=27 Identities=33% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+++..-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999999999999653
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.9e-05 Score=49.73 Aligned_cols=132 Identities=23% Similarity=0.271 Sum_probs=59.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcC--eEEEEEEc-CCC----------------------hh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN--IRFEAWDV-GGQ----------------------ER 73 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~-~g~----------------------~~ 73 (183)
+|++.|++|+||||++.+++..-.....+..|+....+..++ .-+.+.|. .|. +.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 689999999999999999864321112233333333333222 23444444 220 11
Q ss_pred hHh----hHHhhccCCCEEEEEEeCCCccc--HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc
Q 030113 74 LRT----SWATYYRGTHAVIVVIDSTDRAR--ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS 147 (183)
Q Consensus 74 ~~~----~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (183)
+.. .....+..+| ++++|=-.+=. -......+..+++ .++|++.++.+... ..-.+++..
T Consensus 81 fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~~~~--~~~l~~i~~------ 146 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSD--LIVIDEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHKRSD--NPFLEEIKR------ 146 (168)
T ss_dssp HHCCCCCCCHHHHHCCH--EEEE---STTCCC-CHHHHHHHHHHC----TTSEEEEE--SS----SCCHHHHHT------
T ss_pred HHHHHHHHHHhhcCCCC--EEEEeccchhhhcCHHHHHHHHHHHc----CCCcEEEEEecCCC--cHHHHHHHh------
Confidence 111 1111123444 77888543311 1223445555554 45888888888731 122233322
Q ss_pred cCCCceEEEEeecccCCCH
Q 030113 148 IKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi 166 (183)
..++.+++++..+.+-+
T Consensus 147 --~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 --RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp --TTTSEEEE--TTTCCCH
T ss_pred --CCCcEEEEeChhHHhhH
Confidence 22345888876665543
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=3.8e-05 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999654
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0005 Score=44.92 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++|.|++|+||||++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 678999999999999988653
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.3e-05 Score=53.01 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-++|+||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999976
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.9e-05 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHhccCCc
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~ 42 (183)
++++||+|||||||++.++|-+.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 57999999999999999987554
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00011 Score=52.67 Aligned_cols=31 Identities=32% Similarity=0.201 Sum_probs=24.1
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhc
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
|......+..+-|+|.|++||||||+++.+.
T Consensus 53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4333334567899999999999999998764
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=7.3e-05 Score=55.30 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
-+++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999987543
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00042 Score=42.07 Aligned_cols=97 Identities=15% Similarity=0.025 Sum_probs=53.2
Q ss_pred cCCCCCHHHHHHHhccCCcccccCcccceeEEEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccH
Q 030113 24 GLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARI 100 (183)
Q Consensus 24 G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 100 (183)
+..|+||||+...+...-.... +....-++. .+..+.++|+|+..... ....+..+|.++++.+.+. .++
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~-~s~ 79 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL-PSI 79 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-HHH
Confidence 6778999998766632211110 000000000 11288999999865432 3356788999999998764 344
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEEEeC
Q 030113 101 SIMKDELFRLLGHEDLQHSVVLIFANK 127 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~vilv~nK 127 (183)
......+..+..........+.+|+|+
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 80 RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 444444444333221113456677775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00015 Score=49.81 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+....+....-.+|+|.|+||+|||+|+.++...
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34444455555579999999999999999988653
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=7.8e-05 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+|+|+|.+|+||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998644
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.52 E-value=6.9e-05 Score=47.11 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|++.|++|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999755
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.51 E-value=7.2e-05 Score=49.56 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=29.1
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~ 135 (183)
|++++|+|+.++.+- ....+...+. ....++|+++|+||+|+.+...
T Consensus 1 DvVl~VvDar~p~~~--~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGC--RCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCC--CCHHHHHHHH-hccCCCCEEEEEehhhcCCHHH
Confidence 789999999876321 1122222211 1113589999999999975433
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00047 Score=52.79 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
++.=||+|+|++||||||+++.++.
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.51 E-value=9.2e-05 Score=46.80 Aligned_cols=25 Identities=36% Similarity=0.256 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
..++++|++|+||||++..++..-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999976644
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00055 Score=43.71 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=57.1
Q ss_pred EEcCCCCCHHHHHHHhccCCcccccCcccceeE-EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccH
Q 030113 22 IVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARI 100 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 100 (183)
.-|.+|+||||+.-.+...-......+.-+... ....-...+.++|+|+... ......+..+|.++++.+.+. .++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-~s~ 81 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-TSI 81 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-hHH
Confidence 457899999999766532211000000000000 0000016789999997432 233466888999999999864 334
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 101 SIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
......+..+.... ...++.+|+|+.+-
T Consensus 82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 82 TDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 33333333332221 34567899999973
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=8.8e-05 Score=47.41 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.|+|+|+.|+|||||+..+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998654
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.3e-05 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|++|+|||||++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999996653
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00011 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..-|+|.|.+|+|||||.+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999653
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0001 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+|+|+|+|||||||+.+.|+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.49 E-value=7.9e-05 Score=51.70 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=23.8
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..-...++++|+|++|||||+|+..++..
T Consensus 8 ~l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 8 SLLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 33456789999999999999998887643
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.48 E-value=9.6e-05 Score=47.10 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 679999999999999999765
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=48.61 Aligned_cols=27 Identities=33% Similarity=0.278 Sum_probs=22.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
+.-.++++|+.|+|||||++.+++-..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 345788999999999999999987643
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0001 Score=46.08 Aligned_cols=21 Identities=38% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988654
|
... |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00011 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++|+|+.|+|||||++.+++-.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3467899999999999999998764
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=8.5e-05 Score=50.24 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
.++|||+|||||||++.+.
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4899999999999998774
|
|
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0015 Score=46.56 Aligned_cols=21 Identities=48% Similarity=0.561 Sum_probs=17.8
Q ss_pred EEEcCCCCCHHHHHHHhccCC
Q 030113 21 IIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 21 ~viG~~~~GKStl~~~l~~~~ 41 (183)
.+.|.-|+|||||+|.++.+.
T Consensus 61 IITGyLGaGKtTLLn~Il~~~ 81 (391)
T KOG2743|consen 61 IITGYLGAGKTTLLNYILTGQ 81 (391)
T ss_pred EEEecccCChHHHHHHHHccC
Confidence 477999999999999997543
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00011 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~ 38 (183)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3457899999999999999975
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00012 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++|+|+.|+|||||++.+.+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445788999999999999998863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00011 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
+|+++|.+|+||||+..+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988654
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0001 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
=-++++|++|||||||+|.+.+-
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcC
Confidence 34679999999999999999764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHhccCCcc
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
++++||+||||||+++.++|-+.+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 579999999999999999876544
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00015 Score=51.72 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..-.|+|.|++|+||||+++.++..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhhh
Confidence 4678999999999999999999753
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00012 Score=50.32 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++++|++|+|||||++.+++-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999998764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.-.++|+|+.|+|||||++.+++..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00017 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.143 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++|+|+.|+|||||++.+++-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0001 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|+|++||||||+++.++..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00014 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+.+-.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998764
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00013 Score=48.87 Aligned_cols=22 Identities=36% Similarity=0.289 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~ 38 (183)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999997
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00018 Score=49.20 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=22.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+.+..-|+|+|++|+|||||++++...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345667788999999999999999643
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00012 Score=48.37 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+|+|++|+||||+.+.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00012 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++++|++|+|||||++.+++-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00012 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
-++|+||.|+|||||+..+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999883
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00014 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++|+|+.|+|||||++.+++-.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999998764
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00014 Score=49.92 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.-.++|+|+.|+|||||++.+++..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998764
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00014 Score=49.78 Aligned_cols=26 Identities=31% Similarity=0.195 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
+.=.++|+|+.|+|||||++.+++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33457899999999999999998864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00011 Score=49.83 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00013 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-|+|+|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
|
|
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00024 Score=51.31 Aligned_cols=33 Identities=27% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHhhhcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 7 KFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 7 ~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+........+-|+|.|++||||||+++.+..
T Consensus 76 ~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 76 QFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444556789999999999999999988854
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=49.76 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
+.-.++++|+.|+|||||++.+++..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33467899999999999999998764
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 183 | ||||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 5e-61 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 6e-61 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 6e-61 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-58 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-58 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 5e-54 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 6e-53 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 2e-52 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 5e-52 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 9e-52 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 2e-51 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 1e-50 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 6e-50 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 1e-49 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 2e-49 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 2e-49 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 7e-49 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 2e-47 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 3e-47 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 2e-46 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 2e-46 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 4e-46 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 4e-46 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 6e-46 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 5e-45 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 5e-45 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 3e-44 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 4e-44 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 1e-43 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 2e-43 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 2e-43 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 3e-42 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 4e-37 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 2e-36 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 2e-36 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 9e-36 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 4e-35 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 7e-34 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 8e-34 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 1e-33 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 8e-33 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 1e-32 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 8e-32 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 7e-25 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 6e-23 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 1e-22 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 6e-22 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 7e-19 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 8e-19 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 1e-18 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 5e-17 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 7e-17 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 7e-17 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 2e-10 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 2e-10 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 2e-10 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 3e-10 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 3e-10 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 3e-10 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 3e-10 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 4e-10 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 4e-10 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 4e-10 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 5e-10 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 5e-10 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 8e-10 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 8e-10 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 1e-09 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 2e-09 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 1e-08 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 1e-08 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 1e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 2e-08 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 2e-08 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 2e-08 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 3e-08 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 3e-08 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 3e-08 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 3e-08 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 3e-08 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 4e-08 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 4e-08 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 4e-08 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 5e-08 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 8e-08 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 1e-07 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 1e-07 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 2e-07 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 2e-07 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 3e-07 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 3e-07 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 4e-07 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 4e-07 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 4e-07 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 4e-07 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 4e-07 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 4e-07 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 4e-07 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 5e-07 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 7e-07 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 7e-07 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 7e-07 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 7e-07 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 7e-07 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 2e-06 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 2e-06 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 2e-06 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 2e-06 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-06 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 3e-06 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 3e-06 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 3e-06 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 3e-06 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 3e-06 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 3e-06 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 3e-06 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 3e-06 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 4e-06 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 4e-06 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 4e-06 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 5e-06 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 5e-06 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 5e-06 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 5e-06 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 7e-06 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 8e-06 | ||
| 4djt_A | 218 | Crystal Structure Of A Nuclear Gtp-Binding Protein | 8e-06 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 9e-06 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 9e-06 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 9e-06 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 9e-06 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 1e-05 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 1e-05 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 1e-05 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 2e-05 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 2e-05 | ||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 2e-05 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 2e-05 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 2e-05 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 2e-05 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 2e-05 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 3e-05 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 3e-05 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 4e-05 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 4e-05 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 4e-05 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 5e-05 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 7e-05 | ||
| 4fid_A | 340 | Crystal Structure Of A Heterotrimeric G-Protein Sub | 8e-05 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 1e-04 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 1e-04 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 1e-04 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 1e-04 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 1e-04 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 1e-04 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 1e-04 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 1e-04 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 1e-04 | ||
| 3clv_A | 208 | Crystal Structure Of Rab5a From Plasmodium Falcipar | 1e-04 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 2e-04 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 2e-04 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 2e-04 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 2e-04 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 2e-04 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 2e-04 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 4e-04 | ||
| 1xzp_A | 482 | Structure Of The Gtp-Binding Protein Trme From Ther | 5e-04 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 7e-04 | ||
| 1fqj_A | 325 | Crystal Structure Of The Heterotrimeric Complex Of | 8e-04 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 9e-04 |
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Length = 482 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 289 bits (743), Expect = e-101
Identities = 107/177 (60%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
RF WD+GGQE LR+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+LIFANKQD+K+ MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = e-101
Identities = 74/180 (41%), Positives = 114/180 (63%), Gaps = 1/180 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L++ M ++ +++++GLDNAGKTT L K + +V T PT+G N++ L ++
Sbjct: 3 MG-LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 61
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
+ WDVGGQ+ LR+ W Y+ T +I V+DS DR R+ + EL LL E L +
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+LIFANKQDL A++ I +AL L SI++H W IQ CSA+TG+ L+ G++W+ ++ +
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = e-101
Identities = 91/184 (49%), Positives = 127/184 (69%), Gaps = 3/184 (1%)
Query: 1 MGALVSKFW---FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELV 57
MGA ++ +L + +++++GLDNAGKT+ LY+LHLG+VVTT PTVG N+E L
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 58 YKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQ 117
YKNI FE WD+GGQ +R W Y+ T AVI V+DSTDR R+ + K EL+ LL ++L+
Sbjct: 63 YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 118 HSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
S++LIFANKQDL DA + AEI + L + SI N W I S+ TGDGLV+G++W+ +R+
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Query: 178 TGKA 181
+
Sbjct: 183 REQG 186
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = e-100
Identities = 82/178 (46%), Positives = 119/178 (66%), Gaps = 1/178 (0%)
Query: 1 MGALVSKFWFMLFPG-KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYK 59
MG + S + L+ K+ +I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE L YK
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS 119
N++ WD+GGQ +R W YY T AVI V+DSTD+ R+S EL +L E+LQ +
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+L+FANKQD A++ +E++ L+L +K+ W I A SA+ G+G+ +GL+W+ +
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 283 bits (726), Expect = 3e-99
Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 1/178 (0%)
Query: 4 LVSKFW-FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIR 62
L+S P ++ +I+++GLDNAGKTT L +L ++ PT G N++ + + +
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61
Query: 63 FEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL 122
WD+GGQ ++R W +Y+ T +I VIDS DR R EL LL E L VL
Sbjct: 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL 121
Query: 123 IFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
IFANKQDL A +EI + L+LH+I++ W IQ+CSALTG+G+ DG+ W+ + V K
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 281 bits (722), Expect = 1e-98
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 7/184 (3%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
G + K K++ +GLDNAGKTT L+ L + T PT EEL N
Sbjct: 7 FGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I+F +D+GG + R W Y+ + ++ ++D+ D R + EL L +L+
Sbjct: 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP 126
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKN-------HDWHIQACSALTGDGLVDGLEWI 173
+I NK D +A++ AE+ AL L + + CS + +G ++ +W+
Sbjct: 127 FVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186
Query: 174 SQRV 177
SQ +
Sbjct: 187 SQYI 190
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 1e-98
Identities = 77/169 (45%), Positives = 115/169 (68%)
Query: 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQ 71
++ +I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE + YKN++F+ WD+GG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
+R W YY T AVI V+DS DR RI I K EL +L E+L+ +++++FANKQD++
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
AMT +E+ ++L L ++K+ W I SA G GL + +EW+ + + +
Sbjct: 122 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 281 bits (722), Expect = 2e-98
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
Query: 1 MGA------LVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNV 53
MG+ S ++ ++ +VGL +GKTT + + G+ PTVG N+
Sbjct: 1 MGSSHHHHHHSSGLV-PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM 59
Query: 54 EELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGH 113
++ N+ + WD+GGQ R R+ W Y RG A++ ++D+ D+ +I K+EL LL
Sbjct: 60 RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 119
Query: 114 EDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173
LQ VL+ NK+DL A+ E+ + ++L +I++ + + S D + L+W+
Sbjct: 120 PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
Query: 174 SQRVTGK 180
Q +
Sbjct: 180 IQHSKSR 186
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 278 bits (713), Expect = 4e-97
Identities = 85/180 (47%), Positives = 124/180 (68%), Gaps = 4/180 (2%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
G+L S+ +F K +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKN
Sbjct: 17 RGSLFSR----IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 72
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+++R W Y++ T +I V+DS DR R+ DEL ++L ++L+ +V
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQD+ +AM +E+TD L L +++ W++QA A G GL DGL+W+S ++ +
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 5e-97
Identities = 101/162 (62%), Positives = 128/162 (79%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
+++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N RF WD+GGQE LR
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ + +LIFANKQD+K+ MT
Sbjct: 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 139
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 140 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 1e-95
Identities = 86/162 (53%), Positives = 123/162 (75%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F WDVGGQ+++R W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
Y++ T +I V+DS DR R++ ++EL R+L ++L+ +V+L+FANKQDL +AM AE
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
ITD L LHS+++ +W+IQA A +GDGL +GL+W+S ++ +
Sbjct: 122 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 1e-95
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 20/197 (10%)
Query: 1 MGALVSKFW--------FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN 52
M + + F+ K K++ +GLDNAGKTT L+ L + PT+
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 53 VEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLG 112
EEL + F +D+GG + R W Y + ++ ++D D R+ K+EL L+
Sbjct: 61 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 113 HEDLQHSVVLIFANKQDLKDAMTPAEITDAL------------SLHSIKNHDWHIQACSA 160
E + + +LI NK D +A++ + + SL + + CS
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 161 LTGDGLVDGLEWISQRV 177
L G +G W++Q +
Sbjct: 181 LKRQGYGEGFRWMAQYI 197
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 5e-92
Identities = 65/166 (39%), Positives = 103/166 (62%), Gaps = 4/166 (2%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV--VTTHPTVGSNVEELVYKNIRFEAWDVGGQER 73
K+ ++ +GLDN+GKTT + KL PT+G ++E+ ++ F +D+ GQ R
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS--VVLIFANKQDLK 131
R W YY+ A+I VIDS+DR R+ + K+EL LL H D++H +L FANK DL+
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
DA+T +++ L L +IK+ WHI A A+ G+GL +G++W+ ++
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 3e-88
Identities = 89/174 (51%), Positives = 127/174 (72%)
Query: 7 KFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAW 66
LF K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F W
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 214
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
DVGGQ+++R W Y++ T +I V+DS DR R++ ++EL R+L ++L+ +V+L+FAN
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 274
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
KQDL +AM AEITD L LHS+++ +W+IQA A +GDGL +GL+W+S ++ +
Sbjct: 275 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 3e-68
Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 7/161 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIR---FEAWDVGGQE 72
++ VGL ++GKT +L G+ T ++ + N R D+ G E
Sbjct: 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65
Query: 73 RLRTS-WATYYRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSV--VLIFANKQ 128
LR + AV+ V+DS R + + + L+++L + +LI NKQ
Sbjct: 66 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125
Query: 129 DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169
D+ A + I L A S L
Sbjct: 126 DIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPA 166
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 4e-62
Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 26/183 (14%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLH-------LGEVVT----THPTVGSN-----VEELVYK 59
++KI+ G +GKTT L ++ GE+V+ T+ + + E+
Sbjct: 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLL-----GHE 114
RF + V GQ S RG ++ V DS R+ + + +
Sbjct: 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPN-RLRANAESMRNMRENLAEYGL 131
Query: 115 DLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
L ++I NK+DL DA+ + + + + A G G+ + L+ +S
Sbjct: 132 TLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG----KFPVLEAVATEGKGVFETLKEVS 187
Query: 175 QRV 177
+ V
Sbjct: 188 RLV 190
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 5e-54
Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 13/185 (7%)
Query: 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWD 67
+ III G N+GKT+ L L V T + + Y D
Sbjct: 3 HMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVD 61
Query: 68 VGGQERLRTSWATYY----RGTHAVIVVIDS-TDRARISIMKDELFRLLGHEDLQHSV-- 120
G +LR + Y + +I ++DS D +++ + L +L +
Sbjct: 62 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 121
Query: 121 -VLIFANKQDLKDAMTPAEITDALS--LHSIK-NHDWHIQACSALTGDGLVDGLEWISQR 176
+LI NK +L A P++I DAL + + + + +
Sbjct: 122 DILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE-DYAENTLDVL 180
Query: 177 VTGKA 181
+
Sbjct: 181 QSTDG 185
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 7e-53
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
III G N+GKT+ L L V T + + Y D G +LR
Sbjct: 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLR 105
Query: 76 TSWATYYR----GTHAVIVVIDS-TDRARISIMKDELFRLLGHEDLQHSV---VLIFANK 127
+ Y + +I ++DS D +++ + L +L + +LI NK
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165
Query: 128 QDLKDAMTPAEITDALS--LHSIKN 150
+L A P++I DAL + +
Sbjct: 166 SELFTARPPSKIKDALESEIQKVIE 190
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 4e-38
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 57 VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL 116
++ G + + I V ++ R +DE ++ D
Sbjct: 98 MFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEW-QDEFSHIMAMTDP 156
Query: 117 QHS-----VVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171
++++ Q M + L L+ + NH W +Q A T G ++G+E
Sbjct: 157 AFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIE 215
Query: 172 WISQRVTGKAP 182
WI + V K
Sbjct: 216 WILEEVESKRA 226
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-35
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 16/165 (9%)
Query: 12 LFPGKDYKIIIVGLDNAGKTT----TLYKLHLGEVVTTHPTVGSNVEELVYK-NIRFEAW 66
F G +I+++GL +GK++ +K+ E + T +++ + F+ W
Sbjct: 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIW 74
Query: 67 DVGGQERLRTSWA---TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
D GQ +RGT A+I VID+ D ++ + + ++ +
Sbjct: 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEV 134
Query: 124 FANKQDLKDAMTPAE--------ITDALSLHSIKNHDWHIQACSA 160
F +K D E D L+ ++ S
Sbjct: 135 FIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSI 179
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 9e-33
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS-----VV 121
G + + I V ++ R +DE ++ D ++
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEW-QDEFSHIMAMTDPAFGSSGRPLL 251
Query: 122 LIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181
++ Q M + L L+ + NH W +Q A T G ++G+EWI + V K
Sbjct: 252 VLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310
Query: 182 P 182
Sbjct: 311 A 311
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 5e-26
Identities = 23/181 (12%), Positives = 51/181 (28%), Gaps = 18/181 (9%)
Query: 19 KIIIVGLDNAGKTT----TLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQER 73
K++++G +GK++ + T+ L + N+ WD GGQ+
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 74 -----LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLL-GHEDLQHSVVLIFANK 127
++ +I V D + ++ L + + + + +K
Sbjct: 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124
Query: 128 QDLKDAMTPAEITDALS------LHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181
DL E+ + + S + L I +
Sbjct: 125 MDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183
Query: 182 P 182
Sbjct: 184 S 184
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 1e-15
Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 20 IIIVGLDNAGKTT----TLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++++G+ GK++ + + + + T ++E I ++ GQ
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60
Query: 76 TSWAT---YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
++ A++ VIDS D +I + ++ + + +K D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 5e-15
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 32/178 (17%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+K+++VG GKTT + + GE + T+G VE I+F WD G
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLG--HEDLQHS----VVLIF 124
QE+ YY I++ D T R ++ + H DL +++
Sbjct: 74 QEKFGGLRDGYYIQAQCAIIMFDVTSR--------VTYKNVPNWHRDLVRVCENIPIVLC 125
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQAC--SALTGDGLVDGLEWISQRVTGK 180
NK D+KD A+ ++ H KN +Q SA + W+++++ G
Sbjct: 126 GNKVDIKDRKVKAK---SIVFHRKKN----LQYYDISAKSNYNFEKPFLWLARKLIGD 176
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-14
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGE---VVTTHPTVGS-------NVEELVYKNIRFEAWD 67
K++IVG +GKTT L +L + + TVG + + +++ WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDR-ARISIMKDELFRLLGHEDLQHSVVLIFAN 126
G+E ++ + + V D + A + MK LF + S V++
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS--SSPVILVGT 120
Query: 127 KQDLKD 132
D+ D
Sbjct: 121 HLDVSD 126
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 7e-14
Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 21/182 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVY------------KN 60
++ K+ ++G AGKT+ L +L T G NV K
Sbjct: 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKE 97
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD GGQE + S + + ++++DS + + + G S
Sbjct: 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGG-----KSP 152
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
V++ NK D + I + S GDG+ + + V
Sbjct: 153 VIVVMNKIDENPSY---NIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209
Query: 181 AP 182
Sbjct: 210 DS 211
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-13
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+K II+G GK+ L++ + + T+G VE E+ + I+ + WD G
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--VEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER R +YYRG ++V D T R+ + + L + ++LI NK DL
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI-GNKADL 132
Query: 131 KD 132
+
Sbjct: 133 EA 134
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 5e-13
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
DY K++++G GK+ L + E T+G VE ++ K I+ + WD
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDGKTIKAQIWD 60
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER R + YYRG ++V D ++ L L H D + V+++ NK
Sbjct: 61 TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNK 119
Query: 128 QDLKD 132
DL+
Sbjct: 120 SDLRH 124
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 8e-13
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY-----KNIRFEAWDVGGQ 71
YKI ++G GKTT + ++ G + TVG+ + + I+F WD GQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E+ YY G I+ D T R + + + +V+ ANK D+K
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVC-ANKIDIK 130
Query: 132 D 132
+
Sbjct: 131 N 131
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-12
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDV 68
P + +K++ +G + GKT+ + + T+ T+G S L + +R + WD
Sbjct: 13 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 72
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
G ER R+ +Y R + +VV D T+ + + ++++ NK
Sbjct: 73 AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 131
Query: 129 DLKD 132
DL D
Sbjct: 132 DLAD 135
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-12
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+KI+++G GK+ L + E T+G VE E+ K I+ + WD G
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG--VEFATRTLEIEGKRIKAQIWDTAG 71
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER R + YYRG ++V D + + L L + D + V + NK DL
Sbjct: 72 QERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGNKSDL 130
Query: 131 KD 132
Sbjct: 131 AH 132
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-12
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+K++++G GKT L + E T+G VE L ++ + WD G
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG--VEFSTRTVMLGTAAVKAQIWDTAG 83
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
ER R + YYRG ++V D T ++++ L L H + V+L+ NK DL
Sbjct: 84 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDL 142
Query: 131 KD 132
Sbjct: 143 SQ 144
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-12
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 12/128 (9%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFE 64
P Y K II+G GK+ L + H T+G VE + K I+ +
Sbjct: 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMVNIDGKQIKLQ 73
Query: 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124
WD GQE R+ +YYRG ++V D T R + + L H ++LI
Sbjct: 74 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI- 132
Query: 125 ANKQDLKD 132
NK DL+
Sbjct: 133 GNKSDLES 140
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-12
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
KI+I+G GK++ L + T+G V+ + + WD G
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIG--VDFKVKTISVDGNKAKLAIWDTAG 73
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER RT +YYRG VI+V D T R + + L L + V ++ NK D
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165
++ + + H SA T DG
Sbjct: 134 ENREVDRNEGLKFA----RKHSMLFIEASAKTCDG 164
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-12
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGS-----NVEELVYKNIRFEA 65
K K+II+G GKT+ +++ + + T+G+ V K +
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62
Query: 66 WDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVL 122
WD GQER ++ +YRG ++V D T+ + I +DE + +
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122
Query: 123 IFANKQDLKDA 133
I NK D +++
Sbjct: 123 ILGNKIDAEES 133
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-12
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+KI+++G GKT + + G T+G V+ E+ + ++ + WD G
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG--VDFMIKTVEINGEKVKLQIWDTAG 84
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER R+ +YYR +A+I+ D T + + L + + + ++ NK DL
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDL 143
Query: 131 KD 132
+
Sbjct: 144 AE 145
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-12
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFE 64
K K+II+G GKT+ + + + + T+G + + + + +
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG--ADFLTKEVMVDDRLVTMQ 60
Query: 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVV 121
WD GQER ++ +YRG ++V D T + +DE D ++
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 122 LIFANKQDLKD 132
++ NK DL++
Sbjct: 121 VVLGNKIDLEN 131
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-12
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
DY K++++G GK+ L + E T+G VE ++ K I+ + WD
Sbjct: 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDGKTIKAQIWD 84
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
G ER R + YYRG ++V D ++ L L H D ++L+ NK
Sbjct: 85 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV-GNK 143
Query: 128 QDLKD 132
DL+
Sbjct: 144 SDLRH 148
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-12
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+K++++G GK+ L + ++ T+G V+ EL K I+ + WD G
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG--VDFKIRTIELDGKTIKLQIWDTAG 91
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER RT ++YYRG H +IVV D TD+ + +K L + + + +L+ NK DL
Sbjct: 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GNKCDL 150
Query: 131 KD 132
Sbjct: 151 TT 152
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-12
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
D+ K +++G GK+ L++ + T+G VE + K ++ + WD
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG--VEFGSRVVNVGGKTVKLQIWD 80
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER R+ +YYRG ++V D T R + + L + VV++ NK
Sbjct: 81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNK 139
Query: 128 QDLKD 132
+DL
Sbjct: 140 KDLDP 144
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-12
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 14 PGKDY----KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIR 62
P KII++G N GKT Y+ G T+G V+ ++ + I+
Sbjct: 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG--VDFRERAVDIDGERIK 70
Query: 63 FEAWDVGGQERLRTSWAT-YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
+ WD GQER R S YYR HAV+ V D T+ A + + H
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130
Query: 122 LIFANKQDLKD 132
++ NK DL+
Sbjct: 131 ILVGNKCDLRS 141
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-12
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
DY K++++G GKT L++ +T T+G ++ EL K I+ + WD
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG--IDFKIRTIELDGKRIKLQIWD 63
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER RT YYRG +++V D T+ +++ + + H +I NK
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNK 122
Query: 128 QDLKD 132
D+ D
Sbjct: 123 CDVND 127
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-12
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
D KI+++G GK+ L + + + T+G ++ ++ K ++ + WD
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG--IDFKIKTVDINGKKVKLQIWD 58
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER RT YYRG +I+V D TD + +K + H + + +L+ NK
Sbjct: 59 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNK 117
Query: 128 QDLKDAMTPAE 138
D++ + A+
Sbjct: 118 SDMETRVVTAD 128
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-12
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+K+++VG + GKT + + G T+G V+ E+ K ++ + WD G
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG--VDFTMKTLEIQGKRVKLQIWDTAG 87
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER RT +YYR + I+ D T R+ + + + + +LI NK DL
Sbjct: 88 QERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI-GNKSDL 146
Query: 131 KD 132
+
Sbjct: 147 SE 148
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-12
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
DY K++++G + GKT+ L++ TVG ++ K I+ + WD
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTVYRHDKRIKLQIWD 77
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER RT YYRG +++ D ++ + ++D ++ + ++ V++ NK
Sbjct: 78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW-DNAQVILVGNK 136
Query: 128 QDLKD 132
DL+D
Sbjct: 137 CDLED 141
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-12
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
DY K++++G GK+ L + + T+G V+ EL K ++ + WD
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG--VDFKIKTVELDGKTVKLQIWD 63
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER RT ++YYRG+H +I+V D TD+ + +K L + + +L+ NK
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNK 122
Query: 128 QDLKD 132
DLKD
Sbjct: 123 CDLKD 127
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 4e-12
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
YKI++ G GK++ L +L E T+G V+ + + + WD G
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG--VDFQMKTLIVDGERTVLQLWDTAG 86
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER R+ +Y+R V+++ D T +++ + + + +++ NK D+
Sbjct: 87 QERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADI 145
Query: 131 KDAMTPAE 138
+D
Sbjct: 146 RDTAATEG 153
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-12
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+K +++G GK+ L++ + T+G VE + K ++ + WD G
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG--VEFGSKIINVGGKYVKLQIWDTAG 68
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER R+ +YYRG ++V D T R + + + L Q+ V+++ NK+DL
Sbjct: 69 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDL 127
Query: 131 KD 132
Sbjct: 128 DA 129
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-12
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+K++++G GK+ L + ++ T+G V+ EL K I+ + WD G
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG--VDFKIRTIELDGKTIKLQIWDTAG 74
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER RT ++YYRG H +IVV D TD+ + +K L + + + +L+ NK DL
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GNKCDL 133
Query: 131 KD 132
Sbjct: 134 TT 135
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-12
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
DY K++I+G + GKT+ L++ TVG ++ K ++ + WD
Sbjct: 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG--IDFKVKTVYRHEKRVKLQIWD 78
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER RT YYRG I++ D T+ + ++D ++ + ++ V++ NK
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGNK 137
Query: 128 QDLKD 132
D+++
Sbjct: 138 CDMEE 142
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 6e-12
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
DY KI+I+G + GKT+ L++ TVG ++ K I+ + WD
Sbjct: 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTIYRNDKRIKLQIWD 63
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
G ER RT YYRG I++ D T+ + ++D ++ + ++ VL+ NK
Sbjct: 64 TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGNK 122
Query: 128 QDLKD 132
D++D
Sbjct: 123 CDMED 127
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 7e-12
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELV-------YKNIRFEAWDVG 69
KI+++G +GKT+ + T+G ++ + N+ + WD+G
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRITLPGNLNVTLQIWDIG 64
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQ Y G V++V D T+ + + ++ + Q V L+ N
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GN 123
Query: 127 KQDLKD 132
K DL+
Sbjct: 124 KIDLEH 129
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 7e-12
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDVGGQE 72
+K++ +G + GKT+ + + T+ T+G S L + +R + WD GQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R+ +Y R + +VV D T+ + + ++L+ NK DL D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV-GNKTDLSD 133
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 7e-12
Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 10/155 (6%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
K++++G GK++ + + + PT+G + ++FE WD G
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG--AAFLTQRVTINEHTVKFEIWDTAG 61
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER + YYR A +VV D T + + L + ++ + NK D
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDX 120
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165
++ + SA TG+
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-11
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
D+ ++II+G GKT+ + + TVG V+ EL K IR + WD
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG--VDFKIKTVELRGKKIRLQIWD 81
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER + + YYR +I+V D T + + + + + ++L+ NK
Sbjct: 82 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLV-GNK 140
Query: 128 QDLKD 132
D +
Sbjct: 141 LDCET 145
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-11
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 18/131 (13%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFE 64
K K++++G AGK++ + + + V T+G + ++FE
Sbjct: 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG--AAFFSQTLAVNDATVKFE 64
Query: 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVV 121
WD GQER + YYRG A I+V D T++A R EL + G+ ++ V+
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL-QAQGNPNM---VM 120
Query: 122 LIFANKQDLKD 132
+ NK DL D
Sbjct: 121 ALAGNKSDLLD 131
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-11
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
D KI+++G GK+ L + + + T+G ++ ++ K ++ + WD
Sbjct: 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG--IDFKIKTVDINGKKVKLQLWD 75
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER RT YYRG +I+V D TD + +K + H + + +L+ NK
Sbjct: 76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNK 134
Query: 128 QDLKDAMTPAE 138
D++ + A+
Sbjct: 135 SDMETRVVTAD 145
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-11
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAW 66
++ K+ ++G GK++ +++ PT+G + + +F W
Sbjct: 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG--ASFMTKTVQYQNELHKFLIW 60
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
D G ER R YYRG+ A I+V D T S +K+ + L H VV I N
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGN 119
Query: 127 KQDLKD 132
K DL D
Sbjct: 120 KCDLTD 125
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 1e-11
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+K++++G GKT+ + + + H T+G + K + WD G
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG--ASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER YYR ++ I+V D TD +K+ + L + I NK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDL 123
Query: 131 KD 132
+
Sbjct: 124 EK 125
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-11
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
K+ ++G GK++ + + PT+G + +F WD G
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG--ASFMTKTVPCGNELHKFLIWDTAG 81
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER + YYRG+ A ++V D T + +K + L H ++ V+ I NK DL
Sbjct: 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKCDL 140
Query: 131 KD 132
D
Sbjct: 141 SD 142
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-11
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG--------------SNVEELVYK 59
DY K + +G GKT+ LY+ G+ + TVG + +
Sbjct: 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS 119
I + WD G ER R+ ++R +++ D T+ +++ + +L H ++
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 120 VVLIFANKQDLKD 132
+++ NK DL+D
Sbjct: 129 DIVLCGNKSDLED 141
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-11
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWDVGG 70
+K++++G GK++ + + G+ T+G L ++FE WD G
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG--AAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMK---DELFRLLGHEDLQHSVVLIFANK 127
QER + YYRG A IVV D T+ + K EL + ++ V+ + NK
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL-QRQASPNI---VIALSGNK 120
Query: 128 QDLKD 132
DL +
Sbjct: 121 ADLAN 125
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-11
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 15 GKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEA 65
GK K+I++G GK++ + + + T T+G VE E+ + +
Sbjct: 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEVDGHFVTMQI 60
Query: 66 WDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVL 122
WD GQER R+ +YRG+ ++ D +S K E ++ + +
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 123 IFANKQDLKD 132
I NK D+ +
Sbjct: 121 ILGNKIDISE 130
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-11
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEAWD 67
D+ K++I+G GK++ L + ++ T+G V+ E+ + ++ + WD
Sbjct: 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--VDFKIRTVEINGEKVKLQIWD 64
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER RT +TYYRGTH VIVV D T +K L + + D ++ NK
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD--DVCRILVGNK 122
Query: 128 QDLKD 132
D +
Sbjct: 123 NDDPE 127
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-11
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSNVE------ELVYKNIRFEAW 66
D K+++VG GKT L + G + TVG ++ ++ ++ + W
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG--IDFRNKVLDVDGVKVKLQMW 65
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
D GQER R+ YYR HA++++ D T++A ++ L + + +++ N
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGN 124
Query: 127 KQDLKD 132
K D
Sbjct: 125 KVDSAH 130
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-11
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG---SNVEELVYKNIRFEAWDVG 69
K KI I+G + GK++ + G+ V ++ PT+ + + + + + D
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTA 62
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQ+ TY + I+V T I ++ +L ++G + ++L+ N
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP--IMLV-GN 119
Query: 127 KQDLKD 132
K+DL
Sbjct: 120 KKDLHM 125
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 3e-11
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 15 GKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE------ELVYKNIRFEA 65
G + K+++VG GK++ + + G + T+G V+ ++ +++R
Sbjct: 1 GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG--VDFLERQIQVNDEDVRLML 58
Query: 66 WDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA 125
WD GQE YYRG A ++V +TDR + +++ +
Sbjct: 59 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQ 116
Query: 126 NKQDLKD 132
NK DL D
Sbjct: 117 NKIDLLD 123
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 4e-11
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWDVG 69
+YK+++VG GK+ +L V + PT+ + + + + D
Sbjct: 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 77
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQE Y R + V + I++ ++++ R+ +D+ +VL+ N
Sbjct: 78 GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP--MVLV-GN 134
Query: 127 KQDLKD 132
K DL
Sbjct: 135 KCDLPT 140
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 4e-11
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 17 DY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG--------------SNVEELVYK 59
DY K++ +G GKTT LY+ + TVG N
Sbjct: 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS 119
+ + WD GQER R+ ++R +++ D T + +++ + +L + ++
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 120 VVLIFANKQDLKD 132
+++ NK DL D
Sbjct: 143 DIVLIGNKADLPD 155
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 6e-11
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG-SNVEELVY--KNIRFEAWDVG 69
P + +K+++VG GK+ + V+ + PT+ S + R + D
Sbjct: 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTA 65
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQE Y R H ++V DR + + ++ R+ +D V++ N
Sbjct: 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF---PVVLVGN 122
Query: 127 KQDLKD 132
K DL+
Sbjct: 123 KADLES 128
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 7e-11
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWDVGGQ 71
+YK+++VG D GK+ +L V + PT+ + + + + D GQ
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
E Y R + V + I ++++ R+ ED+ +VL+ NK
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP--MVLV-GNKC 119
Query: 129 DLKD 132
DL
Sbjct: 120 DLPS 123
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 9e-11
Identities = 44/173 (25%), Positives = 61/173 (35%), Gaps = 21/173 (12%)
Query: 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAW 66
+ F G+ K ++VG GKT L + PTV N V K + W
Sbjct: 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 83
Query: 67 DVGGQE---RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
D GQE RLR Y T ++ A ++ + + + H ++L+
Sbjct: 84 DTAGQEDYDRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140
Query: 124 FANKQDLKDAMTPAEITDALSLHSIKNHD-----WHIQA-----CSALTGDGL 166
K DL+D E L I I A CSALT GL
Sbjct: 141 -GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-10
Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 14/134 (10%)
Query: 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY--KNIR 62
S + F G + K+ IVG ++GK+ +++ G V P G +E+V ++
Sbjct: 9 SGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYL 68
Query: 63 FEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHS 119
D GG L+ + AV+ V D + L ++
Sbjct: 69 LLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-- 121
Query: 120 VVLIFANKQDLKDA 133
+VL+ + + A
Sbjct: 122 MVLV-GTQDAISAA 134
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-10
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 10/126 (7%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG-SNVEELVY--KNIRFEAWDVG 69
YK+++VG GK+ + V + PT+ S ++ + + D
Sbjct: 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTA 74
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQE Y R ++V TD+A + + R+ E ++L+ AN
Sbjct: 75 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP--MILV-AN 131
Query: 127 KQDLKD 132
K DL
Sbjct: 132 KVDLMH 137
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-10
Identities = 17/127 (13%), Positives = 41/127 (32%), Gaps = 18/127 (14%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS------NVEELVYKNIRFEAWDVG 69
+ ++ ++G +GK++ +++ G T V+ + +
Sbjct: 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDG---QTHLVLIREEA 62
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLI-FA 125
G + + AVI V D +S + +L L G ++ L+
Sbjct: 63 GAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
Query: 126 NKQDLKD 132
++
Sbjct: 118 DRISASS 124
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-10
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 19/135 (14%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTL--YKLHLGEVVTTH-PTVGSNVE------ELVYKNIR 62
K+ +VG GK+ + + + + + T G VE + +
Sbjct: 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG--VEVVVAPVTIPDTTVS 72
Query: 63 FEAW--DVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQ 117
E + D G + + + Y+ G + I+V D + + L +
Sbjct: 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132
Query: 118 HSVVLIFANKQDLKD 132
VL+ ANK DL
Sbjct: 133 LRAVLV-ANKTDLPP 146
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-10
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQ 71
+ K++I+G GKT+ ++ GE + PTV + ++V D GQ
Sbjct: 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
+ ++ G H ++V T I + +L G + VVL+ NK
Sbjct: 83 DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP--VVLV-GNKA 139
Query: 129 DLKD 132
DL
Sbjct: 140 DLSP 143
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 4e-10
Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG---SNVEELVYKNIRFEAWDVGGQ 71
++YK++++G GK+ + G V + PT+ E+ + E D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
E+ Y + +V T ++ + +++++ R+ ED+ ++L+ NK
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP--MILV-GNKC 118
Query: 129 DLKD 132
DL+D
Sbjct: 119 DLED 122
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 4e-10
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG-SNVEELVYKN--IRFEAWDVGGQ 71
++YK++++G GK+ + G + + PT+ +E+ + E D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
E+ + Y + I+V ++ I M+D++ R+ +E + V+L+ NK
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP--VILV-GNKV 118
Query: 129 DLKD 132
DL+
Sbjct: 119 DLES 122
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 4e-10
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG---SNVEELVYKNIRFEAWDVG 69
+ K+ I G GK+ + + + + PT+ + + + + E D
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTA 84
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQE + R ++V D TDR + +K+ L + +++ +++ N
Sbjct: 85 GQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV---TLILVGN 140
Query: 127 KQDLKD 132
K DL
Sbjct: 141 KADLDH 146
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 5e-10
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWDVGGQ 71
+YK+++VG GK+ +L V PT+ + + + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
E Y R + V + I ++++ R+ +D+ +VL+ NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP--MVLV-GNKS 118
Query: 129 DLKD 132
DL
Sbjct: 119 DLAA 122
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 6e-10
Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 29/169 (17%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQE-- 72
K+++VG GKT L E + PTV N + K + WD GQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 73 -RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS----VVLIFANK 127
RLR Y T +++ + + ++ E ++L+ ANK
Sbjct: 87 DRLRPL---SYPDTDVILMCFSVDSPDSLENIPEKWV----PEVKHFCPNVPIILV-ANK 138
Query: 128 QDLKDAMTPAEITDALSLHSIKNHDWH-----IQA-----CSALTGDGL 166
+DL+ + ++ D IQA CSA T +G+
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGV 187
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-09
Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 9/130 (6%)
Query: 15 GKDYKIIIVGLDN------AGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDV 68
G + +V L++ + + + T N NI+F+ WD
Sbjct: 41 GASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDT 100
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
GQER + YYRG IVV D ++ + K + +L + ++++ ANK
Sbjct: 101 AGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNY---IIILVANKI 157
Query: 129 DLKDAMTPAE 138
D
Sbjct: 158 DKNKFQVDIL 167
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-09
Identities = 39/164 (23%), Positives = 54/164 (32%), Gaps = 15/164 (9%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQERL 74
K ++VG GKT L + PTV N V K + WD GQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134
Y T ++ A ++ + + + H ++L+ K DL+D
Sbjct: 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV-GTKLDLRDDK 125
Query: 135 TPAEITDALSLHSIKNHD-----WHIQA-----CSALTGDGLVD 168
E L I I A CSALT GL
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 169
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-09
Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 29/169 (17%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWDVGGQE-- 72
K++IVG GKT L + + PTV N E+ K + WD GQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 73 -RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS----VVLIFANK 127
RLR Y T +++ + + ++ E ++L+ NK
Sbjct: 87 DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT----PEVKHFCPNVPIILV-GNK 138
Query: 128 QDLKDAMTPAEITDALSLHSIKNHDWH-----IQA-----CSALTGDGL 166
+DL+ + +++ + I A CSA T +G+
Sbjct: 139 KDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGV 187
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-09
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 21/170 (12%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVG 69
G+ K ++VG GKT+ + T + PT N +V + +R + D
Sbjct: 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76
Query: 70 GQE---RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQ+ +LR Y T ++ + + ++ + + ++L+
Sbjct: 77 GQDEFDKLRP---LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILV-GT 132
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHD-----WHIQA-----CSALTGDGL 166
+ DL++ + D + I+A CSALT L
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNL 182
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-09
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG---SNVEELVYKNIRFEAWDVGGQ 71
+K+I+VG GK+ + E V + PT L + ++ + D GQ
Sbjct: 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
E Y+R + V T+ + ++++ R+ E++ +L+ NK
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLV-GNKS 133
Query: 129 DLKD 132
DL+D
Sbjct: 134 DLED 137
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-09
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG---SNVEELVYKNIRFEAWDVGGQ 71
DY++ + G GK++ + + G ++ PTV V + D G
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
+ HA I+V T R + + +++ + G + ++L+ NK
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIMLV-GNKC 119
Query: 129 DLKD 132
D
Sbjct: 120 DESP 123
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-09
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG---SNVEELVYKNIRFEAWDVGGQ 71
+K+I+VG GK+ + E V + PT L + ++ + D GQ
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
E Y+R + V T+ + ++++ R+ E++ +L+ NK
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLV-GNKS 119
Query: 129 DLKD 132
DL+D
Sbjct: 120 DLED 123
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-09
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQ 71
+K+I+VG GK+ + E V + PT + + V + ++ + D GQ
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
E Y+R + V T+ + ++++ R+ E++ +L+ NK
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLV-GNKS 129
Query: 129 DLKD 132
DL+D
Sbjct: 130 DLED 133
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-09
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 20/128 (15%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY--------KNIRFEAWDV 68
+K+++VG GK+T + H E Y + + +D+
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS----EDTYERRIMVDKEEVTLIVYDI 58
Query: 69 GGQERLRTSW-ATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIF 124
Q + A ++V TDR ++ L H DL V+L+
Sbjct: 59 WEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP--VILV- 115
Query: 125 ANKQDLKD 132
NK DL
Sbjct: 116 GNKSDLAR 123
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 4e-09
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 9/126 (7%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG---SNVEELVYKNIRFEAWDVG 69
+ + I+G AGK+ K ++ + P + S+ E + ++ + D
Sbjct: 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFAN 126
+ R Y HA +VV R S + L +L+ N
Sbjct: 78 DLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL-GN 135
Query: 127 KQDLKD 132
K D+
Sbjct: 136 KLDMAQ 141
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-09
Identities = 39/173 (22%), Positives = 57/173 (32%), Gaps = 33/173 (19%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWDVGGQ 71
+ K + VG GKT L T + PTV N + + WD GQ
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 72 E---RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS-----VVLI 123
E RLR YRG I+ +A + + +L+H +VL+
Sbjct: 67 EDYNRLRPL---SYRGADVFILAFSLISKASYENVSKK-----WIPELKHYAPGVPIVLV 118
Query: 124 FANKQDLKDAMTPAEITDALSLHSIKNHDWH-----IQA-----CSALTGDGL 166
K DL+D D I I A CS+ + + +
Sbjct: 119 -GTKLDLRD--DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENV 168
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 4e-09
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 9/129 (6%)
Query: 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG---SNVEELVYKNIRFEAW 66
M DY++++ G GK++ + + G T+ PT+ V +
Sbjct: 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQIT 61
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLI 123
D G + HA I+V T + + + + ++ G + V+L+
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLV 120
Query: 124 FANKQDLKD 132
NK D
Sbjct: 121 -GNKCDETQ 128
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 5e-09
Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 29/169 (17%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQE-- 72
K+++VG GKT+ L G ++ PTV + K + WD GQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95
Query: 73 -RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS----VVLIFANK 127
RLR +Y +++ D T + + + E ++++ K
Sbjct: 96 DRLRPL---FYPDASVLLLCFDVTSPNSFDNIFNRWY----PEVNHFCKKVPIIVV-GCK 147
Query: 128 QDLKDAMTPAEITDALSLHSIKNHD-----WHIQA-----CSALTGDGL 166
DL+ + L + H + A CSA D +
Sbjct: 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNV 196
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-09
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 20/128 (15%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY--------KNIRFEAWDV 68
+K+++VG GK+T + + H P E Y + + +D+
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP----EDTYERRIMVDKEEVTLVVYDI 79
Query: 69 GGQERLRTSW-ATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIF 124
Q + A ++V TDR ++ L H DL V+L+
Sbjct: 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP--VILV- 136
Query: 125 ANKQDLKD 132
NK DL
Sbjct: 137 GNKSDLAR 144
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 6e-09
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY---KNIRFEAWDVGGQERL 74
YK++++G GK+ E G + + + +D+ Q+
Sbjct: 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 75 RTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R A ++V TD+ + S ++ +L R +D+ +++ NK DL
Sbjct: 63 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV---PIILVGNKSDLV 119
Query: 132 D 132
Sbjct: 120 R 120
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-09
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 20/130 (15%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY--------KNIRFEAWD 67
Y+++++G GKT+ + H +G E VY ++ D
Sbjct: 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG----EDVYERTLTVDGEDTTLVVVD 58
Query: 68 VGGQERLRTSW--ATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVL 122
E+L SW + +G A ++V DR S ++ +L R + + ++
Sbjct: 59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHV---PII 115
Query: 123 IFANKQDLKD 132
+ NK DL
Sbjct: 116 LVGNKADLAR 125
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-09
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 23/168 (13%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWDVGGQERL 74
KI++VG GKT L+ + PTV N E+ + I WD G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS----VVLIFANKQDL 130
Y + AV++ D + + + + E + ++L+ K DL
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK----GEIQEFCPNTKMLLV-GCKSDL 123
Query: 131 KDAMTPAEITDALSLHSIKNHD-----WHIQA-----CSALTGDGLVD 168
+ ++ + I A CSAL + V
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR 171
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 9e-09
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 25/165 (15%)
Query: 16 KDYKIIIVGLDNA-GKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGG 70
K KI++VG D A GKT L GE+ T + PTV N ++ + WD G
Sbjct: 22 KALKIVVVG-DGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 71 QE---RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS----VVLI 123
QE RLR Y + V++ +R + + E + VL+
Sbjct: 81 QEEYDRLRPL---SYADSDVVLLCFAVNNRTSFDNISTKWE----PEIKHYIDTAKTVLV 133
Query: 124 FANKQDL-KDAMTPAEITDALSL-HSIKNHDWHIQACSALTGDGL 166
K DL KD + L + +I+ S++ GL
Sbjct: 134 -GLKVDLRKDGSDDVTKQEGDDLCQKLGCVA-YIE-ASSVAKIGL 175
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 17/129 (13%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH---PTVGS------NVEELVYKNIRFEAW 66
Y+++++G GK+T V+ I + W
Sbjct: 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLI 123
+ G+ + A ++V TDRA + S ++ +L R ED+ +++
Sbjct: 65 ENKGENEWLHD--HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI---PIIL 119
Query: 124 FANKQDLKD 132
NK DL
Sbjct: 120 VGNKSDLVR 128
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 5e-08
Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 23/168 (13%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWDVGGQERL 74
K+++VG GKT L L T+ PTV N E + + WD G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS----VVLIFANKQDL 130
Y + AV++ D + + D + E L + V+LI K DL
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETV----DSALKKWRTEILDYCPSTRVLLI-GCKTDL 143
Query: 131 KDAMTPAEITDALSLHSIKNHD-----WHIQA-----CSALTGDGLVD 168
+ ++ I + A SA T + +
Sbjct: 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIH 191
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 9e-08
Identities = 39/167 (23%), Positives = 55/167 (32%), Gaps = 21/167 (12%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWDVGGQE-- 72
K ++VG GKT L + PTV + + K +D GQE
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79
Query: 73 -RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
RLR Y T ++ + A +K+E L +LI + DL+
Sbjct: 80 DRLRP---LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI-GTQIDLR 135
Query: 132 DAMTPAEITDALSLHSIKNHD-----WHIQA-----CSALTGDGLVD 168
D + + I I A CSALT GL
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-07
Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 31/178 (17%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWD 67
P ++ KI++VG GKT L+ + PTV N E+ + I WD
Sbjct: 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 82
Query: 68 VGGQE---RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS----V 120
G +R Y + AV++ D + + + + E + +
Sbjct: 83 TSGSPYYDNVRPL---SYPDSDAVLICFDISRPETLDSVLKKWK----GEIQEFCPNTKM 135
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHD-----WHIQA-----CSALTGDGLVD 168
+L+ K DL+ ++ + I A CSAL + V
Sbjct: 136 LLV-GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR 192
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 18 YKIIIVGLDNAGKT--TTLYKLHLGEVVTTHPTVGSN-------VEELVYKNIRFEAWDV 68
Y+++++G GK+ ++ + + +G + V+ I + W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFA 125
G+ + A ++V TDRA + S ++ +L R ED+ +++
Sbjct: 98 KGENEWLHD--HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI---PIILVG 152
Query: 126 NKQDLKD 132
NK DL
Sbjct: 153 NKSDLVR 159
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 43/172 (25%), Positives = 61/172 (35%), Gaps = 33/172 (19%)
Query: 16 KDYKIIIVGLDNA-GKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGG 70
K K + VG D A GKT L + T + PTV N V + + WD G
Sbjct: 8 KFIKCVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAG 66
Query: 71 QE---RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS-----VVL 122
QE RLR YRG ++ +A + +L+ +VL
Sbjct: 67 QEDYSRLRPL---SYRGADIFVLAFSLISKASYENVLK-----KWMPELRRFAPNVPIVL 118
Query: 123 IFANKQDLKDAMTPAE-----IT--DALSL-HSIKNHDWHIQACSALTGDGL 166
+ K DL+D IT L I +I+ CS+ T +
Sbjct: 119 V-GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAA-YIE-CSSKTQQNV 167
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-06
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 42 VVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARIS 101
+ T G + + F +DVGGQ R W + A+I V+ S+ +
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257
Query: 102 I-------MKD--ELFR-LLGHEDLQHSVVLIFANKQDL 130
+++ LF+ + + L+ V++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-06
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR------ 97
PT G + + KN+ F+ DVGGQ R W + +++ ++ S++
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243
Query: 98 -ARISIMKD--ELFR-LLGHEDLQHSVVLIFANKQDL 130
+ + + + +F ++ + + +++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-06
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISI- 102
PT G +++ F DVGGQ R W + +++ ++ ++ ++ +
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209
Query: 103 ------MKD--ELFR-LLGHEDLQHSVVLIFANKQDL 130
M++ LFR ++ + Q+S V++F NK+DL
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-05
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD------- 96
T T G +K++ F+ +DVGGQ R W + G A+I + +D
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 97 RARISIMKD--ELFR-LLGHEDLQHSVVLIFANKQDL 130
++ M + +LF + ++ + +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-05
Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 37/153 (24%)
Query: 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHL-GEVVTTHPTVGSNVEELVYKNIRFEAW-DVG 69
L P K+ ++I G+ +GKT + +V ++ V+ + I F W ++
Sbjct: 147 LRPAKN--VLIDGVLGSGKTW------VALDVCLSYK-----VQCKMDFKI-F--WLNLK 190
Query: 70 GQER----LRTSWATYYRGTHAVIVVIDSTDRARISI--MKDELFRLLGHEDLQHSVVLI 123
L Y+ D + ++ I ++ EL RLL + ++ +L+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLV 249
Query: 124 FANKQDLK--DAMTP----------AEITDALS 144
N Q+ K +A ++TD LS
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 2e-04
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISI----- 102
S V E + +DVGGQ R W + G AVI ++ +
Sbjct: 170 IQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQK 229
Query: 103 --MKD--ELFR-LLGHEDLQHSVVLIFANKQDL 130
M + ELF +L + + ++F NK D+
Sbjct: 230 NRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 2e-04
Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 16/173 (9%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEV-VTTHP--TVGSNVEELVYKNIRFEAWDVGG------ 70
II+ G N GK++ + + V V ++ T V +K +++ D G
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91
Query: 71 QERLRTSWATYYRGTH---AVIVVIDSTDRARISIMKD-ELFRLLGHEDLQHSVVLIFAN 126
+ R T H ++ +ID +++ ++I + LF + + ++I N
Sbjct: 92 ENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIK-SVFSNKSIVIGFN 150
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHDWHIQAC--SALTGDGLVDGLEWISQRV 177
K D + + + L + N I+ S LTG G+ + +
Sbjct: 151 KIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELL 203
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEV-VTTHP--TVGSNVEELVYKNIRFEAWDVGG------ 70
++I G N GK+T L L + + ++P T G NV + R++ D G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 71 QERLRTSWATYYRGTH---AVIVVIDSTDRARISIMKDELFRLLG--HEDLQHSVVLIFA 125
ER + +I + D ++ + +E L H + + L+
Sbjct: 230 SERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPL--EEQIHLFEEVHGEFKDLPFLVVI 287
Query: 126 NKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
NK D+ D + + K + SAL G G+ E I + +
Sbjct: 288 NKIDVADEENIKRLEKFV-----KEKGLNPIKISALKGTGIDLVKEEIIKTL 334
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 183 | |||
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 100.0 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 100.0 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.98 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.98 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.98 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.98 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.98 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.98 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.98 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.98 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.98 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.98 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.98 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.98 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.98 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.98 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.97 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.97 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.97 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.97 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.97 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.97 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.97 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.97 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.97 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.97 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.97 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.97 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.97 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.97 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.97 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.97 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.97 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.97 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.97 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.96 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.96 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.96 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.96 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.96 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.96 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.95 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.95 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.95 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.95 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.95 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.95 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.94 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.94 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.94 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.94 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.94 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.94 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.94 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.93 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.93 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.93 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.93 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.92 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.92 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.92 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.92 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.92 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.92 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.92 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.92 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.92 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.92 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.92 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.91 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.91 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.91 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.91 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.91 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.91 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.91 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.91 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.91 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.9 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.9 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.9 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.9 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.9 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.9 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.9 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.9 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.9 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.9 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.9 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.9 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.9 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.89 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.89 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.88 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.88 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.88 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.88 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.88 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.87 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.87 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.86 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.86 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.86 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.86 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.85 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.85 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.84 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.84 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.84 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.83 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.83 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.82 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.81 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.8 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.79 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.79 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.77 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.77 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.76 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.76 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.76 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.74 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.73 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.72 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.72 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.71 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.7 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.7 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.7 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.69 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.69 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.67 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.67 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.67 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.65 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.62 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.57 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.56 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.4 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.3 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.23 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.19 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.11 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.11 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.08 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.04 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.01 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.0 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.95 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.93 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.86 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.86 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.68 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.64 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.59 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.49 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.33 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.32 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.26 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.18 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.09 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.07 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.07 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.06 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.93 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.86 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.84 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.71 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.7 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.7 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.69 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.66 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.64 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.64 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.64 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.64 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.63 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.62 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.62 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.59 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.59 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.59 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.58 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.58 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.57 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.54 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.54 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.54 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.54 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.53 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.53 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.53 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.52 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.52 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.51 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.51 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.51 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.5 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.5 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.5 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.49 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.49 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.49 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.49 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.48 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.48 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.47 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.46 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.46 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.45 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.45 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.45 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.45 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.44 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.44 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.43 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.43 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.43 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.43 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.42 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.41 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.41 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.4 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.4 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.4 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.39 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.39 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.38 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.38 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.38 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.38 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.37 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.37 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.37 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.37 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.36 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.36 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.35 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.35 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.35 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.34 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.34 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.34 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.33 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.32 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.32 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.32 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.31 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.3 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.3 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.3 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.29 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.29 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.28 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.28 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.28 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.27 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.27 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.27 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.27 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.26 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.26 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.26 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.26 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.25 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.25 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.25 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.25 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.24 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.24 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.24 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.24 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.24 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.23 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.23 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.23 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.23 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.22 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.21 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.21 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.21 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.21 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 97.2 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.19 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.18 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.18 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.17 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.17 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.16 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.16 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.16 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.15 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.15 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.15 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.15 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.14 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.14 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.13 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.13 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.12 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.11 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.11 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.1 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 97.09 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.09 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.09 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 97.08 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.08 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.07 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.07 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.06 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.05 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.05 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.04 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.04 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.04 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 97.03 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 97.03 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.02 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 97.02 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.01 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.01 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.01 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.0 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.0 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.99 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.98 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.98 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.97 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.97 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.96 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.95 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.95 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.95 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.95 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.94 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.92 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.92 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.91 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.9 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.9 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.9 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.9 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.89 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.88 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.88 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.85 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.85 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.83 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.83 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.83 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.83 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.82 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.81 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.81 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.8 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.8 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.79 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.77 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.77 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.76 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.76 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.75 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.75 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.75 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 96.74 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.73 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.72 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.72 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.72 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.71 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.7 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.7 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.7 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.69 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.69 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.69 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.68 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.67 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.67 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.67 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.67 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.66 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.66 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.66 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.65 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.65 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.62 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.61 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.6 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.6 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.57 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.57 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.57 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.56 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.56 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.55 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.52 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.51 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.51 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.5 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.47 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.46 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.46 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.45 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.45 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.44 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.43 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.42 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.42 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.41 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.41 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.41 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.41 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.4 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.36 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.36 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.36 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.34 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.32 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.3 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.3 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.3 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.3 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.26 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.25 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.25 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.24 |
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=216.27 Aligned_cols=181 Identities=59% Similarity=1.009 Sum_probs=153.5
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||++++++++ ++.++.++|+++|++|+|||||++++.++.+..+.+|.+.....+.+++..+.+|||||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8999888888 777899999999999999999999999888777778888888888889999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999999987644467999999999999876666777666655434456779999999
Q ss_pred ccCCCHHHHHHHHHHhhhccCC
Q 030113 161 LTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++|.|++++++++.+.+.+.++
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC---
T ss_pred CCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999877654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=214.26 Aligned_cols=180 Identities=46% Similarity=0.845 Sum_probs=156.6
Q ss_pred CchhhHHHhhhcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHH
Q 030113 1 MGALVSKFWFMLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (183)
||++++++++.++. ++.++|+++|++|+|||||++++.++.+..+.++.+.....+.+++..+.+|||||++++...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 89999999998887 89999999999999999999999988887788888888888888899999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999999988765557899999999999987766777777776555555678999999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
|++|.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=215.01 Aligned_cols=181 Identities=51% Similarity=0.901 Sum_probs=157.6
Q ss_pred CchhhHHHhh--hcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 1 MGALVSKFWF--MLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
||++++++++ .++. ++.++|+++|++|+|||||++++.++.+..+.+|.+.....+..+...+.+|||||++++...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 7887777777 5666 789999999999999999999999888877788888888888889999999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEE
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+.....++.+.++.......++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999999887766678999999999999877666777777765555566789999
Q ss_pred eecccCCCHHHHHHHHHHhhhccC
Q 030113 158 CSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
+||+++.|++++++++.+.+.++.
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred ccCCCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999999987764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=208.21 Aligned_cols=178 Identities=41% Similarity=0.747 Sum_probs=146.8
Q ss_pred CchhhHHHhhhcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHH
Q 030113 1 MGALVSKFWFMLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (183)
|| +++ .+..+.. ++.++|+++|++|+|||||++++.++....+.+|.+.....+..+...+.+|||||++++...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 56 444 4444454 78899999999999999999999988866677888888888888999999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999999988765556799999999999987767677777666544445678999999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
|+++.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988765
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=210.91 Aligned_cols=175 Identities=47% Similarity=0.868 Sum_probs=150.0
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCC
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGT 85 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (183)
.++++.+..++.++|+++|++|+|||||++++.++.+..+.+|.+.....+......+.+|||||++++...+..+++++
T Consensus 18 ~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (192)
T 2b6h_A 18 GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNT 97 (192)
T ss_dssp CCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTC
T ss_pred HHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccC
Confidence 45667777889999999999999999999999998887777888888888888999999999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++||++|.|
T Consensus 98 d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 98 QGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 99999999999999999999999988765556799999999999987766777777777655556678899999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++++++.+.+.++
T Consensus 178 i~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 178 LYDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988754
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=204.42 Aligned_cols=167 Identities=43% Similarity=0.782 Sum_probs=144.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
.+.++|+++|++|+|||||++++.+..+..+.++.+.....+..++..+.+|||||++.+...+..+++++|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67899999999999999999999998877778888888888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+++.++.....|+..++......+.|+++|+||+|+.+.....++.+.++........++++++||++|.|++++|+++.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 99999999999998887765456799999999999987766666766665544445677899999999999999999999
Q ss_pred HhhhccC
Q 030113 175 QRVTGKA 181 (183)
Q Consensus 175 ~~~~~~~ 181 (183)
+.+.+++
T Consensus 174 ~~~~~~~ 180 (181)
T 1fzq_A 174 KNVNAKK 180 (181)
T ss_dssp HTC----
T ss_pred HHHHhcc
Confidence 9887653
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=200.50 Aligned_cols=167 Identities=46% Similarity=0.871 Sum_probs=149.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
++.++|+++|++|+|||||++++.++.+....++.+.....+.++...+.+|||||++++...+..+++++|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999998888888888888888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+++.++.....++..++......+.|+++|+||+|+.+.....++.+.+........+++++++||++|.|++++++++.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999999988765456799999999999987766677777776555556678999999999999999999999
Q ss_pred HhhhccC
Q 030113 175 QRVTGKA 181 (183)
Q Consensus 175 ~~~~~~~ 181 (183)
+.+.+++
T Consensus 165 ~~i~~~q 171 (171)
T 1upt_A 165 ETLKSRQ 171 (171)
T ss_dssp HHHHTCC
T ss_pred HHHhhcC
Confidence 9987754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=200.10 Aligned_cols=163 Identities=53% Similarity=0.972 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+||+++|++|+|||||++++.++.+....+|.+.....+......+.+|||||++++...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887777888887777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++||++|.|++++++++.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999988765556799999999999987766677777776555555678899999999999999999999988
Q ss_pred hcc
Q 030113 178 TGK 180 (183)
Q Consensus 178 ~~~ 180 (183)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 765
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=201.16 Aligned_cols=165 Identities=31% Similarity=0.532 Sum_probs=140.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
...+.++|+++|++|+|||||++++.++.+..+.++.+.....+..++..+.+|||||++.+...+..+++++|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 34677899999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc-------cCCCceEEEEeecccCCC
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS-------IKNHDWHIQACSALTGDG 165 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~S~~~~~g 165 (183)
|++++.++.....|+..+.......+.|+++|+||+|+.+.....+..+.+.... .....++++++||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999999988765556799999999999987666666666654322 223567899999999999
Q ss_pred HHHHHHHHHHhh
Q 030113 166 LVDGLEWISQRV 177 (183)
Q Consensus 166 i~~~~~~i~~~~ 177 (183)
++++|+++.+.+
T Consensus 179 i~~l~~~l~~~l 190 (190)
T 1m2o_B 179 YLEAFQWLSQYI 190 (190)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=199.56 Aligned_cols=169 Identities=30% Similarity=0.554 Sum_probs=145.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcc-cccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
..++.++|+|+|++|+|||||++++.++.+. .+.++.+..+..+......+.+|||||++++...+..+++++|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 3457799999999999999999999988775 467888888888888899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.+........+++++++||++|.|++++|+
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999999999988764446799999999999987666667766666554455678899999999999999999
Q ss_pred HHHHhhhccC
Q 030113 172 WISQRVTGKA 181 (183)
Q Consensus 172 ~i~~~~~~~~ 181 (183)
++.+.+.+++
T Consensus 178 ~l~~~~~~~~ 187 (188)
T 1zd9_A 178 WLIQHSKSRR 187 (188)
T ss_dssp HHHHTCC---
T ss_pred HHHHHHHhhc
Confidence 9999887654
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=199.11 Aligned_cols=164 Identities=62% Similarity=1.038 Sum_probs=143.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
..+.++|+++|++|+|||||++++.++.+....++.+.....+.+++..+.+|||||++++...+..+++++|++++|+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35679999999999999999999999988777888888888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++||++|.|++++|++|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999998876444679999999999998776677777777655545567799999999999999999999
Q ss_pred HHhh
Q 030113 174 SQRV 177 (183)
Q Consensus 174 ~~~~ 177 (183)
.+.+
T Consensus 178 ~~~l 181 (181)
T 2h17_A 178 MSRL 181 (181)
T ss_dssp HTC-
T ss_pred HhhC
Confidence 8753
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=212.96 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=122.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEE--EE--cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEEL--VY--KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.|.+.+||+|+|++|||||||++++..+.+.. +.+|++..+... .. ..+.+++|||+|++++..++..+++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 35678999999999999999999999988865 567877655433 23 34789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.+|..+..|+..+.... ..+.|++||+||+|+.+. ....+..+.. ...+++|++|||++|.|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a-----~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKA-----KELNVMFIETSAKAGYN 162 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBS
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHH-----HHhCCeeEEEeCCCCcC
Confidence 999999999999999999999886543 357999999999998653 2333322221 22346799999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
|+++|+.|++.+.+.
T Consensus 163 V~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 163 VKQLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=202.39 Aligned_cols=171 Identities=34% Similarity=0.623 Sum_probs=142.8
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc--cCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT--HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+...++|+|+|++|+|||||++++.+..+... .+|.+.....+......+.+|||||++++...+..+++++|++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 34556889999999999999999999999887653 7888988888888999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCC-------CCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEeec
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDL-------QHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACSA 160 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~ 160 (183)
|+|||++++.+|..+..|+..+...... .+.|+++|+||+|+.......++.+.++.... ...+++++++||
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 170 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG 170 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence 9999999999999999999988765221 27899999999999887777777776664433 446789999999
Q ss_pred ccCCCHHHHHHHHHHhhhccC
Q 030113 161 LTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~ 181 (183)
+++.|++++|++|.+.+.++.
T Consensus 171 ~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 171 LKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTTBTHHHHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999887654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=199.81 Aligned_cols=165 Identities=28% Similarity=0.525 Sum_probs=133.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
...+.++|+++|++|+|||||++++.++.+..+.+|.+.....+..++..+.+|||||++.+...+..+++++|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 45678999999999999999999999988877778888888888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc---------c---CCCceEEEEeec
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS---------I---KNHDWHIQACSA 160 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~S~ 160 (183)
|+++++++.....|+..+.......+.|+++|+||+|+.+.....+..+.+.... . ....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999988765456799999999999987666666666554321 0 124678999999
Q ss_pred ccCCCHHHHHHHHHHhh
Q 030113 161 LTGDGLVDGLEWISQRV 177 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~ 177 (183)
++|+|++++|+++.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-35 Score=195.04 Aligned_cols=167 Identities=38% Similarity=0.730 Sum_probs=139.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC--cccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE--VVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
..+.++|+++|++|+|||||++++.+.. ...+.++.+.....+.+++..+.+|||||++++...+..+++++|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 3577999999999999999999999887 33466788888888888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCC--CCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDL--QHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|++++.++.....|+..+...... .+.|+++|+||+|+.+.....++.+.+........+++++++||+++.|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999999999999999888766444 57999999999999877666666666653333345778999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
++++.+.+.+.
T Consensus 178 ~~~l~~~i~~~ 188 (190)
T 2h57_A 178 VDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999988654
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=209.76 Aligned_cols=168 Identities=52% Similarity=0.948 Sum_probs=146.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.++.++|+|+|++|+|||||++++.+..+....+|.+.....+......+.+|||||++.+...+..+++.+|++|+|||
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999988777789998888888999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
++++.++..+..++..++......+.|+++|+||+|+.+.....++...++.......+++++++||++|.|++++|++|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999999887666689999999999998877778888888776666778899999999999999999999
Q ss_pred HHhhhccC
Q 030113 174 SQRVTGKA 181 (183)
Q Consensus 174 ~~~~~~~~ 181 (183)
.+.+.+++
T Consensus 322 ~~~l~~~k 329 (329)
T 3o47_A 322 SNQLRNQK 329 (329)
T ss_dssp HHHHTC--
T ss_pred HHHHHhcC
Confidence 99987753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=187.59 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=106.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.+||+++|++|+|||||++++.+.......++.+..+. .+.. ....+.+||+||++.+...+..+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776665666665543 2223 35688999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
++++.++..+..|+..+.......+.|+++|+||+|+.+... ..+... +. ...+++++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-CA----VVFDCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH-HH----HHTTCEEEECBGGGTBSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH-HH----HHhCCcEEEeccCCCCCHHHHHH
Confidence 999999999999999988765567899999999999865432 222222 11 12346899999999999999999
Q ss_pred HHHHhhhcc
Q 030113 172 WISQRVTGK 180 (183)
Q Consensus 172 ~i~~~~~~~ 180 (183)
++.+.+.++
T Consensus 157 ~l~~~~~~~ 165 (166)
T 3q72_A 157 GVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988765
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=186.21 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=117.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee--EEEEEcC--eEEEEEEcCCChh--hHhhHHhhccCCCEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV--EELVYKN--IRFEAWDVGGQER--LRTSWATYYRGTHAV 88 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~i 88 (183)
.+.++|+++|++|+|||||++++.+..+....++.+.+. ..+..++ ..+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467999999999999999999999988776666666543 3344443 5789999999987 556677888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA-----VVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH-----HHcCCeEEEEecCCCCCH
Confidence 99999999999999988888776654445799999999999965422 22222211 112457999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
+++|+++.+.+.+++
T Consensus 157 ~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 157 AELFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999886543
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=184.92 Aligned_cols=161 Identities=17% Similarity=0.232 Sum_probs=125.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..+.+.+||+++|++|+|||||++++.++.+.. +.++.+.....+...+ +.+.+|||+|++.+. +++.+|++
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 445688999999999999999999999888765 3445443334455554 678889999998876 67889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD----AMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.. .....+..+.... ...++++++||++|.
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGL 165 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCC
Confidence 99999999999999999999887765446799999999999842 2233333322221 123579999999999
Q ss_pred CHHHHHHHHHHhhhccC
Q 030113 165 GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~ 181 (183)
|++++|+++++.+.+++
T Consensus 166 gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALR 182 (184)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=184.47 Aligned_cols=158 Identities=22% Similarity=0.365 Sum_probs=125.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999887654 456666544 333443 4689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC-----CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA-----MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||+++.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999999988887776543 357999999999998643 1222222211 12345899999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030113 166 LVDGLEWISQRVTG 179 (183)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (183)
++++|+++.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=181.67 Aligned_cols=165 Identities=22% Similarity=0.319 Sum_probs=128.7
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcc-cccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
-...+.+||+|+|++|+|||||++++.+..+. ...++.+.++..... ....+.+|||||++++...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 33467899999999999999999999988865 456777765543322 4578999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .....+..+... ..+++++++||+++.
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAI 171 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTB
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCc
Confidence 9999999999999999988887775532 35799999999999864 223333333322 234689999999999
Q ss_pred CHHHHHHHHHHhhhccCC
Q 030113 165 GLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~~ 182 (183)
|++++++++.+.+.+.++
T Consensus 172 gi~~l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 172 NIEELFQGISRQIPPLDP 189 (192)
T ss_dssp SHHHHHHHHHHTCC----
T ss_pred CHHHHHHHHHHHHHhhCC
Confidence 999999999999987765
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=185.52 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=126.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.++.+.. ..++.+..+ ..+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 567999999999999999999999776644 445665544 2233444 678999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCcEEEEecCCCCCHHH
Confidence 99999999999999998888766555679999999999985432 2233222222 2345799999999999999
Q ss_pred HHHHHHHhhhccCC
Q 030113 169 GLEWISQRVTGKAP 182 (183)
Q Consensus 169 ~~~~i~~~~~~~~~ 182 (183)
+|+++.+.+.+++.
T Consensus 159 l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 159 VFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887653
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=180.98 Aligned_cols=162 Identities=25% Similarity=0.350 Sum_probs=129.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 356999999999999999999999887654 4566554443 3333 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHH
Confidence 999999999999999888888776555679999999999995432 2233222221 2346799999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
+|+++.+.+.+.+
T Consensus 168 l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 168 AFEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=189.82 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=125.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE---EEEcCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE---LVYKNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
....+.+||+++|++|+|||||++++.+..+.. +.++.+..+.. .......+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 344678999999999999999999999888755 34555544322 22256889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA-----ESWGATFMESSARENQL 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECCTTCHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH-----HHhCCeEEEEeCCCCCC
Confidence 99999999999999999999999877666689999999999986432 222222221 12345799999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030113 166 LVDGLEWISQRVTGKAP 182 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (183)
++++|+++.+.+.+...
T Consensus 174 v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 174 TQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999998876643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=181.87 Aligned_cols=162 Identities=22% Similarity=0.347 Sum_probs=124.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+..++ ..+.+|||||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 456999999999999999999999887654 45665543 34455554 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCce-EEEEeecccCCCH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDW-HIQACSALTGDGL 166 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi 166 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..++ +++++||+++.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCH
Confidence 9999999999998888887776543 357999999999998652 23333333322 1234 7999999999999
Q ss_pred HHHHHHHHHhhhccCC
Q 030113 167 VDGLEWISQRVTGKAP 182 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~~ 182 (183)
+++|+++.+.+.++..
T Consensus 181 ~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 181 EEAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999877643
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=179.32 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=127.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+.+||+++|++|+|||||++++.+..+.. ..++.+..+. .....+ ..+.+|||||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34578999999999999999999999877654 4455554432 233333 5677899999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecc-cCCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSAL-TGDG 165 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~g 165 (183)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||+ ++.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCC
Confidence 999999999999999988888866544567999999999998653 23333322222 123569999999 9999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++|+++.+.+.++
T Consensus 169 v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=177.16 Aligned_cols=159 Identities=16% Similarity=0.253 Sum_probs=125.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++|+|||||++++.++.+.. +.++.+..+.. +.. ....+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999887654 44555544332 222 346899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ...+.+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHH
Confidence 9999999999888888777654444679999999999986432 2233322221 123568999999999999999
Q ss_pred HHHHHHhhh
Q 030113 170 LEWISQRVT 178 (183)
Q Consensus 170 ~~~i~~~~~ 178 (183)
++++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=184.30 Aligned_cols=163 Identities=23% Similarity=0.276 Sum_probs=124.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+.+||+++|++|+|||||++++.+..+.. +.++.+..+.. +... ...+.+|||||++.+...+..+++++|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 34567999999999999999999999988754 45666655443 2333 46679999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhcCcCccCCCceE-EEEeeccc
Q 030113 89 IVVIDSTDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDA----MTPAEITDALSLHSIKNHDWH-IQACSALT 162 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~ 162 (183)
++|||++++.++..+.. |+..+... ..+.|+++|+||+|+.+. ....+..+.... .+++ ++++||++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK-----LGCVAYIEASSVA 171 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-----HTCSCEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh-----cCCCEEEEeecCC
Confidence 99999999999998744 44444322 257999999999998643 223332222211 1233 99999999
Q ss_pred CCCHHHHHHHHHHhhhccCC
Q 030113 163 GDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~~~ 182 (183)
|.|++++|+++.+.+.++++
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999988765
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=183.05 Aligned_cols=163 Identities=23% Similarity=0.247 Sum_probs=126.1
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc-----------cCcccceeEEE-----EEcCeEEEEEEcCCChhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----------HPTVGSNVEEL-----VYKNIRFEAWDVGGQERLR 75 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----------~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~~ 75 (183)
....+.+||+++|++|+|||||++.+.+.....+ .++.+.++... ......+.+|||||++++.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456789999999999999999987765543332 23444333221 1134689999999999999
Q ss_pred hhHHhhccCCCEEEEEEeCC------CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC
Q 030113 76 TSWATYYRGTHAVIVVIDST------DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK 149 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 149 (183)
..+..+++++|++++|||++ +.+++..+..|+..+. ....+.|+++|+||+|+.+.....+..+....
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---- 162 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP---- 162 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT----
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh----
Confidence 99999999999999999999 4566777777777763 23467999999999999877666666655543
Q ss_pred CCce-EEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 150 NHDW-HIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 150 ~~~~-~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.++ +++++||++|.|++++|+++.+.+.++.
T Consensus 163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 234 7999999999999999999999887653
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=180.92 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=119.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+.+||+++|++|+|||||++++.++.+..+.++.+..+. .+..+ ...+.+|||||+++ ..+++++|++++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 45789999999999999999999999888776677765542 33343 36789999999887 456788999999
Q ss_pred EEeCCCcccHHHHHHHHHHHh--CCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 91 VIDSTDRARISIMKDELFRLL--GHEDLQHSVVLIFANKQDLKD----AMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~~vilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
|||++++.++..+..|+..+. ......+.|+++|+||+|+.+ .....+..+... ...+++++++||++|.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGL 154 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccC
Confidence 999999999999888643332 222235799999999999842 222333322221 1135689999999999
Q ss_pred CHHHHHHHHHHhhhcc
Q 030113 165 GLVDGLEWISQRVTGK 180 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~ 180 (183)
|++++|+++++.+.+.
T Consensus 155 ~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTL 170 (178)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987654
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=176.78 Aligned_cols=164 Identities=26% Similarity=0.391 Sum_probs=127.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.+.+.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+... ...+.+|||||++++...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34677999999999999999999999887655 345555443 333343 4689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCC
Confidence 999999999999999888888776543 3579999999999986432 2333333221 2345799999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030113 166 LVDGLEWISQRVTGKAP 182 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (183)
++++++++.+.+.+.++
T Consensus 162 i~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 162 VKEIFYEIARRLPRVQP 178 (181)
T ss_dssp HHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999887764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=180.49 Aligned_cols=160 Identities=23% Similarity=0.366 Sum_probs=126.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
+.+.++|+++|++|+|||||++++.++.+.. ..++.+.... .+... ...+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3567999999999999999999999877654 4456665443 33333 57899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999888888776543 257999999999998543 2223332222 123568999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030113 167 VDGLEWISQRVTG 179 (183)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (183)
++++++|.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 157 NEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=177.46 Aligned_cols=164 Identities=20% Similarity=0.341 Sum_probs=126.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..+.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 4567999999999999999999999887654 456666554 3344444 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCC---CCCCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGH---EDLQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++|+|++++.++..+..|+..+... ....+.|+++|+||+|+.+. ....+..+... .....+++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 9999999999998887777766532 22356899999999998632 23333333222 1234579999999999
Q ss_pred CHHHHHHHHHHhhhccC
Q 030113 165 GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~ 181 (183)
|++++|+++.+.+.+++
T Consensus 160 gi~~l~~~l~~~~~~~~ 176 (177)
T 1wms_A 160 NVAAAFEEAVRRVLATE 176 (177)
T ss_dssp THHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 99999999999987653
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=180.91 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=124.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-cCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.+..+... .++.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4679999999999999999999998876543 33433222 2333443 568889999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|||++++.++..+..|+..+.......+.|+++|+||+|+.+.....+..+.+.. ..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999888877655578999999999998654332222222221 123469999999999999999
Q ss_pred HHHHHhhhcc
Q 030113 171 EWISQRVTGK 180 (183)
Q Consensus 171 ~~i~~~~~~~ 180 (183)
+++.+.+.+.
T Consensus 158 ~~l~~~~~~~ 167 (189)
T 4dsu_A 158 YTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988643
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=182.68 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=129.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.+.+.++|+++|++|+|||||++++.+..+.. ..++.+..+. .+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34678999999999999999999999887654 4455554433 234443 6889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Confidence 9999999999999999888888655444679999999999986532 222222221 123568999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
+++++++.+.+.+..
T Consensus 160 ~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 160 DEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=182.34 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=121.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEc---CeEEEEEEcCCChhhHh-hHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYK---NIRFEAWDVGGQERLRT-SWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii 89 (183)
..+.++|+++|++|+|||||++++.++.+....++.......+.++ ...+.+|||||++++.. .+..+++.+|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 4577999999999999999999999988877666666666666665 68899999999999988 7888899999999
Q ss_pred EEEeCCCcc-cHHHHHHHHHHHhCC--CCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc---------------------
Q 030113 90 VVIDSTDRA-RISIMKDELFRLLGH--EDLQHSVVLIFANKQDLKDAMTPAEITDALSL--------------------- 145 (183)
Q Consensus 90 ~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~--------------------- 145 (183)
+|+|+++.. ++.....++...+.. ....+.|+++|+||+|+.+.....+..+.+..
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999854 455666666655432 12346899999999999766544333222210
Q ss_pred --CccC---------C--CceEEEEeecccC------CCHHHHHHHHHHhh
Q 030113 146 --HSIK---------N--HDWHIQACSALTG------DGLVDGLEWISQRV 177 (183)
Q Consensus 146 --~~~~---------~--~~~~~~~~S~~~~------~gi~~~~~~i~~~~ 177 (183)
.... . ..++|++|||++| .|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0000 1 1788999999999 99999999998753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=178.49 Aligned_cols=163 Identities=20% Similarity=0.312 Sum_probs=129.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE---EEEEc-----------CeEEEEEEcCCChhhHhh
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE---ELVYK-----------NIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~ 77 (183)
.....++|+|+|++|+|||||++++.+..+.. ..++.+..+. .+... ...+.+|||||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 34567999999999999999999999877643 4566666554 23333 468999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEE
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
+..+++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+.... .++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----YGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCCE
Confidence 99999999999999999999999998888888776544467999999999998652 223333322211 23469
Q ss_pred EEeecccCCCHHHHHHHHHHhhhcc
Q 030113 156 QACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++||+++.|+++++++|.+.+.++
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-32 Score=182.19 Aligned_cols=163 Identities=22% Similarity=0.338 Sum_probs=128.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
....++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 3567999999999999999999999887654 445555443 4444544 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--AEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.... .+..+... ..+++++++||+++.|+
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGIPFLETSAKNATNV 166 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEEECTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCCCH
Confidence 99999999999999888887775443 357999999999998654322 22222221 22357999999999999
Q ss_pred HHHHHHHHHhhhccCC
Q 030113 167 VDGLEWISQRVTGKAP 182 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~~ 182 (183)
+++|+++.+.+.++.+
T Consensus 167 ~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 167 EQSFMTMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999877643
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-32 Score=182.24 Aligned_cols=168 Identities=18% Similarity=0.245 Sum_probs=126.1
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEEc--CeEEEEEEcCCChhhHhhHHhhcc
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVYK--NIRFEAWDVGGQERLRTSWATYYR 83 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~ 83 (183)
+++...+.+.++|+++|++|+|||||++++.+..+.. +.++.+..+.. +... ...+.+|||||++. ...+..+++
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 4555566788999999999999999999999887654 44555544432 3333 47799999999988 777888899
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
.+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||+
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 172 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSAC 172 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCC
Confidence 99999999999999999988888877765444467999999999998653 22233222221 124579999999
Q ss_pred cCC-CHHHHHHHHHHhhhccC
Q 030113 162 TGD-GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~-gi~~~~~~i~~~~~~~~ 181 (183)
++. |++++|+++.+.+.+++
T Consensus 173 ~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 173 TGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp TCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHhhc
Confidence 999 99999999999987654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=175.35 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=124.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.... .+...+ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 457999999999999999999999887654 3445444432 233433 689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 9999999999999888888876554457999999999998643 22333333222 2245799999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|+++.+.+.++
T Consensus 157 l~~~l~~~i~~~ 168 (168)
T 1u8z_A 157 VFFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999988653
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=177.66 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=127.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc--ceeEEEEEcC---eEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG--SNVEELVYKN---IRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.++|+++|++|+|||||++++.+..+.. +.++.+ .....+...+ ..+.+|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 4678999999999999999999999887654 445665 3345555554 899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
+++|+|++++.++..+..|+..+..... ....|+++|+||+|+.+. ....+..+... ..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCC
Confidence 9999999999999888877776654210 122448999999998643 22233222221 12457999999999
Q ss_pred CCHHHHHHHHHHhhhccCC
Q 030113 164 DGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~~~~ 182 (183)
.|++++|+++.+.+.+++.
T Consensus 158 ~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp TTHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHhhhh
Confidence 9999999999999988764
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-32 Score=182.99 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=122.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-cccCccc--ceeEEEEEc--CeEEEEEEcCCChhhHh-hHHhhccCCCE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVG--SNVEELVYK--NIRFEAWDVGGQERLRT-SWATYYRGTHA 87 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~--~~~~~~~~~--~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ 87 (183)
....++|+++|++|||||||++++.+.... ...++.+ .....+..+ ...+.+|||+|++.+.. .+..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 356799999999999999999999754332 1222222 233334444 46789999999988765 77788899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.+|..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-----HhCCEEEEEcCCCCCC
Confidence 99999999999999999998887654433579999999999996532 2223222211 1245799999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++|+++++.+.+++
T Consensus 175 v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 175 TRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-31 Score=175.22 Aligned_cols=162 Identities=23% Similarity=0.365 Sum_probs=119.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc--cccCcccceeEE--EEEcC--eEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVGSNVEE--LVYKN--IRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~--~~~~~~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.++.++|+++|++|+|||||++++.+..+. ...++.+..+.. +...+ ..+.+|||||++++...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 467899999999999999999999988874 345666665543 23343 589999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999999999888888877755432 579999999999987543 2223222221 1234699999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++++++.+.+.++.
T Consensus 161 i~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 161 VDLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-31 Score=180.52 Aligned_cols=161 Identities=21% Similarity=0.358 Sum_probs=127.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc------------CeEEEEEEcCCChhhHhhHH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK------------NIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~------------~~~~~~~D~~g~~~~~~~~~ 79 (183)
.+.++|+|+|++|+|||||++++.+..+.. +.++.+..+. .+.+. ...+.+|||||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 456999999999999999999999887643 4455554432 23332 57899999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEE
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.+++.+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HCCCcEEE
Confidence 999999999999999999999999888887765544467999999999998653 22233322221 12356999
Q ss_pred eecccCCCHHHHHHHHHHhhhcc
Q 030113 158 CSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+||+++.|++++|+++.+.+.++
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999887653
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-31 Score=177.98 Aligned_cols=160 Identities=21% Similarity=0.326 Sum_probs=126.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.++.+.. ..++.+..+. .+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 456999999999999999999999887654 4566665443 344444 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999998888887765432 356999999999998643 22233222221 123579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 178 ~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 178 KLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888653
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.9e-33 Score=185.36 Aligned_cols=162 Identities=22% Similarity=0.356 Sum_probs=127.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+|+|++|+|||||++++.+..+.. ..++.+..... +.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 356999999999999999999999877644 34555544433 332 5688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 999999999999888887777553 23579999999999985432 222222221 1224579999999999999
Q ss_pred HHHHHHHHhhhccCC
Q 030113 168 DGLEWISQRVTGKAP 182 (183)
Q Consensus 168 ~~~~~i~~~~~~~~~ 182 (183)
++|+++.+.+.++.+
T Consensus 175 ~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 175 QAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999877654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9e-32 Score=177.00 Aligned_cols=159 Identities=26% Similarity=0.374 Sum_probs=125.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.... .+... ...+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 467999999999999999999999888644 4566665443 33333 478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+.. ...+..... ...+.+++++||+++.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 999999999998888877776543 23679999999999986432 222222222 1234689999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++++++.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-31 Score=174.05 Aligned_cols=161 Identities=24% Similarity=0.349 Sum_probs=126.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
...+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 44577999999999999999999999887654 445555443 333343 4689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCC
Confidence 999999999999988888877765432 257999999999998543 22233333222 2346899999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030113 166 LVDGLEWISQRVTG 179 (183)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (183)
++++|+++.+.+.+
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=176.61 Aligned_cols=160 Identities=23% Similarity=0.345 Sum_probs=121.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..++|+++|++|+|||||++++.+..+.. ..++.+..+. .+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999887643 4455554443 33333 3689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 999999999988888887775543 2578999999999995432 2222222221 12346999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
++++.+.+.++.
T Consensus 156 ~~~l~~~~~~~~ 167 (170)
T 1g16_A 156 FFTLAKLIQEKI 167 (170)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-31 Score=176.83 Aligned_cols=162 Identities=25% Similarity=0.369 Sum_probs=123.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhH-hhHHhhccCCC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLR-TSWATYYRGTH 86 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d 86 (183)
...+.+||+++|++|+|||||++++.++.+.. ..++.+..+ ..+...+ ..+.+|||||++++. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34577999999999999999999999887754 445655443 3444444 789999999999998 88899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccC-
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTG- 163 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~- 163 (183)
++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEEeCCcCC
Confidence 999999999999999998888888766545679999999999985432 2222222221 23457999999999
Q ss_pred --CCHHHHHHHHHHhhhc
Q 030113 164 --DGLVDGLEWISQRVTG 179 (183)
Q Consensus 164 --~gi~~~~~~i~~~~~~ 179 (183)
.|++++|+++.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999988754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=177.85 Aligned_cols=165 Identities=19% Similarity=0.249 Sum_probs=128.5
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.+.++|+++|++|+|||||++++.+..+.. +.++.+..+. .+...+ ..+.+|||||++++...+..+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 334577999999999999999999999887654 3444444432 234443 589999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRAN 167 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCC
Confidence 9999999999999999888888876554457999999999998643 23333333322 2345799999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++|+++.+.+.+++
T Consensus 168 i~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 168 VDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887653
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-31 Score=175.98 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=121.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. ..++.+... ..+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887654 445555443 3444444 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..+... ...+.+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCHH
Confidence 999999999998888776665433 23579999999999986432 2223222221 1235689999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=178.31 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=129.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.+.++|+|+|++|+|||||++++.+..+.. +.++.+..+ ..+...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345678999999999999999999999887654 345555443 3344443 589999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||++|.|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRAN 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCCC
Confidence 9999999999999999988888876654567999999999998653 22333333322 1245799999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++|+++.+.+.++
T Consensus 164 i~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 164 VDKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999988653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=182.14 Aligned_cols=162 Identities=19% Similarity=0.172 Sum_probs=123.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE---EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE---LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.....+||+++|++|+|||||++++.++.+.. +.++.+..+.. +......+.+|||+|++++...+..+++++|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 34567999999999999999999999888765 45666655432 222457899999999999999999999999999
Q ss_pred EEEEeCCCcccHHH-HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhcCcCccCCCce
Q 030113 89 IVVIDSTDRARISI-MKDELFRLLGHEDLQHSVVLIFANKQDLKDA--------------MTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 89 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (183)
|+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.++ ....+..+... ..++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~ 175 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-----QLGA 175 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-----HHTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-----HcCC
Confidence 99999999999998 566666665432 57999999999998642 22222222221 2244
Q ss_pred -EEEEeecccCCC-HHHHHHHHHHhhhccC
Q 030113 154 -HIQACSALTGDG-LVDGLEWISQRVTGKA 181 (183)
Q Consensus 154 -~~~~~S~~~~~g-i~~~~~~i~~~~~~~~ 181 (183)
++++|||++|.| ++++|+++++.+.++.
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 799999999998 9999999999887654
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-32 Score=179.76 Aligned_cols=160 Identities=24% Similarity=0.346 Sum_probs=125.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 4567999999999999999999999887653 445555433 4455555 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 99999999999999988888876542 479999999999986532 2222222221 12346999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 030113 167 VDGLEWISQRVTGK 180 (183)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (183)
+++++++.+.+.+.
T Consensus 159 ~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 159 EEMFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=173.23 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=115.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEc--CeEEEEEEcCCChhhHh-hHHhhccCCCEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYK--NIRFEAWDVGGQERLRT-SWATYYRGTHAVIV 90 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (183)
.+||+++|++|+|||||++++.+..... ..++.......+... ...+.+||+||++++.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998765433 222333333444444 46788999999998876 66777889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||+++++++..+..|+..+.......+.|+++|+||+|+.+. ....+..+.. ...+++++++||+++.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence 9999999999999999999877655557999999999998632 2333322222 22345899999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988765
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=175.46 Aligned_cols=158 Identities=19% Similarity=0.336 Sum_probs=125.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+..++|+++|++|+|||||++++.+..+.. +.++.+..+ ..+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887654 456655443 333433 468999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999999988888887776543 56899999999998643 22333333221 124579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++++++.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-32 Score=179.35 Aligned_cols=159 Identities=16% Similarity=0.247 Sum_probs=124.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce-eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN-VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+...+ ..+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999887654 33444432 23334443 5699999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 9999999999999888888765555679999999999985432 2222222221 12346999999999999999
Q ss_pred HHHHHHhhhc
Q 030113 170 LEWISQRVTG 179 (183)
Q Consensus 170 ~~~i~~~~~~ 179 (183)
++++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=182.30 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=119.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cccccCccccee--EEEEEcC--eEEEEEEcCCChh-hHhhHHhhccCCCE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VVTTHPTVGSNV--EELVYKN--IRFEAWDVGGQER-LRTSWATYYRGTHA 87 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~~~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (183)
...+||+++|++|+|||||++++.+.. +....++.+... ..+..++ ..+.+|||+|++. .......+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456999999999999999999998644 333334444332 3344444 5678999999887 45566777889999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||+++..+|..+..|+..+.......++|+++|+||+|+.+. ....+.. .+. ...++++++|||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~a----~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-ACA----VVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HHH----HHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HHH----HHcCCEEEEEeCCCCCC
Confidence 9999999999999999888887765433357999999999998642 2222211 111 12245799999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++|+++++.+..+
T Consensus 190 v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 190 VKELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=183.64 Aligned_cols=163 Identities=24% Similarity=0.347 Sum_probs=126.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEc----C-eEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYK----N-IRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~----~-~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
.....+||+++|++|+|||||+++++++.+.. ..++.+......... . ..+.+|||||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 45678999999999999999999999877654 456666655554441 1 78999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL-----KGKNYEYFEISAKTAH 160 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT-----TTCCCEEEEEBTTTTB
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCcEEEEecCCCC
Confidence 9999999999999988887777765432 2458999999999986532 222222222 3345689999999999
Q ss_pred CHHHHHHHHHHhhhccC
Q 030113 165 GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~ 181 (183)
|++++|+++.+.+.+..
T Consensus 161 gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 161 NFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTTHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999987754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=174.03 Aligned_cols=159 Identities=21% Similarity=0.292 Sum_probs=118.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. ..++.+..+. .+..+ ...+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 567999999999999999999999887654 4566665543 33333 468999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Confidence 9999999999998888877664322 246899999999998653 22333333221 234679999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=176.69 Aligned_cols=161 Identities=22% Similarity=0.371 Sum_probs=127.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEEcC------------------------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVYKN------------------------------ 60 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~~~------------------------------ 60 (183)
.++.++|+|+|++|+|||||++++++..+.. ..++.+..+.. +...+
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3578999999999999999999999887654 44555544332 22222
Q ss_pred ---------eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 61 ---------IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 61 ---------~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... ..|+++|+||+|+.
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcc
Confidence 789999999999999999999999999999999999999998888888776542 38999999999943
Q ss_pred C-CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 132 D-AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 132 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
. .....+..+.... .+++++++||+++.|++++++++.+.+.++.+
T Consensus 161 ~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 161 KFQVDILEVQKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp -CCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 2 2333444333322 34589999999999999999999998877644
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=173.94 Aligned_cols=160 Identities=23% Similarity=0.388 Sum_probs=126.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999887754 445555443 3344444 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||+++.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999998888887665432 257999999999998542 2223332222 2234689999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 162 ~l~~~l~~~~~~~ 174 (186)
T 2bme_A 162 EAFVQCARKILNK 174 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=174.94 Aligned_cols=160 Identities=24% Similarity=0.399 Sum_probs=127.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+|+|++|+|||||++++.+..+.. +.++.+..+. .+.. ....+.+|||||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 456999999999999999999999887764 4456565443 2333 3578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..... ...+++++++||+++.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999998888888876643 357999999999998643 2223332222 1234689999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-31 Score=175.95 Aligned_cols=160 Identities=22% Similarity=0.367 Sum_probs=126.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. ..++.+..+. .+.. ....+.+|||||++++...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 456999999999999999999999887654 4566665543 3333 3578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAKENINVK 173 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCHH
Confidence 9999999999988888877765432 3579999999999986432 2222222221 123579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++++++.+.+.++
T Consensus 174 ~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 174 QVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=177.07 Aligned_cols=160 Identities=23% Similarity=0.335 Sum_probs=124.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.+||+++|++|+|||||++++.+..+.. ..++.+..+ ..+...+ ..+.+|||||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 466999999999999999999999887654 345555433 3444443 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775532 357999999999998642 22333322221 224579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-32 Score=179.19 Aligned_cols=161 Identities=20% Similarity=0.360 Sum_probs=125.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
+.+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+|||||++.+...+..+++++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 4567999999999999999999999877654 445555443 3344444 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...+...... ..+++++++||+++.|+
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAKAGYNV 164 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCH
Confidence 99999999999998888887775432 2569999999999986432 2222222221 22458999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 030113 167 VDGLEWISQRVTGK 180 (183)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (183)
+++++++.+.+.++
T Consensus 165 ~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 165 KQLFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=177.40 Aligned_cols=160 Identities=21% Similarity=0.357 Sum_probs=99.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. +.++.+..+ ..+..++ ..+.+|||||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 457999999999999999999999877653 445665443 3444554 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999999988887776532 2579999999999996532 2333332221 224579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 160 ~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 160 NAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=179.01 Aligned_cols=163 Identities=21% Similarity=0.337 Sum_probs=116.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
...++.++|+++|++|+|||||++++.+..+.. +.++.+..+ ..+..+ ...+.+|||||++++...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 445678999999999999999999999887643 455555443 334444 367999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC--------CCCHHHHHhhcCcCccCCCceEEEEe
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD--------AMTPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
++++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .....+..+.. ...+++++++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~ 176 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLA-----MTYGALFCET 176 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHH-----HHHTCEEEEC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHH-----HHcCCeEEEe
Confidence 999999999999999888877766432 224689999999999852 11222222211 1224589999
Q ss_pred ecccCCCHHHHHHHHHHhhhcc
Q 030113 159 SALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
||++|.|++++|+++++.+.++
T Consensus 177 SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHTC-
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=176.44 Aligned_cols=161 Identities=24% Similarity=0.379 Sum_probs=127.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+|+|++|+|||||++++.+..+.. +.++.+..+ ..+...+ ..+.+|||||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 567999999999999999999999887754 445655444 3444443 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999999988887775433 3579999999999997532 2223222221 234579999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++.+.+.++.
T Consensus 160 ~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 160 DAFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=175.33 Aligned_cols=159 Identities=23% Similarity=0.361 Sum_probs=125.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+|+|++|+|||||++++.+..+.. ..++.+..+. .+... ...+.+|||||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 457999999999999999999999988754 4566665443 33333 478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECCCCCCHH
Confidence 9999999999998888887775432 3579999999999996532 2222222221 123579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=178.93 Aligned_cols=163 Identities=18% Similarity=0.273 Sum_probs=125.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..+.++|+|+|++|+|||||++++.+..+.. +.++.+..... +... ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4578999999999999999999999887654 44565544433 3333 36899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.+.. ...+...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999999988887777665432 12468999999999986432 2223222221 1235579999999999
Q ss_pred CHHHHHHHHHHhhhcc
Q 030113 165 GLVDGLEWISQRVTGK 180 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~ 180 (183)
|++++|+++.+.+.++
T Consensus 161 gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 161 NVEQAFQTIARNALKQ 176 (207)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=178.10 Aligned_cols=164 Identities=21% Similarity=0.297 Sum_probs=114.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc---CeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK---NIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+... ...+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4678999999999999999999999887654 445555433 333333 4789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCCCC---CHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKDAM---TPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.... ...+..+... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 999999999999988888877765432 23578999999999985321 2223222221 1235579999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
+|.|++++|+++.+.+.++.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999887653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=178.84 Aligned_cols=164 Identities=14% Similarity=0.184 Sum_probs=124.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.....++|+++|++|+|||||++++.++.+.. +.++.+..+.. +.. ....+.+|||||++++...+..+++.+|++
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34677999999999999999999999877654 44555544332 222 246899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-----QEWKCAFMETSAKMNYNV 158 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH-----HHhCCeEEEEecCCCCCH
Confidence 999999999998888777655543221 2468999999999986532 222222221 112357999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
+++++++.+.+.++.
T Consensus 159 ~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 159 KELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999887654
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-31 Score=171.20 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=123.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 45899999999999999999999887654 334444332 223333 46789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++|++++.|+++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHH
Confidence 9999999999888888777655444579999999999986532 2233222221 123469999999999999999
Q ss_pred HHHHHhhhc
Q 030113 171 EWISQRVTG 179 (183)
Q Consensus 171 ~~i~~~~~~ 179 (183)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T 2ce2_X 157 YTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998865
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-31 Score=178.35 Aligned_cols=161 Identities=22% Similarity=0.338 Sum_probs=124.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
....++|+|+|++|+|||||++++.+..+.. ..++.+..+ ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 3567999999999999999999999887643 445555443 3455555 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... ...+..+... ..+++++++||+++.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 99999999999988888877775532 2468999999999984332 2222222211 123469999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 171 ~l~~~l~~~~~~~ 183 (213)
T 3cph_A 171 EIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=174.65 Aligned_cols=164 Identities=17% Similarity=0.226 Sum_probs=115.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+...+ ..+.+|||||++++...+..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 34577999999999999999999999887654 334444333 2333433 6699999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+.... .+++++++||+++.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----YGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHH
Confidence 999999999999988888777765443457999999999998653 233333332221 23469999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++++++.+.+.+.+
T Consensus 172 ~l~~~l~~~~~~~~ 185 (190)
T 3con_A 172 DAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=178.63 Aligned_cols=166 Identities=22% Similarity=0.272 Sum_probs=117.4
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCC
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGT 85 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (183)
+.....+.+||+++|++|+|||||++++.++.+.. ..++.+..+. .+.. ....+.+|||||++++...+..+++++
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 34455788999999999999999999999877654 3444443322 2223 346677999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc---------Ccc-CCCceE
Q 030113 86 HAVIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL---------HSI-KNHDWH 154 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~---------~~~-~~~~~~ 154 (183)
|++++|||++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+....... ... .....+
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 9999999999999999887 4554444332 57999999999998654221111111000 000 112347
Q ss_pred EEEeecccCCCHHHHHHHHHHhh
Q 030113 155 IQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
++++||++|.|++++|+++.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999865
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=177.00 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=122.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++|+|||||++++.++.+.. ..++.+..+.. ... ....+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999887643 44555544432 222 236789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCC-CCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHE-DLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|++++.++.....|+..+.... ...+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEecCCCCcCHHH
Confidence 99999999888877776664421 124689999999999864322 22222211 12245799999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
+++++.+.+.+++
T Consensus 157 l~~~l~~~~~~~~ 169 (172)
T 2erx_A 157 LFQELLNLEKRRT 169 (172)
T ss_dssp HHHHHHHTCCSSC
T ss_pred HHHHHHHHHhhhh
Confidence 9999999887654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=182.66 Aligned_cols=162 Identities=25% Similarity=0.405 Sum_probs=129.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.+...+||+++|++|+|||||+++++.+.+.. +.++.+.+...... ....+.+|||||++.+...+..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 45677999999999999999999977665443 56777666554433 45789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+ ........+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988888886643 4789999999999965433221 111122345689999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++.+.+.+.+
T Consensus 164 ~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 164 KPFLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999987764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=182.68 Aligned_cols=161 Identities=23% Similarity=0.354 Sum_probs=122.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+|+|++|+|||||++++.+..+.. +.++.+..+ ..+...+ ..+.+|||||++++...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 567999999999999999999999887754 445555443 3445554 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||+++.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775432 357899999999998643 2223332222 1234689999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++.+.+.++.
T Consensus 165 ~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 165 KAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=179.55 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=96.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC--Ccc-cccCccc--ceeEEEEEc----CeEEEEEEcCCChhhHhhHHhhccCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG--EVV-TTHPTVG--SNVEELVYK----NIRFEAWDVGGQERLRTSWATYYRGT 85 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~--~~~-~~~~~~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (183)
...++|+++|++|+|||||++++.+. .+. .+.++.+ .....+... ...+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46689999999999999999999988 554 3455665 334445554 56899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCC-C--CCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKD-A--MTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
|++++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.+ . ....+..+... ..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEecc
Confidence 999999999999999999988888765433 25799999999999965 2 22333333322 12368999999
Q ss_pred cc-CCCHHHHHHHHHHhhhcc
Q 030113 161 LT-GDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~-~~gi~~~~~~i~~~~~~~ 180 (183)
++ +.|++++|+++.+.+.++
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp -------CHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHH
Confidence 99 999999999999987654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=175.99 Aligned_cols=160 Identities=23% Similarity=0.372 Sum_probs=120.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+|+|++|+|||||++++.++.+.. +.++.+... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 466999999999999999999999887654 445555333 3444444 78999999999999989999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775432 257999999999998543 2223322222 1234689999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (200)
T 2o52_A 177 EAFLKCARTILNK 189 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=175.58 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=119.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+...++|+++|++|+|||||++++.+..+.. +.++.+..+ ..+...+ ..+.+|||||++++...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4567999999999999999999999887754 335555443 2234443 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC---------ccCCCc-eEEEEe
Q 030113 90 VVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH---------SIKNHD-WHIQAC 158 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~ 158 (183)
+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.+.....+....+... .....+ .+++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999998884 454444332 2479999999999986542111111111000 001112 279999
Q ss_pred ecccCCCHHHHHHHHHHhhhccC
Q 030113 159 SALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
||++|.|++++++++.+.+.++.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=175.35 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=119.7
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.+.+||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ....+.+|||||++.+... ..+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 445678999999999999999999999887654 4566665432 2333 3478899999999887764 678899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeec-cc
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSA-LT 162 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~ 162 (183)
+++|||++++.++..+..|+..+..... ..+.|+++|+||+|+... ....+..+... ..+++++++|| ++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~ 169 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLD 169 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCc
Confidence 9999999999999999888887765321 146899999999998543 22233322221 12457999999 89
Q ss_pred CCCHHHHHHHHHHhhhcc
Q 030113 163 GDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~ 180 (183)
+.|++++|+++++.+.++
T Consensus 170 g~gv~~lf~~l~~~i~~~ 187 (187)
T 3c5c_A 170 FEHVQHVFHEAVREARRE 187 (187)
T ss_dssp SHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHHHhhC
Confidence 999999999999988653
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=173.01 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=121.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.+..+.. +.++.+..+. .+...+ ..+.+||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 467999999999999999999999887654 4455554432 333333 789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--------------CHHHHHhhcCcCccCCCc-eE
Q 030113 91 VIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAM--------------TPAEITDALSLHSIKNHD-WH 154 (183)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~ 154 (183)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. ...+..+... ..+ .+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~ 168 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK-----EIGACC 168 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH-----HHTCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH-----HcCCcE
Confidence 99999999999887 5655554432 479999999999996531 1111111111 112 26
Q ss_pred EEEeecccCCCHHHHHHHHHHhhhc
Q 030113 155 IQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++++||++|.|++++|+++.+.+.+
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=172.10 Aligned_cols=166 Identities=22% Similarity=0.263 Sum_probs=122.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.++.+.. +.++.+..+. .+... ...+.+|||||++++...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 567999999999999999999999877654 3455543332 23333 4678899999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhc---------CcCccCCCc-eEEEEee
Q 030113 91 VIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDAL---------SLHSIKNHD-WHIQACS 159 (183)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~S 159 (183)
|||++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..... ........+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999998887 4555554332 379999999999986432111100000 000011123 3899999
Q ss_pred cccCCCHHHHHHHHHHhhhccCC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
|++|.|++++|+++.+.+.+.++
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCCC
T ss_pred CCCccCHHHHHHHHHHHHhcccc
Confidence 99999999999999999987654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=178.22 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=115.4
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee--EEEE---EcCeEEEEEEcCCChhhHhhH---Hhhcc
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV--EELV---YKNIRFEAWDVGGQERLRTSW---ATYYR 83 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~D~~g~~~~~~~~---~~~~~ 83 (183)
..+++.+||+++|++|+|||||++++.+.............. .... .....+.+|||||++++.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 445678999999999999999999887754433222222221 2222 345899999999999987766 89999
Q ss_pred CCCEEEEEEeCCCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----HHHHHh----hcCcCccCCCce
Q 030113 84 GTHAVIVVIDSTDR--ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT----PAEITD----ALSLHSIKNHDW 153 (183)
Q Consensus 84 ~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----~~~~~~----~~~~~~~~~~~~ 153 (183)
++|++++|||++++ +++..+..|+...... ..+.|+++|+||+|+.+... ..++.. .+........++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999997 5667777777766322 25799999999999865311 122222 222222225578
Q ss_pred EEEEeecccCCCHHHHHHHHHHhh
Q 030113 154 HIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+++++||++ .|++++|+.+++.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 899999999 99999999999876
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=171.98 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=120.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+...++|+++|++|+|||||++++.+..+.. +.++.+..+. .+.. ....+.+|||||++.+...+..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4678999999999999999999999887754 4455554432 2222 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhcCcCccCCCceE
Q 030113 90 VVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDA--------------MTPAEITDALSLHSIKNHDWH 154 (183)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 154 (183)
+|||++++.++..+ ..|+..+... .++.|+++|+||+|+.+. ....+..+.... ....+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 157 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT 157 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH----cCCcE
Confidence 99999999999888 4555555332 247999999999998642 122222221111 12357
Q ss_pred EEEeecc-cCCCHHHHHHHHHHhhhc
Q 030113 155 IQACSAL-TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 155 ~~~~S~~-~~~gi~~~~~~i~~~~~~ 179 (183)
++++||+ ++.|++++|+++.+.+.+
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999 689999999999998765
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=172.55 Aligned_cols=164 Identities=18% Similarity=0.227 Sum_probs=120.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+...+||+++|++|+|||||++++.+..+.. +.++.+..+ ..+..+ ...+.+|||||++++...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 4567999999999999999999999887654 345555443 234444 368999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcC---------cCccCCCce-EEEEe
Q 030113 90 VVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALS---------LHSIKNHDW-HIQAC 158 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~ 158 (183)
+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.+.....+...... .......+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999998884 444444332 14799999999999975421111100000 000011223 79999
Q ss_pred ecccCCCHHHHHHHHHHhhhc
Q 030113 159 SALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~ 179 (183)
||++|.|++++++++.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988754
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=174.15 Aligned_cols=162 Identities=16% Similarity=0.190 Sum_probs=116.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+.++|+++|++|+|||||++++.+..+.. +.++.+..+. .+..++ ..+.+|||||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 34678999999999999999999999887654 3455554432 334444 5788999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhcCcCccCCCce
Q 030113 89 IVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDA--------------MTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (183)
++|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+. ....+....... ....
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~ 169 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE----IKAA 169 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh----cCCc
Confidence 9999999999999887 5665554432 47999999999998642 111122111110 1123
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++++||+++.|++++|+++.+.+.+.
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999988654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=174.10 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=120.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
....+||+++|++|+|||||++++.+..+.. +.++.+..+. .+.. ....+.+|||||++.+...+..+++++|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4577999999999999999999999987754 3455554442 2222 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhcCcCccCCCceE
Q 030113 90 VVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDA--------------MTPAEITDALSLHSIKNHDWH 154 (183)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 154 (183)
+|||++++.++..+ ..|+..+... ..+.|+++|+||+|+.+. ....+..+.... ....+
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 178 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT 178 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH----cCCCE
Confidence 99999999999888 4565555432 247999999999998632 122222111111 11357
Q ss_pred EEEeecc-cCCCHHHHHHHHHHhhhc
Q 030113 155 IQACSAL-TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 155 ~~~~S~~-~~~gi~~~~~~i~~~~~~ 179 (183)
+++|||+ ++.|++++|+++.+.+.+
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999998764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=175.61 Aligned_cols=165 Identities=16% Similarity=0.210 Sum_probs=103.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.++.+.. +.++.+..+ ..+... ...+.+|||||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999887654 334444333 223333 4589999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh---------cCcCccCCCc-eEEEEee
Q 030113 91 VIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA---------LSLHSIKNHD-WHIQACS 159 (183)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~S 159 (183)
|||++++.++..+. .|+..+... ..+.|+++|+||+|+.......+.... .........+ .+++++|
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999999999887 455555432 246899999999998654211111000 0000111123 3799999
Q ss_pred cccCCCHHHHHHHHHHhhhccC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
|++|.|++++|+++.+.+.+.+
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999987664
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=175.94 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=121.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..+.++|+++|++|+|||||++++.++.+.. +.++.+..+. .+..+ ...+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3578999999999999999999999887654 4456654432 23333 368999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----------CHHHHHhhcCcCccCCCceEEEEe
Q 030113 90 VVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAM----------TPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+.. ...+..+.... ....+++++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~ 159 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ----IGAAAYIEC 159 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH----HTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH----cCCceEEEc
Confidence 999999999999887 5655554332 479999999999986532 12222211111 112379999
Q ss_pred ecccCCCHHHHHHHHHHhhhccC
Q 030113 159 SALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
||++|.|++++|+++++.+.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC-
T ss_pred cCCCCCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999887654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=177.15 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=110.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE---EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE---ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..+.++|+++|++|+|||||++++.++.+.. +.++.+..+. ........+.+|||||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4678999999999999999999999877644 3344442221 12234567889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC------------HHHHHhhcCcCccCCCc-eEE
Q 030113 90 VVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMT------------PAEITDALSLHSIKNHD-WHI 155 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (183)
+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+... ..+..+.. ...+ .++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 157 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK-----KLIGAPAY 157 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH-----HHHTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH-----HHcCCCEE
Confidence 999999999998887 4555554332 3799999999999864321 11111111 1112 379
Q ss_pred EEeecccCCCHHHHHHHHHHhhhc
Q 030113 156 QACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+++||++|.|++++|+++.+.+.+
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-32 Score=182.82 Aligned_cols=162 Identities=22% Similarity=0.336 Sum_probs=118.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc--ceeEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG--SNVEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.+||+++|++|+|||||++++.+..+.. ..++.+ .....+..++ ..+.+|||||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 456999999999999999999999887654 334444 3344455554 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+..... ...........+++++++||+++.|++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVD---YTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCC---SCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCC---HHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 9999999999999998888876543 3579999999999986432110 00111111223457999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|+++.+.+.++
T Consensus 187 ~~~l~~~l~~~ 197 (199)
T 3l0i_B 187 FMTMAAEIKKR 197 (199)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=174.25 Aligned_cols=163 Identities=20% Similarity=0.300 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC--Cccc-ccCcccceeEEEEE-------cCeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG--EVVT-THPTVGSNVEELVY-------KNIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~--~~~~-~~~~~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
.+||+++|++|||||||++++++. .+.. +.+|.+..+..... ....+.+|||+|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 3333 45677766544332 4678999999999999988899999999
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCce----EEEEeecc
Q 030113 87 AVIVVIDSTDR-ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDW----HIQACSAL 161 (183)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~S~~ 161 (183)
++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+...................++ +++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 47888888888765432 4689999999999865322111111111111122223 49999999
Q ss_pred cCC-CHHHHHHHHHHhhhccC
Q 030113 162 TGD-GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~-gi~~~~~~i~~~~~~~~ 181 (183)
++. |++++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC-
T ss_pred cCchhHHHHHHHHHHHHhccc
Confidence 996 99999999999887764
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=174.32 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=113.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cccccCccccee--EEEEEcC--eEEEEEEcCCChh-hHhhHHhhccCCCE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VVTTHPTVGSNV--EELVYKN--IRFEAWDVGGQER-LRTSWATYYRGTHA 87 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~~~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (183)
...+||+++|++|+|||||++++.+.. +....++.+... ..+..++ ..+.+|||+|++. .......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 567999999999999999999998633 333333344332 3344444 5678999999876 44456677888999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||+++..+|.....|+..+.......+.|+++|+||+|+... ....+. ..+. ...++++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~a----~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAXA----VVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHHH----HHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHHH----HHhCCceEEeccccCCC
Confidence 9999999999999998888776654333357899999999998542 222211 1111 12345799999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030113 166 LVDGLEWISQRVTG 179 (183)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (183)
++++|+++++.+..
T Consensus 159 v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 159 VKELFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=164.30 Aligned_cols=163 Identities=21% Similarity=0.171 Sum_probs=120.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccc-c--CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-H--PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+.++|+++|++|+|||||++++.+..+... . .+.......+..++..+.+|||||++++...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 346789999999999999999999998876542 2 2333445567778889999999999999888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC--ccCC--CceEEEEeecccCCC
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH--SIKN--HDWHIQACSALTGDG 165 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~S~~~~~g 165 (183)
+|+|++++...... ..+.... ..+.|+++|+||+|+.+. ...++...+... .... ...+++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999885332222 2223322 146899999999999764 233333333221 1111 237899999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++++++.+.+...+
T Consensus 158 v~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 158 LDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhc
Confidence 9999999999877654
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-30 Score=182.07 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChhhHh---hHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQERLRT---SWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii~v 91 (183)
||+++|+.|+|||||++++.++..+. ..+|.++....+. ..+++++|||+||+++.. .+..++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887665433 4578887776652 458999999999999964 468899999999999
Q ss_pred EeCCCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhcCcCccCC----CceEEEEeecc
Q 030113 92 IDSTDR--ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP----AEITDALSLHSIKN----HDWHIQACSAL 161 (183)
Q Consensus 92 ~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~S~~ 161 (183)
||+++. +++.....|+..+... .++.|+++++||+|+..+... +++.+..+...++. .+++|++|||+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 2222233333333221 257999999999999754321 23444333333332 57899999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
+ .||.++|..+++.+.++.
T Consensus 158 d-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp S-SHHHHHHHHHHTTSSTTH
T ss_pred C-CcHHHHHHHHHHHHHhhH
Confidence 8 589999999999887653
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-29 Score=166.84 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=109.8
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCc-ccccCcccceeE--EEEEcCeEEEEEEcCC----------ChhhHhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE--ELVYKNIRFEAWDVGG----------QERLRTSW 78 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~D~~g----------~~~~~~~~ 78 (183)
......++|+++|++|+|||||++++.+..+ ....++.+.+.. .... +.++.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3445789999999999999999999998874 334444443322 2222 34799999999 77777778
Q ss_pred HhhccCC---CEEEEEEeCCCcccHHHHH--HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCce
Q 030113 79 ATYYRGT---HAVIVVIDSTDRARISIMK--DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 79 ~~~~~~~---d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (183)
..+++.+ |++++|+|++++.++.... .++.. .+.|+++|+||+|+.+........+.+..........
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 8887776 9999999999887765532 22222 4689999999999976543333222222211123467
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhh
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+++++||+++.|++++++++.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999998875
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=168.48 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=112.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEEcCeEEEEEEcCCC------hhh---HhhHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVYKNIRFEAWDVGGQ------ERL---RTSWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~~ 82 (183)
.+.++|+|+|++|+|||||++++++..+... ..+.......+......+.+|||||+ +.. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 4679999999999999999999998876421 12344445555667889999999998 331 12234457
Q ss_pred cCCCEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhcCcCccCCC--ceEEEE
Q 030113 83 RGTHAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-ITDALSLHSIKNH--DWHIQA 157 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ 157 (183)
..+|++++|+|++++.++. ....++..+... ..+.|+++|+||+|+.+...... ...... ...... .+++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSS 183 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEE
Confidence 7889999999999987764 233455555443 24689999999999965432211 111111 111112 268999
Q ss_pred eecccCCCHHHHHHHHHHhhhcc
Q 030113 158 CSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+||++|.|++++|+++.+.+.+.
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-29 Score=166.55 Aligned_cols=160 Identities=20% Similarity=0.230 Sum_probs=115.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEE-EEEcCeEEEEEEcCC----------ChhhHhhHHhh
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE-LVYKNIRFEAWDVGG----------QERLRTSWATY 81 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 81 (183)
.....++|+++|++|+|||||++++.+.......++.+.+... ....+.++.+||||| ++.+...+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 3456789999999999999999999998866555555544322 222356789999999 66677777777
Q ss_pred ccCC---CEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEE
Q 030113 82 YRGT---HAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 82 ~~~~---d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
++.+ |++++|+|+++..+.. .+..|+... +.|+++|+||+|+.+........+...........++++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 7665 9999999998764432 233333332 589999999999976544433333332222222456799
Q ss_pred EeecccCCCHHHHHHHHHHhhhc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++||++|.|++++|+++.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998865
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-31 Score=179.18 Aligned_cols=164 Identities=24% Similarity=0.279 Sum_probs=119.6
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE---EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE---ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
+...+.++|+++|++|+|||||++++.++.+.. ..++.+..+. ........+.+|||||++++...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 445678999999999999999999999877644 2334332221 122245678899999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH---------HHHhhcCcCccCCCce-EEE
Q 030113 88 VIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA---------EITDALSLHSIKNHDW-HIQ 156 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~ 156 (183)
+++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.+..... .+............+. +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999998887 444444332 1 379999999999986532111 1111111222223344 799
Q ss_pred EeecccCCCHHHHHHHHHHhh
Q 030113 157 ACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~ 177 (183)
++||++|.|++++|+++.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998765
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=175.00 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=122.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC--cc--cccCcccceeEEEEE-cCeEEEEEEcCCChhh-----HhhHHhhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE--VV--TTHPTVGSNVEELVY-KNIRFEAWDVGGQERL-----RTSWATYYRGT 85 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~--~~--~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 85 (183)
..+||+++|++|+|||||++++.++. +. .+.+|.+.....+.. +...+.+|||||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 46899999999999999999998773 22 356788888777775 6789999999999988 67788889999
Q ss_pred CEEEEEEeCCCcccHHHHHHHH---HHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH---HHhhcCcCccCCC---ceEEE
Q 030113 86 HAVIVVIDSTDRARISIMKDEL---FRLLGHEDLQHSVVLIFANKQDLKDAMTPAE---ITDALSLHSIKNH---DWHIQ 156 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~ 156 (183)
|++++|||++++.++..+..|. ..+... .++.|+++|+||+|+.......+ ............. .++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999999998886553 333222 25799999999999875222210 1111111111222 47899
Q ss_pred EeecccCCCHHHHHHHHHHhhhcc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
++||++ .|+.++|..+++.+...
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred EeeecC-ChHHHHHHHHHHHHcCC
Confidence 999999 89999999998876543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=160.18 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=109.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChhhHh--------hHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQERLRT--------SWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 82 (183)
++..+|+++|++|+|||||++++.+...... ..+.......+..++..+.+|||||+.+... ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 3568999999999999999999998764321 2233344456667788899999999864211 122457
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+.+|++++|+|++++.++.. ..|+..+.... ..++|+++|+||+|+.+... ........+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999998887653 34554444322 24689999999999853211 11122456899999999
Q ss_pred CCCHHHHHHHHHHhhhcc
Q 030113 163 GDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~ 180 (183)
+.|++++|+++.+.+...
T Consensus 150 g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp CTTHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHhhhc
Confidence 999999999999887543
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=156.98 Aligned_cols=148 Identities=20% Similarity=0.141 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
++|+++|++|+|||||++++.+..+... ..+.......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 6899999999999999999998764322 2233344556667788999999999876 4566777889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++++|+|++++.+.. ..++...+.. .+.|+++|+||+|+.+.. .+.. ........+++++||+++.|+
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~-----~~~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLG-----PLYGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCG-----GGGGGSSCSCEECBTTTTBSH
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--HhHH-----HHHhCCCCCeEEEecccCCCh
Confidence 999999999864432 2233333222 468999999999986431 1111 111111126999999999999
Q ss_pred HHHHHHHHHhh
Q 030113 167 VDGLEWISQRV 177 (183)
Q Consensus 167 ~~~~~~i~~~~ 177 (183)
+++|+++.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999876
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=154.37 Aligned_cols=148 Identities=25% Similarity=0.296 Sum_probs=106.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccC--cccceeEEEEEcCeEEEEEEcCCChhhH------hhHHhhcc--C
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THP--TVGSNVEELVYKNIRFEAWDVGGQERLR------TSWATYYR--G 84 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 84 (183)
+.++|+++|++|+|||||++++.+..+.. ..+ +.......+...+..+.+|||||+.++. .....++. +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 45899999999999999999999865432 222 2333445566678899999999988763 33455554 8
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEeec
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+|++++|+|+++.++ ...|+..+.. .+.|+++|+||+|+.... ...++.+.+ +++++++||
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------CCCEEEEEc
Confidence 999999999987543 3345555433 368999999999974321 122222222 246999999
Q ss_pred ccCCCHHHHHHHHHHhhh
Q 030113 161 LTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~ 178 (183)
++|.|++++|+++.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=169.50 Aligned_cols=165 Identities=20% Similarity=0.096 Sum_probs=121.8
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEc-CeEEEEEEcCCChh----------hHh
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYK-NIRFEAWDVGGQER----------LRT 76 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~D~~g~~~----------~~~ 76 (183)
..+...-.|+++|.+|+|||||+|++++..+...++ |........... +.++.+|||||+.+ +..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 345677899999999999999999999988654333 333333445566 89999999999844 335
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhcCcCccCCCceEE
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK-DAMTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
.+..+++.+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+. +.....+..+.+.... ....++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i 158 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEI 158 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeE
Confidence 667788999999999999998887776655555543 468999999999986 3333333333332211 123569
Q ss_pred EEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 156 QACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
+++||++|.|++++++++.+.+.+.++
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEP 185 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCC
Confidence 999999999999999999999876543
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=166.83 Aligned_cols=158 Identities=18% Similarity=0.081 Sum_probs=114.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChh--------hHhhHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQER--------LRTSWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (183)
.+..+|+++|++|+|||||+|++++..+...++ |.......+..++.++.+|||||..+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999987653222 22222233456789999999999765 556667889
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+++|++++|+|++++.+.. ..++...+.... .+.|+++|+||+|+.+... ..+..+.+ ....+++++||+
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~ 155 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSAL 155 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTT
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCC
Confidence 9999999999998875433 345444433321 4689999999999865422 11222222 233469999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
+|.|++++++++.+.+.+.+
T Consensus 156 ~g~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 156 DERQVAELKADLLALMPEGP 175 (301)
T ss_dssp CHHHHHHHHHHHHTTCCBCC
T ss_pred CCCCHHHHHHHHHHhcccCC
Confidence 99999999999999876543
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=168.66 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=118.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
...++|+++|++|+|||||++++.++.+.. +.++.+..+. .+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 456999999999999999999999877644 3445443332 233343 566799999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--------------CHHHHHhhcCcCccCCCc-eE
Q 030113 91 VIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAM--------------TPAEITDALSLHSIKNHD-WH 154 (183)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~ 154 (183)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. ...+..+.. ...+ .+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 305 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-----KEIGAVK 305 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH-----HHTTCSE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH-----HHcCCcE
Confidence 99999999998887 4444443322 379999999999985431 111111111 1123 37
Q ss_pred EEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 155 IQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
++++||++|.|++++|+++.+.+.+.
T Consensus 306 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 306 YLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999988654
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=162.57 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCC-----------ChhhHhhHHhhccC-
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGG-----------QERLRTSWATYYRG- 84 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 84 (183)
++|+++|++|+|||||++++.+..+.. ..++.......+... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999887643 334434444444444 789999999 67777777777776
Q ss_pred CCEEEEEEeCCCcccHHHHH-HHHHH--------HhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCce
Q 030113 85 THAVIVVIDSTDRARISIMK-DELFR--------LLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~-~~~~~--------~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 153 (183)
++++++|+++.+..++.... .|... +.......+.|+++|+||+|+.... ...++...++... .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 66666666666667776653 33221 1111112468999999999997643 1122222222110 00123
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
+++++||++|.|++++|+++.+.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 58999999999999999999999877653
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=161.95 Aligned_cols=165 Identities=18% Similarity=0.141 Sum_probs=109.4
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCc-ccccCccc----ceeEEEE-EcCeEEEEEEcCCC----------hhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVG----SNVEELV-YKNIRFEAWDVGGQ----------ERLR 75 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~----~~~~~~~-~~~~~~~~~D~~g~----------~~~~ 75 (183)
..+...++|+|+|++|+|||||++++++... .....+.+ .....+. .++..+.+|||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3445679999999999999999999998862 23322222 2233332 24588999999993 4445
Q ss_pred hhHHhhccC---CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC---
Q 030113 76 TSWATYYRG---THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK--- 149 (183)
Q Consensus 76 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 149 (183)
..+..+++. +|++++|+|++++.+. ....+...+.. .+.|+++|+||+|+.+.....+..+.+......
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTE--LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 566666655 6789999999876432 22222233222 468999999999987543322222211111111
Q ss_pred ---CCceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 150 ---NHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 150 ---~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
....+++++||++|.|+++++++|.+.+....
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 35678999999999999999999999887653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=158.30 Aligned_cols=159 Identities=22% Similarity=0.366 Sum_probs=120.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. +.++.+.. ...+...+ +.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 456899999999999999999999987654 34555543 33455554 57889999999998888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|+++..++..+..|+..+... ...+.|+++++||+|+.+.. ...+..... ...++.++++|++++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999998888877777655332 22468999999999986432 222222211 2245679999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++++++.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-27 Score=166.16 Aligned_cols=162 Identities=12% Similarity=0.090 Sum_probs=111.8
Q ss_pred CCCcceEEEEEcCC---------CCCHHHHHHHhcc---CCccc-ccCcc-ccee--E----------------EEEEcC
Q 030113 13 FPGKDYKIIIVGLD---------NAGKTTTLYKLHL---GEVVT-THPTV-GSNV--E----------------ELVYKN 60 (183)
Q Consensus 13 ~~~~~~~i~viG~~---------~~GKStl~~~l~~---~~~~~-~~~~~-~~~~--~----------------~~~~~~ 60 (183)
...+.+||+++|++ |||||||++++.+ ..+.. +.++. +..+ . .+....
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34577999999999 9999999999998 33322 22332 2110 0 023356
Q ss_pred eEEEEEE-----------------------cCCChhhHhhHHhhcc---------------------CCCEEEEEEeCCC
Q 030113 61 IRFEAWD-----------------------VGGQERLRTSWATYYR---------------------GTHAVIVVIDSTD 96 (183)
Q Consensus 61 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~ 96 (183)
+.+.+|| ++|++++...+..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 6666666666667766 7999999999999
Q ss_pred c--ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 97 R--ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 97 ~--~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+ .++..+..|+..+.......+.|+++|+||+|+.......+..+.. . ...+++++++||+++.|++++|++++
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~---~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA-L---SKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHH-H---TSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHH-H---hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 8999998888877654223469999999999985432222211111 1 11356799999999999999999999
Q ss_pred Hhhh
Q 030113 175 QRVT 178 (183)
Q Consensus 175 ~~~~ 178 (183)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8774
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-27 Score=164.61 Aligned_cols=149 Identities=22% Similarity=0.214 Sum_probs=109.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-cc--CcccceeEEEEEcCeEEEEEEcCCChhhHh------hHHhhc--c
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-TH--PTVGSNVEELVYKNIRFEAWDVGGQERLRT------SWATYY--R 83 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 83 (183)
.+.++|+++|++|+|||||++++.+..+.. .. .+.......+...+..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 567999999999999999999999876532 22 233334445566789999999999876643 224444 5
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEee
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+|++++|+|+++.++. ..++..+.. .+.|+++|+||+|+.+.. ...++.+.+ +++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEEE
Confidence 89999999999987543 234455543 368999999999974321 122333332 35799999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
|++|.|++++++++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999999775
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-26 Score=151.66 Aligned_cols=152 Identities=24% Similarity=0.282 Sum_probs=111.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc-cccC--cccceeEEEEEcCeEEEEEEcCCChhhH------hhHHhhcc--
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHP--TVGSNVEELVYKNIRFEAWDVGGQERLR------TSWATYYR-- 83 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 83 (183)
.+.++|+++|++|+|||||++++.+..+. ...+ +.......+..++..+.+|||||+..+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 46799999999999999999999986542 2223 2334445566778999999999988763 34555554
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEee
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+|++++|+|.++ +.....|+..+.. .+.|+++|+||+|+.... ...++.+.+ +++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh--------CCCeEEEE
Confidence 5999999999865 4555666666654 468999999999974321 222222222 24699999
Q ss_pred cccCCCHHHHHHHHHHhhhccC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
|+++.|++++|+++.+.+.+..
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999887654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-27 Score=164.52 Aligned_cols=144 Identities=19% Similarity=0.164 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-cc--CcccceeEEEEEcCeEEEEEEcCCChhhHh----------hHHhhc--
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-TH--PTVGSNVEELVYKNIRFEAWDVGGQERLRT----------SWATYY-- 82 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 82 (183)
.+|+++|++|+|||||+|++.+..... .. .|.......+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 489999999999999999999876422 22 333344556677888999999999876543 445566
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEe
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
.++|++++|+|+++.++...+..+ +.. .+.|+++|+||+|+.+.. ....+.+.+ +++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEE
Confidence 899999999999886554433332 222 368999999999975322 122232222 3579999
Q ss_pred ecccCCCHHHHHHHHHHh
Q 030113 159 SALTGDGLVDGLEWISQR 176 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~ 176 (183)
||++|.|++++++++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999886
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-27 Score=166.54 Aligned_cols=150 Identities=18% Similarity=0.185 Sum_probs=109.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-cc--CcccceeEEEEEcCeEEEEEEcCCChhhH----------hhHHhhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-TH--PTVGSNVEELVYKNIRFEAWDVGGQERLR----------TSWATYY 82 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~ 82 (183)
+.++|+++|++|+|||||+|++.+..+.. .. .|.......+...+..+.+|||||+.++. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 46899999999999999999999887422 22 23334445566677899999999987654 1223333
Q ss_pred --cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEE
Q 030113 83 --RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
+.+|++++|+|+++.++......++... +.|+++|+||+|+.+.. ....+.+.+ +++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCEE
Confidence 7899999999998866554444444433 58999999999975322 122222222 35799
Q ss_pred EeecccCCCHHHHHHHHHHhhhcc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
++||++|.|++++++++.+.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999887654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=151.75 Aligned_cols=157 Identities=22% Similarity=0.380 Sum_probs=119.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. +.++.+... ..+..++ ..+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 345899999999999999999999987653 556666443 3455554 45677999999998888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|.++..++..+..|+..+... ...+.|+++++||.|+.+.. ...+.. .+. ...++.++++|++++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l~----~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AFA----EKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HHH----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHH-HHH----HHcCCEEEEEeCCCCCCHH
Confidence 999999998888777776654332 22468999999999986422 222222 221 2245679999999999999
Q ss_pred HHHHHHHHhh
Q 030113 168 DGLEWISQRV 177 (183)
Q Consensus 168 ~~~~~i~~~~ 177 (183)
++++++.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-27 Score=163.41 Aligned_cols=149 Identities=21% Similarity=0.203 Sum_probs=104.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc-ccccCcccceeEEEEEc-CeEEEEEEcCCChhhH------hhHHhhcc--CC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVEELVYK-NIRFEAWDVGGQERLR------TSWATYYR--GT 85 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~------~~~~~~~~--~~ 85 (183)
..++|+++|++|||||||++++.+... ....+..........+. +..+.+|||||+.++. .....++. ++
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 357999999999999999999998652 22223222222222222 6789999999988764 34555665 69
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA----MTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+... .....+.+.+ +++++++||+
T Consensus 82 d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA~ 146 (272)
T 3b1v_A 82 DSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSAL 146 (272)
T ss_dssp SEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBTT
T ss_pred CEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEcc
Confidence 999999999876543 334444432 36899999999997432 1223333332 3579999999
Q ss_pred cCCCHHHHHHHHHHhhhc
Q 030113 162 TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~ 179 (183)
+|.|++++|+++.+.+.+
T Consensus 147 ~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTBSHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987653
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-26 Score=167.45 Aligned_cols=164 Identities=16% Similarity=0.072 Sum_probs=115.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccccc----Cccc-------------------ceeEEEEEcCeEEEEEEcC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVG-------------------SNVEELVYKNIRFEAWDVG 69 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~~~~D~~ 69 (183)
..++.++|+++|++++|||||+++|.+....... .+.+ ............+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4567899999999999999999999875432210 0000 0000001122689999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc--Cc
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL--HS 147 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~--~~ 147 (183)
|++++...+..++..+|++++|+|++++.++.....++..+... ...|+++|+||+|+.+.....+..+.+.. ..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887666666666554322 22589999999999754322222222211 11
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.....++++++||++|+|+++++++|.+.+..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 12246789999999999999999999987754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-26 Score=170.32 Aligned_cols=159 Identities=19% Similarity=0.108 Sum_probs=115.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCC----------hhhHhhHH-h
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQ----------ERLRTSWA-T 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-~ 80 (183)
..++|+++|++|+|||||+|++++....... .|.......+..++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999988754222 2333444566778889999999997 44444332 4
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEe
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+++.+|++++|+|++++.++... .++..+.. .++|+++|+||+|+.+... ..+..+.+.........++++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 78889999999999998887665 34444432 4699999999999876433 23333333332223346689999
Q ss_pred ecccCCCHHHHHHHHHHhhhc
Q 030113 159 SALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~ 179 (183)
||++|.|++++|+.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887764
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=169.44 Aligned_cols=158 Identities=22% Similarity=0.253 Sum_probs=109.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEE------------EcCeEEEEEEcCCChhhHhhHHh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELV------------YKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
..+.+||+++|++|+|||||++++.+..+.. ..++.+..+.... .....+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4677999999999999999999999887644 4567666655432 12589999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEe
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+++.+|++++|+|+++.+.. ..|+..+.... .+.|+++|+||+|+.+.. ...+..+... ..+.+++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEE
Confidence 99999999999999876544 44444443322 368999999999986533 2333333332 223469999
Q ss_pred ecccCCCHHHHHHHHHHhhhccC
Q 030113 159 SALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
||++|.|++++++++.+.+.+.+
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCTT
T ss_pred ecCcccCHHHHHHHHHHHHhccc
Confidence 99999999999999999887654
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=166.32 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=97.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChhhHhhH--------Hhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW--------ATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~ 83 (183)
..++|+++|++|+|||||+|++.+.+.... ..|.......+..++..+.+|||||+.++...+ ..+++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 568999999999999999999998764322 233344456677789999999999987765443 34678
Q ss_pred CCCEEEEEEeCCCcccHHH---HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 84 GTHAVIVVIDSTDRARISI---MKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
.+|++++|+|++++.++.. ...++..+ .+.|+++|+||+|+.+...... +.+... ...+++++||
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSA 379 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISA 379 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBT
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEE
Confidence 9999999999999877642 33333332 2689999999999976543221 111111 0136999999
Q ss_pred ccCCCHHHHHHHHHHhhh
Q 030113 161 LTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~ 178 (183)
++|.|++++++++.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999999886
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=157.65 Aligned_cols=134 Identities=18% Similarity=0.306 Sum_probs=107.2
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCC----------cccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD----------RARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (183)
+|.|+....+..+.+.+.+|||+|+++++..|..++++++++|+|+|+++ .+++.+...|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 35666667777889999999999999999999999999999999999998 56799999999999887555
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHHHHHhhcCc-----Ccc-CCCceEEEEeecccCCCHHHHHHHH
Q 030113 117 QHSVVLIFANKQDLKD-----------------AMTPAEITDALSL-----HSI-KNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~-----------------~~~~~~~~~~~~~-----~~~-~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
.+.|+++++||.|+.. .....+..+.... ... ....+.+++|||+++.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 6799999999999842 1233333332221 000 1356789999999999999999999
Q ss_pred HHhhhcc
Q 030113 174 SQRVTGK 180 (183)
Q Consensus 174 ~~~~~~~ 180 (183)
.+.+.+.
T Consensus 339 ~~~i~~~ 345 (353)
T 1cip_A 339 TDVIIKN 345 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=167.43 Aligned_cols=161 Identities=19% Similarity=0.143 Sum_probs=114.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCC----------ChhhHhhHH-
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGG----------QERLRTSWA- 79 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 79 (183)
...++|+++|++|+|||||++++.+...... ..+.......+..++..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 4569999999999999999999997763222 2233344456777888999999999 677666544
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEE
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.+++.+|++++|+|++++.+. ...++...+.. .++|+++|+||+|+.+... ..+..+...........+++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~--~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIE--QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCH--HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcCH--HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 478899999999999876432 22333333222 4689999999999875432 2333333333322234568999
Q ss_pred eecccCCCHHHHHHHHHHhhhcc
Q 030113 158 CSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+||++|.|++++|+++.+.+.+.
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999877543
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=152.64 Aligned_cols=135 Identities=17% Similarity=0.249 Sum_probs=108.2
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC----------CcccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST----------DRARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (183)
+|.|+....+..+.+.+++|||+||++++..|..++++++++|+|+|++ +.+++.+...|+..+......
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 4677777788889999999999999999999999999999999999654 677899999999999887666
Q ss_pred CCCeEEEEEeCCCCCC------------------CCCHHHHHhhc-----CcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 117 QHSVVLIFANKQDLKD------------------AMTPAEITDAL-----SLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
.+.|+++++||.|+.. ....++..+.. .........+.+++|||+++.||+++|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 7899999999999743 12223322221 111123456789999999999999999999
Q ss_pred HHhhhccC
Q 030113 174 SQRVTGKA 181 (183)
Q Consensus 174 ~~~~~~~~ 181 (183)
.+.+.+++
T Consensus 313 ~~~Il~~~ 320 (327)
T 3ohm_A 313 KDTILQLN 320 (327)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99887654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-25 Score=162.98 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccce----eEEEEEcCeEEEEEEcCCCh--------hhHhhHHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN----VEELVYKNIRFEAWDVGGQE--------RLRTSWATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 85 (183)
++|+++|.+|+|||||+|++.+.......++.+++ +....+.+..+.+|||||++ .+...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999987765544455543 33344467889999999985 5677788889999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|++++|+|++++.+.. ..++...+.. .++|+++|+||+|+.+... ... ........+++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~------~~~-~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA------NIY-DFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-----------CCC-SSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh------hHH-HHHHcCCCCeEEEeCcCCCC
Confidence 9999999999876543 3445555443 4689999999999864311 111 11111112589999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++++++.+.+.+.
T Consensus 152 v~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHHTGGGC
T ss_pred hHHHHHHHHHhcCcc
Confidence 999999999988753
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-24 Score=149.17 Aligned_cols=151 Identities=21% Similarity=0.209 Sum_probs=110.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccC--cccceeEEEEEcCeEEEEEEcCCChhhHh------hHHhhc--cC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THP--TVGSNVEELVYKNIRFEAWDVGGQERLRT------SWATYY--RG 84 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 84 (183)
+.++|+++|++|+|||||++++.+..+.. ..+ +.......+.+.+..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 46899999999999999999999887622 223 33344455666888999999999877654 455555 68
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD----AMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+|++++|+|+++.. ....++..+... ...|+++|+||+|+.+ ......+.+.+ +++++++|+
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBG
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEe
Confidence 99999999998753 333444444432 2389999999999642 12233333333 346999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|.|++++++++.+.+.+.
T Consensus 148 ~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999887654
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-26 Score=157.20 Aligned_cols=117 Identities=26% Similarity=0.329 Sum_probs=94.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccC----C
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRG----T 85 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 85 (183)
..+.++|+++|++|+|||||++++.+..+... .++.+..+ ....+.+|||||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 45779999999999999999999998876442 23332222 56789999999999998888888877 8
Q ss_pred CEEEEEEeCC-CcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCCCCC
Q 030113 86 HAVIVVIDST-DRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKDAMT 135 (183)
Q Consensus 86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~~~~ 135 (183)
|++++|+|++ ++.++.....|+..++... ...+.|+++|+||+|+.....
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8888988888888876532 225799999999999977654
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-25 Score=159.60 Aligned_cols=159 Identities=20% Similarity=0.167 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--c-ccCcccceeEEEEEcC-eEEEEEEcCCChh----hHhhHH---hhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--T-THPTVGSNVEELVYKN-IRFEAWDVGGQER----LRTSWA---TYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~----~~~~~~---~~~~~~d 86 (183)
.+|+++|.+|+|||||++++++.... . ...|...+...+.+.+ ..+.+|||||... ...+.. ..++.++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 36889999999999999999876532 1 2245555555566664 7899999999533 222333 3345699
Q ss_pred EEEEEEeCCC---cccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecc
Q 030113 87 AVIVVIDSTD---RARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
++++|+|+++ ..++..+..|+..+..+.. ..++|+++|+||+|+..... ..++.+.+.. ..+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence 9999999998 6778888777777655422 35799999999999864311 1122222221 1469999999
Q ss_pred cCCCHHHHHHHHHHhhhccCC
Q 030113 162 TGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++.|+++++++|.+.+.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSCCC
T ss_pred CCcCHHHHHHHHHHHHhhCcc
Confidence 999999999999999887654
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-24 Score=157.76 Aligned_cols=161 Identities=19% Similarity=0.083 Sum_probs=105.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEEEEE---------------c--------CeEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEELVY---------------K--------NIRFE 64 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~~~~---------------~--------~~~~~ 64 (183)
++..++|+++|+.++|||||+++|.+..... ...|....+..... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4678999999999999999999998543211 11244443332221 1 16899
Q ss_pred EEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----HHHHH
Q 030113 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT----PAEIT 140 (183)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----~~~~~ 140 (183)
+|||||++++...+...+..+|++++|+|++++.+.......+..+... ...|+++++||+|+.+... ..++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999999988888889999999999999653222222222222111 2257999999999976432 22333
Q ss_pred hhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 141 DALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+.+... ....++++++||++|+|+++++++|.+.+..
T Consensus 162 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 162 EFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 333221 1245689999999999999999999987754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=155.04 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=115.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChhhH---------hhHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQERLR---------TSWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 82 (183)
...++|+++|++|+|||||++++.+..... ...+.......+...+..+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 467899999999999999999999876422 2344455556666678899999999974321 2223445
Q ss_pred cCCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 83 RGTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
..+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+.......+..+... ..+.+++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5799999999998876 6777777777665432 2689999999999865422222222211 23457999999
Q ss_pred ccCCCHHHHHHHHHHhhhc
Q 030113 161 LTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~ 179 (183)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=160.80 Aligned_cols=150 Identities=20% Similarity=0.151 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChh---------hHhhHHhhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQER---------LRTSWATYYRG 84 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 84 (183)
.+|+++|.+|||||||+|++.+....... .|....+..+.+.+..+.+|||||.+. +...+..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999987643322 233345667778889999999999653 45567788999
Q ss_pred CCEEEEEEeCCCcccHHH--HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 85 THAVIVVIDSTDRARISI--MKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+|++++|+|++++.+... +..++.. .++|+++|+||+|+.+.. ..+....+. .....+++++||++
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~-------~~~p~ilv~NK~D~~~~~-~~~~~~~~~----~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK-------STVDTILVANKAENLREF-EREVKPELY----SLGFGEPIPVSAEH 149 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH-------HTCCEEEEEESCCSHHHH-HHHTHHHHG----GGSSCSCEECBTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEeCCCCcccc-HHHHHHHHH----hcCCCCEEEEeccC
Confidence 999999999987654332 3333332 258999999999974220 111101111 11111489999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030113 163 GDGLVDGLEWISQRVTG 179 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~ 179 (183)
|.|++++++++.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999998864
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=161.89 Aligned_cols=150 Identities=25% Similarity=0.313 Sum_probs=112.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCCh-hhH--------hhHHhhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQE-RLR--------TSWATYY 82 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~~ 82 (183)
..++|+++|.+|+|||||+|++.+.+... ...|.......+..++..+.+|||||.. ... .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 34899999999999999999999876432 2234445566777889999999999987 432 2245678
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+.+|++++|+|++++.++... ..+ ..+ .++|+++|+||+|+.+.....++.+... ...+++++||++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence 899999999999988777553 222 222 3589999999999976544444433321 124599999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 030113 163 GDGLVDGLEWISQRVT 178 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~ 178 (183)
|.|+++++++|.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998765
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=151.95 Aligned_cols=159 Identities=20% Similarity=0.121 Sum_probs=108.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCCh-h--------hHhhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQE-R--------LRTSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~-~--------~~~~~~~~ 81 (183)
.+..+|+++|++|+|||||++++++......+. |.......+..++.++.+|||||+. . +......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999987643222 2222233455678899999999987 3 22333556
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
++.+|++++|+|+++. .....++...+.. .+.|+++++||+|+... ...+.+.+...........++++||+
T Consensus 86 l~~~D~vl~Vvd~~~~---~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 86 IGDVELVIFVVEGTRW---TPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp CCCEEEEEEEEETTCC---CHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HhcCCEEEEEEeCCCC---CHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEEEECC
Confidence 7888999999999762 2233344444332 46899999999998752 22222222111101112369999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
++.|++++++++.+.+.+.+
T Consensus 158 ~g~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp TTTTHHHHHHHHHTTCCBCC
T ss_pred CCCCHHHHHHHHHHhCCcCC
Confidence 99999999999998876543
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-25 Score=161.42 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=108.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCe-EEEEEEcCCChhhHhh-------HHhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNI-RFEAWDVGGQERLRTS-------WATY 81 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~~ 81 (183)
+...++|+|+|+.|+|||||++++.+..+.. ...|.......+.+... .+.+|||||+.++... +..+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 3467999999999999999999999887642 22344455566666554 9999999998765433 4567
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+..+|++++|+|+.... ....|+..+... +.|+++|+||+|+...... +..+.+. ...+++++++||+
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSAk 178 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSAL 178 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSSC
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEECC
Confidence 88999999999994332 233444444332 6899999999999766544 3333332 2234579999999
Q ss_pred cCCCHHHHHHHHHHhhhc
Q 030113 162 TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~ 179 (183)
+|.|++++++++.+.+.+
T Consensus 179 tg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CTTSTTTHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHhhhh
Confidence 999999999999998854
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=158.71 Aligned_cols=113 Identities=21% Similarity=0.234 Sum_probs=88.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc------------------CCcc-------cccCcccceeEEEEEcCeEEEEEEcCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL------------------GEVV-------TTHPTVGSNVEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~------------------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g 70 (183)
+..+|+|+|++|+|||||+++|+. .... ....+.......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 568999999999999999999961 1111 122355566677888899999999999
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+.++...+..+++.+|++++|+|++++.+..... .|..... .++|+++|+||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999876655543 3333332 36899999999999654
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=160.80 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=111.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC----cc------cccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE----VV------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYR 83 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (183)
..+.++|+++|++++|||||+++|.+.. .. ....|....+..+.+++..+.+|||||++++...+..++.
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence 3567999999999999999999998766 21 1224555555667778899999999999999999999999
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc--c-CCCceEEEEeec
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS--I-KNHDWHIQACSA 160 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~S~ 160 (183)
.+|++++|+|++++..- ....++..+.. .+.|+++++||+|+.+.....+..+.+.... . .....+++++||
T Consensus 96 ~aD~~ilVvda~~g~~~-qt~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKT-QTGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp SCCEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hCCEEEEEEecCCCccH-HHHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 99999999999874211 11222222211 3578899999999975322222222221110 0 112568999999
Q ss_pred ccCCCHHHHHHHHHHhhh
Q 030113 161 LTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~ 178 (183)
++|+|+++++++|.+.+.
T Consensus 171 ~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 171 KTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhc
Confidence 999999999999999764
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-24 Score=156.77 Aligned_cols=162 Identities=20% Similarity=0.121 Sum_probs=110.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcc----c--ccCcccceeEEEEEc-----------------------CeEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----T--THPTVGSNVEELVYK-----------------------NIRF 63 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~----~--~~~~~~~~~~~~~~~-----------------------~~~~ 63 (183)
.++..++|+++|+.++|||||+++|.+.... + ...|....+...... ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3467799999999999999999999854321 1 122554443332220 1689
Q ss_pred EEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH----HHH
Q 030113 64 EAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP----AEI 139 (183)
Q Consensus 64 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~----~~~ 139 (183)
.+|||||++++...+...+..+|++++|+|++++.+.......+...... ...|+++++||+|+.+.... +++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999999988888889999999999999653112222222221111 22579999999999754221 122
Q ss_pred HhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 140 TDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.+.+... ....++++++||++|.|+++++++|.+.+..
T Consensus 163 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 163 KEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2222211 1245789999999999999999999987753
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=161.77 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=104.3
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee----EEEEEcCeEEEEEEcCC--------ChhhH
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV----EELVYKNIRFEAWDVGG--------QERLR 75 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~g--------~~~~~ 75 (183)
...........+|+++|.+|||||||+|+|.+..+.....+.+++. ....+.+..+.+||||| ++.+.
T Consensus 14 ~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~ 93 (456)
T 4dcu_A 14 LVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIR 93 (456)
T ss_dssp ---------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHH
T ss_pred CCCChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHH
Confidence 3344455567899999999999999999999887654444445443 33334578999999999 77788
Q ss_pred hhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEE
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
..+..+++.+|++++|+|..++ +.....++...+.. .++|+++|+||+|+.+.. ....+.. .......
T Consensus 94 ~~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~-----~lg~~~~ 161 (456)
T 4dcu_A 94 QQAEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFY-----SLGFGEP 161 (456)
T ss_dssp HHHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSG-----GGSSSSE
T ss_pred HHHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHH-----HcCCCce
Confidence 8888999999999999998764 33344555565544 579999999999986431 1111111 1111135
Q ss_pred EEeecccCCCHHHHHHHHHHhhhcc
Q 030113 156 QACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++||++|.|++++++++.+.+...
T Consensus 162 ~~iSA~~g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 162 YPISGTHGLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp EECCTTTCTTHHHHHHHHHTTGGGS
T ss_pred EEeecccccchHHHHHHHHhhcccc
Confidence 7999999999999999999887643
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=151.31 Aligned_cols=132 Identities=16% Similarity=0.287 Sum_probs=97.7
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCC----------cccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD----------RARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+..+.+.+.+|||+|++.++..|..++++++++|+|+|+++ .+++.+...|+..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 4556666677788999999999999999999999999999999999999 778999999999998875556
Q ss_pred CCeEEEEEeCCCCCC------------------CCCHHHHHhhc-----CcCccC-CCceEEEEeecccCCCHHHHHHHH
Q 030113 118 HSVVLIFANKQDLKD------------------AMTPAEITDAL-----SLHSIK-NHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~------------------~~~~~~~~~~~-----~~~~~~-~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+.|+++++||.|+.. .....+..+.. ...... ...+.+++|||+++.||+++|+++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 799999999999852 12333333322 111111 345789999999999999999999
Q ss_pred HHhhhc
Q 030113 174 SQRVTG 179 (183)
Q Consensus 174 ~~~~~~ 179 (183)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=158.39 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=102.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhH--------Hhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW--------ATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~ 83 (183)
..++|+++|++|+|||||+|++.+..... ...|.......+..++..+.+|||||..+....+ ..+++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 45899999999999999999998865432 1223334445667788999999999986654333 23578
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
.+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+....... ... . .....+++++||++|
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~~~-~--~~~~~~~i~iSAktg 368 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----SLE-Y--PENITQIVHTAAAQK 368 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----TCC-C--CTTCCCEEEEBTTTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----HHH-H--hccCCcEEEEECCCC
Confidence 8999999999998766543 2333333 2 36999999999986542211 111 1 113457999999999
Q ss_pred CCHHHHHHHHHHhhhccC
Q 030113 164 DGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~~~ 181 (183)
.|++++++++.+.+....
T Consensus 369 ~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 369 QGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BSHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 999999999999886543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=156.96 Aligned_cols=159 Identities=18% Similarity=0.120 Sum_probs=107.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhHhh------------HH
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLRTS------------WA 79 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~ 79 (183)
..++|+++|++|+|||||++++++....... .|.......+.+.+..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999988653222 2223334556778889999999997543221 13
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEE
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.+++.+|++++|+|++++.+.... ++...+.. .++|+++|+||+|+.+... ..+..+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 456789999999999987665432 22222222 4689999999999865422 2333333322222334567999
Q ss_pred eecccCCCHHHHHHHHHHhhhc
Q 030113 158 CSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+||++|.|++++++.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=150.56 Aligned_cols=133 Identities=21% Similarity=0.286 Sum_probs=105.4
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC----------CcccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST----------DRARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (183)
+|.|+....+..+.+.+++|||+||++++..|..++++++++|+|+|++ +.+++.+...|+..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 4677777788888999999999999999999999999999999999998 678899999999999887666
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHHHHHhhcCc-----------CccCC-----------CceEEEE
Q 030113 117 QHSVVLIFANKQDLKDA-----------------MTPAEITDALSL-----------HSIKN-----------HDWHIQA 157 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~~-----------------~~~~~~~~~~~~-----------~~~~~-----------~~~~~~~ 157 (183)
.+.|+++++||.|+..+ ....+..+.+.. ..... ..+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998531 112222221111 11111 3578999
Q ss_pred eecccCCCHHHHHHHHHHhhhc
Q 030113 158 CSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
|||+++.||+.+|+.+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999887764
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=159.62 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=105.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc----------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|++++|||||+++|+..... ....|.......+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 456799999999999999999999543110 0123444555566777
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc---H---HHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR---I---SIMKDELFRLLGHEDLQHSV-VLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~ 132 (183)
+..+.+|||||++++...+..++..+|++++|+|++++.. | ......+..... .+.| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 8899999999999999999999999999999999998632 1 122223222222 2455 999999999854
Q ss_pred CCC----HHHHHh----hcCcCccC-CCceEEEEeecccCCCHHHHHH
Q 030113 133 AMT----PAEITD----ALSLHSIK-NHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 133 ~~~----~~~~~~----~~~~~~~~-~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
... ..+..+ .+...... ...++++++||++|.|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 211 112222 11111111 1257899999999999999654
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-23 Score=156.19 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=112.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cc---------c-------ccCcccceeEEEEEc-----CeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VV---------T-------THPTVGSNVEELVYK-----NIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~---------~-------~~~~~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (183)
.+..+|+++|+.++|||||+++|+... .. . ...|.......+.+. ...+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997521 10 0 111222222344443 378999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNH 151 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (183)
.++...+..+++.+|++++|+|++++.+......|..... .+.|+++|+||+|+.... ..+..+.+.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 9999999999999999999999999877766665554442 368999999999997543 333333332211 112
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
..+++++||++|.|++++++++++.+...
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 22489999999999999999999988653
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=153.15 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
+|+++|++++|||||+++|. ....|.+..+..+..++..+.+|||||++++...+...++.+|++++|+| ++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g- 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG- 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-
Confidence 99999999999999999998 44556666666677778899999999999998888888999999999999 543
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeE-EEEEe-CCCCCCCCCHH----HHHhhcCcCccCCCceEEEE--eeccc---CCCHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVV-LIFAN-KQDLKDAMTPA----EITDALSLHSIKNHDWHIQA--CSALT---GDGLV 167 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~v-ilv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~S~~~---~~gi~ 167 (183)
.+.....++..... .+.|. ++++| |+|+ +..... ++.+.+... ....+++++ +||++ ++|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 34444555544432 24666 88899 9999 432222 222222211 124578999 99999 99999
Q ss_pred HHHHHHHHhhh
Q 030113 168 DGLEWISQRVT 178 (183)
Q Consensus 168 ~~~~~i~~~~~ 178 (183)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999988765
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-25 Score=166.23 Aligned_cols=158 Identities=20% Similarity=0.144 Sum_probs=112.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++++|||||+++|.+..+... ..|..+....+.. .+..+.+|||||++.+...+..+++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 568899999999999999999987654321 1222233333333 456899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|++++...... ..+..... .+.|+++++||+|+.+... ..++.............++++++||++|.|+++
T Consensus 83 VDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999986554333 33333332 3589999999999864321 122222111111112457899999999999999
Q ss_pred HHHHHHHhhh
Q 030113 169 GLEWISQRVT 178 (183)
Q Consensus 169 ~~~~i~~~~~ 178 (183)
+++++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999998765
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=157.01 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=107.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC--cc---------c-------ccCcccceeEEEEEc-----CeEEEEEEcCCCh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE--VV---------T-------THPTVGSNVEELVYK-----NIRFEAWDVGGQE 72 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~--~~---------~-------~~~~~~~~~~~~~~~-----~~~~~~~D~~g~~ 72 (183)
+..+|+|+|+.++|||||+++|+... .. . ...|.......+.+. ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999997521 10 0 011222223344443 3789999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCc
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHD 152 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (183)
++...+..+++.+|++++|+|++++.+......|..... .+.|+++|+||+|+.... ..+..+.+.... ....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l-g~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV-GIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT-CCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc-HHHHHHHHHHHh-CCCc
Confidence 999999999999999999999998877666655554442 358999999999997643 333222222111 1112
Q ss_pred eEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 153 WHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 153 ~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.+++++||++|.|++++++++.+.+..
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 248999999999999999999998865
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-23 Score=143.78 Aligned_cols=162 Identities=13% Similarity=0.158 Sum_probs=106.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc-cc-cc---CcccceeEEEEEcCeEEEEEEcCCChhh-----------Hhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV-VT-TH---PTVGSNVEELVYKNIRFEAWDVGGQERL-----------RTS 77 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~-~~-~~---~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~ 77 (183)
..+.++|+|+|++|+|||||++++++... .. .. .|.........+.+.++.+|||||+.++ ...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999998763 22 11 3444555566778899999999997553 223
Q ss_pred HHhhccCCCEEEEEEeCCCcccHH-HHHHHHHHHhCCCCCCCCeEEEEEe-CCCCCCCCCHHH------------HHhhc
Q 030113 78 WATYYRGTHAVIVVIDSTDRARIS-IMKDELFRLLGHEDLQHSVVLIFAN-KQDLKDAMTPAE------------ITDAL 143 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~vilv~n-K~Dl~~~~~~~~------------~~~~~ 143 (183)
...+++.+|++++|+|+++..... .+..++....... ...|+++++| |+|+... .... +...+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 344678999999999998633322 2334444443321 1356666666 9999743 2222 11122
Q ss_pred CcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 144 SLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.... ..+..+++||+++.|++++|+++.+.+....
T Consensus 176 ~~~~---~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 176 GGRI---CAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTCE---EECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeE---EEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 1110 0011178999999999999999999887643
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-24 Score=159.27 Aligned_cols=152 Identities=14% Similarity=0.196 Sum_probs=101.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC--Ccc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG--EVV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~--~~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.++.++|+++|++++|||||+++|+.. .+. ....|.......+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 356799999999999999999999764 221 1123444445556677
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHH-------HHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIM-------KDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-------~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...+.+|||||++++...+..++..+|++++|+|+++ .+|+.. ...+...... .-.|+++++||+|+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCC
Confidence 8899999999999999999999999999999999998 556532 2222222111 1246899999999976
Q ss_pred CC-CH-------HHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 133 AM-TP-------AEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 133 ~~-~~-------~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
.. .. .++.+.+.........++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 31 11 122222222211122478999999999999754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-23 Score=149.48 Aligned_cols=162 Identities=22% Similarity=0.171 Sum_probs=106.1
Q ss_pred ceE-EEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcCeEEEEEEcCCC---------hhhHhhHHhhcc
Q 030113 17 DYK-IIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKNIRFEAWDVGGQ---------ERLRTSWATYYR 83 (183)
Q Consensus 17 ~~~-i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~ 83 (183)
.++ |+++|++|+|||||++++.+.... ...+|.+.....+.+.+..+.+|||+|. +.+...+ ..+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 344 999999999999999999987652 2345555666778888889999999996 2233333 3578
Q ss_pred CCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh--cCcCccCCCceEEEEee
Q 030113 84 GTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA--LSLHSIKNHDWHIQACS 159 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S 159 (183)
.+|++++|+|++++. .......+ ...+......+.|+++|.||+|+............ +... ......+++++|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~S 334 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE-LYSPIFDVIPIS 334 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHH-HCSCEEEEEECB
T ss_pred hCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHH-hcCCCCcEEEEE
Confidence 899999999999875 33333222 22222222346899999999998654311111111 0000 001244689999
Q ss_pred cccCCCHHHHHHHHHHhhhccC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
|+++.|+++++++|.+.+....
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHhcccC
Confidence 9999999999999998776543
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=157.90 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=102.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--c--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--V--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|++++|||||+++|++... . ....+.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 45679999999999999999999965411 0 0123444555667778
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHH------HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISI------MKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
...+.+|||||++++...+..++..+|++++|+|++++.++.. ....+...... ...|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcEEEEEECcCcccc
Confidence 8999999999999999999999999999999999998643321 22222221111 22569999999999753
Q ss_pred CC--HHHHHhhc----CcCccCCCceEEEEeecccCCCHHH
Q 030113 134 MT--PAEITDAL----SLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 134 ~~--~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
.. ..+..+.+ .........++++++||++|.|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 21 12222222 1111122367899999999999874
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=161.35 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=108.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEE----------------EcCeEEEEEEcCCChh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELV----------------YKNIRFEAWDVGGQER 73 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 73 (183)
.+.++|+++|++++|||||++++.+..+... .++.+..+.... +....+.+|||||+++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3568999999999999999999987544322 223333332211 1122699999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--------------
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTD---RARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-------------- 136 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-------------- 136 (183)
|...+..+++.+|++++|+|+++ ++++..+. .+.. .+.|+++++||+|+......
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99988888999999999999998 44444332 1211 46899999999998642110
Q ss_pred H-----------HHHhhcCcCcc----------CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 137 A-----------EITDALSLHSI----------KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
. ++.+.+..... ....++++++||++|.|++++++++...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 11111211110 134568999999999999999999998765
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=154.10 Aligned_cols=153 Identities=17% Similarity=0.123 Sum_probs=103.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCc---cc---------------------------------ccCcccceeEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEV---VT---------------------------------THPTVGSNVEEL 56 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~---~~---------------------------------~~~~~~~~~~~~ 56 (183)
..+..++|+++|++++|||||+++|++... .. ...|....+..+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 345669999999999999999999975431 00 012233334455
Q ss_pred EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-
Q 030113 57 VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT- 135 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~- 135 (183)
......+.+|||||++++...+..++..+|++++|+|++++... ....++...... ...|+++|+||+|+.+...
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHH
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHH
Confidence 56788999999999999999999999999999999999986432 233333322221 1246999999999975321
Q ss_pred -HHHHHhhcC----cCccCCCceEEEEeecccCCCHHHH
Q 030113 136 -PAEITDALS----LHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 136 -~~~~~~~~~----~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
..+..+... ........++++++||++|.|++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 111222111 1110123578999999999999874
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=152.15 Aligned_cols=159 Identities=17% Similarity=0.113 Sum_probs=110.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC-------cc------------cccCcccceeEEEEEcCeEEEEEEcCCChhhHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE-------VV------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
+.++|+++|++++|||||+++|.+.. +. ....|.+.....+......+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999997631 11 111233333344555678999999999999998
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-----HHHHhhcCcCccCC
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-----AEITDALSLHSIKN 150 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~ 150 (183)
.+..++..+|++++|+|+++..... ...++..+.. .++| +++++||+|+.+.... .++.+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999864332 2333333222 3577 7899999999742111 12222222222122
Q ss_pred CceEEEEeecccCCC----------HHHHHHHHHHhhhc
Q 030113 151 HDWHIQACSALTGDG----------LVDGLEWISQRVTG 179 (183)
Q Consensus 151 ~~~~~~~~S~~~~~g----------i~~~~~~i~~~~~~ 179 (183)
..++++++||++|.| ++++++.+.+.+..
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 346899999999764 89999999887753
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=150.45 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=112.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC--------Cccc------------ccCcccceeEEEEEcCeEEEEEEcCCChh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG--------EVVT------------THPTVGSNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~--------~~~~------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
.+..++|+++|++++|||||+++|.+. .+.. ...|.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 457799999999999999999999863 1111 12233444445556778999999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCC-HH----HHHhhcCcCc
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMT-PA----EITDALSLHS 147 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~-~~----~~~~~~~~~~ 147 (183)
+...+..++..+|++++|+|++++... ....++..+.. .+.| +++++||+|+.+... .+ ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999886533 33444444332 2577 899999999974211 11 1222222221
Q ss_pred cCCCceEEEEeecccCCC------------------HHHHHHHHHHhhh
Q 030113 148 IKNHDWHIQACSALTGDG------------------LVDGLEWISQRVT 178 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~g------------------i~~~~~~i~~~~~ 178 (183)
......+++++||++|.| ++++++.+.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 112346899999999987 8888888888765
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-24 Score=142.55 Aligned_cols=129 Identities=28% Similarity=0.327 Sum_probs=94.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccC----CCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRG----THAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~ii 89 (183)
..+.++|+++|++|+|||||++++.+..+.....+..... ...+....+.+|||||+..+...+..++.. +|+++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 123 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 123 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence 3567999999999999999999999887543211111111 012256789999999999887777777765 89999
Q ss_pred EEEeCC-CcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCCCCCHHHHHhhc
Q 030113 90 VVIDST-DRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKDAMTPAEITDAL 143 (183)
Q Consensus 90 ~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~~~~~~~~~~~~ 143 (183)
+|+|++ +..++.....|+..+.... ...+.|+++|+||+|+.+.....++.+.+
T Consensus 124 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 999999 8888988888888776432 12469999999999998776665555544
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=161.32 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=105.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc----------------------------------ccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----------------------------------THPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|++++|||||+++|++..... ...|.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3567999999999999999999998653211 123445555667778
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc---cH---HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RI---SIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
..++.+|||||++++...+..++..+|++|+|+|++++. ++ ......+...... ...|+++|+||+|+.+.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l---gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT---TCCEEEEEEECTTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc---CCCeEEEEEecccccch
Confidence 899999999999999999999999999999999998742 00 1122222222221 22569999999999753
Q ss_pred CC--HHHHH----hhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 134 MT--PAEIT----DALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 134 ~~--~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
.. ..+.. ..+.........++++++||++|.|+.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 21 11112 22211111223578999999999999865
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-23 Score=149.59 Aligned_cols=121 Identities=17% Similarity=0.288 Sum_probs=92.2
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC----------CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST----------DRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
+.+.+.+|||+|+++++..|..++++++++|+|||++ +.+++.+...|+..+.......+.|+++|+||.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 778999999999999876555679999999999
Q ss_pred CCCCC----CC-------------------HHHHHhhcCcCc------c-----CCCceEEEEeecccCCCHHHHHHHHH
Q 030113 129 DLKDA----MT-------------------PAEITDALSLHS------I-----KNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 129 Dl~~~----~~-------------------~~~~~~~~~~~~------~-----~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
|+..+ .. ..+..+...... . ....+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97421 00 111111111100 0 02345679999999999999999999
Q ss_pred Hhhhc
Q 030113 175 QRVTG 179 (183)
Q Consensus 175 ~~~~~ 179 (183)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-23 Score=144.07 Aligned_cols=159 Identities=14% Similarity=0.227 Sum_probs=89.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc--c-------cCcccceeEEEEE--c--CeEEEEEEcCCCh-------h
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT--T-------HPTVGSNVEELVY--K--NIRFEAWDVGGQE-------R 73 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~--~-------~~~~~~~~~~~~~--~--~~~~~~~D~~g~~-------~ 73 (183)
+...++|+++|.+|+|||||+|++++..... . .++.+........ + ...+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 3567999999999999999999987765322 1 4555555554444 2 2589999999962 2
Q ss_pred hHhhH-------Hhhcc-------------CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 74 LRTSW-------ATYYR-------------GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 74 ~~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+.... ..++. .+|+++++++.+... +......+...+.. ++|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 22222 33333 368999999877532 22222333333332 6899999999998644
Q ss_pred CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.......+.+... ....+++++++|+++++|++++++++.+.++
T Consensus 160 ~e~~~~~~~i~~~-l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 EECQQFKKQIMKE-IQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHH-HHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHH-HHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3332222222111 1224556999999999999999999988654
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-23 Score=153.16 Aligned_cols=152 Identities=14% Similarity=0.141 Sum_probs=104.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC--Ccc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG--EVV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~--~~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|++++|||||+++|++. .+. ....|....+..+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 356799999999999999999999753 111 1224555556667778
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc---cHH---HHHHHHHHHhCCCCCCCC-eEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RIS---IMKDELFRLLGHEDLQHS-VVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-~vilv~nK~Dl~~ 132 (183)
...+.+|||||++++...+..++..+|++++|+|++++. +|+ ....++..... .+. ++++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 899999999999999999999999999999999998752 111 22233322221 235 4999999999973
Q ss_pred CCC--HHHHHhhc----CcCccCCCceEEEEeecccCCCHHHH
Q 030113 133 AMT--PAEITDAL----SLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 133 ~~~--~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
... ..+..+.+ .........++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 211 11122211 11111112468999999999998743
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-24 Score=158.72 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=107.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+.++|+++|++++|||||++++.+..+... ..|.......+.+++..+.+|||||++.|...+..++..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999976543221 1222222233444667899999999999999988889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc--cC--CCceEEEEeecccCCCHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS--IK--NHDWHIQACSALTGDGLV 167 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~S~~~~~gi~ 167 (183)
+|++++.... ....+..... .+.|+++++||+|+..... ..+.+.+.... .. ...++++++||++|.|++
T Consensus 82 Vda~~g~~~q-T~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQ-TIEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTT-THHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHH-HHHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 9998742211 1122222211 3689999999999864321 11222221110 01 124789999999999999
Q ss_pred HHHHHHHHh
Q 030113 168 DGLEWISQR 176 (183)
Q Consensus 168 ~~~~~i~~~ 176 (183)
++++++...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=136.75 Aligned_cols=161 Identities=16% Similarity=0.180 Sum_probs=100.7
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEEcCeEEEEEEcCCC-----------hhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVYKNIRFEAWDVGGQ-----------ERLR 75 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~ 75 (183)
......++|+++|++|+|||||++++++..+... ..+..+....+.+.+..+.+|||||. ..+.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 3445779999999999999999999998776432 23444555667778899999999993 3455
Q ss_pred hhHHhhccCCCEEEEEEeCCCcccHH-HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH--------HHHhhcCcC
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRARIS-IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA--------EITDALSLH 146 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~--------~~~~~~~~~ 146 (183)
..+..+++.+|++++|+|+++..... ....++....... ...|+++|+||+|+....... .+.+....
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~- 180 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI- 180 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH-
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH-
Confidence 55566677899999999997654421 1222222222110 236899999999986543222 12222111
Q ss_pred ccCCCceEEEEeecc-----cCCCHHHHHHHHHHhhhc
Q 030113 147 SIKNHDWHIQACSAL-----TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~-----~~~gi~~~~~~i~~~~~~ 179 (183)
.+.+++.++.. +..++.++++.+.+.+.+
T Consensus 181 ----~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 ----FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ----HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 11235555444 347899999998887754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=142.79 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=101.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-------cCcc-----------------c---ce---------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-------HPTV-----------------G---SN--------------- 52 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-------~~~~-----------------~---~~--------------- 52 (183)
...++|+|+|.+|+|||||++++++..+.+. .++. + .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999998876311 1110 0 00
Q ss_pred ------------eEEEEE-cCeEEEEEEcCCCh-------------hhHhhHHhhccCCCEEE-EEEeCCCcccHHHHHH
Q 030113 53 ------------VEELVY-KNIRFEAWDVGGQE-------------RLRTSWATYYRGTHAVI-VVIDSTDRARISIMKD 105 (183)
Q Consensus 53 ------------~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 105 (183)
...+.. ...++.+|||||.. .+...+..+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000111 13789999999953 45567778888888776 6999987644333323
Q ss_pred HHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 106 ELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 106 ~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
++..+ .. .+.|+++|+||+|+.+... ..+..+.. .........+++++||+++.|++++++++.+.
T Consensus 184 ~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 33333 22 4689999999999875432 12211110 01111123579999999999999999998764
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=147.05 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=83.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cc-----------------------cccCcccceeEEEEEcCeEEEEEEcC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VV-----------------------TTHPTVGSNVEELVYKNIRFEAWDVG 69 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~D~~ 69 (183)
.+..+|+|+|++++|||||+++|+... .. ....+.......+.+++..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998531 10 01122333445677788999999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
|+.++...+..++..+|++++|+|++++... .....+... .. .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~~---~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-RL---RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-TT---TTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-HH---cCCCEEEEEcCcCCccc
Confidence 9999988888999999999999999876432 222233322 22 46899999999998754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=130.26 Aligned_cols=162 Identities=16% Similarity=0.150 Sum_probs=98.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCc-ccccCccccee--EEEEEcCeEEEEEEcCCChh----------hHhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNV--EELVYKNIRFEAWDVGGQER----------LRTSW 78 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~D~~g~~~----------~~~~~ 78 (183)
+...+..+|+++|++|+|||||++++++..+ ....++.|... ..+...+ .+.+|||||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 4456778999999999999999999998763 23344444332 2233333 688999999732 33333
Q ss_pred Hhhc---cCCCEEEEEEeCCCcccHHH--HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhcCcCccCCCc
Q 030113 79 ATYY---RGTHAVIVVIDSTDRARISI--MKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-ITDALSLHSIKNHD 152 (183)
Q Consensus 79 ~~~~---~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 152 (183)
..++ ..++++++|+|++++.+... +..++.. .+.|++++.||+|+......+. +.............
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 3444 46799999999998765432 2222221 3588999999999764322111 11111111101134
Q ss_pred eEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 153 WHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 153 ~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
..++++|++++.|++++++++.+.+.+.+
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 67899999999999999999998876543
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-23 Score=156.36 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=91.9
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccC--Ccc--------------------------------cccCcccceeEEE
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLG--EVV--------------------------------TTHPTVGSNVEEL 56 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~--~~~--------------------------------~~~~~~~~~~~~~ 56 (183)
....+..++|+++|++++|||||+++|+.. .+. ....|++..+..+
T Consensus 37 ~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~ 116 (467)
T 1r5b_A 37 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 116 (467)
T ss_dssp HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred hhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence 344577899999999999999999998641 110 1123444445556
Q ss_pred EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc---cHH---HHHHHHHHHhCCCCCCCCe-EEEEEeCCC
Q 030113 57 VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RIS---IMKDELFRLLGHEDLQHSV-VLIFANKQD 129 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-vilv~nK~D 129 (183)
..++..+.+|||||+++|...+..++..+|++|+|+|++++. +|. .....+..... .++| +++++||+|
T Consensus 117 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~D 192 (467)
T 1r5b_A 117 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMD 192 (467)
T ss_dssp ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTT
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECcc
Confidence 667889999999999999999999999999999999999862 221 12222222211 3466 999999999
Q ss_pred CCCCC-CH---H----HHHhhcCcC-ccC-CCceEEEEeecccCCCHHHHH
Q 030113 130 LKDAM-TP---A----EITDALSLH-SIK-NHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 130 l~~~~-~~---~----~~~~~~~~~-~~~-~~~~~~~~~S~~~~~gi~~~~ 170 (183)
+.... .. . ++.+.+... ... ...++++++||++|.|+.+++
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 96421 11 1 122222111 111 126789999999999998754
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=155.29 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=109.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC-------cc------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE-------VV------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.+..++|+++|++++|||||+++|.+.. +. ....|.......+......+.+|||||++++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567999999999999999999997631 00 0111222233345556789999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-----HHHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-----AEITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-----~~~~~~~~~~~~ 148 (183)
...+..++..+|++|+|+|++++... ....++..+.. .++| +++++||+|+.+.... .++.+.+.....
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 99999999999999999999986432 23333333321 2467 7899999999752111 122222222221
Q ss_pred CCCceEEEEeecccC--------CCHHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSALTG--------DGLVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~--------~gi~~~~~~i~~~~~ 178 (183)
....++++++||++| .|++++++++.+.+.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 223578999999999 579999999988765
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-24 Score=164.33 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=90.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcc----------------------------------cccCcccceeEEEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------------------------------TTHPTVGSNVEELVY 58 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~ 58 (183)
..+..++|+++|++++|||||+++|++.... ....|.......+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 3456789999999999999999999532100 112233344445555
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc---cH---HHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCC
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RI---SIMKDELFRLLGHEDLQHSV-VLIFANKQDLK 131 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~ 131 (183)
.+..+.+|||||++++...+..++..+|++|+|+|++++. .+ ......+..... .++| +++|+||+|+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccc
Confidence 6789999999999999888888899999999999998642 11 111122222211 2354 89999999986
Q ss_pred CCCC--HH----HHHhhc-CcCccCCCceEEEEeecccCCCHH--------------HHHHHHHHhhh
Q 030113 132 DAMT--PA----EITDAL-SLHSIKNHDWHIQACSALTGDGLV--------------DGLEWISQRVT 178 (183)
Q Consensus 132 ~~~~--~~----~~~~~~-~~~~~~~~~~~~~~~S~~~~~gi~--------------~~~~~i~~~~~ 178 (183)
+... .. ++...+ .........++++++||++|.|+. ++++.|.+.+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 5221 11 222222 222222246789999999999998 68888776554
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=147.66 Aligned_cols=114 Identities=23% Similarity=0.154 Sum_probs=87.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC--Cc------------c-------cccCcccceeEEEEEcCeEEEEEEcCCChh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG--EV------------V-------TTHPTVGSNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~--~~------------~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
.+..+|+|+|++|+|||||+++++.. .+ . ....|.......+.+.+..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 56799999999999999999999731 11 0 123455566667777899999999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+...+..+++.+|++++|+|+++..+......|.. ... .+.|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 99999999999999999999998877665544433 322 36899999999998754
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-20 Score=143.14 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=85.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+..+|+|+|+.|+|||||++++++.... ....+.......+......+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 356789999999999999999999843211 01123334455566788999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
++...+..+++.+|++++|+|+++.-... ...++..... .+.|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 99999999999999999999998764432 2234444332 368999999999987
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-22 Score=146.03 Aligned_cols=162 Identities=15% Similarity=0.260 Sum_probs=84.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-cc---------cCcccceeEEEEE--cC--eEEEEEEcCCC-------h
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TT---------HPTVGSNVEELVY--KN--IRFEAWDVGGQ-------E 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~---------~~~~~~~~~~~~~--~~--~~~~~~D~~g~-------~ 72 (183)
....++|+|+|++|+|||||++++.+.... .. .++.+.....+.. .+ ..+.+|||||+ +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 356699999999999999999998665322 11 1333333322222 22 47899999998 5
Q ss_pred hhHhhHH-------hhccCC-------------CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWA-------TYYRGT-------------HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.+...+. .+++.+ |+++|+++.+ ..++......+...+. .++|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence 5544443 444332 3566666542 2345445444444432 4689999999999865
Q ss_pred CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
........+... ......+++++++||+++.| ++.|.++.+.+.+..|
T Consensus 189 ~~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 189 LKERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 422222111221 12233467899999999998 8888888887766544
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=133.63 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=99.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc-----Ccc---ccee---------------------------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-----PTV---GSNV--------------------------------- 53 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~-----~~~---~~~~--------------------------------- 53 (183)
...++|+|+|++|+|||||+|++++..+.... ... ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999988752111 000 0000
Q ss_pred -------------------EE---EEEcCeEEEEEEcCCChh-------------hHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 54 -------------------EE---LVYKNIRFEAWDVGGQER-------------LRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 54 -------------------~~---~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
.. ......++.+|||||..+ +......++..+|++++|+|+++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 111346899999999653 4566778889999999999974322
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC--CCceEEEEeeccc---CCCHHHHHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK--NHDWHIQACSALT---GDGLVDGLEWI 173 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~S~~~---~~gi~~~~~~i 173 (183)
........+...+.. .+.|+++|+||+|+.+.... ..+.+...... ....++..+|+.+ +.|+.++++.+
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 110111122222222 46899999999998654331 11111111111 2334555666777 89999999999
Q ss_pred HHhhhccC
Q 030113 174 SQRVTGKA 181 (183)
Q Consensus 174 ~~~~~~~~ 181 (183)
.+.+...+
T Consensus 257 ~~~~~~~~ 264 (315)
T 1jwy_B 257 ILYFKNHP 264 (315)
T ss_dssp HHHHHTCT
T ss_pred HHHHhCCC
Confidence 88876543
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-20 Score=143.18 Aligned_cols=116 Identities=20% Similarity=0.152 Sum_probs=87.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhcc--CCcc-------------------cccCcccceeEEEEEcCeEEEEEEcCCC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHL--GEVV-------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 71 (183)
...+..+|+|+|++|+|||||+++|+. +.+. ....|.......+.+.+..+.+|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 346779999999999999999999984 1110 1123444555667778899999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
.++...+..+++.+|++++|+|++++.+......| ..+.. .+.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence 99999999999999999999999987766554433 33322 36899999999998754
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=140.43 Aligned_cols=115 Identities=17% Similarity=0.077 Sum_probs=85.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC--cc-------------------cccCcccceeEEEEEcC-------eEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE--VV-------------------TTHPTVGSNVEELVYKN-------IRFEA 65 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~--~~-------------------~~~~~~~~~~~~~~~~~-------~~~~~ 65 (183)
..+..+|+|+|+.++|||||+++|+... +. ....|+......+.+.+ ..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4567899999999999999999996421 11 01123333344555555 89999
Q ss_pred EEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 66 WDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
|||||+.+|...+..+++.+|++|+|+|+++....... ..|..... .+.|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 99999999999999999999999999999987554333 23333322 36899999999998653
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=145.68 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=105.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccc--------------ee---------------------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS--------------NV--------------------------- 53 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~--------------~~--------------------------- 53 (183)
...++|+|+|++|+|||||+|+|++..........++ +.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4679999999999999999999998775432211111 00
Q ss_pred ----------------EEEEEcC----eEEEEEEcCCChh---hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHH
Q 030113 54 ----------------EELVYKN----IRFEAWDVGGQER---LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL 110 (183)
Q Consensus 54 ----------------~~~~~~~----~~~~~~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (183)
..+.+.. ..+.+|||||... ....+..+++++|++++|+|++++.+......+. ..
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-NY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-HH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-HH
Confidence 0000100 4689999999654 3456677889999999999999887766554333 23
Q ss_pred hCCCCCCCCeEEEEEeCCCCCCCC-----CHHH-------HHh----hcCcCcc----CCCceEEEEeecc---------
Q 030113 111 LGHEDLQHSVVLIFANKQDLKDAM-----TPAE-------ITD----ALSLHSI----KNHDWHIQACSAL--------- 161 (183)
Q Consensus 111 ~~~~~~~~~~vilv~nK~Dl~~~~-----~~~~-------~~~----~~~~~~~----~~~~~~~~~~S~~--------- 161 (183)
+.. .+.|+++|+||+|+.... ...+ +.+ .+..... .....+++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 222 357899999999985431 1001 111 1111100 0123469999999
Q ss_pred -----cCCCHHHHHHHHHHhhhc
Q 030113 162 -----TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 162 -----~~~gi~~~~~~i~~~~~~ 179 (183)
++.|++++++++.+.+.+
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887654
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=137.75 Aligned_cols=133 Identities=20% Similarity=0.233 Sum_probs=104.8
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCC----------cccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD----------RARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (183)
+|+|+....+..+++.+++|||+|+++++..|..++++++++|+|||+++ .++|.+...|+..+......
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 46777777788889999999999999999999999999999999999999 88999999999999887656
Q ss_pred CCCeEEEEEeCCCCCCCCC--------------------------------HHHHHhhc----CcCc----cCCCceEEE
Q 030113 117 QHSVVLIFANKQDLKDAMT--------------------------------PAEITDAL----SLHS----IKNHDWHIQ 156 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~~~~--------------------------------~~~~~~~~----~~~~----~~~~~~~~~ 156 (183)
.+.|++||+||.|+..... ..+..... .... .....+.++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 7899999999999732100 01111110 0000 012356788
Q ss_pred EeecccCCCHHHHHHHHHHhhhc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+|||+++.||+++|+++.+.+..
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHHHH
Confidence 99999999999999999887764
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-20 Score=128.41 Aligned_cols=117 Identities=10% Similarity=0.072 Sum_probs=79.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhcc-------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYR------- 83 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------- 83 (183)
.+.++|+++|++|+|||||++++++....... .+.......+...+..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 47899999999999999999999988753322 2444555566778899999999998766443333222
Q ss_pred --CCCEEEEEEeCCCcccHHHHH-HHHHHHhCCCC-CCCCeEEEEEeCCCCCC
Q 030113 84 --GTHAVIVVIDSTDRARISIMK-DELFRLLGHED-LQHSVVLIFANKQDLKD 132 (183)
Q Consensus 84 --~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~~vilv~nK~Dl~~ 132 (183)
.+|++++|++++... +.... .++..+..... ....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 679999999987643 33222 23333222111 11258999999999853
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=130.65 Aligned_cols=159 Identities=22% Similarity=0.242 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--c-ccCcccceeEEEEEcC-eEEEEEEcCCChhh-------HhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--T-THPTVGSNVEELVYKN-IRFEAWDVGGQERL-------RTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (183)
-.|+++|++|+|||||++++++.... . ...+...+...+...+ ..+.+||+||.... ........+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 35789999999999999999886421 1 1123334444455554 78999999996321 112223456799
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
.+++++|++ ..++..+..+..+...... ....|.++++||+|+.......++.+.+. ..+.+++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCccC
Confidence 999999998 5556666655555443210 12478999999999865411122222221 2245699999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030113 166 LVDGLEWISQRVTGKAP 182 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (183)
++++++++.+.+.+.++
T Consensus 312 i~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 312 LPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999876553
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-18 Score=130.42 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=85.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC------------------cc-------cccCcccceeEEEEEcCeEEEEEEcCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE------------------VV-------TTHPTVGSNVEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~------------------~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g 70 (183)
+..+|+|+|+.++|||||..+|+... .. +...|+......+.+++..+.++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 56899999999999999999985210 11 122455566677889999999999999
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+.+|.......++-+|++++|+|+.++-.-... ..|..... .++|.++++||+|....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999877433332 33344333 46999999999998643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=131.73 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=94.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc-------Cc----------------------------------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-------PT---------------------------------------- 48 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~-------~~---------------------------------------- 48 (183)
..++|+|+|.+|+|||||+++|++..+.+.. ++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999998763111 11
Q ss_pred ---cccee----EEEEE-cCeEEEEEEcCCCh-------------hhHhhHHhhccCCCEEEE-EEeCCCcccHHHHHHH
Q 030113 49 ---VGSNV----EELVY-KNIRFEAWDVGGQE-------------RLRTSWATYYRGTHAVIV-VIDSTDRARISIMKDE 106 (183)
Q Consensus 49 ---~~~~~----~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~~~ 106 (183)
.++.. ..+.. ...++.+|||||.. .+...+..++..++.+++ |.|++....-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 00000 01111 24689999999952 345566777776665554 6666543221112122
Q ss_pred HHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 107 LFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 107 ~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
+..+ . ..+.|+++|+||+|+.+... ..+..+.. .........+++++||+++.|++++++++.+
T Consensus 190 ~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh-C---cCCCceEEEeccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3232 2 24689999999999875432 12221111 1111122357899999999999999998876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-19 Score=130.63 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccccc-Cccc---------------------------------------------
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG--------------------------------------------- 50 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~-~~~~--------------------------------------------- 50 (183)
-.+|+|+|++|+|||||++++.+..+.+.. .+..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 359999999999999999999997752211 1000
Q ss_pred -------c--eeEEEE---EcCeEEEEEEcCCChhh-------------HhhHHhhccCCCEEEEEEeCCCcccHHHHHH
Q 030113 51 -------S--NVEELV---YKNIRFEAWDVGGQERL-------------RTSWATYYRGTHAVIVVIDSTDRARISIMKD 105 (183)
Q Consensus 51 -------~--~~~~~~---~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 105 (183)
+ ....+. .....+.+|||||..++ ......+++++|++++|+|..+.........
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~ 193 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH
Confidence 0 000111 12457899999997665 6677888999999999998765432221111
Q ss_pred HHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 106 ELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 106 ~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
.+... ....+.|+++|+||+|+.+... ..+..+.. ....+.+++++|+..+.++++.+..
T Consensus 194 ~l~~~---~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 194 KISRE---VDPSGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHH---SCTTCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHH---hcccCCCEEEEEeCCccCCCcccHHHHHcCc----cccccCCeEEEEECChHHhccCCCH
Confidence 12222 2234689999999999875432 11211111 1234457899999988887765443
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-19 Score=123.21 Aligned_cols=118 Identities=10% Similarity=0.069 Sum_probs=78.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChhhHh-------hHHhh--
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQERLRT-------SWATY-- 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~-- 81 (183)
.+.++|+++|++|+|||||++++++..+..... +...........+..+.+|||||..++.. .+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 467999999999999999999999887543222 22233344566788999999999865432 22222
Q ss_pred ccCCCEEEEEEeCCCcccHHHHH-HHHHHHhCCCC-CCCCeEEEEEeCCCCCCC
Q 030113 82 YRGTHAVIVVIDSTDRARISIMK-DELFRLLGHED-LQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~ 133 (183)
...+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2468999999998653 333322 33333322111 112699999999998643
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-20 Score=137.10 Aligned_cols=80 Identities=29% Similarity=0.247 Sum_probs=47.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc-ccc--CcccceeEEEE---------------------Ec---CeEEEEEEcCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTH--PTVGSNVEELV---------------------YK---NIRFEAWDVGG 70 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~-~~~--~~~~~~~~~~~---------------------~~---~~~~~~~D~~g 70 (183)
++|+++|.+|+|||||+|++.+.... ... .|...+..... +. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987621 111 22222222111 11 36799999999
Q ss_pred Chhh----HhhH---HhhccCCCEEEEEEeCCCc
Q 030113 71 QERL----RTSW---ATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 71 ~~~~----~~~~---~~~~~~~d~ii~v~d~~~~ 97 (183)
..+. .... ..+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7531 2222 2456899999999999875
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-19 Score=130.50 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=95.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC------Ccc--ccc---Cc------------------ccceeE----------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG------EVV--TTH---PT------------------VGSNVE---------- 54 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~------~~~--~~~---~~------------------~~~~~~---------- 54 (183)
..+..+|+++|++|+|||||++++... ... ... +. .+....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 356789999999999999999998532 100 000 00 000000
Q ss_pred ----------EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q 030113 55 ----------ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124 (183)
Q Consensus 55 ----------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv 124 (183)
.+...+..+.+|||||.... .......+|++++|+|+.....+..+. ......|+++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence 00124578999999995432 223458899999999987654331111 11134689999
Q ss_pred EeCCCCCCCCCHHHHHhhcCc----Cc--cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 125 ANKQDLKDAMTPAEITDALSL----HS--IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 125 ~nK~Dl~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+||+|+.+..........+.. .. ......+++++||++|+|++++++++.+.+..
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999998643222221122211 10 00124579999999999999999999988754
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=112.68 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=116.8
Q ss_pred hHHHhhhcCCCcceEEEEEcCC-CCCHHHHHHHhccCCc-cc----c-c--Ccc--cceeE-----EEEE----------
Q 030113 5 VSKFWFMLFPGKDYKIIIVGLD-NAGKTTTLYKLHLGEV-VT----T-H--PTV--GSNVE-----ELVY---------- 58 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~-~~GKStl~~~l~~~~~-~~----~-~--~~~--~~~~~-----~~~~---------- 58 (183)
+.+|++++.++..+++++.||. ..=+.+|+.++...+. .+ . . .-+ |+.+. .++.
T Consensus 4 ~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~e 83 (227)
T 3l82_B 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKE 83 (227)
T ss_dssp CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----
T ss_pred HHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHH
Confidence 3578899999999999999964 2345578887765541 11 0 0 011 11110 1111
Q ss_pred -c-----C----eEEEEE------EcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHH---HHHhCCCC-CCC
Q 030113 59 -K-----N----IRFEAW------DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL---FRLLGHED-LQH 118 (183)
Q Consensus 59 -~-----~----~~~~~~------D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~ 118 (183)
+ + -++-.. +.+||.+++..|..|++++|++|||+|.+|.+.++ ....+ ..++.... ..+
T Consensus 84 r~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~g 162 (227)
T 3l82_B 84 RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG 162 (227)
T ss_dssp ---------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSC
T ss_pred hhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCC
Confidence 0 0 122222 33489999999999999999999999999887654 55555 44554432 367
Q ss_pred CeEEEEEeCC-CCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 119 SVVLIFANKQ-DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 119 ~~vilv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
.|++|+.||. |+.......++.+.++.... ...+.+..|||++|+|+.+.++|+.+.+..+++
T Consensus 163 apLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~~ 226 (227)
T 3l82_B 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKRA 226 (227)
T ss_dssp SCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC--
T ss_pred CeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhcC
Confidence 9999999995 78877888999999987765 478999999999999999999999999887654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-19 Score=127.38 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=80.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC-Cccccc---------CcccceeEEEEE----cCeEEEEEEcCCC-------h
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG-EVVTTH---------PTVGSNVEELVY----KNIRFEAWDVGGQ-------E 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~-~~~~~~---------~~~~~~~~~~~~----~~~~~~~~D~~g~-------~ 72 (183)
....++|+|+|++|+|||||++++.+. .++... ++.......+.. ....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 456699999999999999999998775 333221 222222222222 2468999999997 4
Q ss_pred hhHhhHH-------hhccC-------------CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWA-------TYYRG-------------THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.+..... .++.. +++++|+.+++.. +++.....+...+. ...|+++|+||.|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHHH----hcCCEEEEEEeCCCCC
Confidence 4433332 33322 3446666665421 23333222222222 3578999999999864
Q ss_pred CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
........+.. .......+++++++||+++ |++++|.++.+.+.+..|
T Consensus 170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 32211111111 1111223567999999999 999999999998876654
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=116.79 Aligned_cols=152 Identities=15% Similarity=0.157 Sum_probs=93.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-------ccCcc----------cceeEEE------------------EE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-------THPTV----------GSNVEEL------------------VY 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-------~~~~~----------~~~~~~~------------------~~ 58 (183)
..+..+|+++|++|+|||||++++++..... ..+.. +.....+ ..
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 3466899999999999999999997642110 00000 1111111 11
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCH
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTP 136 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~ 136 (183)
....+.+|||+|+..... .+....+.+++|+|+++.... ...+ ... .+.|+++|+||+|+.+. ...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcchhhHH
Confidence 345789999999521111 111356899999999765421 1111 111 13678999999998532 234
Q ss_pred HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 137 AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
.++.+.+... ....+++++|+++|.|++++++++.+.+...
T Consensus 175 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 175 EKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 4444433221 2346899999999999999999999887654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-18 Score=123.12 Aligned_cols=134 Identities=18% Similarity=0.103 Sum_probs=99.5
Q ss_pred HHHHHhccCCcc--cccCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc-cHHHHHHHH
Q 030113 32 TTLYKLHLGEVV--TTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA-RISIMKDEL 107 (183)
Q Consensus 32 tl~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~ 107 (183)
+++.+++.+.|. .+.+|+|..+. ... .+.++++||+ ++++..++..+++++|++|+|||++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888775 36688885544 332 2337999999 8999999999999999999999999987 688888887
Q ss_pred HHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 108 FRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 108 ~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
..+.. .++|+++|+||+|+.+.....+..+..... ... ++++++||++|.|++++|+++..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 76543 469999999999996542211122222111 111 57999999999999999988754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=120.72 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=88.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc--------cccCc---------------------ccceeE-----------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV--------TTHPT---------------------VGSNVE----------- 54 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~--------~~~~~---------------------~~~~~~----------- 54 (183)
.....|+++|++|+|||||+|++.+.... ...++ ......
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999752100 00000 000000
Q ss_pred ---------EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q 030113 55 ---------ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA 125 (183)
Q Consensus 55 ---------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~ 125 (183)
.+...+..+.++||+|.... .......+|.+++|+|++.+.....+.. .+ ...|.++|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 00124568899999995322 2334678999999999986532211111 11 235789999
Q ss_pred eCCCCCCCCCH----HHHHhhcCcCcc--CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 126 NKQDLKDAMTP----AEITDALSLHSI--KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 126 nK~Dl~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
||+|+.+.... .++...+..... .....+++.+|++++.|+++++++|.+.+.
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99998532111 112222221110 012457899999999999999999988653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=132.08 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=85.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC------------cc-------cccCcccceeEEEEEc---------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE------------VV-------TTHPTVGSNVEELVYK--------------- 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~------------~~-------~~~~~~~~~~~~~~~~--------------- 59 (183)
..+..+|+|+|+.++|||||+++++... +. ....|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999997531 11 0112444444444443
Q ss_pred -CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 60 -NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 -~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
+..+.+|||||+.++...+..+++.+|++|+|+|++++.++.....|.. ... .+.|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcc
Confidence 6789999999999999999999999999999999999877766544433 322 358999999999975
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=125.78 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=79.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc--c--ccCcccceeEEEEE--------------------------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV--T--THPTVGSNVEELVY-------------------------------- 58 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~--~--~~~~~~~~~~~~~~-------------------------------- 58 (183)
...++|+|+|.+|+|||||+|+|++..+. . ..++... ...+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 35689999999999999999999998753 1 1111111 000000
Q ss_pred -------cC---eEEEEEEcCCChh-----------hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCC
Q 030113 59 -------KN---IRFEAWDVGGQER-----------LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 59 -------~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 117 (183)
.. ..+.+|||||... +...+..++..+|++++|+|+++.........++..+.. .
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~ 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----H 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----C
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----c
Confidence 00 3689999999764 456677788999999999999875444445555544422 3
Q ss_pred CCeEEEEEeCCCCCCC
Q 030113 118 HSVVLIFANKQDLKDA 133 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~ 133 (183)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 5889999999998754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=123.42 Aligned_cols=158 Identities=14% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc---------cCcccceeEEEEE----cCeEEEEEEcCCChhhH-----
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---------HPTVGSNVEELVY----KNIRFEAWDVGGQERLR----- 75 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---------~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~----- 75 (183)
..-.++|+|+|++|+|||||++.|++..++.. .++.+.....+.. ....+.+||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 34568999999999999999999998765321 1122211111111 13478999999975431
Q ss_pred --hh-------H-----------HhhccCCC--EEEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 76 --TS-------W-----------ATYYRGTH--AVIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 76 --~~-------~-----------~~~~~~~d--~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.. . ..++.+++ +++|+.+++. .+++... .++..+ . .+.|+|+|+||+|+..
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCcc
Confidence 11 0 12234444 4555554431 2344443 344443 2 2689999999999864
Q ss_pred CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
........+... ......+++++++|++++.++++++..+.+.++
T Consensus 182 ~~ev~~~k~~i~-~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 182 PEECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHH-HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 322222111111 111223567999999999999998888776543
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=129.05 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC--C------------ccc-------ccCcccceeEEEEEcCeEEEEEEcCCChhhHh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG--E------------VVT-------THPTVGSNVEELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~--~------------~~~-------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
.+|+|+|+.++|||||..+|+.. . +.. ...|+......+.+++..+.++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 57899999999999999998521 0 000 12344444556677889999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhcCcC-------
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA---EITDALSLH------- 146 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~---~~~~~~~~~------- 146 (183)
.+...++-+|++++|+|+.++-.-. ....|..... .++|.++++||+|........ ++.+.+...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 9999999999999999998763222 2233333333 358889999999976443222 111111100
Q ss_pred -------------------------------------------------ccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 147 -------------------------------------------------SIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 147 -------------------------------------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
.....-.|++..||+++.|++.+++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 0011235788999999999999999999876
Q ss_pred hc
Q 030113 178 TG 179 (183)
Q Consensus 178 ~~ 179 (183)
+.
T Consensus 238 p~ 239 (638)
T 3j25_A 238 YS 239 (638)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=123.13 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=97.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc--Ccc--------------------------------------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTV-------------------------------------------- 49 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~--~~~-------------------------------------------- 49 (183)
..++|+|+|.+++|||||+|++.+..+.+.. .+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4589999999999999999999987652111 000
Q ss_pred ----cce----eEEEEE-cCeEEEEEEcCCChh-------------hHhhHHhhc-cCCCEEEEEEeCCCcccHHHHHHH
Q 030113 50 ----GSN----VEELVY-KNIRFEAWDVGGQER-------------LRTSWATYY-RGTHAVIVVIDSTDRARISIMKDE 106 (183)
Q Consensus 50 ----~~~----~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~ 106 (183)
++. ...+.. ...++.++||||-.. ....+..++ ..+|++++|+|++.+..-......
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 000 011111 234689999999332 334445555 578999999999865322222122
Q ss_pred HHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 107 LFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 107 ~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
+..+ .. .+.|+++|+||+|+.+.... ..+.. ...........+++.+||++|.|++++++.+.+
T Consensus 210 l~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2222 22 46899999999998754332 12211 111111224457899999999999999999886
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-17 Score=121.24 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=66.5
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA- 137 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~- 137 (183)
.+..+.++||||....... ....+|++++|+|++....+..+.. .. .+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 3678999999996654332 3588999999999975532111100 00 136789999999986432222
Q ss_pred ---HHHhhcCcCcc--CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 138 ---EITDALSLHSI--KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 138 ---~~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
++.+.+..... .....+++++||++|.|++++++++.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111111110 111357999999999999999999988764
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-17 Score=114.12 Aligned_cols=118 Identities=14% Similarity=-0.078 Sum_probs=70.6
Q ss_pred eEEEEEEcCCChhhHhhH------HhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSW------ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~ 134 (183)
..+.+|||||+....... ...+.+ +++++++|+....+..................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 489999999987654321 234566 8999999986443322222111111000011357899999999986542
Q ss_pred CHHHHHhhcCc------C-------------------ccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 135 TPAEITDALSL------H-------------------SIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 135 ~~~~~~~~~~~------~-------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
...++.+.+.. . .......+++++||++++|++++++++.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 22112221100 0 000122468999999999999999999987754
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=111.28 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=77.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGT 85 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 85 (183)
...+|+++|.||+|||||+|+|.+.... ....|.......+.+.+.+++++||||-.. ........++.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 4479999999999999999999886532 134566677777888999999999999321 223445567889
Q ss_pred CEEEEEEeCCCcccH-HHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 86 HAVIVVIDSTDRARI-SIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 86 d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
|++++|+|++++..- ..+...+.... ......|.+++.||.|.
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK 194 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence 999999999987432 22223332221 11123556666777764
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=117.53 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=79.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--------------cc-------cccCcccceeEEEEEc-------CeEEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--------------VV-------TTHPTVGSNVEELVYK-------NIRFEAW 66 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--------------~~-------~~~~~~~~~~~~~~~~-------~~~~~~~ 66 (183)
.+-.+|+|+|+..+|||||..+|+... +. +...|+......+.++ +..++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 355799999999999999999885211 00 0112333344445553 5789999
Q ss_pred EcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
|||||.+|.......++-+|++|+|+|+.++-.-. ....|..... .++|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEccccccC
Confidence 99999999999999999999999999998764322 2233333333 3589999999999754
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=110.82 Aligned_cols=113 Identities=20% Similarity=0.280 Sum_probs=89.3
Q ss_pred cCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHH---HHhCCCC-CCCCeEEEEEeC-CCCCCCCCHHHHHhh
Q 030113 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELF---RLLGHED-LQHSVVLIFANK-QDLKDAMTPAEITDA 142 (183)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~~vilv~nK-~Dl~~~~~~~~~~~~ 142 (183)
.+||.+.+..|..|++++|++|||+|.+|.++++ ....+. .++.... ..+.|++|+.|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4689999999999999999999999999988754 334332 4444321 357899999997 588888888999999
Q ss_pred cCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 143 LSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++..... ..+.+..|||.+|+|+.|.++|+.+.+.++.+
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~~ 311 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKRA 311 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC---
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhhcC
Confidence 9877654 78999999999999999999999999877653
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-15 Score=107.46 Aligned_cols=79 Identities=24% Similarity=0.270 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc-c--ccCcccceeEEEEEcC-----------------eEEEEEEcCCChhhH--
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-T--THPTVGSNVEELVYKN-----------------IRFEAWDVGGQERLR-- 75 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~-~--~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~-- 75 (183)
++|+++|.+|+|||||+|++.+.... . ..+|.+.+...+.+.+ ..+++|||||..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999986631 1 1234444444444433 579999999986542
Q ss_pred -----hhHHhhccCCCEEEEEEeCCC
Q 030113 76 -----TSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 76 -----~~~~~~~~~~d~ii~v~d~~~ 96 (183)
.....+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 233456789999999999986
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=103.09 Aligned_cols=152 Identities=24% Similarity=0.173 Sum_probs=86.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccc----------------eeEEEEEc-----------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGS----------------NVEELVYK----------------- 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~----------------~~~~~~~~----------------- 59 (183)
..+.++|+++|++|+|||||+++++...+.. ..++++. ....+..+
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 3567999999999999999999998654322 1111111 11111100
Q ss_pred ---CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--C
Q 030113 60 ---NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--M 134 (183)
Q Consensus 60 ---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~ 134 (183)
...+.++|++|.-... ..+-...+..+.++|........ ...... ...|.++|+||+|+.+. .
T Consensus 115 ~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~---~~~~~~------~~~~~iiv~NK~Dl~~~~~~ 182 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI---EKHPGI------MKTADLIVINKIDLADAVGA 182 (226)
T ss_dssp CGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT---TTCHHH------HTTCSEEEEECGGGHHHHTC
T ss_pred hcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH---hhhhhH------hhcCCEEEEeccccCchhHH
Confidence 1145566666531110 01112345566677753221110 000111 13677999999998542 2
Q ss_pred CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 135 TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
...+..+.+... ....+++++||++|.|++++|+++.+.+...
T Consensus 183 ~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 183 DIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp CHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 333333333211 2345899999999999999999999887653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-15 Score=107.29 Aligned_cols=153 Identities=20% Similarity=0.162 Sum_probs=88.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc------CCcc--c--cc--Cc----------cc-----ceeEE-----------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL------GEVV--T--TH--PT----------VG-----SNVEE----------- 55 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~------~~~~--~--~~--~~----------~~-----~~~~~----------- 55 (183)
-.+...++++|++|+|||||++.+.+ +... . .. .. .+ .....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35667899999999999999999973 2210 0 00 00 00 00000
Q ss_pred -----------EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q 030113 56 -----------LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124 (183)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv 124 (183)
+...+..+.++||+|...-.. .....+|.+++|+|+........+.... ...+.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 112467899999999654322 2347899999999986543211111111 12345778
Q ss_pred EeCCCCCCCCC-----HHHHHhhcCcCccC--CCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 125 ANKQDLKDAMT-----PAEITDALSLHSIK--NHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 125 ~nK~Dl~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+||+|+..... .+++...+...... ....+++.+|++++.|++++++.|.+...
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999753211 11222222111100 01346888999999999999999988654
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-14 Score=102.69 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc-cc--ccCcccceeEEEEE---------------------cCeEEEEEEcCCChh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VT--THPTVGSNVEELVY---------------------KNIRFEAWDVGGQER 73 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~-~~--~~~~~~~~~~~~~~---------------------~~~~~~~~D~~g~~~ 73 (183)
++|+++|.+|+|||||++++.+... .. ...|...+...... ....+++|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5789999999999999999987531 11 11233333322222 245799999999754
Q ss_pred h-------HhhHHhhccCCCEEEEEEeCCC
Q 030113 74 L-------RTSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 74 ~-------~~~~~~~~~~~d~ii~v~d~~~ 96 (183)
. ......+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2344556899999999999986
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-13 Score=98.15 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=52.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEc-----------------CeEEEEEEcCCChhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYK-----------------NIRFEAWDVGGQERL 74 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 74 (183)
....+|+++|.+|+|||||++++.+..... ...|...+...+.+. ...+++|||||..+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 456899999999999999999999875421 223344444444432 235999999997654
Q ss_pred Hh-------hHHhhccCCCEEEEEEeCCCcc
Q 030113 75 RT-------SWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 75 ~~-------~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
.. .+..+++++|++++|+|+++..
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 32 5677889999999999998643
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=92.10 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=71.7
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK 149 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 149 (183)
++++..+...+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+........+.... ..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~--~~ 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISI--YR 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH--HH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHH--HH
Confidence 6666677778899999999999999886 78877787775533 46999999999999653210111111111 11
Q ss_pred CCceEEEEeecccCCCHHHHHHHHHH
Q 030113 150 NHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
..+++++++||+++.|++++++.+..
T Consensus 140 ~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 140 DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 12457999999999999999987654
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=91.63 Aligned_cols=154 Identities=18% Similarity=0.098 Sum_probs=87.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc------cCCccc----c-cC-----------cccceeEEE----------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH------LGEVVT----T-HP-----------TVGSNVEEL---------------- 56 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~------~~~~~~----~-~~-----------~~~~~~~~~---------------- 56 (183)
.+...|+++|.+|+||||++++|+ +....- . .+ ..++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 446789999999999999999997 433210 0 00 001111110
Q ss_pred -EEcCeEEEEEEcCCChhh----HhhHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEeCC
Q 030113 57 -VYKNIRFEAWDVGGQERL----RTSWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV-LIFANKQ 128 (183)
Q Consensus 57 -~~~~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~v-ilv~nK~ 128 (183)
...+..+.++||||.... ....... ...+|.+++|+|+............+... .|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~--------~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDK--------VDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHH--------HCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhh--------cCceEEEEeCC
Confidence 114678999999996532 1111111 23789999999998764322222222221 454 8999999
Q ss_pred CCCCCCCH-HHHHhhcCcCc--------cC--CCceEEEEeecccCCC-HHHHHHHHHHh
Q 030113 129 DLKDAMTP-AEITDALSLHS--------IK--NHDWHIQACSALTGDG-LVDGLEWISQR 176 (183)
Q Consensus 129 Dl~~~~~~-~~~~~~~~~~~--------~~--~~~~~~~~~S~~~~~g-i~~~~~~i~~~ 176 (183)
|....... .......+.-. .. ....+...+|+..|.| +.++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98644321 22222221100 00 0111245579999999 99999998865
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-11 Score=85.92 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=59.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcC-----------------eEEEEEEcCCC--
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKN-----------------IRFEAWDVGGQ-- 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~-- 71 (183)
.+..+++++|++|+|||||+|++.+..... ...+...+...+...+ ..+.+||+||.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 456899999999999999999999865411 2224444445555543 46899999993
Q ss_pred -----hhhHhhHHhhccCCCEEEEEEeCCC
Q 030113 72 -----ERLRTSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 72 -----~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (183)
+.+...+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2244456677889999999999874
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=83.93 Aligned_cols=145 Identities=12% Similarity=0.152 Sum_probs=73.5
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEE--EEEc--C--eEEEEEEcCCChhh------
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEE--LVYK--N--IRFEAWDVGGQERL------ 74 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~--~~~~--~--~~~~~~D~~g~~~~------ 74 (183)
....+...++++|+|++|+|||||++.+++...... ....+..... +... . ..+.++|++|-...
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~ 114 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDS 114 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchh
Confidence 344455567799999999999999999988653221 1111111111 1111 1 36889999974211
Q ss_pred --------HhhH----Hhh---------ccCC--CE-EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 75 --------RTSW----ATY---------YRGT--HA-VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 75 --------~~~~----~~~---------~~~~--d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
...+ ..+ ..++ |+ ++++.|...+- ......+...+. .+.|+|+|.||+|.
T Consensus 115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l--~~~Dieilk~L~----~~~~vI~Vi~KtD~ 188 (427)
T 2qag_B 115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL--KSLDLVTMKKLD----SKVNIIPIIAKADA 188 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC--CHHHHHHHHHHh----hCCCEEEEEcchhc
Confidence 1111 111 1122 33 45556654432 222233334433 46899999999997
Q ss_pred CCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 131 KDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
........+...+... ....+++++.+|..
T Consensus 189 Lt~~E~~~l~~~I~~~-L~~~gi~I~~is~~ 218 (427)
T 2qag_B 189 ISKSELTKFKIKITSE-LVSNGVQIYQFPTD 218 (427)
T ss_dssp SCHHHHHHHHHHHHHH-HBTTBCCCCCCC--
T ss_pred cchHHHHHHHHHHHHH-HHHcCCcEEecCCC
Confidence 6543333333333221 12345667777643
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.7e-12 Score=91.10 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC-----CcccccCcccceeEEEEE-cCeEEEEEEcCCChhhH--------hhHHhhc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG-----EVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQERLR--------TSWATYY 82 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~--------~~~~~~~ 82 (183)
..+++++|.+|+|||||+|++.+. .....+...+++.....+ -...+.++||||-.... .....++
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 357999999999999999999876 222223333333222222 12347999999943211 1112222
Q ss_pred --cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 83 --RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+..+.+++++++...--+..+.. +......+.|+++++||.|....
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred cccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 67899999999843211111100 12222246899999999997643
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=83.98 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=68.3
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCc-
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHS- 147 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~- 147 (183)
.+++|...+..+.+.++++++|+|++++. ......+.... .+.|+++|+||+|+.+.. ...+..+.+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 46889999999999999999999998863 12222233332 368999999999986543 2233333221110
Q ss_pred -cCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 148 -IKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 148 -~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......+++.+||++|.|++++++.+.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 011122699999999999999999997654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-09 Score=78.89 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=86.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc--Ccccce----eEEEEEcC-eEEEEEEcCCChh----hHhhHH-hhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSN----VEELVYKN-IRFEAWDVGGQER----LRTSWA-TYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~--~~~~~~----~~~~~~~~-~~~~~~D~~g~~~----~~~~~~-~~~~ 83 (183)
....++++|++|+|||||+|.+.+-..+... ...+.. ........ ..+.++|++|-.. ...... ..+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3458999999999999999999884322211 000100 01111111 3688999998432 111111 1233
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC---------CCCCHHHHHhhcCcCc-----cC
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK---------DAMTPAEITDALSLHS-----IK 149 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~---------~~~~~~~~~~~~~~~~-----~~ 149 (183)
..+..++ ++...+.. .+..+...+.. .+.|+++|.||.|+. +.....++.+.+.... ..
T Consensus 148 ~~~~~~~-lS~G~~~k---qrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK---NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCCCH---HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCccH---HHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 77652221 12222222222 258999999999963 2223333333332211 00
Q ss_pred -CCceEEEEeec--ccCCCHHHHHHHHHHhhhccC
Q 030113 150 -NHDWHIQACSA--LTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 150 -~~~~~~~~~S~--~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.....++.+|+ .++.|++++.+.+.+.+.+.+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 11235788899 566679999999998887654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.6e-10 Score=82.58 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=68.9
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCc-
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHS- 147 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~- 147 (183)
.+++|...+..+...++++++|+|++++.+ .....+...+ .+.|+++|+||+|+.+.. ....+.+.+....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 478899999998899999999999998763 1112223332 368999999999986543 2333333322111
Q ss_pred -cCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 148 -IKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 148 -~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
......+++.+||++|.|++++++.+.+...
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1111236899999999999999999977553
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.9e-11 Score=85.74 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=66.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC------cccccCcccceeEEEEEc-CeEEEEEEcCCChhhH--------hhHHhh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE------VVTTHPTVGSNVEELVYK-NIRFEAWDVGGQERLR--------TSWATY 81 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~--------~~~~~~ 81 (183)
..+++++|.+|+|||||+|++.+.. ....+...+++.....+. ...+.++||||-.... .....+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 3689999999999999999998752 222233333332222221 2238999999943211 111222
Q ss_pred --ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030113 82 --YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138 (183)
Q Consensus 82 --~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~ 138 (183)
.+..+.+++++++....-+..+.. +......+.|+++++||.|.........
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~ 293 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEK 293 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHH
T ss_pred ccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHH
Confidence 356789999998842211111100 1122224689999999999865444333
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.1e-10 Score=77.66 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=60.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccccc-------C-cccceeEEEEE------cCeEEEEEEcCCChh---------
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-------P-TVGSNVEELVY------KNIRFEAWDVGGQER--------- 73 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~-------~-~~~~~~~~~~~------~~~~~~~~D~~g~~~--------- 73 (183)
.++++++|++|+|||||++.+++...+... + ........+.+ -...+.++|++|-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999874332211 0 00000111111 123778999997211
Q ss_pred -hHh--------hHHh----------hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 74 -LRT--------SWAT----------YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 74 -~~~--------~~~~----------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
... .... .+..+++.++++|.... .++.....+...+.. . .++++|++|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh---c-CcEEEEEeccccCCH
Confidence 110 0011 12235888999996521 122222222222222 2 899999999997654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=76.62 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=67.9
Q ss_pred EEcCCCh-hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcC
Q 030113 66 WDVGGQE-RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALS 144 (183)
Q Consensus 66 ~D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~ 144 (183)
-..||+. +....+...++.+|+++.|+|+.++.+... ..+..++ .++|.++|.||+|+.+....+...+.+.
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~ 76 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE 76 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 3568865 567778888999999999999998866432 1222332 3689999999999975322112222221
Q ss_pred cCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 145 LHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 145 ~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
..+.+++.+||+++.|++++++.+.+.+.
T Consensus 77 -----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 77 -----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 12346999999999999999998877664
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-09 Score=76.10 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE--EEEEcCeEEEEEEcCCC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE--ELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~ 71 (183)
....++++++|.+|+|||||+|++.+..........+++.. .+.. +..+.++||||-
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~ 175 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGI 175 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCc
Confidence 35678999999999999999999998775544444333321 1222 347899999994
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.1e-10 Score=77.64 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEE-EcCeEEEEEEcCCCh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELV-YKNIRFEAWDVGGQE 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~ 72 (183)
++++++|.+|+|||||+|++.+.......++.+++..... .-+..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcc
Confidence 6999999999999999999998776555544443322111 124578999999954
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-08 Score=75.56 Aligned_cols=59 Identities=20% Similarity=0.072 Sum_probs=40.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-cc-c----CcccceeEEEE---EcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TT-H----PTVGSNVEELV---YKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~-~----~~~~~~~~~~~---~~~~~~~~~D~~g~~ 72 (183)
..+..+|+|+|.+|+|||||+|++.+.... .. . .|.+...+... ..+..+.++||||-.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 467789999999999999999999987632 21 1 22222222111 146789999999954
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.64 E-value=7.4e-08 Score=74.78 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
..++|+|++|+|||||++.+.|-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 35999999999999999999886533
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.59 E-value=7.2e-08 Score=71.75 Aligned_cols=109 Identities=23% Similarity=0.187 Sum_probs=62.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC------cc----ccc------------------------Cccc---ceeEEE-E
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE------VV----TTH------------------------PTVG---SNVEEL-V 57 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~------~~----~~~------------------------~~~~---~~~~~~-~ 57 (183)
+...|+++|++|+||||+++.+.... .. ... .+.. .....+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 34679999999999999999886421 00 000 0000 000000 0
Q ss_pred EcCeEEEEEEcCCChhhHhh----HHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCC-e-EEEEEeCCC
Q 030113 58 YKNIRFEAWDVGGQERLRTS----WATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS-V-VLIFANKQD 129 (183)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~-vilv~nK~D 129 (183)
.....+.++||||....... .... +..+|.+++|+|+..... .......+. ... | ..+|+||+|
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~-----~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK-----EAVGEIGSIIVTKLD 249 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH-----TTSCSCEEEEEECSS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh-----hcccCCeEEEEeCCC
Confidence 14578999999996543211 1111 236899999999976542 222222221 123 4 789999999
Q ss_pred CCC
Q 030113 130 LKD 132 (183)
Q Consensus 130 l~~ 132 (183)
...
T Consensus 250 ~~~ 252 (432)
T 2v3c_C 250 GSA 252 (432)
T ss_dssp SCS
T ss_pred Ccc
Confidence 854
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-07 Score=68.78 Aligned_cols=110 Identities=24% Similarity=0.175 Sum_probs=63.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc------CCcc----ccc------------CcccceeEEE-----------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL------GEVV----TTH------------PTVGSNVEEL----------------- 56 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~------~~~~----~~~------------~~~~~~~~~~----------------- 56 (183)
+...|+++|++|+||||++.+++. .... ... ...+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467889999999999999988862 2110 000 0111111110
Q ss_pred EEcCeEEEEEEcCCChhhH----hhHH--hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 57 VYKNIRFEAWDVGGQERLR----TSWA--TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~----~~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
...+..+.++||+|..... .... .....+|.+++|+|++....-......+... -.+..+|.||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~-------~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEA-------TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHS-------CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhh-------CCCeEEEEECCCC
Confidence 0024789999999943211 1111 1134579999999998764433333333322 1345789999998
Q ss_pred CC
Q 030113 131 KD 132 (183)
Q Consensus 131 ~~ 132 (183)
..
T Consensus 252 ~~ 253 (443)
T 3dm5_A 252 SA 253 (443)
T ss_dssp CS
T ss_pred cc
Confidence 64
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-07 Score=66.08 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=59.5
Q ss_pred cCCCh-hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC
Q 030113 68 VGGQE-RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH 146 (183)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~ 146 (183)
.|||. +....+...+.++|+++.|+|+.++.+.... .+. . . ++|.++|.||+|+.+....+...+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-l-l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-F-S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-C-T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-h-c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 36654 3456677788999999999999988543221 011 1 1 6899999999999754222222222211
Q ss_pred ccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 147 SIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
.+.++ .+|++++.|++++++.+.+
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 23457 9999999999999887654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-06 Score=63.54 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=64.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc------CCcc----ccc------------CcccceeEEE-----------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL------GEVV----TTH------------PTVGSNVEEL----------------- 56 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~------~~~~----~~~------------~~~~~~~~~~----------------- 56 (183)
+...|+++|++|+||||++..++. .... ... ...+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 356788999999999999988852 1110 000 0111111100
Q ss_pred EEcCeEEEEEEcCCChh------hHhhHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 57 VYKNIRFEAWDVGGQER------LRTSWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~------~~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
......+.++||||... ........ ....+.+++|+|+............+.... .+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-------~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-------PIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-------SSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-------CCcEEEEecc
Confidence 01256889999999543 11111111 225699999999987654434444444332 3468899999
Q ss_pred CCCC
Q 030113 129 DLKD 132 (183)
Q Consensus 129 Dl~~ 132 (183)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9753
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=62.26 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=40.2
Q ss_pred cCeEEEEEEcCCChh--hHh-hHH-----hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCC
Q 030113 59 KNIRFEAWDVGGQER--LRT-SWA-----TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQD 129 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~D 129 (183)
....+.++||||... ... .+. .....+|.+++|+|+....... .....+.. ..+ ..+|.||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY---DLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH---HHHHHHHh-----hCCCCEEEEeCCC
Confidence 456899999999766 322 111 1245789999999987543222 22222211 134 678899999
Q ss_pred CCC
Q 030113 130 LKD 132 (183)
Q Consensus 130 l~~ 132 (183)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.18 E-value=7.2e-07 Score=63.40 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=55.5
Q ss_pred hhccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhcCcCccCCCceE
Q 030113 80 TYYRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT----PAEITDALSLHSIKNHDWH 154 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~ 154 (183)
..+.++|.+++|+|+.+|.. ...+...+..... .++|.++|+||+|+.+... ...+.+.+. ..+.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g~~ 152 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIGYD 152 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHTCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCCCe
Confidence 46889999999999987653 3333333333222 4688999999999976532 122222221 12346
Q ss_pred EEEeecccCCCHHHHHHH
Q 030113 155 IQACSALTGDGLVDGLEW 172 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~ 172 (183)
++.+|+.++.|++++++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999998877654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=4.7e-06 Score=59.87 Aligned_cols=110 Identities=24% Similarity=0.222 Sum_probs=60.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc----------c------------cCcccceeEEEE---------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----------T------------HPTVGSNVEELV--------------- 57 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~----------~------------~~~~~~~~~~~~--------------- 57 (183)
.+.-.++++|++|+||||+++.+++...+. . ....++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 456788999999999999999886421110 0 001111111000
Q ss_pred --EcCeEEEEEEcCCChhhHh----hHHh--hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 58 --YKNIRFEAWDVGGQERLRT----SWAT--YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 58 --~~~~~~~~~D~~g~~~~~~----~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
.....+.++|++|...... .... -.-..|-.+++.|+............+.... ....+++||.|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~-------~it~iilTKlD 279 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAV-------KIDGIILTKLD 279 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHS-------CCCEEEEECGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhc-------CCCEEEEeCcC
Confidence 0234677899999543221 1111 1124789999999876543333323332221 12378899999
Q ss_pred CC
Q 030113 130 LK 131 (183)
Q Consensus 130 l~ 131 (183)
..
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 64
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.07 E-value=8.1e-06 Score=60.83 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=62.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc-------cCCcc----ccc-C-----------cccceeEE-----------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH-------LGEVV----TTH-P-----------TVGSNVEE----------------- 55 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~-------~~~~~----~~~-~-----------~~~~~~~~----------------- 55 (183)
+...|+++|.+|+||||++..|+ +.... ... + ..++....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678889999999999988885 32211 000 0 00111100
Q ss_pred EEEcCeEEEEEEcCCChhhHh-hHH-----hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCC
Q 030113 56 LVYKNIRFEAWDVGGQERLRT-SWA-----TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQ 128 (183)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~ 128 (183)
....+..+.++||||...... ... ..+..++.+++|+|+............+..- .+ .-+|.||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~--------l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEA--------LPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHH--------SCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhcc--------CCCeEEEEecC
Confidence 011357899999999644321 111 1234689999999998654332222222221 22 34789999
Q ss_pred CCCCC
Q 030113 129 DLKDA 133 (183)
Q Consensus 129 Dl~~~ 133 (183)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 97543
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=6.2e-06 Score=61.51 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=23.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+..-|+|+|++++|||||+|++++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 45678899999999999999999985
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.9e-07 Score=69.47 Aligned_cols=85 Identities=24% Similarity=0.216 Sum_probs=50.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE----cCeEEEEEEcCCChh--hHhhH--------H
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQER--LRTSW--------A 79 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~--~~~~~--------~ 79 (183)
......|+++|.+|+||||+.++|.........++..+....+.. ......+||..|++. ....+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999754221111221111000000 113446788888732 23333 5
Q ss_pred hhccCCCEEEEEEeCCCcc
Q 030113 80 TYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~ 98 (183)
.++...++.++|+|.++..
T Consensus 116 ~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS
T ss_pred HHHHhCCCCEEEEeCCCCC
Confidence 5666778999999999873
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-05 Score=57.49 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=53.0
Q ss_pred hccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 81 YYRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
...++|.+++|... .|.. ...+..++..... .++|.++|+||+|+.+......+.+.... ....+++++.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDI--YRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHH--HHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHH--HHhCCCcEEEEe
Confidence 46889999988665 4543 3333333332211 35788999999999764321112222221 123355699999
Q ss_pred cccCCCHHHHHHHH
Q 030113 160 ALTGDGLVDGLEWI 173 (183)
Q Consensus 160 ~~~~~gi~~~~~~i 173 (183)
+.++.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999987653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.86 E-value=7.4e-06 Score=53.67 Aligned_cols=22 Identities=45% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
+++++|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7e-05 Score=53.04 Aligned_cols=23 Identities=48% Similarity=0.576 Sum_probs=19.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
+.-.++++|++|+||||++..++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44578899999999999998875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.5e-05 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.-.++++|++|+||||+++.+++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34456899999999999999999775
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=1.6e-05 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999975
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=2.2e-05 Score=51.45 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-.++|+|++|+|||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36789999999999999999764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.2e-05 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+...++|+|++|+|||||++.+.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999999988654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.66 E-value=5.3e-06 Score=58.96 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.-.++++|++|+|||||+|.+.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc
Confidence 35789999999999999999987643
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2.9e-05 Score=50.76 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=24.8
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...+...+.-.++++|++|+|||||++.+++.
T Consensus 29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 334444344567899999999999999988654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.64 E-value=2.2e-05 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.--++|+|++|+|||||++.+.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999999764
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2.7e-05 Score=53.28 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++|+|+.|+|||||++.+++-..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3578999999999999999987543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.3e-05 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-.++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45789999999999999999764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00019 Score=53.33 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=37.2
Q ss_pred CeEEEEEEcCCChhhHh-hHH-----hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRT-SWA-----TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...+.++||||...... ... .....++.+++|+|+............+...+ ...-+|.||.|...
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l-------~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV-------GVTGLVLTKLDGDA 251 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHT-------CCCEEEEESGGGCS
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcC-------CceEEEEeCcCCcc
Confidence 56799999998543211 111 11236899999999875432222222222211 12467889999653
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.8e-05 Score=50.50 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~ 38 (183)
--++++|++|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 356899999999999999654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.59 E-value=3.4e-05 Score=52.43 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++++|+.|+|||||++.+++-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.59 E-value=2.9e-05 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.-.++|+|++|+|||||++.+.+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999999764
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.7e-05 Score=51.54 Aligned_cols=25 Identities=36% Similarity=0.296 Sum_probs=21.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+|+|+.|+|||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999998866
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3e-05 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
--++|+|++|+|||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999997643
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=4.7e-05 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.100 Sum_probs=22.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+...|+|.|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 56678999999999999999998754
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.57 E-value=3.5e-05 Score=49.41 Aligned_cols=27 Identities=30% Similarity=0.210 Sum_probs=22.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.+.-.++++|+.|+|||||++.+++..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344468899999999999999998754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.54 E-value=4.9e-05 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
+.-.|+|+|++||||||+++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.54 E-value=4.3e-05 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|+.|+|||||++.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.54 E-value=5.4e-05 Score=50.27 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+.+.-.|+|+|++|+|||||+++|.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 345556889999999999999999754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.54 E-value=4.5e-05 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.53 E-value=4.7e-05 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|+.|+|||||++.+++-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.53 E-value=4.5e-05 Score=53.42 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=5.2e-05 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999998764
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.52 E-value=8.4e-05 Score=53.17 Aligned_cols=32 Identities=34% Similarity=0.235 Sum_probs=24.9
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
|.........+-|+|+|++|||||||++.+.+
T Consensus 83 ~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 83 FLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333455678899999999999999988854
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00082 Score=44.60 Aligned_cols=68 Identities=9% Similarity=0.030 Sum_probs=45.8
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~ 131 (183)
...+.++|+|+... ......+..+|.+++++..+... ......+..+..... ..+.++.+|.|+.|..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 46899999997652 33445567799999999987543 445444444433221 2456789999999854
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=5.1e-05 Score=52.67 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.51 E-value=5.1e-05 Score=52.93 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=5.9e-05 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.138 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.50 E-value=5.4e-05 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.-.|+|+|++|+||||+++.+.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.50 E-value=6.1e-05 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|+.|+|||||++.+++-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.50 E-value=6.3e-05 Score=50.45 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.+..-|+++|++|+||||+++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 344568899999999999999997653
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.49 E-value=5.7e-05 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|+.|+|||||++.+++-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.49 E-value=5.6e-05 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 357899999999999999998754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.49 E-value=4.8e-05 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..|+++|++||||||+++.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998653
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.49 E-value=9.3e-05 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.48 E-value=8.3e-05 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
-.++++|++|+|||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4689999999999999999988654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.48 E-value=6e-05 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.47 E-value=7e-05 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++++|+.|+|||||++.+++-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.46 E-value=7.2e-05 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 367899999999999999998753
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.46 E-value=7.2e-05 Score=52.53 Aligned_cols=24 Identities=50% Similarity=0.522 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=6.5e-05 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|+|+.|+|||||++.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.45 E-value=7.3e-05 Score=49.82 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
...++++|++||||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999997653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.45 E-value=5e-05 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++++|++|+|||||++.+++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=7.7e-05 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.44 E-value=5.2e-05 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++++|+.|+|||||++.+++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999876
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.44 E-value=6.2e-05 Score=49.57 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999975
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=48.29 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+...|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999988654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0001 Score=47.89 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|+++|++|+||||+++.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998854
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.43 E-value=7.5e-05 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.43 E-value=8e-05 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
=.++|+|+.|+|||||++.+++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999885
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.6e-05 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|+.|+|||||++.+++-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987643
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.41 E-value=9.8e-05 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
-.++++|++|+|||||++.+.+...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 46789999999999999999876543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.8e-05 Score=47.89 Aligned_cols=21 Identities=38% Similarity=0.287 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998854
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=7.5e-05 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.=.++|+|++|+|||||++.|.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3445689999999999999998875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.40 E-value=7.3e-05 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.=.++|+|++|+||||+++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34456899999999999999998763
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.40 E-value=9.7e-05 Score=51.42 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|+.|+|||||++.+++-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998865
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=9.7e-05 Score=52.73 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=23.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+...++|+|++|+|||||++.+.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456678999999999999999998763
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=48.49 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.....|++.|++|+||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999998854
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=47.55 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHh
Q 030113 18 YKIIIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l 37 (183)
..|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999999
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+|+|+.|+|||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557799999999999999998865
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.38 E-value=9.3e-05 Score=48.72 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+|+||+|+|||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999998643
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.37 E-value=9e-05 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..|+++|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998653
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=20.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
++...|+++|++||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988853
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.37 E-value=9.3e-05 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+|+|+|++||||||+++.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999876
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=48.92 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+...|+++|++|+||||+++.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45677899999999999999988653
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4588999999999999999976
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.190 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+|+|++||||||+++.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00014 Score=48.40 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+...|+|+|++|+||||+++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999998864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.35 E-value=9.4e-05 Score=49.24 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+|+|++|+||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998854
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00012 Score=47.89 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998853
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=53.51 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+++-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 468999999999999999987543
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00021 Score=46.62 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=24.7
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...........+++.|++|+|||++++.+...
T Consensus 34 l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 34 TIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 334444455567899999999999999988653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=48.66 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.|+++|++||||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=48.27 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...|+|+|++|+||||+++.+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0002 Score=51.00 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+|+|++|+|||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999998876
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00017 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999998854
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00011 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++|+|++|+|||||++.+++
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999976
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00015 Score=48.78 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998843
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00013 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+++-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 468999999999999999987543
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.29 E-value=7.1e-05 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=15.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhc-cC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLH-LG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~-~~ 40 (183)
.-.++|+|++|+||||+++.+. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468899999999999999998 54
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=8.7e-05 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|++|+|||||++.+++-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 468999999999999999997643
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00016 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00013 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++++|++|||||||++.+++-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46899999999999999998754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00019 Score=50.72 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=22.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...+...|+|.|++|||||||++.+.+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999988754
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=47.21 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|++.|++|+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999865
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00019 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
-.++++|++|+|||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 467899999999999999998 54
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=47.41 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+|.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998854
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++++|++|||||||++.+++-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3568999999999999999987543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=47.48 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998854
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+.+-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 468999999999999999987543
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00015 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|++|+|||||++.+.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 356899999999999999998754
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00013 Score=51.10 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++++|++|+|||||++.+++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999764
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00024 Score=47.20 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.+...|++.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999988853
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00022 Score=46.75 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+...|+++|.+|+||||+++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567889999999999999998854
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988853
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00015 Score=52.94 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+++-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 468999999999999999987643
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00022 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+..+|++.|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998853
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=47.81 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00015 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|||||||++.+++-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 356899999999999999998754
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.23 E-value=6.6e-05 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00011 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.-+++|+|++|+|||||++.+.+-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997753
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00011 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..-.++++|++|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999764
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=47.20 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..++++|++|+|||||++++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46789999999999999999764
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00019 Score=48.73 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
+...|++.|++||||||+++.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999885
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999999998854
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00025 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=21.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.+...|+|+|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0002 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+++|+|||||+|...+|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998854
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00023 Score=46.98 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998853
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0058 Score=45.60 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=23.5
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+--...--|++.||||+|||+|++++++.
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33445567899999999999999999754
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00025 Score=46.11 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=24.1
Q ss_pred hhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 9 WFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 9 ~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...........+++.|++|+|||++++.+...
T Consensus 35 ~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 35 IQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 33334455567899999999999999888643
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00016 Score=52.48 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|+|++|+||||+++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999998653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00021 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
-.++|+|++|+|||||++.+.+-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00023 Score=47.83 Aligned_cols=21 Identities=33% Similarity=0.380 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00018 Score=49.63 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++++|++|+|||||++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999764
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00025 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
+...|++.|++|+||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 44578899999999999999886
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0002 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998853
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00029 Score=46.79 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...|++.|++||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00029 Score=49.66 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.....|++.|++|+||||+++++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999999999864
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00027 Score=50.21 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999998863
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00021 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|||||||++.+++-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 357899999999999999998743
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00012 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+++-..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 568999999999999999987543
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00029 Score=47.14 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|++.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0002 Score=46.48 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998854
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00033 Score=47.67 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+..-|+|.|+.|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44578899999999999999999764
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00026 Score=45.81 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...+.++|++|+|||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999865
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00024 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998853
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00019 Score=46.81 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=16.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998853
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00024 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.-.++|+|++|+|||||++.+.+-.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3478899999999999999997753
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00031 Score=46.94 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|++.|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999998864
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=49.90 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=21.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...-+++.|+||+|||+|++.++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44456778899999999999998653
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00034 Score=49.69 Aligned_cols=24 Identities=50% Similarity=0.623 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++++|++|+||||+++.+++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345788999999999999998864
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00024 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|+|++|||||||...|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998854
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00036 Score=47.58 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.....|+++|.+|+||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998853
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00026 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.-.++|+|++|+||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34446899999999999999999763
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00033 Score=47.76 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.+.+.|+|.|++|+||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00025 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-.++++|++|+|||||++.+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999764
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00049 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998853
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00013 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++++|++|||||||++.+++-..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3568999999999999999987543
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00032 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.249 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988854
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00038 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|+++|.+|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999998865
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00028 Score=49.44 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++++|++|+|||||++.+++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999764
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00038 Score=44.71 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00036 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00047 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.+...|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00048 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--|+|+|+|||||+|...+|+.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999988854
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00028 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.....|+++|++|+||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457889999999999999998754
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00046 Score=47.64 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988854
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0003 Score=52.25 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.=.++|+|++|+||||+++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 33346889999999999999998763
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00073 Score=48.89 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=23.3
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...+....+|+++|++|+||||+...+++
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34455667899999999999999987754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00037 Score=53.12 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
-.++|+|++||||||+++.+++--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999997643
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00057 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
....+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00052 Score=46.17 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00048 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00047 Score=45.31 Aligned_cols=21 Identities=43% Similarity=0.469 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00033 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
..-.++|+|+.|+|||||++.+++-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44578999999999999999987643
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0009 Score=46.62 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
......+++.|++|+|||++++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 566778999999999999999998653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00037 Score=47.12 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++++|++|+|||||+..+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999998864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00052 Score=49.88 Aligned_cols=24 Identities=50% Similarity=0.623 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++++|++|+||||+++.+++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445789999999999999998864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00046 Score=45.10 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988853
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00047 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998854
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00046 Score=44.53 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988854
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00039 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345899999999999999999653
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00071 Score=47.38 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.....+++.|++|+|||++++.++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44556899999999999999999654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00057 Score=51.61 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.-.++|+|++|+|||||++.|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3456789999999999999998864
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00058 Score=43.92 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998853
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00047 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
+.-+++++|++|+|||||++.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999998764
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0007 Score=46.07 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|++.|++|+||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567889999999999999998864
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.001 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+++.|++|+|||+|+..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999988653
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00065 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.+++.|+||+|||+++.+++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999887754
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00019 Score=48.06 Aligned_cols=21 Identities=48% Similarity=0.502 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998854
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00046 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++|+|++|+|||||+..+++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3568999999999999988864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00076 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.=.++++|+.|+|||||++.+.+-..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34679999999999999999987543
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00076 Score=45.17 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+++|.+|+||||+++.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456788999999999999998854
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00094 Score=51.23 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=26.0
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
....+.+.=.++++|+.|+|||||++.+++-..
T Consensus 18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 334455566789999999999999999987543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00047 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-.|+++|++|+||||+.+.+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998854
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0006 Score=43.17 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3699999999999999874
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00083 Score=44.43 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-.+.|++.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3468899999999999999998854
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00079 Score=48.66 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+++.|++|+||||+++.+++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999998866
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00067 Score=52.61 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|+|||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 468999999999999999997754
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00079 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00061 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++++|++|+|||||+..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999976
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.001 Score=47.17 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34456899999999999999999754
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00056 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.++|+|++|+|||||++.+++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999998865
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00064 Score=50.80 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=22.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.+.=+++|+|++|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345678999999999999999998754
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00066 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
--++|+|++|+|||||+..++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45689999999999999998763
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00093 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
+.=.++++|+.|+|||||++.+.+-..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 344689999999999999999987543
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00065 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.153 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445788999999999999999975
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=51.61 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
+.=.++++|+.|+|||||++.+.+...
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 334679999999999999999987543
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0012 Score=49.25 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=22.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-...--|++.||||+|||+|++++++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 345567999999999999999999754
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00076 Score=42.30 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....|++.|++|+|||++++.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3456899999999999999999654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0009 Score=42.05 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=21.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.....|++.|++|+|||++++.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 34466899999999999999998654
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.015 Score=38.77 Aligned_cols=67 Identities=7% Similarity=-0.013 Sum_probs=44.3
Q ss_pred CeEEEEEEcCCC-hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQ-ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...+.++|+|+. ... .....+..+|.+++++..+. .++......+..+.... +.++.+|.|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 468899999986 432 23455678999999998753 34444444444443211 456889999998654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00069 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|+|||||++.+.+-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 478999999999999999997654
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0007 Score=47.74 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.|++|+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3467899999999999999999753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|+|||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999997754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0008 Score=48.14 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.-++|+|+.|+|||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35678899999999999999865
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00092 Score=46.38 Aligned_cols=28 Identities=32% Similarity=0.099 Sum_probs=21.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..++...|+|.|..|+||||+++.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3345678999999999999999988654
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00053 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=18.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.+.|+|.|+.||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999988753
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=45.34 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+|+|++|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0013 Score=50.49 Aligned_cols=25 Identities=40% Similarity=0.224 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++|+|+.|+|||||++.+++-..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578999999999999999987643
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0014 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.153 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++|+|+.|+|||||++.+++-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0048 Score=46.10 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
..+..-|.|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 4567788899999999999999553
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0008 Score=52.36 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++++|++|+|||||++.+.+-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3578999999999999999997754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00093 Score=48.15 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+++.|++|+||||+++.+++.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=46.97 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=21.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
......+++.|++|+|||++++.+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999987654
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.002 Score=45.88 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
....+++.|++|+|||+|+..+..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988864
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=48.65 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=21.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...--+++.||||+|||+|++++++.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456899999999999999999753
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0012 Score=45.58 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999865
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0015 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999988654
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00093 Score=51.86 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|+|||||++.+.+-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999997644
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00097 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+++|++||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0015 Score=50.94 Aligned_cols=24 Identities=42% Similarity=0.271 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++|+|+.|+|||||++.+.+-..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999988543
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
-..+++++|++||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999988853
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00099 Score=46.64 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++|+|++|+|||||+..+++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999988864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.001 Score=45.01 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00097 Score=47.69 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.-.+++.|++|+|||+|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346889999999999999998653
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0016 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+|+|++|+|||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988864
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=48.23 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-...--|++.||||+|||+|++++++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 344566899999999999999999754
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00076 Score=48.19 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=24.9
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
........-.++|.|+||+|||++++.++..
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344567788999999999999999988653
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=49.53 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=22.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+.....-.++++|++|+|||++++.++..
T Consensus 196 l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 196 LSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 33345567899999999999999988643
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...|+|+|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998754
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=48.13 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
..+ .+|+|+.|+|||||+++++
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 345 4599999999999999886
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.002 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-|+++|.+||||||+.+++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4466888999999999999998653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
.++|+|+.|+|||||++.+.+-..+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3789999999999999999876543
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0017 Score=43.18 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0021 Score=46.15 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..|+|+|++|+|||||...|+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.002 Score=45.76 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++++|++|+||||++..+++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345688999999999999988853
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=47.82 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=47.05 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457899999999999999999754
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.002 Score=46.94 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-.++|.|++|+|||++++.+...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44457899999999999999988653
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.002 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47899999999999999988653
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=44.32 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=17.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+..-|++.|++|+||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457788999999999999998854
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=47.68 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-.++|.|++|+|||||++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34457889999999999999998753
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.002 Score=42.04 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999754
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=44.30 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHhc
Q 030113 19 KIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~ 38 (183)
-++|+|++|+|||||+..++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46799999999999977664
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0027 Score=47.13 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=22.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-...--|++.||||+|||+|++++++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHH
Confidence 345567999999999999999999754
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0015 Score=47.33 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.--+.|+|++|+|||||++.++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999998764
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.41 E-value=0.002 Score=46.06 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.|++|+|||+++++++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999653
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0018 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4688999999999999988854
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0014 Score=47.81 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-.++|.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44567889999999999999988653
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0028 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..-|+|+|++|||||||...+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34578899999999999998864
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0025 Score=45.38 Aligned_cols=23 Identities=35% Similarity=0.291 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.-|+|+|++|||||||...++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45789999999999999988643
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0025 Score=47.73 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=23.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
--...--|++.|+||+|||+|++++++.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3355667899999999999999999754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0027 Score=43.39 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35688999999999999998864
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0024 Score=42.59 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3688999999999999873
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.001 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999865
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0018 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
-++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+.++.
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357999999999999999998643
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0031 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=48.21 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-.+++.|++|+|||||++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999865
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...++++|++|+|||||++.+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457899999999999999988653
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0021 Score=46.66 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...|++.|++|+|||+|++.++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999998653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 183 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-40 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 6e-40 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 9e-39 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-35 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 4e-33 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-32 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-31 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 4e-31 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-27 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 1e-25 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-25 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 7e-25 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 4e-24 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 5e-23 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 9e-23 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 2e-22 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 5e-22 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-21 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 5e-21 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 6e-21 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-20 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 6e-20 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 1e-19 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 2e-18 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 3e-18 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 4e-18 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 4e-17 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 1e-16 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-16 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 3e-16 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 1e-15 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 1e-15 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 1e-14 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 2e-13 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 2e-13 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 4e-13 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 3e-12 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 5e-12 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 8e-12 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 8e-12 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 2e-11 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 2e-11 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-11 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 8e-11 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-10 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 8e-10 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 1e-09 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-09 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-09 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 2e-09 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 1e-08 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 2e-08 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 3e-08 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 7e-08 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 8e-08 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 1e-07 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-06 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 4e-06 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 5e-06 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 7e-06 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 6e-05 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 6e-05 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 1e-04 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 1e-04 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 2e-04 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 2e-04 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 0.001 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 0.001 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 132 bits (332), Expect = 3e-40
Identities = 82/171 (47%), Positives = 116/171 (67%)
Query: 7 KFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAW 66
K +F K+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F W
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
DVGGQ+++R W YY GT +I V+D DR RI + EL R++ +++ +++LIFAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
KQDL DAM P EI + L L I++ +W++Q A +GDGL +GL W++
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 132 bits (331), Expect = 6e-40
Identities = 81/177 (45%), Positives = 118/177 (66%), Gaps = 1/177 (0%)
Query: 2 GALVSKFWFMLFPG-KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
G + S + L+ K+ +I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE L YKN
Sbjct: 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
++ WD+GGQ +R W YY T AVI V+DSTD+ R+S EL +L E+LQ +
Sbjct: 61 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+L+FANKQD A++ +E++ L+L +K+ W I A SA+ G+G+ +GL+W+ +
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 128 bits (323), Expect = 9e-39
Identities = 106/176 (60%), Positives = 135/176 (76%), Gaps = 1/176 (0%)
Query: 2 GALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNI 61
G L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
RF WD+GGQE LR+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ + +
Sbjct: 60 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119
Query: 122 LIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
LIFANKQD+K+ MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 120 bits (301), Expect = 2e-35
Identities = 71/164 (43%), Positives = 103/164 (62%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQER 73
P ++ +I+++GLDNAGKTT L +L ++ PT G N++ + + + WD+GGQ +
Sbjct: 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 72
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
+R W +Y+ T +I VIDS DR R EL LL E L VLIFANKQDL A
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+EI + L+LH+I++ W IQ+CSALTG+G+ DG+ W+ + V
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 113 bits (284), Expect = 4e-33
Identities = 86/159 (54%), Positives = 122/159 (76%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F WDVGGQ+++R W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
Y++ T +I V+DS DR R++ ++EL R+L ++L+ +V+L+FANKQDL +AM AE
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
ITD L LHS+++ +W+IQA A +GDGL +GL+W+S ++
Sbjct: 122 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 112 bits (281), Expect = 1e-32
Identities = 70/165 (42%), Positives = 108/165 (65%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ +++++GLDNAGKTT L K + +V T PT+G N++ L ++ + WDVGGQ+ LR
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
+ W Y+ T +I V+DS DR R+ + EL LL E L + +LIFANKQDL A++
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
I +AL L SI++H W IQ CSA+TG+ L+ G++W+ ++ +
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 109 bits (273), Expect = 2e-31
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
K++ +GLDNAGKTT L+ L + T PT EEL NI+F +D+GG + R W
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
Y+ + ++ ++D+ D R + EL L +L+ +I NK D +A++ AE
Sbjct: 62 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121
Query: 139 ITDALSLHSI-------KNHDWHIQACSALTGDGLVDGLEWISQ 175
+ AL L + + CS + +G ++ +W+SQ
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 109 bits (272), Expect = 4e-31
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 12/184 (6%)
Query: 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEA 65
S F+ K K++ +GLDNAGKTT L+ L + PT+ EEL + F
Sbjct: 2 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT 61
Query: 66 WDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA 125
+D+GG + R W Y + ++ ++D D R+ K+EL L+ E + + +LI
Sbjct: 62 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121
Query: 126 NKQDLKDAMTPAEITDALSLH------------SIKNHDWHIQACSALTGDGLVDGLEWI 173
NK D +A++ + + L+ + + CS L G +G W+
Sbjct: 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181
Query: 174 SQRV 177
+Q +
Sbjct: 182 AQYI 185
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 99.4 bits (246), Expect = 2e-27
Identities = 77/162 (47%), Positives = 114/162 (70%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ +I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE + YKN++F+ WD+GG +R
Sbjct: 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
W YY T AVI V+DS DR RI I K EL +L E+L+ +++++FANKQD++ AMT
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+E+ ++L L ++K+ W I SA G GL + +EW+ + +
Sbjct: 124 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 94.8 bits (234), Expect = 1e-25
Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 1/163 (0%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKNIRFEAWDVGGQERL 74
++ ++ +VGL +GKTT + + G+ PTVG N+ ++ N+ + WD+GGQ R
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134
R+ W Y RG A++ ++D+ D+ +I K+EL LL LQ VL+ NK+DL A+
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 135 TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
E+ + ++L +I++ + + S D + L+W+ Q
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.4 bits (234), Expect = 2e-25
Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY----KNIRFEAWDVGGQE 72
+K++++G GKT L++ +T T+G + + K I+ + WD GQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R RT YYRG +++V D T+ +++ + + H +++
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
E ++ SA + + +++ + K
Sbjct: 127 RQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.9 bits (230), Expect = 7e-25
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
KI+++G GK+ L + + + T+G + + ++ K ++ + WD GQE
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R RT YYRG +I+V D TD + F+ + + +L+ NK D++
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ A+ +A K SA D + + +++ +
Sbjct: 122 RVVTADQGEA----LAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.1 bits (225), Expect = 4e-24
Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHP-----TVGSNVEELVYKNIRFEAWDVGGQE 72
KI+I+G GK++ L + + + WD GQE
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R RT +YYRG VI+V D T R + + L L + V ++ NK D
Sbjct: 68 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID--- 124
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
E+ L + H SA T DG+ E + +++
Sbjct: 125 -KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.4 bits (221), Expect = 5e-23
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++++++G +GK+T + ++ + VV T G + + F +DVGGQ R
Sbjct: 5 ATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDER 61
Query: 76 TSWATYYRGTHAVIVVIDST----------DRARISIMKDELFRLLGHEDLQHSVVLIFA 125
W + A+I V+ S+ R+ + + + L+ V++F
Sbjct: 62 RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFL 121
Query: 126 NKQDLKDA 133
NKQDL
Sbjct: 122 NKQDLLAE 129
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.0 bits (217), Expect = 9e-23
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + + T+G + + EL K ++ + WD GQE
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R RT ++YYRG+H +I+V D TD+ + +K L + + +L+
Sbjct: 67 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ ++ + SAL + D +++++
Sbjct: 127 RVVEYDVAK----EFADANKMPFLETSALDSTNVEDAFLTMARQI 167
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.5 bits (213), Expect = 2e-22
Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT------VGSNVEELVYKNIRFEAWDVGGQ 71
+K+++VG GKT L + G + + V ++ ++ + WD GQ
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
ER R+ YYR HA++++ D T++A ++ L + + +++L+
Sbjct: 67 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ + E + L+ K + SA TG + I++ +
Sbjct: 127 ERVVKREDGEKLA----KEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 85.7 bits (211), Expect = 5e-22
Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE-----LVYKNIRFEAWDVGGQE 72
+KI+I+G + GKT+ L++ + + K I+ + WD GQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R RT YYRG I++ D T+ + ++D ++ + V+L+ +
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ +E + + SA + E + +
Sbjct: 126 RVVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.0 bits (209), Expect = 1e-21
Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT-----VGSNVEELVYKNIRFEAWDVGGQE 72
+K +++G GK+ L++ + GS + + K ++ + WD GQE
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R+ +YYRG ++V D T R + + + L ++L K D
Sbjct: 66 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ ++ SALTG+ + + ++++
Sbjct: 126 REVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKI 166
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.4 bits (205), Expect = 5e-21
Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 18/175 (10%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG--------------SNVEELVYKNIR 62
K++ +G GKTT LY+ + TVG N +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 63 FEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL 122
+ WD GQER R+ ++R +++ D T + +++ + +L + ++ ++
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 123 IFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ NK DL D E + + SA TG + +E + +
Sbjct: 126 LIGNKADLPDQREVNERQ---ARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.4 bits (205), Expect = 6e-21
Identities = 27/191 (14%), Positives = 69/191 (36%), Gaps = 34/191 (17%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ K++++G +GK+T + ++ + + PT G +++ F DVGGQ R
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIM----------KDELFRLLGHEDLQHSVVLIFA 125
W + +++ ++ ++ ++ + K ++ + Q+S V++F
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 126 NKQDLKDAMTPAEITD-----------------------ALSLHSIKNHDWHIQACSALT 162
NK+DL + + L+ + + A
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 163 GDGLVDGLEWI 173
+ + +
Sbjct: 180 TENIRFVFAAV 190
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.8 bits (203), Expect = 1e-20
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 17/177 (9%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDV----GGQERL 74
++ VGL ++GKT +L G+ T ++ + N R + + G +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 75 RTSWATYYRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDL--QHSVVLIFANKQDLK 131
+ AV+ V+DS R + + + L+++L +LI NKQD+
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 132 DAMTPAEITDALSLHSIKNHDWH----------IQACSALTGDGLVDGLEWISQRVT 178
A + I L A + L G + +V
Sbjct: 122 MAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVE 178
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (196), Expect = 6e-20
Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 9/169 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT-----VGSNVEELVYKNIRFEAWDVGGQE 72
+KI+++G GKT + + G E+ + ++ + WD GQE
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R+ +YYR +A+I+ D T + + L + + + VL+ +
Sbjct: 66 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181
+ + + D + SA D + ++ R+ +A
Sbjct: 126 REVSQQRAE----EFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 170
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.8 bits (193), Expect = 1e-19
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTV-----GSNVEELVYKNIRFEAWDVGGQE 72
+K II+G GK+ L++ + + P G+ + E+ + I+ + WD GQE
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R +YYRG ++V D T R+ + + L + ++V+++ NK D +
Sbjct: 65 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIILIGNKAD-LE 122
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
A +A + + SA TG+ + D ++++
Sbjct: 123 AQRDVTYEEAKQFA--EENGLLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.1 bits (186), Expect = 2e-18
Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTV-----GSNVEELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + E + + ++ K I+ + WD GQE
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R + YYRG ++V D ++ L L H D + V+++ NK D
Sbjct: 65 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKS---D 120
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ + + ++ SAL + + + I +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.9 bits (185), Expect = 3e-18
Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 6/164 (3%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTV-----GSNVEELVYKNIRFEAWDVGGQER 73
K++++G GK++ + + + + + ++FE WD GQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
+ YYR A +VV D T + + L + ++ + NK D+
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQE 123
Query: 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
++ + SA TG+ + D I +++
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.1 bits (186), Expect = 4e-18
Identities = 29/150 (19%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
+ KI+++G +GK+T L ++ + PT G + + KN+ F+ DVGGQ R
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58
Query: 76 TSWATYYRGTHAVIVVIDSTD----------RARISIMKDELFRLLGHEDLQHSVVLIFA 125
W + +++ ++ S++ R++ + ++ + + +++F
Sbjct: 59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118
Query: 126 NKQ-DLKDAMTPAEITDALSLHSIKNHDWH 154
NK L++ + I D H
Sbjct: 119 NKTDLLEEKVQVVSIKDYFLEFEGDPHCLR 148
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.3 bits (176), Expect = 4e-17
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY----KNIRFEAWDVGGQE 72
+K++ +G + GKT+ + + T+ T+G + + IR + WD GQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R+ +Y R + A +VV D T+ + + ++L+ NK DL D
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTDLAD 119
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
+++ K + SA G + ++ + G
Sbjct: 120 KR---QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.6 bits (174), Expect = 1e-16
Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT-----VGSNVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ + + L ++FE WD GQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + L + V+ + NK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLAN 125
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ ++ SA T + + I++++
Sbjct: 126 KRAV---DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.5 bits (174), Expect = 1e-16
Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 7/166 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELV----YKNIRFEAWDVGGQ 71
++YK++++G GK+ + G + + + E D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E+ + Y + I+V ++ +K +++ + + V++ NK DL+
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ ++ +L + SA + + + I +++
Sbjct: 122 SEREVSS-SEGRALA--EEWGCPFMETSAKSKTMVDELFAEIVRQM 164
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.1 bits (173), Expect = 3e-16
Identities = 23/138 (16%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ K++++G +GK+T + ++ + G +K++ F+ +DVGGQ R
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMK----------DELFRLLGHEDLQHSVVLIFA 125
W + G A+I + +D + + ++ + +++F
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 126 N-KQDLKDAMTPAEITDA 142
N K ++ + + +T
Sbjct: 117 NKKDLFEEKIKKSPLTIC 134
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.8 bits (167), Expect = 1e-15
Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGE-----VVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K II+G GK+ L + +T G+ + + K I+ + WD GQE
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R+ +YYRG ++V D T R + + L H ++LI D
Sbjct: 64 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK----SD 119
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ ++ + H SA T + + ++ +
Sbjct: 120 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (166), Expect = 1e-15
Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 9/165 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-----KNIRFEAWDVGGQE 72
+K++++G GKT+ + + + H T K + WD GQE
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R YYR ++ I+V D TD +K+ + L + + ++ K+
Sbjct: 64 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ ++ + ++ SA G+ + + +R+
Sbjct: 124 RHVSIQEAESYA----ESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.1 bits (160), Expect = 1e-14
Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 13/173 (7%)
Query: 15 GKD--YKIIIVGLDNAGKTTTLYKLHLGE-----VVTTHPTVGSNVEELVYKNIRFEAWD 67
GK +K+I++G GK++ + + + T + E+ + + WD
Sbjct: 2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 61
Query: 68 VGGQERLRTSWATYYRGTHAVIV---VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124
GQER R+ +YRG+ ++ V DS +S K E ++ + +I
Sbjct: 62 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 121
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
NK D+ + E A N D+ SA + E +RV
Sbjct: 122 GNKIDISERQVSTEEAQAWC---RDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 62.6 bits (151), Expect = 2e-13
Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 7/164 (4%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQER 73
+K+I+VG GK+ + E V + ++ + ++ + D GQE
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
Y+R + V T+ + D ++L ++ ++ L+ NK DL+D
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ + + + SA T + + + +
Sbjct: 125 RQVSVEEAK---NRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.5 bits (153), Expect = 2e-13
Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 14/167 (8%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79
III G N+GKT+ L L V T + + Y D G +LR +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLS 64
Query: 80 TYY-----RGTHAVIVVIDSTDRARISIMKDELFRL---LGHEDLQHSVVLIFANKQDLK 131
Y + +V + D +++ + L + +LI NK +L
Sbjct: 65 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 124
Query: 132 DAMTPAEITDALS-----LHSIKNHDWHIQACSALTGDGLVDGLEWI 173
A P++I DAL + + + D + L+ +
Sbjct: 125 TARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 171
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.0 bits (149), Expect = 4e-13
Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 7/168 (4%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVG 69
P + +K+++VG GK+ + V+ + + + R + D
Sbjct: 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTA 62
Query: 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129
GQE Y R H ++V DR + + ++L +D V++ NK D
Sbjct: 63 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122
Query: 130 LKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
L+ ++ + + +H SA + + E + + V
Sbjct: 123 LESQR---QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.6 bits (143), Expect = 3e-12
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 9/167 (5%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP-----TVGSNVEELVYKNIRFEAWDVGG 70
++ K+ ++G GK++ +++ + + + + +F WD G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
ER R YYRG+ A I+V D T S +K+ + L H V +
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 122
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ + SA + + IS+R+
Sbjct: 123 DVREVMERDAKDYA----DSIHAIFVETSAKNAININELFIEISRRI 165
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (141), Expect = 5e-12
Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 8/166 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT----VGSNVEELVYKNIRFEAWDVGGQ 71
+YK+++VG GK+ +L V + + + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E Y R + V + + ++ +D +++ NK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ +++ SA T G+ D + + +
Sbjct: 122 ARTVESRQAQD----LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.6 bits (140), Expect = 8e-12
Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 10/164 (6%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-----PTVGSNVEELVYKNIRFEAWDVGGQER 73
K+++VG GK++ + + G + ++ +++R WD GQE
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
YYRG A ++V +TDR + +++ + ++ D
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKI-----DL 118
Query: 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ + I + + K S + + ++++++
Sbjct: 119 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.9 bits (141), Expect = 8e-12
Identities = 34/181 (18%), Positives = 55/181 (30%), Gaps = 15/181 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG----SNVEELVYKNIRFEAWDVGGQ 71
+ K ++VG GKT L + S + K + WD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E Y T ++ A ++ + + + ++ +++ K DL+
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 122
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQA----------CSALTGDGLVDGLEWISQRVTGKA 181
D E L I A CSALT GL + + V
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182
Query: 182 P 182
P
Sbjct: 183 P 183
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.8 bits (138), Expect = 2e-11
Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 5/165 (3%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY----KNIRFEAWDVGGQE 72
K+II+G GKT+ + + + + T+G++ + + + WD GQE
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R ++ +YRG ++V D T + L + F + D
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
T ++ SA + + I++
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (137), Expect = 2e-11
Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 6/166 (3%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELV---YKNIRFEAWDVGGQ 71
++YK++++G GK+ + G V + PT+ + + V + E D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E+ Y + +V T ++ + ++D ++L +D + +++ NK DL+
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
D + N + SA + + + + +++
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFL--ESSAKSKINVNEIFYDLVRQI 165
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.3 bits (137), Expect = 2e-11
Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 9/152 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDV------GGQ 71
+KII++G N GKT Y+ G +I E + G +
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
++ YYR HAV+ V D T+ A + + H ++ NK DL+
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTG 163
A+ A H + SA
Sbjct: 123 SAIQVPT-DLAQKFA--DTHSMPLFETSAKNP 151
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 8e-11
Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 12/169 (7%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-----PTVGSNVEELVYKNIRFEAWDVGGQ 71
+K+++VG GKTT + + GE + V V I+F WD GQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E+ YY I++ D T R + + L+ ++ +++ NK D+K
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK 120
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
D A+ + + SA + W+++++ G
Sbjct: 121 DRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 1e-10
Identities = 35/176 (19%), Positives = 56/176 (31%), Gaps = 15/176 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQ 71
+ K ++VG GKT L + + + PTV N V + +D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E Y T +V + +K++ + H + L+ + DL+
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLR 120
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQA----------CSALTGDGLVDGLEWISQRV 177
D + E I A CSALT GL + +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.1 bits (126), Expect = 8e-10
Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 10/169 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT------VGSNVEELVYKNIRFEAWDVGGQ 71
K+II+G GKT+ +++ + + + V K + WD GQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRAR---ISIMKDELFRLLGHEDLQHSVVLIFANKQ 128
ER ++ +YRG ++V D T+ + I +DE + +I NK
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 129 DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
D +++ A + D + SA + E I++
Sbjct: 123 DAEESKKIVSEKSAQE-LAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 1e-09
Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 15/174 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN---VEELVYKNIRFEAWDVGGQER 73
K++IVG GKT L + + PTV N E+ K + WD G E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
Y T +++ + + ++ + H ++L+ NK+DL++
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG-NKKDLRND 121
Query: 134 MTPAEITDALSLHSIKNHDWHIQA----------CSALTGDGLVDGLEWISQRV 177
+ +K + A CSA T DG+ + E ++
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 2e-09
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 7/166 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG----SNVEELVYKNIRFEAWDVGGQ 71
+ Y++++VG GK+ + VT + + + + R + D GQ
Sbjct: 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQ 63
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E Y R ++V TDR + ++L +D +++ NK DL
Sbjct: 64 EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
T + SA + + + +
Sbjct: 124 HQRQV---TQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.0 bits (123), Expect = 2e-09
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 8/165 (4%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQER 73
YK+++VG GK+ + V + + + + D GQE
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 64
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
Y R ++V TD+A + +L +D + +++ ANK DL
Sbjct: 65 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL--- 121
Query: 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL-EWISQRV 177
M ++T ++ SA VD + + +
Sbjct: 122 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 52.0 bits (123), Expect = 2e-09
Identities = 39/177 (22%), Positives = 61/177 (34%), Gaps = 22/177 (12%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEV-------VTTHPTVGSNVEELVYKNIRFEAWDVGG-- 70
+ +VG NAGK++ L + T P +G V + RF D+ G
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE---VSEEERFTLADIPGII 60
Query: 71 -----QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA 125
+ L + + T ++ V+D+ D ++ L L+
Sbjct: 61 EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120
Query: 126 NKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182
NK DL + + DAL + SALTG GL E + V P
Sbjct: 121 NKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAGLPALKEALHALVRSTPP 172
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 1e-08
Identities = 35/174 (20%), Positives = 53/174 (30%), Gaps = 15/174 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQER 73
K ++VG GKT L + PTV + V K +D GQE
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
Y T ++ + A +K+E L + L+ + DL+D
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 128
Query: 134 MTPAEITDALSLHSIKNHDWHIQA----------CSALTGDGLVDGLEWISQRV 177
+ + I A CSALT GL + +
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 2e-08
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 6/161 (3%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGE----VVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
DY++ + G GK++ + + G + T V + D G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
+ HA I+V T R + +K ++ + S+ ++ + +
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173
+ ++A +L + SA + + + +
Sbjct: 122 PSREVQSSEAEALA--RTWKCAFMETSAKLNHNVKELFQEL 160
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 3e-08
Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 7/162 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELV----YKNIRFEAWDVGGQ 71
K KI I+G + GK++ + G+ V ++ N + + + D GQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
+ TY + I+V T ++K +LL +++ NK+DL
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173
+ ++ + SA VD I
Sbjct: 123 MERVISYEEGK---ALAESWNAAFLESSAKENQTAVDVFRRI 161
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.7 bits (112), Expect = 7e-08
Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 15/164 (9%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQERL 74
KI++VG GKT L+ + PTV N + I WD G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134
Y + AV++ D + + + + ++ E ++ +L+ K DL+ +
Sbjct: 64 DNVRPLSYPDSDAVLICFDISRPETLDSVLKK-WKGEIQEFCPNTKMLLVGCKSDLRTDV 122
Query: 135 TPAEITDALSLHSIKNHDWHIQA----------CSALTGDGLVD 168
+ + A CSAL + V
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR 166
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 8e-08
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 7/165 (4%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKNIRFEAWDVGG--QER 73
+ K+ I G GK+ + + + + PT+ S + + ++ +
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
+ R ++V D TDR + L + ++ +++ NK DL +
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121
Query: 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL-EWISQRV 177
+ CSA TG+G + + + + V
Sbjct: 122 RQV---STEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 1e-07
Identities = 14/160 (8%), Positives = 38/160 (23%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77
YK++++G GK+ E G + + + + V
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
Query: 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA 137
+ + + + + + + D +
Sbjct: 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121
Query: 138 EITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
E++ D SA + E + +++
Sbjct: 122 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 43.8 bits (102), Expect = 2e-06
Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 8/161 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG----SNVEELVYKNIRFEAWDVGGQERL 74
+++IVG N GK+T L +L + G EE+V + I F D G
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134
+ + ++A I + + L ED + + + + +
Sbjct: 62 TNDLVER----LGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKV 117
Query: 135 TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
E + + + D H+ SAL G+GL E I +
Sbjct: 118 DVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYR 158
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 43.1 bits (100), Expect = 4e-06
Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 29/183 (15%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79
II G N GK+T +Y+L G+ V G + + + + D+ G +
Sbjct: 3 IIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 80 TYYRGTH------------------------AVIVVIDSTDRARISIMKDELFRLLGHED 115
A +I ++ + E ++ L D
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 116 LQHSVVLIFANKQDLKDAMTPAEITDALSL-HSIKNHDWHIQACSALTGDGLVDGLEWIS 174
+ ++ NK D + A + D SA GD + I
Sbjct: 122 IP---TIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178
Query: 175 QRV 177
+ +
Sbjct: 179 EVI 181
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 42.4 bits (98), Expect = 5e-06
Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 4/162 (2%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79
+ IVG N GK+T L L +V P + + L V
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---- 135
V D + + D ++L + K +
Sbjct: 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+A+ + + + SAL + + + +
Sbjct: 128 AKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 7e-06
Identities = 11/162 (6%), Positives = 47/162 (29%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
+ ++ ++G +GK++ +++ G T ++ + + + + +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
+ + + + ++ + + L E + + + + +
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
A G + + ++Q+V
Sbjct: 124 RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 39.5 bits (91), Expect = 6e-05
Identities = 21/171 (12%), Positives = 46/171 (26%), Gaps = 16/171 (9%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVV-------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+ +VG + GK+T L + + T P +G F D+ G
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVE---TDDGRSFVMADLPGLI 60
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
I + + + + +
Sbjct: 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ 120
Query: 133 AM------TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+ P + + D+ + SA+T +GL + L ++ ++
Sbjct: 121 IIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 171
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.4 bits (90), Expect = 6e-05
Identities = 24/161 (14%), Positives = 44/161 (27%), Gaps = 3/161 (1%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79
++IVG N GK+T KL + G + + +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM---TP 136
V ++ A + + + R + ED + L + + A
Sbjct: 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122
Query: 137 AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
E + SA L LE I +++
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (87), Expect = 1e-04
Identities = 22/158 (13%), Positives = 41/158 (25%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
K++I G NAGK++ L L E G+ + L
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
+ + R+ M D + + +
Sbjct: 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176
+L + + + SA TG+G+ + Q
Sbjct: 123 DITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQS 160
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 1e-04
Identities = 17/166 (10%), Positives = 42/166 (25%), Gaps = 8/166 (4%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGE------VVTTHPTVGSNVEELVYKNIRFEAWDVGGQ 71
Y+++++G GK+T + ++ D+
Sbjct: 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
+ + +++ S EL L + +I +
Sbjct: 64 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+++ D SA + + E I ++V
Sbjct: 124 VRCREVSVSE--GRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 38.2 bits (87), Expect = 2e-04
Identities = 19/169 (11%), Positives = 50/169 (29%), Gaps = 10/169 (5%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVV-----TTHPTVGSNVEELVYKNIRFEAWDVGGQER 73
+I + G N GK++ + L + + T N + + + G +
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIM-----KDELFRLLGHEDLQHSVVLIFANKQ 128
++ + R I + + ++ ++ V++ A K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 129 DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
D + + + + + S+ T G + I + +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (87), Expect = 2e-04
Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 11/175 (6%)
Query: 12 LFPGKDYKIIIVGLDNAGKTTTLYKL-----------HLGEVVTTHPTVGSNVEELVYKN 60
L ++ G NAGK++ L L G + ++ + LV
Sbjct: 11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLP 70
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
A +R Y + + R + + + D +V
Sbjct: 71 GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV 130
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
+++ L A++ N D ++ S+L G+ + +
Sbjct: 131 LVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 185
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 36.2 bits (82), Expect = 0.001
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 13/170 (7%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS----NVEELVYKNIRFEAWDVGGQERL 74
K+ IVG N GK+T + E P G+ +E+ ++ D G R
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 69
Query: 75 RTSWATYYRGTHAVIV--------VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
V V+ A I + + E + V++F
Sbjct: 70 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNK 129
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHDWH-IQACSALTGDGLVDGLEWISQ 175
+ + L + D+ + SA G + ++ ++
Sbjct: 130 WDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 35.9 bits (81), Expect = 0.001
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 9/164 (5%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG---SNVEELVYKNIRFEAWDVGGQERLRT 76
I IVG N GK+T L KL ++ T + + + + +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFR----LLGHEDLQHSVVLIFANKQDLKD 132
A A I + + +L + V++ NK D
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176
A++ L + + + I SA TG + + +
Sbjct: 128 EK--ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKH 169
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 183 | |||
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.98 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.97 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.95 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.95 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.94 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.94 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.94 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.93 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.93 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.93 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.93 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.92 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.91 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.91 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.91 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.9 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.88 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.87 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.87 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.86 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.85 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.84 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.83 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.83 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.8 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.67 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.64 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.62 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.6 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.57 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.55 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.21 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.2 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.18 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.16 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.16 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.01 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.62 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.57 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.5 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.46 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.46 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.43 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.36 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.32 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.28 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.18 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.16 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 98.02 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.99 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.93 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.9 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.9 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.89 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.86 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.84 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.83 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.82 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.76 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.74 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.73 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.73 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.72 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.7 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.69 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.68 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.65 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.64 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.64 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.63 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.63 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.61 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.61 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.61 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.6 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.59 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.59 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.59 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.58 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.57 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.56 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.54 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.53 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.53 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.53 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.53 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.52 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.49 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.49 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.48 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.48 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.48 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.47 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.47 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.45 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.45 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.44 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.43 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 97.43 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.41 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.39 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.39 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.39 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.38 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 97.37 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.36 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.36 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.35 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.35 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.35 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.33 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.31 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.3 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 97.3 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.3 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.3 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.29 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.27 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.27 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.26 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.25 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 97.24 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.2 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.16 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 97.16 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.14 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 97.14 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.13 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 97.07 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.06 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.98 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.95 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.94 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.91 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.91 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.9 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.89 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.87 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.82 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.78 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.68 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.65 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 96.65 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.63 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.49 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.46 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.42 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.37 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.34 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.33 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.32 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 96.24 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.23 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.21 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.19 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.17 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 96.13 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 96.08 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.07 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.06 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.06 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.05 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.03 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.98 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.98 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.97 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.93 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.9 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.85 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.85 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.75 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.73 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.71 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.7 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 95.67 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.59 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.58 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.58 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.54 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.39 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.32 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.23 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.16 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.05 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.96 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.92 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.92 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.91 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.59 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.54 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.47 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 94.28 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.65 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 93.5 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 93.37 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.28 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.76 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 92.04 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 91.78 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 91.67 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 91.46 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 91.31 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 91.18 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 91.15 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.93 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 90.69 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 90.45 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.18 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 88.97 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.56 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.28 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 86.59 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 86.03 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.0 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 85.3 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 84.58 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 84.19 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 83.44 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 82.19 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 80.44 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 80.28 |
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=9.2e-40 Score=216.29 Aligned_cols=179 Identities=45% Similarity=0.820 Sum_probs=158.5
Q ss_pred chhhHHHhhh-cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 2 GALVSKFWFM-LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 2 ~~~~~~~~~~-~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
|+.+++++.. ...++.+||+++|++|||||||++++.++.+....+|.+........+...+.+||++|++.+...+..
T Consensus 1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (182)
T d1moza_ 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 80 (182)
T ss_dssp CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence 5666777754 467889999999999999999999999998888889999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++.++++++|+|++++.++.....++...+......+.|+++|+||+|+.+.....++.+.++........+++++|||
T Consensus 81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA 160 (182)
T d1moza_ 81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 160 (182)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 99999999999999999999999999999888777788999999999999887788888888877766777889999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|+|++++|+||++.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 161 IKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp GGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999998765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=1.7e-38 Score=208.49 Aligned_cols=168 Identities=48% Similarity=0.923 Sum_probs=154.0
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..+++++.+||+++|++|||||||++++.++.+....+|.+............+.+||+||+..+...+..+++++++++
T Consensus 5 ~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii 84 (173)
T d1e0sa_ 5 SKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 84 (173)
T ss_dssp HHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred hhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence 33446889999999999999999999999999888888999998888899999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+|+++.+++..+..++...+......+.|+++++||.|+.+.....++.+.++.......++++++|||++|+||+|+
T Consensus 85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~ 164 (173)
T d1e0sa_ 85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 164 (173)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence 99999999999999999999988766678999999999999888888888888887777777889999999999999999
Q ss_pred HHHHHHhh
Q 030113 170 LEWISQRV 177 (183)
Q Consensus 170 ~~~i~~~~ 177 (183)
|+||.+++
T Consensus 165 ~~~l~~~~ 172 (173)
T d1e0sa_ 165 LTWLTSNY 172 (173)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999876
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=4.2e-38 Score=205.19 Aligned_cols=165 Identities=42% Similarity=0.781 Sum_probs=150.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
+.+||+++|++|||||||+++|.+..+....+|.+.....+..++..+.+||+||++.+...+..+++.++++++|+|++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 80 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 80 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence 46899999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
+..++.....++...+......+.|+++|+||+|+.+.....+....+.........+++++|||++|+|++++|+||.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 160 (165)
T d1ksha_ 81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160 (165)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999988887776778999999999999887777777777766655667889999999999999999999999
Q ss_pred hhhcc
Q 030113 176 RVTGK 180 (183)
Q Consensus 176 ~~~~~ 180 (183)
++.++
T Consensus 161 ~i~~r 165 (165)
T d1ksha_ 161 DISSR 165 (165)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 98764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=2.8e-38 Score=208.06 Aligned_cols=166 Identities=43% Similarity=0.785 Sum_probs=151.6
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
..+++.+||+++|++|||||||++++.++.+....++.+++...+...+..+.+||++|++.+...+..+++.+|++++|
T Consensus 11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 90 (176)
T d1fzqa_ 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (176)
T ss_dssp SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence 34567899999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
||+++..++.....++..........++|+++|+||+|+.+........+.++........+++++|||++|+|++++|+
T Consensus 91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~ 170 (176)
T d1fzqa_ 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170 (176)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999988877777899999999999988877778877777666666788999999999999999999
Q ss_pred HHHHhh
Q 030113 172 WISQRV 177 (183)
Q Consensus 172 ~i~~~~ 177 (183)
||++++
T Consensus 171 ~l~~~i 176 (176)
T d1fzqa_ 171 WVCKNV 176 (176)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 999864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=9.3e-38 Score=203.31 Aligned_cols=162 Identities=31% Similarity=0.585 Sum_probs=149.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
+++||+++|++|+|||||++++.++.+.. +.+|.+.....+..+...+.+||+||++.+...+..++..++++++|||+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence 36899999999999999999999888755 66899999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
++..++.....++..+.......+.|+++|+||.|+.+.....++.+.++........++++++||++|+|++++|+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~ 160 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence 99999999999999998887778899999999999988778888888888777777888999999999999999999999
Q ss_pred Hhh
Q 030113 175 QRV 177 (183)
Q Consensus 175 ~~~ 177 (183)
+++
T Consensus 161 ~~~ 163 (164)
T d1zd9a1 161 QHS 163 (164)
T ss_dssp HTC
T ss_pred Hcc
Confidence 875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-37 Score=200.36 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
+||+++|++|||||||++++.+..+....++.+..+. .+.. ....+.+||++|++.+...+..+++++|++++|||+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 81 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 81 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence 7999999999999999999998877666565554443 3333 357889999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
+++.++..+..|+..+.......+.|+++|+||+|+.+... ..+..+. ....+++|++|||++|.||+++|++
T Consensus 82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~~f~~ 156 (168)
T d2gjsa1 82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC-----AVVFDCKFIETSAALHHNVQALFEG 156 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHH-----HHhcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999998887665556789999999999865422 2222221 1233567999999999999999999
Q ss_pred HHHhhhccC
Q 030113 173 ISQRVTGKA 181 (183)
Q Consensus 173 i~~~~~~~~ 181 (183)
+++.+..++
T Consensus 157 l~~~i~~~~ 165 (168)
T d2gjsa1 157 VVRQIRLRR 165 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=1.2e-34 Score=190.71 Aligned_cols=176 Identities=60% Similarity=1.039 Sum_probs=154.0
Q ss_pred chhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhh
Q 030113 2 GALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATY 81 (183)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (183)
|-|+++++ .++.++.+||+|+|.+|||||||++++.++.+....++.+............+.+||+++++.....+..+
T Consensus 1 ~~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 79 (177)
T d1zj6a1 1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 79 (177)
T ss_dssp CHHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred ChhHHHHH-HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhh
Confidence 45777777 55668889999999999999999999999999888888888888888899999999999999999999999
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+..++++++|+|.++..++.....++............|+++|+||.|+.......+..+.+........+++++++||+
T Consensus 80 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 159 (177)
T d1zj6a1 80 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 159 (177)
T ss_dssp HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred hccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCC
Confidence 99999999999999999999888888888777767789999999999998887888888888777667788899999999
Q ss_pred cCCCHHHHHHHHHHhhh
Q 030113 162 TGDGLVDGLEWISQRVT 178 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~ 178 (183)
+|+|++++++||.+++.
T Consensus 160 tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 160 TGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TTBTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998863
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-36 Score=195.28 Aligned_cols=158 Identities=24% Similarity=0.397 Sum_probs=128.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|||||||++++.++.+.. +.+|.+..+..... ....+.+||++|+..+...+..+++++|++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 5899999999999999999999988765 55777776655444 458999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
||+++++||..+..|+....... .+.|+++|+||+|+.......+.. ......+++|++|||++|.||+++|+
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSH-----HHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876543 579999999999987654433222 22234567899999999999999999
Q ss_pred HHHHhhhccC
Q 030113 172 WISQRVTGKA 181 (183)
Q Consensus 172 ~i~~~~~~~~ 181 (183)
+|++.+.+++
T Consensus 156 ~l~~~l~~~~ 165 (170)
T d1i2ma_ 156 WLARKLIGDP 165 (170)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHHccCC
Confidence 9999988654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-36 Score=198.98 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=131.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccce--eEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN--VEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.+.+.+||+++|++|||||||++++.++.+.....+.... ...+..+ .+.+.+||++|++++...+..+++++|++
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 81 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 81 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence 4678899999999999999999999988876643332322 2233333 47889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|||++++.||..+..|+..+.......+.|+++|+||+|+.... ...+..... ...+++|++|||++|.||
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~g~gv 156 (173)
T d2fn4a1 82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVAYFEASAKLRLNV 156 (173)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSH
T ss_pred eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHH-----HhcCCEEEEEeCCCCcCH
Confidence 9999999999999999999888765445679999999999986432 222222222 224568999999999999
Q ss_pred HHHHHHHHHhhhccCC
Q 030113 167 VDGLEWISQRVTGKAP 182 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~~ 182 (183)
+++|+++++.+.+++.
T Consensus 157 ~e~f~~l~~~i~k~~~ 172 (173)
T d2fn4a1 157 DEAFEQLVRAVRKYQE 172 (173)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=4.5e-34 Score=184.89 Aligned_cols=160 Identities=54% Similarity=0.986 Sum_probs=144.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+||+++|++|||||||++++.++++....++............+.+.+||++|...+...+..++..++++++|+|.+++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~ 80 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence 58999999999999999999998887777666666777778899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
.++.....++............|+++++||.|+.+.....++.........+..++++++|||++|+|++++|+||+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 99999999999998887778899999999999988878888887777666677788999999999999999999999875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2e-35 Score=193.10 Aligned_cols=159 Identities=25% Similarity=0.379 Sum_probs=126.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|||||||++++.++.+.. ..++.+.+... +.. ....+.+|||||++++...+..+++++|++|+
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il 83 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 83 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 35899999999999999999999887654 44555544433 333 34789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||+++++++.....|+...... .....|+++++||.|+.... ..++..+.. +..++++++|||++|.||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~e 157 (169)
T d3raba_ 84 MYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVKQ 157 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHH-----HHcCCEEEEecCCCCcCHHH
Confidence 99999999999998888776443 34679999999999986532 223322221 22346899999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|+++++.+.++
T Consensus 158 ~f~~l~~~i~ek 169 (169)
T d3raba_ 158 TFERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-35 Score=189.86 Aligned_cols=160 Identities=16% Similarity=0.245 Sum_probs=129.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEE-EE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEEL-VY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.+||+++|++|||||||++++..+.+.. +.++.+..+... .. ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence 67899999999999999999999998876 455655444322 22 457899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||+++++||+.+..|+..+.......+.|+++|+||+|+..... .++..+... ...+.++++|||++|.||+++
T Consensus 82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e~ 157 (167)
T d1c1ya_ 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHHH
Confidence 99999999999999999887655556799999999999865432 222222221 124568999999999999999
Q ss_pred HHHHHHhhhc
Q 030113 170 LEWISQRVTG 179 (183)
Q Consensus 170 ~~~i~~~~~~ 179 (183)
|+++++.+.+
T Consensus 158 F~~l~~~i~k 167 (167)
T d1c1ya_ 158 FYDLVRQINR 167 (167)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 9999998753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-35 Score=192.78 Aligned_cols=161 Identities=18% Similarity=0.199 Sum_probs=129.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.+||+++|++|||||||++++.++.+.+ +.++.+..+.. +.. ....+.+||++|++.+...+..+++++|++++
T Consensus 2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll 81 (169)
T d1x1ra1 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 81 (169)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence 457999999999999999999999888765 44555544322 233 45788999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCC-CHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGD-GLV 167 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-gi~ 167 (183)
|||++++.||..+..|+..+.......+.|+++++||+|+.... ..++..+.. +..+++|++|||+++. ||+
T Consensus 82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~-----~~~~~~~~e~Sak~~~~nV~ 156 (169)
T d1x1ra1 82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNVD 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSHH
T ss_pred ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHH-----HHcCCEEEEEcCCCCCcCHH
Confidence 99999999999999999988766555679999999999987653 233332222 2234579999999886 999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+.+++.+.++
T Consensus 157 ~~F~~l~~~i~~~ 169 (169)
T d1x1ra1 157 KTFHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=1.7e-35 Score=193.16 Aligned_cols=160 Identities=19% Similarity=0.272 Sum_probs=126.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+-+||+++|++|||||||++++..+.+.. +.+|.+..+.. +.. ....+.+||++|++++...+..+++++|++++|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence 45899999999999999999999888765 55677655432 333 357889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+.. +..++++++|||++|.||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~e~ 157 (168)
T d1u8za_ 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHH-----HHcCCeEEEEcCCCCcCHHHH
Confidence 9999999999999999888765555789999999999986432 233322222 223567999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|+++++.+..+
T Consensus 158 f~~l~~~i~~r 168 (168)
T d1u8za_ 158 FFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHCc
Confidence 99999988654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-35 Score=194.42 Aligned_cols=161 Identities=16% Similarity=0.214 Sum_probs=127.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEE-EE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEEL-VY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.+||+++|++|||||||+++++++.+.. +.+|.+..+... .. ....+.+||++|++.+...+..+++.+|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 46899999999999999999999988765 457777554332 22 346789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCC-CCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHE-DLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
||+++++++..+..|+..+.... ...+.|+++|+||+|+... ....+..+.. +..++++++|||++|.||++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~-----~~~~~~~~e~Sak~~~~v~e 155 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE 155 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHH-----HHcCCeEEEEcCCCCcCHHH
Confidence 99999999999999887775422 2357899999999998543 2233322221 23356899999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
+|+.|++.+.++.
T Consensus 156 ~f~~l~~~~~~~~ 168 (171)
T d2erxa1 156 LFQELLNLEKRRT 168 (171)
T ss_dssp HHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-34 Score=187.88 Aligned_cols=162 Identities=19% Similarity=0.256 Sum_probs=124.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+.||+|+|++|||||||++++..+.+.. +.+|.+..... ... ....+.+||++|++.+...+..+++++|++++||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 4799999999999999999999988766 44665533321 222 4578999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC---------cc-CCCceEEEEeeccc
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH---------SI-KNHDWHIQACSALT 162 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~S~~~ 162 (183)
|++++.||.+...|+........ ++.|+++|+||+|+.+.....+........ .. .....+|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999999888887766543 579999999999997542221111111110 00 11235799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030113 163 GDGLVDGLEWISQRVTG 179 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~ 179 (183)
|.||+++|+.+++.+.+
T Consensus 161 ~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 161 KDGVREVFEMATRAALQ 177 (177)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 99999999999988753
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-35 Score=192.92 Aligned_cols=156 Identities=21% Similarity=0.332 Sum_probs=126.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|||||||++++.++.+.. +.+|.+........ ....+.+||++|++++...+..++++++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 4799999999999999999999887755 55777755544333 347889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.. ...+..+.. +..++++++|||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSHHH
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHH-----HHcCCEEEEeccCCCcCHHHH
Confidence 99999999999998888876543 468999999999986532 223322222 223568999999999999999
Q ss_pred HHHHHHhhhc
Q 030113 170 LEWISQRVTG 179 (183)
Q Consensus 170 ~~~i~~~~~~ 179 (183)
|++|++.+.+
T Consensus 155 f~~l~~~~lq 164 (164)
T d1z2aa1 155 FKYLAEKHLQ 164 (164)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-34 Score=187.09 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=129.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.+||+++|++|||||||++++.++.+.. +.++.+..+..... ....+.+||++|++.+...+..+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 46899999999999999999999988766 45566544433222 357899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+|++++.+|+.+..|+..+.......+.|+++|+||+|+.......+..+.+. +..++++++|||++|+||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH----HHhCCeEEEEcCCCCcCHHHHHH
Confidence 99999999999999998887655556799999999999865443232222222 22345799999999999999999
Q ss_pred HHHHhhhc
Q 030113 172 WISQRVTG 179 (183)
Q Consensus 172 ~i~~~~~~ 179 (183)
++++.+.+
T Consensus 158 ~i~~~i~~ 165 (166)
T d1ctqa_ 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998864
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-35 Score=192.97 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=127.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.+||+++|++|||||||+++++++.+.. +.++.+..+. .... ....+.+||++|++.+...+..+++++|++++
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence 367999999999999999999999988765 4455553322 2223 34788999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++.++..+..|+..+.......+.|+++|+||+|+.... ...+.. .+. +..++++++|||++|.||++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~e~Sak~g~~i~e 155 (167)
T d1kaoa_ 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGR-ALA----EEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHH-HHH----HHHTSCEEEECTTCHHHHHH
T ss_pred eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHH-HHH----HHcCCeEEEECCCCCcCHHH
Confidence 99999999999999999888765555779999999999986432 222221 211 22345699999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
+|+++++++..
T Consensus 156 ~f~~i~~~i~~ 166 (167)
T d1kaoa_ 156 LFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99999998753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-34 Score=188.54 Aligned_cols=156 Identities=22% Similarity=0.346 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|||||||++++.++++.. +.++.+........ ....+.+||++|++.+...+..++.++|++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 689999999999999999999888765 45565655543333 3478899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|++++.++..+..|+....... ..+.|+++|+||.|+.+.. ..++..+.. ...++++++|||++|+||+++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKA-----KELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHHH-----HHcCCEEEEecCCCCcCHHHHH
Confidence 9999999999999998876543 3579999999999986432 222222222 2245679999999999999999
Q ss_pred HHHHHhhhc
Q 030113 171 EWISQRVTG 179 (183)
Q Consensus 171 ~~i~~~~~~ 179 (183)
++|++.|+.
T Consensus 155 ~~i~~~l~g 163 (164)
T d1yzqa1 155 RRVAAALPG 163 (164)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhhCC
Confidence 999998864
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-34 Score=188.19 Aligned_cols=158 Identities=26% Similarity=0.357 Sum_probs=127.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.+||+++|++|||||||++++..+.+.. +.++.+........ ....+.+||++|++++...+..+++.+++++
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 467999999999999999999999988765 45566655544333 2466789999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++++|..+..|+....... ..+.|+++|+||+|+.+. ....+..+.. ...+++|++|||++|.||+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAk~~~nV~ 155 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ 155 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred EEeeechhhhhhhHHHhhhhhhhcc-CCcceEEEecccchhccccchhHHHHHHHH-----HHcCCEEEEEecCCCCCHH
Confidence 9999999999999999887775443 367999999999998643 2333322222 2345689999999999999
Q ss_pred HHHHHHHHhhh
Q 030113 168 DGLEWISQRVT 178 (183)
Q Consensus 168 ~~~~~i~~~~~ 178 (183)
++|.+|+++++
T Consensus 156 e~f~~l~~~i~ 166 (167)
T d1z0ja1 156 ELFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 99999999874
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-34 Score=188.82 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=128.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.+||+|+|++|||||||++++..+.+.. +.+|.+.... .+.. ....+.+||++|++.+...+..+++.+|++++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence 578999999999999999999999988765 4566654432 2223 45788999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc----------cCCCceEEEEeec
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS----------IKNHDWHIQACSA 160 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S~ 160 (183)
|||++++.+|..+..++....... ..+.|+++|+||+|+.+.....+......... ......+|++|||
T Consensus 83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence 999999999999987777666543 35789999999999864422111111110000 0123468999999
Q ss_pred ccCCCHHHHHHHHHHhhhccCC
Q 030113 161 LTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++|.||+++|+.+++.+..-+|
T Consensus 162 k~~~~V~e~F~~l~~~il~pp~ 183 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVLCPPP 183 (183)
T ss_dssp TTCTTHHHHHHHHHHHHSCCCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999887665
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-35 Score=191.77 Aligned_cols=159 Identities=20% Similarity=0.221 Sum_probs=129.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.+||+|+|++|||||||++++.++.+.. +.+|.+..+. .+..+ ...+.+||++|++.+...+..++..+|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 466899999999999999999999888765 4577766543 23343 4788999999999999888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++++|..+..|+..+.......+.|+++|+||+|+... ...++..+.. +..+++|++|||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~~ 156 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECCTTCHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHH-----HHcCCEEEEEecCCCCCHHH
Confidence 9999999999999999988876655577999999999998643 2333322221 22356799999999999999
Q ss_pred HHHHHHHhhh
Q 030113 169 GLEWISQRVT 178 (183)
Q Consensus 169 ~~~~i~~~~~ 178 (183)
+|+.++..+.
T Consensus 157 ~f~~li~~~~ 166 (167)
T d1xtqa1 157 VFRRIILEAE 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998775
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.6e-35 Score=190.40 Aligned_cols=158 Identities=21% Similarity=0.339 Sum_probs=125.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|||||||++++..+.+.. ..++.+..+ ..+... .+++.+|||||++.+...+..++++++++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence 4899999999999999999999888755 344444433 334443 46789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|++++.++.....|+..+.... ....|+++|+||+|+.+.. ...+..+.. ...++++++|||++|+||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~-----~~~~~~~~~~SAktg~gV~e~ 158 (171)
T d2ew1a1 85 YDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVEKL 158 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHH
T ss_pred eecccchhhhhhhhhhhhhcccc-cccccEEEEEeecccccccchhhhHHHHHH-----HhCCCEEEEEccCCCCCHHHH
Confidence 99999999999999988876543 3568999999999986432 233322222 223456999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|.++++.+..+
T Consensus 159 f~~l~~~l~~~ 169 (171)
T d2ew1a1 159 FLDLACRLISE 169 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-34 Score=188.94 Aligned_cols=164 Identities=20% Similarity=0.176 Sum_probs=125.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEE-EE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEEL-VY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
....+||+|+|++|||||||+++++.+.+.. +.+|.+...... .. ..+.+.+||++|++.+...+..+++++|+++
T Consensus 6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i 85 (185)
T d2atxa1 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 85 (185)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence 3567999999999999999999999988765 446665433322 22 3478899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc---------Ccc-CCCceEEEEee
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL---------HSI-KNHDWHIQACS 159 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~S 159 (183)
+|||+++++||.+...|+....... ..+.|+++|+||+|+.+............. ..+ .....+|++||
T Consensus 86 lv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~S 164 (185)
T d2atxa1 86 ICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 164 (185)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred eccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEec
Confidence 9999999999999888777776543 357999999999998753221111111000 000 11235699999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
|++|.||+++|+.+++.+.
T Consensus 165 Ak~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 165 ALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHc
Confidence 9999999999999998874
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-34 Score=189.36 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=125.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.+||+++|++|||||||++++.++.+.. +.++.+... ..+... .+.+.+||++|+..+......+++.+|++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 345899999999999999999999888765 345555332 223333 4789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||.+++.|+..+..|+..+.........|+++|+||+|+... ....+..+.. +..+++|++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~~~~i~e 157 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLA-----RQLKVTYMEASAKIRMNVDQ 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHH-----HHcCCEEEEEcCCCCcCHHH
Confidence 9999999999999999988776555567999999999998654 2333332222 23456899999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
+|+++++.+.+++
T Consensus 158 ~f~~l~~~i~k~~ 170 (171)
T d2erya1 158 AFHELVRVIRKFQ 170 (171)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-34 Score=188.00 Aligned_cols=160 Identities=23% Similarity=0.370 Sum_probs=128.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|||||||++++..+.+.. ..++.+........ ....+.+||++|++.+...+..++++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 45899999999999999999999888765 55666666544333 34789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
|+|.++..++.....|+..+.... .++.|+++|+||+|+..... ..+..+.+. ...+++|++|||++|.||+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~----~~~~~~~~e~SAk~g~~V~e~ 159 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA----DDNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHH
T ss_pred EeccchhhHHHHHHHHhhhhhhcc-CCCceEEeecccccccccccccHHHHHHHH----HhcCCEEEEeeCCCCCCHHHH
Confidence 999999999999999888875533 36799999999999865422 122222222 234568999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|++|++.+.++
T Consensus 160 f~~l~~~i~~n 170 (170)
T d1r2qa_ 160 FMAIAKKLPKN 170 (170)
T ss_dssp HHHHHHTSCCC
T ss_pred HHHHHHHHhhC
Confidence 99999988753
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.7e-35 Score=189.93 Aligned_cols=158 Identities=22% Similarity=0.291 Sum_probs=121.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|||||||++++.++.+.. ..++.+........ ....+.+||++|++++...+..+++++|++++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 35899999999999999999999988766 45666655544333 24889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||+++++||..+..|+....... ....|+++|+||.|+... ...++..+.. +..++++++|||++|.||++
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a-----~~~~~~~~e~Sak~~~~v~e 155 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIEE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHHH
T ss_pred EEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHHHH-----HHcCCeEEEEecCCCcCHHH
Confidence 999999999999999888765432 256899999999998653 2333333322 23456899999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
+|++|++.+.+
T Consensus 156 ~F~~l~~~i~~ 166 (167)
T d1z08a1 156 LFLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998865
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-34 Score=192.14 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=126.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE------------cCeEEEEEEcCCChhhHhhHHhh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY------------KNIRFEAWDVGGQERLRTSWATY 81 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~------------~~~~~~~~D~~g~~~~~~~~~~~ 81 (183)
-+||+++|++|||||||+++++++.+.. +.++.+..+. .+.. ....+.+|||+|++++...+..+
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence 4899999999999999999999888755 3344333322 2222 13679999999999999999999
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEee
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
++++|++|+|||++++.++..+..|+..+..+......|+++|+||.|+... ....+..+.. +..++++++||
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~-----~~~~~~~~e~S 159 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFETS 159 (186)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEEEB
T ss_pred HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHH-----HHcCCEEEEEe
Confidence 9999999999999999999999999988877766677999999999998643 2233332222 22345799999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
|++|+||+++|+++++.+.++
T Consensus 160 ak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 160 AATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-34 Score=188.63 Aligned_cols=161 Identities=20% Similarity=0.356 Sum_probs=126.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|||||||++++.++.+.. +.++.+..+. .+.. ....+.+||++|++.+...+..+++.+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 5899999999999999999999988765 5567775543 3444 347899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
||.+++.++..+..|+....... ....|+++++||.|+.+......+.........+..+++|++|||++|.||+++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence 99999999999999887765443 35689999999999854322111111111111223456899999999999999999
Q ss_pred HHHHhhh
Q 030113 172 WISQRVT 178 (183)
Q Consensus 172 ~i~~~~~ 178 (183)
+|+++|+
T Consensus 162 ~i~~~i~ 168 (170)
T d1ek0a_ 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHhc
Confidence 9998775
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-33 Score=183.37 Aligned_cols=161 Identities=25% Similarity=0.368 Sum_probs=130.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|+|||||++++.++.+.. ..++.+... ..+.. ....+.+|||||++++...+..+++.+|++++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999888755 334444332 33344 34689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
|||++++.++..+..|+..+.........|+++++||.|...... ..+..+.. +..++++++|||++|+|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~tg~gv~e~ 160 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQCA 160 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHH-----HHCCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999988776667899999999999765433 23322222 223467999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
|+++++.+.+.+
T Consensus 161 f~~l~~~l~~~p 172 (177)
T d1x3sa1 161 FEELVEKIIQTP 172 (177)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHccCc
Confidence 999999998765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-34 Score=187.79 Aligned_cols=159 Identities=23% Similarity=0.390 Sum_probs=126.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|||||||++++..+.+.. +.++.+........ ....+.+||+||++++...+..+++.++++++|
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence 4899999999999999999999888765 44555555443332 357899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
+|.++++++..+..|+..+.... ..+.|+++|+||+|+...... .+....+. ...++++++|||++|.|++++|
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~~~gi~e~f 159 (174)
T d2bmea1 85 YDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA----QENELMFLETSALTGENVEEAF 159 (174)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHH
T ss_pred EecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHHH----HhCCCEEEEeeCCCCcCHHHHH
Confidence 99999999999999998876543 357999999999997543322 11111221 2245689999999999999999
Q ss_pred HHHHHhhhcc
Q 030113 171 EWISQRVTGK 180 (183)
Q Consensus 171 ~~i~~~~~~~ 180 (183)
+++++.+.++
T Consensus 160 ~~l~~~i~~~ 169 (174)
T d2bmea1 160 VQCARKILNK 169 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-34 Score=186.08 Aligned_cols=155 Identities=24% Similarity=0.374 Sum_probs=122.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccc-cCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+|+|++|+|||||++++.++.+... .++.+.... ....+ ...+.+||++|++++...+..+++++|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 48999999999999999999998887653 334443333 33333 46899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+++.+++.....|+..+... .....|+++++||.|+..... .++..+.. +..++++++|||++|.||+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Saktg~~v~e~ 157 (166)
T d1z0fa1 84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENVEDA 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHH
T ss_pred eccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999888877543 346799999999999854322 22222222 223568999999999999999
Q ss_pred HHHHHHhh
Q 030113 170 LEWISQRV 177 (183)
Q Consensus 170 ~~~i~~~~ 177 (183)
|+++++.+
T Consensus 158 f~~i~~~i 165 (166)
T d1z0fa1 158 FLEAAKKI 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-35 Score=189.86 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=123.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++||+++|++|||||||+++++++.+.. +.+|.+..+..... ..+.+.+||++|++.+. ....+++.++++++||
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 6899999999999999999999988765 56777766544332 34789999999998764 5567889999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCC-CHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGD-GLVDG 169 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-gi~~~ 169 (183)
|++++.++..+..|+..........+.|+++|+||+|+... ...++..+.. +..+++|++|||++|. ||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a-----~~~~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNITEI 155 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCHHHH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHH-----HHhCCeEEEEccccCCcCHHHH
Confidence 99999999999887665544444467999999999998643 2333332222 2234579999999998 59999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|..+++.+.++
T Consensus 156 F~~l~~~i~~~ 166 (168)
T d2atva1 156 FYELCREVRRR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=186.80 Aligned_cols=162 Identities=20% Similarity=0.250 Sum_probs=126.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEE-EE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEEL-VY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.+||+++|++|||||||++++..+.+.. +.+|.+...... .. ....+.+||++|++++...+..+++++|++++|
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence 46899999999999999999999988765 456666444322 22 346899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-------------HHhhcCcCccCCCceEEEEe
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-------------ITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 158 (183)
||+++++||+++..|+....... ..+.|+++|+||.|+.+.....+ ..+.+.. .....+|++|
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~e~ 157 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR---DLKAVKYVEC 157 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH---HTTCSCEEEC
T ss_pred cccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHH---HcCCCeEEEE
Confidence 99999999999988877776543 35799999999999864321111 1111110 1234579999
Q ss_pred ecccCCCHHHHHHHHHHhhhccC
Q 030113 159 SALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
||++|.||+++|+.++..+.+.+
T Consensus 158 SAk~~~~V~e~f~~l~~~~~~~~ 180 (191)
T d2ngra_ 158 SALTQKGLKNVFDEAILAALEPP 180 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHHTSCC
T ss_pred eCCCCcCHHHHHHHHHHHHhcCc
Confidence 99999999999999998876653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-33 Score=188.30 Aligned_cols=160 Identities=24% Similarity=0.385 Sum_probs=127.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.-+||+|+|++|||||||++++.++.+.. +.++.+..... +.. ....+.+|||||++.+...+..++++++++|+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 45899999999999999999999887655 45666655443 333 45788999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--AEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||+++++++.....++..+.... ..+.|+++|+||.|+.+.... .+..... ...+.+++++||++|.||++
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e 158 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVED 158 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHH
T ss_pred EEeCcchhhhhhHhhhhhhhhhcc-cCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHHH
Confidence 999999999999988888775433 467999999999998754332 2222221 22345699999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
+|+++++.+.+..
T Consensus 159 ~f~~l~~~i~~~~ 171 (194)
T d2bcgy1 159 AFLTMARQIKESM 171 (194)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=100.00 E-value=2.3e-31 Score=173.42 Aligned_cols=166 Identities=46% Similarity=0.879 Sum_probs=150.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
+.+||+++|++|||||||++++.++++....++.+........+...+.+||.+|.......+...+...+++++++|+.
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 83 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence 56899999999999999999999999988888888888888889999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
+..++.....++............|+++++||.|+.+.....++...++........+++++|||++|+||+++|++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~ 163 (169)
T d1upta_ 84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 163 (169)
T ss_dssp CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999888888888777766678999999999999988888888887776666778899999999999999999999999
Q ss_pred hhhccC
Q 030113 176 RVTGKA 181 (183)
Q Consensus 176 ~~~~~~ 181 (183)
.+.+++
T Consensus 164 ~l~~k~ 169 (169)
T d1upta_ 164 TLKSRQ 169 (169)
T ss_dssp HHHTCC
T ss_pred HHHhCC
Confidence 997763
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.9e-33 Score=183.11 Aligned_cols=162 Identities=21% Similarity=0.274 Sum_probs=114.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE-----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY-----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
-+||+++|++|||||||++++.++.+.. +.++.+........ ....+.+||++|++++...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 4799999999999999999999888765 34555544433333 24678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhC---CCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 91 VIDSTDRARISIMKDELFRLLG---HEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|||++++.||..+..|+..+.. .....+.|+++|+||+|+.+... ..+..+.+.. .....++++|||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~e~SA~~g~g 158 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAIN 158 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBS
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH---HcCCCeEEEEeCCCCcC
Confidence 9999999999998888877643 33345789999999999865321 1122222221 12345699999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
|+++|+++++.+.+++
T Consensus 159 v~e~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 159 VDTAFEEIARSALQQN 174 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4e-34 Score=187.48 Aligned_cols=159 Identities=21% Similarity=0.353 Sum_probs=98.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+-+||+++|++|||||||++++.++.+.. ..++.+... ..+..+ ...+.+||+||++.+...+..+++++|++|+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence 45899999999999999999999887654 345555433 344444 4678889999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--AEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++.++..+..|+..+.... ..+.|+++|+||.|+...... .+..... ...++++++|||++|+||++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~g~gv~e 158 (173)
T d2fu5c1 85 VYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVEN 158 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHHH
T ss_pred EEECCChhhHHHHHHHHHHhhhhc-cCCceEEEEEecccchhhcccHHHHHHHHH-----HhcCCEEEEEeCCCCCCHHH
Confidence 999999999999998888875433 467999999999998764332 2222221 22356899999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|+++++.+.++
T Consensus 159 ~f~~l~~~i~~k 170 (173)
T d2fu5c1 159 AFFTLARDIKAK 170 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-33 Score=183.22 Aligned_cols=158 Identities=23% Similarity=0.357 Sum_probs=117.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc--ccCcccceeEEE--EEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT--THPTVGSNVEEL--VYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~--~~~~~~~~~~~~--~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..+||+++|+++||||||++++.++.+.. ..++.+.+.... ... ...+.+|||+|++++...+..+++++|+++
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i 84 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence 35899999999999999999999887643 334555555443 333 368899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++.....++....... ....|+++|+||.|+.+... .++..+.. +..++++++|||++|.||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gi~ 158 (170)
T d2g6ba1 85 LLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLNVD 158 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHH
T ss_pred EEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 9999999999999999888776543 25689999999999876432 22222222 2234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++|+++++.|.+
T Consensus 159 e~f~~l~~~i~k 170 (170)
T d2g6ba1 159 LAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC
Confidence 999999998763
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-32 Score=178.91 Aligned_cols=158 Identities=23% Similarity=0.405 Sum_probs=123.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
-+||+++|++|||||||++++.++.+.. ..++.+.. ...+..+ ...+.+||++|++++...+..+++.++++++|
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v 83 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 83 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence 4799999999999999999999887754 33444433 3334444 46889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
||.++++||.....|+..+..+.. .+.|+++|+||+|+.+.... .+...... ...+.++++|||++|+|++++|
T Consensus 84 ~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~i~e~f 158 (175)
T d2f9la1 84 YDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFA----EKNNLSFIETSALDSTNVEEAF 158 (175)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHH
T ss_pred EECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHhh----cccCceEEEEecCCCcCHHHHH
Confidence 999999999999999988866543 57999999999998754221 11111111 2234689999999999999999
Q ss_pred HHHHHhhhc
Q 030113 171 EWISQRVTG 179 (183)
Q Consensus 171 ~~i~~~~~~ 179 (183)
+++++.+.+
T Consensus 159 ~~l~~~i~~ 167 (175)
T d2f9la1 159 KNILTEIYR 167 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-33 Score=180.94 Aligned_cols=159 Identities=24% Similarity=0.371 Sum_probs=124.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
-+||+++|++|+|||||+++++++.+.. +.++.+..+.. +... ...+.+|||||++.+...+..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 3799999999999999999999988765 45666655443 3333 46788899999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
||.+++.++..+..++....... ....|++++++|.|+.......+....+.. ..++++++|||++|+||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHHHH----hcCCeEEEECCCCCCCHHHHHH
Confidence 99999999999888777765543 356899999999998765444443333322 2346799999999999999999
Q ss_pred HHHHhhhcc
Q 030113 172 WISQRVTGK 180 (183)
Q Consensus 172 ~i~~~~~~~ 180 (183)
++++.+.++
T Consensus 157 ~l~~~i~~k 165 (166)
T d1g16a_ 157 TLAKLIQEK 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988765
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-33 Score=184.94 Aligned_cols=158 Identities=24% Similarity=0.368 Sum_probs=122.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccc-cCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
-+||+|+|++|||||||++++.++.+... .++...... .... ....+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence 47999999999999999999998886553 333333222 2222 357899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||++++.+|.....|+..+.... ..+.|+++|+||+|+... ....+... +. ...++++++|||++|.||+++
T Consensus 83 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~-~a----~~~~~~~~e~Sa~tg~~V~e~ 156 (173)
T d2a5ja1 83 YDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEA-FA----REHGLIFMETSAKTACNVEEA 156 (173)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEEECTTTCTTHHHH
T ss_pred EeecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhhhhhhHHHHHHH-HH----HHcCCEEEEecCCCCCCHHHH
Confidence 99999999999999998886543 357999999999997543 22222222 22 223468999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|.++++.+.++
T Consensus 157 f~~i~~~i~~~ 167 (173)
T d2a5ja1 157 FINTAKEIYRK 167 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-33 Score=181.00 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=119.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcc--cccCccccee--EEEEE--cCeEEEEEEcCCChhh-HhhHHhhccCCCEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVGSNV--EELVY--KNIRFEAWDVGGQERL-RTSWATYYRGTHAVI 89 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~--~~~~~~~~~~--~~~~~--~~~~~~~~D~~g~~~~-~~~~~~~~~~~d~ii 89 (183)
-+||+++|++|+|||||++++.+..+. ...++.+... ..+.. ....+.+||+++.... ...+..+++++|++|
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~i 82 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 82 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceee
Confidence 489999999999999999999877643 3344555433 33333 3467789998754322 225567889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+. +.+. ...+++|++|||++|.||+
T Consensus 83 lvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~Sak~g~~i~ 157 (172)
T d2g3ya1 83 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RACA----VVFDCKFIETSAAVQHNVK 157 (172)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHHH----HHHTCEEEECBTTTTBSHH
T ss_pred eeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHH-HHHH----HHcCCeEEEEeCCCCcCHH
Confidence 999999999999999999988877666789999999999986532 22222 2221 2335689999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++++.+..++
T Consensus 158 ~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 158 ELFEGIVRQVRLRR 171 (172)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999987654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-32 Score=176.84 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=120.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEE-EEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE-LVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+.+||+++|++|||||||++++.++.+....++.+..+.. +..+ ...+.+|||+|+..+ .+++.+|++|+|
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV 77 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV 77 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence 46799999999999999999999999887766666655432 3443 478999999998865 367889999999
Q ss_pred EeCCCcccHHHHHHHHHHHh--CCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 92 IDSTDRARISIMKDELFRLL--GHEDLQHSVVLIFANKQDLKDAMT----PAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~--~~~~~~~~~vilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
||+++++||..+..|+..+. ........|+++|+||.|+..... ..+..+... ...+++|++|||++|.|
T Consensus 78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~~~ 153 (175)
T d2bmja1 78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA----DMKRCSYYETCATYGLN 153 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH----TSTTEEEEEEBTTTTBT
T ss_pred eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH----HhCCCeEEEeCCCCCcC
Confidence 99999999999988777653 333446689999999999754322 222222211 23467899999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++|..+++.+..++
T Consensus 154 v~~~F~~l~~~i~~~~ 169 (175)
T d2bmja1 154 VDRVFQEVAQKVVTLR 169 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887643
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=7.1e-32 Score=178.39 Aligned_cols=160 Identities=19% Similarity=0.301 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+|+|.+|||||||++++.++.+.. +.+|.+.+...... ....+.+||++|+......+..++..+|++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 799999999999999999999888765 45677766555444 3478899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhC---CCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 93 DSTDRARISIMKDELFRLLG---HEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~---~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
|.++..++..+..|+..+.. .....+.|+++|+||+|+.+.....+..+.+.. ...++++++|||++|.||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH---HhcCCeEEEEcCCCCcCHHHH
Confidence 99999999998888766643 233346899999999998765443333332221 234567999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|+++++.+.++
T Consensus 160 f~~l~~~i~~~ 170 (184)
T d1vg8a_ 160 FQTIARNALKQ 170 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999987664
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.5e-31 Score=173.02 Aligned_cols=160 Identities=20% Similarity=0.334 Sum_probs=123.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.-+||+|+|++|||||||++++.++.+.. +.++.+..... ... ....+.+||++|+......+..++..++++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 34799999999999999999999887765 44555544322 222 24778999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHh---CCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 91 VIDSTDRARISIMKDELFRLL---GHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
|+|.+++.+++.+..|+..+. ......+.|+++|+||.|+.+.. ...+..+... .....+|++|||++|.||
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~~~~~e~Sak~~~gI 160 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNV 160 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTH
T ss_pred EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCCCeEEEEcCCCCcCH
Confidence 999999999999888875553 34444679999999999986533 3333332222 123457999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030113 167 VDGLEWISQRVTG 179 (183)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (183)
+++|+++++.+..
T Consensus 161 ~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 161 AAAFEEAVRRVLA 173 (174)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.5e-31 Score=175.96 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=122.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
..||+++|++|||||||++++..+.++. +.++.+.... .+.. ....+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 4789999999999999999999998866 3455543322 2222 4578899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--------------CHHHHHhhcCcCccCCCceEEEEe
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--------------TPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
|+++++||..+..++........ .+.|+++|+||.|+.... ...+..+... .....+|++|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~----~~~~~~y~E~ 156 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATYIEC 156 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEEEEC
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH----HhCCCeEEEE
Confidence 99999999999988877765433 579999999999985421 1112111111 1123579999
Q ss_pred ecccCC-CHHHHHHHHHHhhhcc
Q 030113 159 SALTGD-GLVDGLEWISQRVTGK 180 (183)
Q Consensus 159 S~~~~~-gi~~~~~~i~~~~~~~ 180 (183)
||++|. |++++|+.++..+.++
T Consensus 157 SAk~~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 157 SALQSENSVRDIFHVATLACVNK 179 (179)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHTC
T ss_pred eCCCCCcCHHHHHHHHHHHHhcC
Confidence 999998 5999999999988764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.5e-32 Score=176.94 Aligned_cols=154 Identities=27% Similarity=0.383 Sum_probs=119.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHh-hHHhhccCCCEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRT-SWATYYRGTHAVI 89 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii 89 (183)
+.+||+++|++|||||||++++..+.+.. ..++.+.... .... ....+.+||++|...... .+..+++++|+++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 35899999999999999999999888765 3444443332 2222 457889999999887754 5678899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeeccc---CC
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALT---GD 164 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~ 164 (183)
+|||++++++|..+..|+..+..+....+.|+++|+||+|+.+. ...++..+.. +..++++++|||++ ++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAkt~~~~~ 155 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-----DTHSMPLFETSAKNPNDND 155 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEECCSSSGGGGS
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHH-----HHCCCEEEEEecccCCcCc
Confidence 99999999999999999998877666678999999999998654 2333322222 22345799999986 56
Q ss_pred CHHHHHHHHH
Q 030113 165 GLVDGLEWIS 174 (183)
Q Consensus 165 gi~~~~~~i~ 174 (183)
||+++|++|+
T Consensus 156 ~V~e~F~~lA 165 (165)
T d1z06a1 156 HVEAIFMTLA 165 (165)
T ss_dssp CHHHHHHHHC
T ss_pred CHHHHHHHhC
Confidence 9999998873
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.7e-30 Score=166.94 Aligned_cols=157 Identities=32% Similarity=0.568 Sum_probs=139.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
||+++|++|||||||++++.++.+....++.+..............+||++|...+...+..++..++++++++|.++..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 81 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence 79999999999999999999999988889999999888889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-------CCCceEEEEeecccCCCHHHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-------KNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
++.....++..........+.|+++++||.|+.......++.+.+..... ....+++++|||++|+|++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~ 161 (166)
T d2qtvb1 82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161 (166)
T ss_dssp GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence 99999999998888888888999999999999877676666665543221 23567899999999999999999
Q ss_pred HHHH
Q 030113 172 WISQ 175 (183)
Q Consensus 172 ~i~~ 175 (183)
||.+
T Consensus 162 ~l~~ 165 (166)
T d2qtvb1 162 WLSQ 165 (166)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9975
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.97 E-value=1.3e-29 Score=167.36 Aligned_cols=165 Identities=28% Similarity=0.525 Sum_probs=134.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
..++..||+++|++|||||||++++.++.+....++.+.+...+......+..||+.++......+..+....+++++++
T Consensus 9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (186)
T d1f6ba_ 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 88 (186)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeee
Confidence 45788999999999999999999999999888888888888888889999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC------------ccCCCceEEEEeec
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH------------SIKNHDWHIQACSA 160 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~S~ 160 (183)
|.++...+.....++..........+.|+++++||.|+.......++.+.+... ......+++++|||
T Consensus 89 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 168 (186)
T d1f6ba_ 89 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 168 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred eccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeC
Confidence 999999998888888887777767789999999999998776666665554321 11234678999999
Q ss_pred ccCCCHHHHHHHHHHhh
Q 030113 161 LTGDGLVDGLEWISQRV 177 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~ 177 (183)
++|+|++|+|+||++++
T Consensus 169 ~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 169 LKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999999876
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=7.2e-29 Score=165.72 Aligned_cols=164 Identities=17% Similarity=0.260 Sum_probs=131.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
+++||+++|+.|||||||++++..+.+. +.||+|+....+......+.+||++|++.+...+..+++.++++++|+|.+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence 5789999999999999999999888774 679999999999999999999999999999999999999999999999998
Q ss_pred Ccc----------cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC------------------CCHHHHH-----hh
Q 030113 96 DRA----------RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA------------------MTPAEIT-----DA 142 (183)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~------------------~~~~~~~-----~~ 142 (183)
+.. ++.+....|..++......+.|+++++||.|+... ....... ..
T Consensus 80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 159 (200)
T d2bcjq2 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159 (200)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence 764 34555667777776666678999999999997421 0111111 11
Q ss_pred cCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 143 LSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
..........+.+++|||++|.||+++|+.+.+.+.++
T Consensus 160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 22222334567889999999999999999998888754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=9.7e-28 Score=157.54 Aligned_cols=159 Identities=19% Similarity=0.083 Sum_probs=112.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChh--------hHhhHHhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQER--------LRTSWATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 83 (183)
..-.|+|+|++|+|||||++++++...... ..+...........+.++.+|||||... +......++.
T Consensus 4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 83 (178)
T d1wf3a1 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 83 (178)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence 345799999999999999999998764332 2333444555667889999999999633 2333455678
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
++|++++|+|++++... ...++...+... ..+.|+++|+||+|+.+. .++..+.+... .....++++||++|
T Consensus 84 ~ad~il~v~D~~~~~~~--~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~---~~~~~~~~iSA~~~ 155 (178)
T d1wf3a1 84 DVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKY--PEEAMKAYHEL---LPEAEPRMLSALDE 155 (178)
T ss_dssp SCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSS--HHHHHHHHHHT---STTSEEEECCTTCH
T ss_pred cccceeeeechhhhhcc--cccchhhheecc-ccchhhhhhhcccccccC--HHHHHHHHHhh---cccCceEEEecCCC
Confidence 99999999999876443 334444444332 246899999999998653 22222222221 22346889999999
Q ss_pred CCHHHHHHHHHHhhhccCC
Q 030113 164 DGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~~~~ 182 (183)
.|+++++++|.+.+++.++
T Consensus 156 ~gi~~L~~~i~~~lpe~p~ 174 (178)
T d1wf3a1 156 RQVAELKADLLALMPEGPF 174 (178)
T ss_dssp HHHHHHHHHHHTTCCBCCC
T ss_pred CCHHHHHHHHHHhCCCCCC
Confidence 9999999999999987654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=1.8e-28 Score=163.16 Aligned_cols=161 Identities=17% Similarity=0.314 Sum_probs=125.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
+++||+++|+.|||||||++++....+ ++.++....+......+++||++|++.+...+..+++.++++++|+|.+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~ 76 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS 76 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence 478999999999999999999976544 4556777778889999999999999999999999999999999999998
Q ss_pred CcccH----------HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC-----------------CCHHHHH----hh-c
Q 030113 96 DRARI----------SIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA-----------------MTPAEIT----DA-L 143 (183)
Q Consensus 96 ~~~s~----------~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~-----------------~~~~~~~----~~-~ 143 (183)
+..++ .+....+..++........|+++++||.|+... ....+.. .. .
T Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 156 (195)
T d1svsa1 77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE 156 (195)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence 77654 455667777777777778999999999986310 1111111 11 1
Q ss_pred Cc-CccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 144 SL-HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 144 ~~-~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
.. .......+.+++|||+++.||+++|+.+.+.+.++
T Consensus 157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 11 11223567788999999999999999999887764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1e-26 Score=150.25 Aligned_cols=148 Identities=18% Similarity=0.127 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChhh--------HhhHHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQERL--------RTSWATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~ 85 (183)
+||+++|++|+|||||+|+|.+...... ..+.......+...+..+.++|+||..+. ......++..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 81 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence 7999999999999999999998764322 22333334556778899999999994332 12234557899
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|++++++|..+..++.....+...+... ..+.|+++|+||+|+.+... ...+....+++++||++|.|
T Consensus 82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~~~----------~~~~~~~~~~~~iSAk~~~g 149 (161)
T d2gj8a1 82 DRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTGEG 149 (161)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTCTT
T ss_pred cccceeeccccccchhhhhhhhhhhhhc--ccccceeeccchhhhhhhHH----------HHHHhCCCcEEEEECCCCCC
Confidence 9999999999887765555443333222 24689999999999854321 11123567899999999999
Q ss_pred HHHHHHHHHHhh
Q 030113 166 LVDGLEWISQRV 177 (183)
Q Consensus 166 i~~~~~~i~~~~ 177 (183)
+++++++|.+.|
T Consensus 150 i~~L~~~l~~~l 161 (161)
T d2gj8a1 150 VDVLRNHLKQSM 161 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 999999999875
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=5.9e-27 Score=156.43 Aligned_cols=163 Identities=18% Similarity=0.314 Sum_probs=120.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
+.+||+++|++|||||||++++. ....+.||.|+....+..+...+.+||++|++.+...+..+++.++++++++|.+
T Consensus 1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 35899999999999999999993 2234678999999999999999999999999999999999999999999999998
Q ss_pred Cc----------ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC------------------CCHHHHHhhcC---
Q 030113 96 DR----------ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA------------------MTPAEITDALS--- 144 (183)
Q Consensus 96 ~~----------~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~------------------~~~~~~~~~~~--- 144 (183)
+. .++.....++..++......+.|+++++||.|+.+. .......+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 75 346677778888888777788999999999997421 11111111111
Q ss_pred -c--CccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 145 -L--HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 145 -~--~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
. .......+.+++|||+++.||+++|+.+.+.+.++
T Consensus 159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~ 197 (200)
T d1zcba2 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 197 (200)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence 0 11122445677899999999999999988876653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.94 E-value=1.4e-26 Score=151.98 Aligned_cols=162 Identities=17% Similarity=0.130 Sum_probs=113.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccccc----------CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----------PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYR 83 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (183)
..+.++|+++|++|+|||||+|+|++....... .+.......+...+..+.++|+||+.++...+...+.
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~ 81 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 81 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence 357789999999999999999999864322111 1222333445567889999999999999999999999
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHh---hcCcCccCCCceEEEEeec
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITD---ALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~S~ 160 (183)
.+|++++|+|++++..... ...+..+.. .++|+++|+||+|+.+........+ .+..........+++++||
T Consensus 82 ~~d~~ilv~d~~~g~~~~~-~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA 156 (179)
T d1wb1a4 82 IIDLALIVVDAKEGPKTQT-GEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 156 (179)
T ss_dssp SCCEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hccccccccccccccchhh-hhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 9999999999997643322 222222221 3689999999999876432222111 1111111234568999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|+|++++++.|.+.+.+.
T Consensus 157 ~~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 157 KTGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp TTCTTHHHHHHHHHHHHHHS
T ss_pred cCCcCHHHHHHHHHhcCCcc
Confidence 99999999999999988764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=3.2e-26 Score=150.46 Aligned_cols=157 Identities=24% Similarity=0.298 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEE-cCeEEEEEEcCCChh-------hHhhHHhhccCCCE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVY-KNIRFEAWDVGGQER-------LRTSWATYYRGTHA 87 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 87 (183)
.|+++|.+|||||||+|+|++...... ..+.......... .+..+.+|||||... ........+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 489999999999999999988764322 2233333322222 467899999999422 22334456788999
Q ss_pred EEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++++|..... .......++.... ....++|+++|+||+|+.......+..+.+. ..+.+++++||++|+|
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAYD--PALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 155 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHC--HHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhhcccccccccchhhhhhhhhccc--cccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEcCCCCC
Confidence 99999987542 2222223332221 1113479999999999976544444444433 2355799999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030113 166 LVDGLEWISQRVTGKAP 182 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (183)
++++++.|.+.+...++
T Consensus 156 id~L~~~i~~~l~~~~~ 172 (180)
T d1udxa2 156 LPALKEALHALVRSTPP 172 (180)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 99999999998876654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=4.7e-26 Score=148.48 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=103.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCC---------hhhHhhHHhhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQ---------ERLRTSWATYYRGT 85 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~~~ 85 (183)
.|+++|++|+|||||+++|++...... ..+.......+......+.++|++|. .........++..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 689999999999999999998765332 23333445567778899999999983 12233445567899
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|+++++.|.+++..... ..+...+.. .++|+++|+||+|+.++.......+... ....+++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~~~--~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREFEREVKPELYS-----LGFGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGG-----GSSCSCEECBTTTTBS
T ss_pred cEEEEeecccccccccc--ccccccccc---ccccccccchhhhhhhhhhhHHHHHHHh-----cCCCCeEEEecCCCCC
Confidence 99999999987654322 222222221 3589999999999854322211111211 1223478999999999
Q ss_pred HHHHHHHHHHhhhccCCC
Q 030113 166 LVDGLEWISQRVTGKAPS 183 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~~ 183 (183)
+++++++|.+.+.+...+
T Consensus 152 id~L~~~i~~~l~e~~~~ 169 (171)
T d1mkya1 152 LDTMLETIIKKLEEKGLD 169 (171)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCCC
Confidence 999999999999887653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.5e-25 Score=144.54 Aligned_cols=146 Identities=26% Similarity=0.289 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChh---------hHhhHHhhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQER---------LRTSWATYYRG 84 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 84 (183)
+||+++|.+|+|||||+|+|.+....... .+.......+...+..+.+|||||... ........+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 58999999999999999999887643322 333344556777899999999999311 11223445678
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
+|++++|+|++++.......-+ ... ...++++++||.|+.+.....++...+.. ..+++++||++|+
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~~--~~~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKIL--ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHHH--HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhhhhh--hhc-----ccccceeeeeeccccchhhhHHHHHHhCC------CCcEEEEECCCCC
Confidence 9999999999988765433222 221 34679999999999888777777766653 2359999999999
Q ss_pred CHHHHHHHHHHh
Q 030113 165 GLVDGLEWISQR 176 (183)
Q Consensus 165 gi~~~~~~i~~~ 176 (183)
|+++++++|.+.
T Consensus 148 gi~~L~~~I~ke 159 (160)
T d1xzpa2 148 GLEKLEESIYRE 159 (160)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc
Confidence 999999998764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=5.7e-26 Score=153.68 Aligned_cols=161 Identities=18% Similarity=0.261 Sum_probs=127.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
+.+||+++|+.|||||||++++..++ ..||.|+....+..++..+++||++|++.++..|..++++++++++|+|.+
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s 81 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 81 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETT
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcc
Confidence 56899999999999999999996553 457899998899999999999999999999999999999999999999998
Q ss_pred Cc----------ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC------CCH-----------------------
Q 030113 96 DR----------ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA------MTP----------------------- 136 (183)
Q Consensus 96 ~~----------~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~------~~~----------------------- 136 (183)
+. .++.+...++..++......++|++|++||.|+.+. ...
T Consensus 82 ~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~ 161 (221)
T d1azta2 82 SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGED 161 (221)
T ss_dssp GGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCC
T ss_pred ccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCc
Confidence 54 346677788888888877788999999999997421 110
Q ss_pred ---HHH--------HhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 137 ---AEI--------TDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 137 ---~~~--------~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.+. .............+..+++||.++.+|+.+|+.+.+.|.+
T Consensus 162 ~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 162 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 011 1111111112345667889999999999999887766654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=1.7e-26 Score=152.31 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCC-----------hh----hHhhHHhhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQ-----------ER----LRTSWATYYR 83 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~----~~~~~~~~~~ 83 (183)
.|+++|++|+|||||+|+|.+.... .....+++.....+....+.++||||. +. +........+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK 80 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeecccccccccceecccCCceeccccccccccccchhhhhhhhhccc
Confidence 5899999999999999999987642 222222222222233334678999993 11 1222344567
Q ss_pred CCCEEEEEEeCCCcccHHHHH---------HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhcCcCccCCCc
Q 030113 84 GTHAVIVVIDSTDRARISIMK---------DELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--AEITDALSLHSIKNHD 152 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~---------~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 152 (183)
.+|++++|+|++......... ..+...+.. .++|+++|+||+|+.+.... ....+.+.. ......
T Consensus 81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~ 156 (184)
T d2cxxa1 81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEID 156 (184)
T ss_dssp GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGGHH
T ss_pred ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-cccccC
Confidence 899999999987542211110 111111111 36899999999998643211 111222221 122234
Q ss_pred eEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 153 WHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 153 ~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
..++++||++|.|+++++++|.+.+.++
T Consensus 157 ~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 157 KVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp HHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 4588999999999999999999998865
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=2.6e-25 Score=146.77 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=108.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChhh------------Hhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQERL------------RTS 77 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------~~~ 77 (183)
....+||+++|++|+|||||+|++++..... ...+.......+..++..+.++|+||.... ...
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence 3567999999999999999999999876432 222333444556778889999999995332 233
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEE
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (183)
...+++.+|++++|+|++.+..- ...++...+.. .+.|+++|+||+|+.... ...++.+.+..........++
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~--~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITR--QDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 159 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH--HHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhcCCEEEEeecccccchh--hHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence 45556789999999999876432 22222222222 458999999999985433 233444443333223345679
Q ss_pred EEeecccCCCHHHHHHHHHHhhhc
Q 030113 156 QACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+++||++|.|+++++++|.+.+..
T Consensus 160 ~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 160 IFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999776654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.92 E-value=1.8e-25 Score=148.52 Aligned_cols=162 Identities=21% Similarity=0.119 Sum_probs=107.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeE--EE---------------------EEcCeEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVE--EL---------------------VYKNIRFE 64 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~--~~---------------------~~~~~~~~ 64 (183)
++..++|+++|+.++|||||+++|.+..... ...+....+. .. ......+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 4678999999999999999999997643211 1111111111 11 11134689
Q ss_pred EEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcC
Q 030113 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALS 144 (183)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~ 144 (183)
++||||+++|...+...+..+|++++|+|+.++.........+...... ...+++++.||+|+.+.....+....+.
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~ 158 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 158 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999874322233333222211 1245888999999876432222221111
Q ss_pred c--CccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 145 L--HSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 145 ~--~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
. .......++++++||++|+|+++|++.+.+.++
T Consensus 159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 159 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 1 111234678999999999999999999988764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=4.5e-24 Score=143.06 Aligned_cols=158 Identities=25% Similarity=0.331 Sum_probs=113.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE---cCeEEEEEEcCCChhhH-hhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY---KNIRFEAWDVGGQERLR-TSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~v~d~ 94 (183)
+|+++|++|+|||||++++.++.+....++.+.+...+.+ ....+.+||++|++++. ..+..++..++++++|+|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence 6899999999999999999999888777888877776665 46789999999999885 5677888999999999999
Q ss_pred CCcccH-HHHHHHHHHHhCC--CCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc------------------------C-
Q 030113 95 TDRARI-SIMKDELFRLLGH--EDLQHSVVLIFANKQDLKDAMTPAEITDALSL------------------------H- 146 (183)
Q Consensus 95 ~~~~s~-~~~~~~~~~~~~~--~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~------------------------~- 146 (183)
++..++ .....++..++.. .....+|+++++||+|+.......++.+.+.. .
T Consensus 82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
T d2fh5b1 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 161 (207)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence 987653 4444444444321 12245899999999999876555443322210 0
Q ss_pred ---------ccCCCceEEEEeecccCCC------HHHHHHHHHHh
Q 030113 147 ---------SIKNHDWHIQACSALTGDG------LVDGLEWISQR 176 (183)
Q Consensus 147 ---------~~~~~~~~~~~~S~~~~~g------i~~~~~~i~~~ 176 (183)
......+.++++|++++.| ++++-+|+.+.
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 0001346789999999987 78888887653
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.9e-24 Score=143.62 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=98.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCc-ccccCccccee-EEEEEcCeEEEEEEcCCC-------------hhhHhhHH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNV-EELVYKNIRFEAWDVGGQ-------------ERLRTSWA 79 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~-------------~~~~~~~~ 79 (183)
..-.+|+|+|++|+|||||+|+|.+... .......+.+. .........+.+.|++|. ..+.....
T Consensus 21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T d1svia_ 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccchhhhHHhhhh
Confidence 3345899999999999999999998653 22222222111 111122345566777762 11122233
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
..+..++++++|+|++.+.. .....+...+.. .++|+++|+||+|+.+.....+..+.+..........+++++|
T Consensus 101 ~~~~~~~~vi~viD~~~~~~--~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 175 (195)
T d1svia_ 101 TTREELKAVVQIVDLRHAPS--NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred ccccchhhhhhhhhcccccc--cccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence 44567799999999986532 122222222222 3589999999999876655555444443333344567899999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
|++|.|+++++++|.+.+.
T Consensus 176 A~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 176 SETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999988764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.91 E-value=1.7e-24 Score=144.81 Aligned_cols=164 Identities=16% Similarity=0.064 Sum_probs=108.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccc------cCc--ccceeEEE--------------------------EE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT------HPT--VGSNVEEL--------------------------VY 58 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~------~~~--~~~~~~~~--------------------------~~ 58 (183)
..++.++|+++|+.++|||||+++|++...... ..+ .+...... ..
T Consensus 4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (205)
T d2qn6a3 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK 83 (205)
T ss_dssp CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence 346779999999999999999999976321100 000 00000000 01
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~ 138 (183)
...++.++|+||+.+|...+...+..+|++|+|+|+.++-........+...... .-.|+++++||+|+.+......
T Consensus 84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~ 160 (205)
T d2qn6a3 84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALS 160 (205)
T ss_dssp EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHH
T ss_pred ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHH
Confidence 1247899999999999999999999999999999998863222223333333221 2258899999999975433222
Q ss_pred HHhhcCc--CccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 139 ITDALSL--HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
....... .......++++++||++|.|++++++.|.+.++.
T Consensus 161 ~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 161 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 2111111 1223356789999999999999999999988764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.91 E-value=5.2e-24 Score=140.75 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=112.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC-------Cc------------ccccCcccceeEEEEEcCeEEEEEEcCCChhhH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG-------EV------------VTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (183)
++.++|+++|+.++|||||+++|.+. .. .+...|.......+.+....+.++||||+.+|.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence 35689999999999999999999641 00 011223334445566788999999999999999
Q ss_pred hhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-H----HHHhhcCcCccCC
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-A----EITDALSLHSIKN 150 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~ 150 (183)
..+...+..+|++++|+|+.++.. ......+...... ...|+|+++||+|+..+... . ++.+.+.......
T Consensus 81 ~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 156 (196)
T d1d2ea3 81 KNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (196)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999998643 2233333333222 23678999999998753221 1 2222332222333
Q ss_pred CceEEEEeecccC----------CCHHHHHHHHHHhhh
Q 030113 151 HDWHIQACSALTG----------DGLVDGLEWISQRVT 178 (183)
Q Consensus 151 ~~~~~~~~S~~~~----------~gi~~~~~~i~~~~~ 178 (183)
..++++++|+++| +|+.++++.+.+.++
T Consensus 157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 5678999999998 589999999887764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=1e-23 Score=138.97 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEE-cCeEEEEEEcCCChh-------hHhhHHhhccCCCE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVY-KNIRFEAWDVGGQER-------LRTSWATYYRGTHA 87 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 87 (183)
+|+++|++|+|||||+|+|.+..... ...|.........+ ....+.+|||||..+ ........+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 58999999999999999998766422 22334444444444 346799999999522 11223344567899
Q ss_pred EEEEEeCCCcccHH--HHH--HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 88 VIVVIDSTDRARIS--IMK--DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 88 ii~v~d~~~~~s~~--~~~--~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
++++++........ ... .............++|+++|+||+|+.+.. +..+.+... ...+.+++++||++|
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~---~~~~~~~~~--~~~~~~v~~iSA~~g 157 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---ENLEAFKEK--LTDDYPVFPISAVTR 157 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HHHHHHHHH--CCSCCCBCCCSSCCS
T ss_pred hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH---HHHHHHHHH--hccCCcEEEEECCCC
Confidence 99999876543221 111 112222233344568999999999986532 211222111 123557999999999
Q ss_pred CCHHHHHHHHHHhhhccC
Q 030113 164 DGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~~~ 181 (183)
.|++++++++.+.+.+.+
T Consensus 158 ~Gi~~L~~~i~~~L~~~p 175 (185)
T d1lnza2 158 EGLRELLFEVANQLENTP 175 (185)
T ss_dssp STTHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHhhhhCC
Confidence 999999999999987654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.90 E-value=1.5e-23 Score=142.13 Aligned_cols=157 Identities=18% Similarity=0.100 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeE------------------EEEEcCeEEEEEEcCCChhhHh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVE------------------ELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~------------------~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
..|+|+|++++|||||+++|++...... ..+...... .+..+..++.++||||+..|..
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~ 85 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT 85 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence 3499999999999999999976432110 001110111 1223456899999999999988
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH---H---------------
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA---E--------------- 138 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~---~--------------- 138 (183)
.+...+..+|++|+|+|+.++-.... ...+..+.. .++|+++++||+|+....... .
T Consensus 86 ~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (227)
T d1g7sa4 86 LRKRGGALADLAILIVDINEGFKPQT-QEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK 160 (227)
T ss_dssp SBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH
T ss_pred cchhcccccceEEEEEecccCcccch-hHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH
Confidence 88888999999999999987643222 222222222 468999999999986532110 0
Q ss_pred HH-------hhcCc----------CccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 139 IT-------DALSL----------HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 139 ~~-------~~~~~----------~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.. ..+.. ........+++++||++|.|++++++.+.....+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~ 218 (227)
T d1g7sa4 161 LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (227)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 00 00000 0001245689999999999999999998876644
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=1.3e-22 Score=135.11 Aligned_cols=143 Identities=19% Similarity=0.177 Sum_probs=99.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC--------Ccc------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG--------EVV------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~--------~~~------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
++.++|+++|++++|||||+++|+.. ... +...|.......+.+++.++.++||||+.+|
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 35799999999999999999999521 000 0134556666778889999999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCC-HH----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMT-PA----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 148 (183)
...+...+..+|++|+|+|+.++-.... ...|..... .++| +++++||+|+.+... .. ++...+.....
T Consensus 81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 155 (204)
T d2c78a3 81 IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 155 (204)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988754433 233333322 2454 778899999865321 12 22233322222
Q ss_pred CCCceEEEEeeccc
Q 030113 149 KNHDWHIQACSALT 162 (183)
Q Consensus 149 ~~~~~~~~~~S~~~ 162 (183)
.....++++.|+..
T Consensus 156 ~~~~i~~i~~sa~~ 169 (204)
T d2c78a3 156 PGDEVPVIRGSALL 169 (204)
T ss_dssp CTTTSCEEECCHHH
T ss_pred Ccccceeeeeechh
Confidence 33556789988864
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.87 E-value=6.4e-21 Score=128.08 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=101.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC--c-c---------------------------------cccCcccceeEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE--V-V---------------------------------TTHPTVGSNVEELV 57 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~--~-~---------------------------------~~~~~~~~~~~~~~ 57 (183)
++..++|+++|+.++|||||+.+|+... . . ....+.......+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 4567999999999999999999995211 0 0 01122223344455
Q ss_pred EcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCC-CeEEEEEeCCCCCCCCCH
Q 030113 58 YKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQH-SVVLIFANKQDLKDAMTP 136 (183)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~vilv~nK~Dl~~~~~~ 136 (183)
....++.++|+||+..|...+...+..+|++++|+|+.++..-. ....+..... .+ ..+++++||+|+.+....
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~----~gv~~iiv~vNK~D~~~~~~~ 160 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL----LGIKHIVVAINKMDLNGFDER 160 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEECTTTTTSCHH
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHHHH----cCCCEEEEEEEccccccccce
Confidence 57789999999999999999999999999999999998774332 2222222222 23 458999999999764321
Q ss_pred --H----HHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 137 --A----EITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 137 --~----~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
. ++...+.........++++++||.+|+|+.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 161 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 1 222222223333467889999999999883
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1.5e-21 Score=134.43 Aligned_cols=111 Identities=23% Similarity=0.177 Sum_probs=86.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC--Cc-------------------ccccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG--EV-------------------VTTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
+-.+|+++|+.++|||||+.+++.. .. .....++......+.+++.++.++||||+.+|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 4457999999999999999998521 10 01234566667788999999999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.......++-+|++|+|+|+.++-... ....|..... .++|.++++||+|..
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~Gv~~~-T~~~w~~a~~----~~lP~i~fINKmDr~ 136 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQGVEPQ-SETVWRQAEK----YKVPRIAFANKMDKT 136 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTSSCHH-HHHHHHHHHT----TTCCEEEEEECTTST
T ss_pred HHHHHHHHHhhhheEEeccccCCcchh-HHHHHHHHHH----cCCCEEEEEeccccc
Confidence 999999999999999999999874332 2233444433 479999999999986
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.1e-20 Score=123.63 Aligned_cols=159 Identities=21% Similarity=0.086 Sum_probs=101.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc---Cccc-ceeEEEEEcCeEEEEEEcCCChhhHhh---------HHhhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH---PTVG-SNVEELVYKNIRFEAWDVGGQERLRTS---------WATYY 82 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~---------~~~~~ 82 (183)
..-.|+++|.+|||||||+|+|.+....... .+.. ............+..+|++|....... .....
T Consensus 4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
T d1egaa1 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 83 (179)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccch
Confidence 3446899999999999999999987643222 2222 223344456778888899885432111 11223
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
..++.++++.|.++.... ...+...+.. ...|.++++||.|+.... .+...............+++++||++
T Consensus 84 ~~~~~~l~~~d~~~~~~~--~~~~~~~l~~----~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~~~~~~~~~~vSA~~ 155 (179)
T d1egaa1 84 GDVELVIFVVEGTRWTPD--DEMVLNKLRE----GKAPVILAVNKVDNVQEK--ADLLPHLQFLASQMNFLDIVPISAET 155 (179)
T ss_dssp CCEEEEEEEEETTCCCHH--HHHHHHHHHS----SSSCEEEEEESTTTCCCH--HHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred hhcceeEEEEecCccchh--HHHHHHHhhh----ccCceeeeeeeeeccchh--hhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence 456888888988765322 2222223322 346789999999976542 22222222222233456899999999
Q ss_pred CCCHHHHHHHHHHhhhccCC
Q 030113 163 GDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~~~ 182 (183)
|.|+++++++|.+.+++.++
T Consensus 156 g~gi~~L~~~i~~~lpe~~~ 175 (179)
T d1egaa1 156 GLNVDTIAAIVRKHLPEATH 175 (179)
T ss_dssp TTTHHHHHHHHHTTCCBCCC
T ss_pred CCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999987754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=3e-21 Score=129.23 Aligned_cols=119 Identities=25% Similarity=0.267 Sum_probs=84.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhh----ccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATY----YRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~d~ii~v 91 (183)
.+.+|+++|++|+|||||+|+|.++.+.+.. +.......+..++..+.+||+||+......+..+ ...++.++++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~t-t~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCeE-EecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 4568999999999999999999988765432 2223334455577889999999998766555444 4556899999
Q ss_pred EeCCC-cccHHHHHHHHHHHh---CCCCCCCCeEEEEEeCCCCCCCCC
Q 030113 92 IDSTD-RARISIMKDELFRLL---GHEDLQHSVVLIFANKQDLKDAMT 135 (183)
Q Consensus 92 ~d~~~-~~s~~~~~~~~~~~~---~~~~~~~~~vilv~nK~Dl~~~~~ 135 (183)
+|+.+ ..++.....++.... ......+.|+++++||+|+.+...
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 99874 445566655543332 223346799999999999876443
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.84 E-value=1.7e-19 Score=123.75 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC--cc-------------------cccCcccceeEEEEEcCeEEEEEEcCCChhhHh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE--VV-------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
.+|+|+|+.++|||||+.+++... .. ....++......+.+++.++.++||||+.+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence 369999999999999999984211 00 122356666778889999999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.+...++-+|++++|+|+.++-..... ..|..... .++|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~~~t~-~~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhhcccCceEEEeeccCCccchhH-HHHHhhhh----ccccccccccccccc
Confidence 999999999999999999977443332 33333322 468999999999974
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=2.1e-20 Score=126.89 Aligned_cols=149 Identities=13% Similarity=0.132 Sum_probs=103.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc---C-------------------Cc------------ccccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL---G-------------------EV------------VTTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~---~-------------------~~------------~~~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|+.++|||||+.+|+. . .+ .+...|+......+.+.
T Consensus 3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~ 82 (239)
T d1f60a3 3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 82 (239)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence 34568999999999999999998852 1 00 01234666677788889
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccH------HHHHHHHHHHhCCCCCCC-CeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARI------SIMKDELFRLLGHEDLQH-SVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~-~~vilv~nK~Dl~~ 132 (183)
+.++.++||||+.+|...+...+..+|++|+|+|+.+...- ......+..... .+ .++++++||+|+.+
T Consensus 83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~ 158 (239)
T d1f60a3 83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 158 (239)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCC
Confidence 99999999999999999999999999999999999865210 112233322222 23 45888999999875
Q ss_pred CCCH------HHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 133 AMTP------AEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 133 ~~~~------~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
.... .++...+.........++++++|+..|.|+
T Consensus 159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence 4321 122222222222234577999999999886
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.83 E-value=4.7e-20 Score=124.47 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=97.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--c--------------------------------ccccCcccceeEEEEEcC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--V--------------------------------VTTHPTVGSNVEELVYKN 60 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~--------------------------------~~~~~~~~~~~~~~~~~~ 60 (183)
++.++|+++|+.++|||||+.+|+... . .....+.......+.+++
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 80 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 80 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence 357899999999999999999884210 0 011123334445566788
Q ss_pred eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccH------HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARI------SIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~ 134 (183)
..+.++||||+.+|...+...+.-+|++++|+|+.++..- ......+...... ...++++++||+|+....
T Consensus 81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~iNK~D~~~~~ 157 (224)
T d1jnya3 81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEPP 157 (224)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSST
T ss_pred ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEEEEcccCCCcc
Confidence 9999999999999999999999999999999999986211 1122222222111 224688999999986532
Q ss_pred CHH--------HHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 135 TPA--------EITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 135 ~~~--------~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
... ++.+.+..........+++++||..|.|+.+
T Consensus 158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 211 1222222222334577899999999999854
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=5.4e-19 Score=116.04 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=89.6
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCccc---ceeE-EEEEcCeEEEEEEcCCC------h--hhHhh
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG---SNVE-ELVYKNIRFEAWDVGGQ------E--RLRTS 77 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~D~~g~------~--~~~~~ 77 (183)
+.......++|+++|.+|+|||||+|++.+..........+ .... .....+......+.++. . .....
T Consensus 9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (188)
T d1puia_ 9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA 88 (188)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence 44556778999999999999999999998876533222111 1111 12223333333333321 1 11111
Q ss_pred ---HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc-cCCCce
Q 030113 78 ---WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS-IKNHDW 153 (183)
Q Consensus 78 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~ 153 (183)
..........++.+.+......... ..++..... ...++++++||+|+.+........+.+.... ......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (188)
T d1puia_ 89 LGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 163 (188)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred hhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence 1122234456666666665433222 233333322 3578999999999876544333332222211 123456
Q ss_pred EEEEeecccCCCHHHHHHHHHHhh
Q 030113 154 HIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+++++||++|.|++++++.|.+.+
T Consensus 164 ~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 164 QVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHh
Confidence 899999999999999999987643
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.80 E-value=3.6e-20 Score=126.29 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=91.5
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhcc---CCcc-------------------------------cccCccccee
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHL---GEVV-------------------------------TTHPTVGSNV 53 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~---~~~~-------------------------------~~~~~~~~~~ 53 (183)
..+....++.++|+++|+.++|||||+.+|+. .... ....+.....
T Consensus 15 ~~~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~ 94 (245)
T d1r5ba3 15 LLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR 94 (245)
T ss_dssp THHHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C
T ss_pred HHHHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccc
Confidence 34445567789999999999999999999942 1000 0112222333
Q ss_pred EEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccH-----H-HHHHHHHHHhCCCCCCCCeEEEEEeC
Q 030113 54 EELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARI-----S-IMKDELFRLLGHEDLQHSVVLIFANK 127 (183)
Q Consensus 54 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-----~-~~~~~~~~~~~~~~~~~~~vilv~nK 127 (183)
..+.+...++.++|+||+..|...+......+|++++|+|+.++..- . .....+...... .-.++++++||
T Consensus 95 ~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNK 171 (245)
T d1r5ba3 95 AYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINK 171 (245)
T ss_dssp CEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEEC
T ss_pred cccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEc
Confidence 34555778999999999999999999999999999999999875211 0 122222222211 12348899999
Q ss_pred CCCCCCCC----HHHHHhhcCcC----c--cCCCceEEEEeecccCCCHHHHHH
Q 030113 128 QDLKDAMT----PAEITDALSLH----S--IKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 128 ~Dl~~~~~----~~~~~~~~~~~----~--~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+|+..... ..++.+.+... . .....++++++||++|+|+.++++
T Consensus 172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 99864332 12222222111 0 012357899999999999987643
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=4.8e-16 Score=112.81 Aligned_cols=156 Identities=9% Similarity=-0.008 Sum_probs=90.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc----ccCccccee--EEEEE-cCeEEEEEEcCCChhhHh-----hHHhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNV--EELVY-KNIRFEAWDVGGQERLRT-----SWATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~--~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~ 83 (183)
..++|+|+|.+|+|||||+|+|.|..... .....+++. ..+.. ...++.+|||||-..... .....+.
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~ 134 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 134 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence 56999999999999999999998744211 111111111 22222 345689999999543221 1222356
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC---------CCHHH----H----HhhcCcC
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA---------MTPAE----I----TDALSLH 146 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~---------~~~~~----~----~~~~~~~ 146 (183)
.+|.++++.|..-...-..+ +..+ .. .++|+++|.||+|.... ..... + ...+...
T Consensus 135 ~~d~~l~~~~~~~~~~d~~l---~~~l-~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~ 207 (400)
T d1tq4a_ 135 EYDFFIIISATRFKKNDIDI---AKAI-SM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 207 (400)
T ss_dssp GCSEEEEEESSCCCHHHHHH---HHHH-HH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEecCCCCCHHHHHH---HHHH-HH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence 78999888875432211122 2222 21 36899999999995310 11111 1 1122211
Q ss_pred ccCCCceEEEEeeccc--CCCHHHHHHHHHHhhhcc
Q 030113 147 SIKNHDWHIQACSALT--GDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~~--~~gi~~~~~~i~~~~~~~ 180 (183)
.....++|.+|..+ ..|+.++.+++.+.+.+.
T Consensus 208 --~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~ 241 (400)
T d1tq4a_ 208 --GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 241 (400)
T ss_dssp --TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred --CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence 12344688888765 458999999998887653
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=7.9e-16 Score=108.74 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=78.9
Q ss_pred CCcce-EEEEEcCCCCCHHHHHHHhccCC--cc-----------------cccCcccceeEEEEE---------------
Q 030113 14 PGKDY-KIIIVGLDNAGKTTTLYKLHLGE--VV-----------------TTHPTVGSNVEELVY--------------- 58 (183)
Q Consensus 14 ~~~~~-~i~viG~~~~GKStl~~~l~~~~--~~-----------------~~~~~~~~~~~~~~~--------------- 58 (183)
....+ +|+|+|+.++|||||+.+++... .. +...|+......+.+
T Consensus 13 ~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~ 92 (341)
T d1n0ua2 13 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 92 (341)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccc
Confidence 33445 59999999999999999995210 00 011233333333322
Q ss_pred -cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 59 -KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 59 -~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
+...+.++||||+.+|.......++-+|++++|+|+.++-..... ..+..... .+.|+++++||+|.
T Consensus 93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~----~~~p~i~viNKiDr 160 (341)
T d1n0ua2 93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG----ERIKPVVVINKVDR 160 (341)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCEEEEEEECHHH
T ss_pred ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHH----cCCCeEEEEECccc
Confidence 346799999999999999999999999999999999987544333 23333333 35899999999995
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.62 E-value=1.4e-14 Score=99.21 Aligned_cols=117 Identities=9% Similarity=0.108 Sum_probs=78.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYY 82 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 82 (183)
....++|+++|.+|+|||||+|++++...... ..|...........+..+.++||||-.+ .......+.
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~ 108 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 108 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence 35779999999999999999999998764432 2344455566677889999999999421 112222222
Q ss_pred --cCCCEEEEEEeCCCcc-c--HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 83 --RGTHAVIVVIDSTDRA-R--ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 83 --~~~d~ii~v~d~~~~~-s--~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...|++++|++++... + -......+...+... ...++++|+||+|...
T Consensus 109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP 161 (257)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence 3458999999886532 1 222334444444321 2357899999999864
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=4.7e-15 Score=104.45 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=89.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc------CCcc-----cccCcc------------------cceeEEEEE------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL------GEVV-----TTHPTV------------------GSNVEELVY------ 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~------~~~~-----~~~~~~------------------~~~~~~~~~------ 58 (183)
..+.++|+|.|+||+|||||++++.. .... +.++.. +........
T Consensus 51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg 130 (327)
T d2p67a1 51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 130 (327)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence 46789999999999999999999952 1110 111100 011111000
Q ss_pred --------------cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q 030113 59 --------------KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124 (183)
Q Consensus 59 --------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv 124 (183)
.+..+.+++|.|.-.... .+...+|.+++|.++...+........+.++. -++|
T Consensus 131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~a---------Di~V 198 (327)
T d2p67a1 131 ASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEVA---------DLIV 198 (327)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHHC---------SEEE
T ss_pred chhhhhHHHHHHHhcCCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhccc---------cEEE
Confidence 034677778876433222 34567899999998876654444444444442 2789
Q ss_pred EeCCCCCCCCCHH----HHHhhcCc--CccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 125 ANKQDLKDAMTPA----EITDALSL--HSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 125 ~nK~Dl~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+||+|+....... +....+.. ........+++.|||.+|+|++++++.|.+...
T Consensus 199 vNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 199 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 9999986532221 11211111 112234568999999999999999999987553
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.57 E-value=3.1e-14 Score=100.15 Aligned_cols=154 Identities=20% Similarity=0.171 Sum_probs=92.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccC------Cc-----ccccC----------------cccceeEEEEE-------
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLG------EV-----VTTHP----------------TVGSNVEELVY------- 58 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~------~~-----~~~~~----------------~~~~~~~~~~~------- 58 (183)
...+.++|.|.|+||+|||||++++... .. .+.++ ..+.....-..
T Consensus 47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g 126 (323)
T d2qm8a1 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 126 (323)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccccc
Confidence 4467899999999999999999998531 00 00010 00011111000
Q ss_pred ---------------cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q 030113 59 ---------------KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123 (183)
Q Consensus 59 ---------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vil 123 (183)
.+..+.++.|.|.-..... ...-+|..++|..+..++.......-+.++ .-++
T Consensus 127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---------aDi~ 194 (323)
T d2qm8a1 127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFEL---------ADMI 194 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHH---------CSEE
T ss_pred chhHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhh---------hhee
Confidence 1468889999885443333 234589999999998775544333333333 2389
Q ss_pred EEeCCCCCCCCCHHH-H----HhhcCcC--ccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 124 FANKQDLKDAMTPAE-I----TDALSLH--SIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 124 v~nK~Dl~~~~~~~~-~----~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
|+||+|+........ . ...+... .......+++.+||++++|+++++++|.+...
T Consensus 195 vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 195 AVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 999999865533221 1 1112111 11234567999999999999999999987654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.55 E-value=1.1e-15 Score=103.94 Aligned_cols=113 Identities=15% Similarity=-0.022 Sum_probs=66.9
Q ss_pred eEEEEEEcCCChhhHhhHHhh---c--cCCCEEEEEEeCCCcccHHHHH-HHHH--HHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSWATY---Y--RGTHAVIVVIDSTDRARISIMK-DELF--RLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~---~--~~~d~ii~v~d~~~~~s~~~~~-~~~~--~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
..+.++|+||+.......... . ...+.+++++|+.....-.... ..+. ..... ...|.++++||+|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS 171 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence 468999999997754432221 1 2457899999986433222111 1111 11111 2478999999999876
Q ss_pred CCCHHHHHh----------hcCcC---------------ccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 133 AMTPAEITD----------ALSLH---------------SIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 133 ~~~~~~~~~----------~~~~~---------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
......... ..... ......++++++||++|+|++++++.|.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 432211110 00000 001245679999999999999999998775
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=7.1e-11 Score=82.33 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=70.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc--Cccc-ceeEEEE-----------------------------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVG-SNVEELV----------------------------------- 57 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~--~~~~-~~~~~~~----------------------------------- 57 (183)
...+|+|+|..++|||||+|+|++.++.+.. ++.. .....+.
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 4468999999999999999999998753321 2111 1110100
Q ss_pred ----------------E-cCeEEEEEEcCCCh-------------hhHhhHHhhccCCCEE-EEEEeCCCcccHHHHHHH
Q 030113 58 ----------------Y-KNIRFEAWDVGGQE-------------RLRTSWATYYRGTHAV-IVVIDSTDRARISIMKDE 106 (183)
Q Consensus 58 ----------------~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~i-i~v~d~~~~~s~~~~~~~ 106 (183)
. ....+.++|+||-. ........|+...+.+ ++|.++....+-.....+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence 0 12358899999931 1234556777777755 456666554443344444
Q ss_pred HHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 107 LFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 107 ~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
...+.. ...++++|+||+|..++
T Consensus 185 ~~~~~~----~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 AKEVDP----QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHCT----TCSSEEEEEECGGGSCT
T ss_pred HHHhCc----CCCceeeEEeccccccc
Confidence 444322 34679999999998654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.20 E-value=5.3e-11 Score=83.26 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=42.5
Q ss_pred eEEEEEEcCCChh-------------hHhhHHhhccCCCEEEEEE-eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q 030113 61 IRFEAWDVGGQER-------------LRTSWATYYRGTHAVIVVI-DSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126 (183)
Q Consensus 61 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~n 126 (183)
..+.++|+||-.. ....+..|+..++.+++++ +......-.....+...+ .. ...++++|+|
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~~---~~~r~i~Vit 206 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVIT 206 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEEE
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh-Cc---CCCeEEEEEe
Confidence 4688999999321 2356677888999876665 443322222233333333 21 3468999999
Q ss_pred CCCCCCC
Q 030113 127 KQDLKDA 133 (183)
Q Consensus 127 K~Dl~~~ 133 (183)
|+|..+.
T Consensus 207 k~D~~~~ 213 (306)
T d1jwyb_ 207 KLDLMDK 213 (306)
T ss_dssp CTTSSCS
T ss_pred ccccccc
Confidence 9998644
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.18 E-value=5.2e-11 Score=82.90 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=59.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc--c--ccCcccceeEEEEEc-----------------CeEEEEEEcCCC--
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV--T--THPTVGSNVEELVYK-----------------NIRFEAWDVGGQ-- 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~--~--~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~-- 71 (183)
...++|+++|.|+||||||++++.+...+ . ...|+..+...+... ...+++.|+||-
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 46689999999999999999999865432 2 233444444444443 357899999982
Q ss_pred -----hhhHhhHHhhccCCCEEEEEEeCCC
Q 030113 72 -----ERLRTSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 72 -----~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (183)
..........++.+|+++.|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 2234566777899999999999865
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.16 E-value=3.7e-11 Score=84.55 Aligned_cols=79 Identities=29% Similarity=0.290 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc-------cccCcccceeEEEE--------------------EcCeEEEEEEcCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-------TTHPTVGSNVEELV--------------------YKNIRFEAWDVGG 70 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~-------~~~~~~~~~~~~~~--------------------~~~~~~~~~D~~g 70 (183)
.+|+++|.||||||||+|++.+.... ...|..|+...... .....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 47999999999999999999875421 11222232221111 1235799999999
Q ss_pred Chh-------hHhhHHhhccCCCEEEEEEeCCC
Q 030113 71 QER-------LRTSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 71 ~~~-------~~~~~~~~~~~~d~ii~v~d~~~ 96 (183)
--. ........++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 322 22333344678999999999864
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.16 E-value=4e-11 Score=82.80 Aligned_cols=79 Identities=27% Similarity=0.301 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEc-----------------CeEEEEEEcCCC-----
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYK-----------------NIRFEAWDVGGQ----- 71 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~----- 71 (183)
.+||+++|.|+||||||++++.+..... ...|...+...+... ...+.++|+||-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 4799999999999999999998655321 123333333334332 246889999993
Q ss_pred --hhhHhhHHhhccCCCEEEEEEeCC
Q 030113 72 --ERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 72 --~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
..........++++|+++.|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 223445677789999999999874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.01 E-value=1.9e-10 Score=79.14 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=38.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCCC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQ 71 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~ 71 (183)
.....++|+|+|.||||||||+|++.+.....+++..|++...... .+.++.++||||-
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi 167 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGI 167 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeEEecCCCc
Confidence 4567899999999999999999999998877777766655432222 3457899999993
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.62 E-value=2e-08 Score=68.79 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=65.4
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCc
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHD 152 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (183)
+....+...++.+|++++|+|+.+|.+.. ...+..++. ++|.++|.||+|+.+.....+..+.+.. ..
T Consensus 4 ka~r~i~~~i~~~DvIl~V~DaR~P~ss~--~~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~-----~~ 71 (273)
T d1puja_ 4 KARREVTEKLKLIDIVYELVDARIPMSSR--NPMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFEN-----QG 71 (273)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTS--CHHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHHT-----TT
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCCC--CHHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHHh-----cC
Confidence 34455667789999999999998875432 233444432 5899999999999865444444444332 23
Q ss_pred eEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 153 WHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 153 ~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
...+.+|+.++.+..++.+.+.+.+.
T Consensus 72 ~~~i~isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 72 IRSLSINSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CccceeecccCCCccccchhhhhhhh
Confidence 45899999999998888777665544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=7.4e-08 Score=63.89 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=46.6
Q ss_pred EEEEEEcCCChhhHhhHHhh--------ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 62 RFEAWDVGGQERLRTSWATY--------YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
...++.+.|...-....... .-..++++.|+|+............+...+... =++++||+|+.++
T Consensus 91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A------D~ivlNK~Dl~~~ 164 (222)
T d1nija1 91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAGE 164 (222)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTC------SEEEEECTTTCSC
T ss_pred ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhC------CcccccccccccH
Confidence 44677777754433322211 123588999999977643222222232322222 1789999999764
Q ss_pred CCHHHHHhhcCcCccCCCceEEEEee
Q 030113 134 MTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
. +.+.+.+.. -++.+++++++
T Consensus 165 ~--~~~~~~l~~---lNP~a~Ii~~~ 185 (222)
T d1nija1 165 A--EKLHERLAR---INARAPVYTVT 185 (222)
T ss_dssp T--HHHHHHHHH---HCSSSCEEECC
T ss_pred H--HHHHHHHHH---HhCCCeEEEee
Confidence 2 344444332 24555677665
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=3.6e-08 Score=65.01 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccC---------cccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHP---------TVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
-..+++|++|||||||+|+|.+.....+.. .......-+.... .-.++||||...+
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~-gg~iiDTPG~r~~ 160 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF-GGYVVDTPGFANL 160 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT-SCEEESSCSSTTC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC-CcEEEeCCccccc
Confidence 466899999999999999998765332211 1111122233332 3578999996543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.46 E-value=3.7e-07 Score=59.54 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=37.9
Q ss_pred CeEEEEEEcCCChhhH----hhHHhhc--------cCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEe
Q 030113 60 NIRFEAWDVGGQERLR----TSWATYY--------RGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFAN 126 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~----~~~~~~~--------~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~n 126 (183)
+..+.++||+|..... ..+..+. ...+-.++|+|++.... ...+...+..+ .. --++.|
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~~-------~~lI~T 159 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-GL-------TGVIVT 159 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-CC-------SEEEEE
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-CC-------ceEEEe
Confidence 4688999999943221 1121111 24578899999986543 33333333333 22 257899
Q ss_pred CCCCCC
Q 030113 127 KQDLKD 132 (183)
Q Consensus 127 K~Dl~~ 132 (183)
|.|...
T Consensus 160 KlDet~ 165 (207)
T d1okkd2 160 KLDGTA 165 (207)
T ss_dssp CTTSSC
T ss_pred ccCCCC
Confidence 999643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=6.5e-08 Score=63.41 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=22.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhc
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.+.++..|+++|++|+||||.+-+|+
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 45677788999999999999988775
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=1.4e-07 Score=62.07 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=59.3
Q ss_pred hccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 81 YYRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
...+.|.+++|+.+.+|. +..-+..++..... .+++.+||+||+||.++.......+.... ....++++.+|
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~---~~~~~~v~~vS 79 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI---YSGLYPIVKTS 79 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH---HTTTSCEEECC
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcc---cccceeEEEec
Confidence 357889999999988764 34445555554433 46899999999999764333333222221 12235699999
Q ss_pred cccCCCHHHHHHHHH
Q 030113 160 ALTGDGLVDGLEWIS 174 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~ 174 (183)
++++.|++++.+++.
T Consensus 80 a~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 80 AKTGMGIEELKEYLK 94 (225)
T ss_dssp TTTCTTHHHHHHHHS
T ss_pred cccchhHhhHHHHhc
Confidence 999999999988763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.37 E-value=3e-07 Score=60.01 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=39.1
Q ss_pred CeEEEEEEcCCChhh----HhhHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...+.++||+|.... ...+..+ ..+.+-+++|.|++....-......+...+.. --+++||.|-..
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~-------~~~I~TKlDe~~ 163 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV-------TGLVLTKLDGDA 163 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCC-------CEEEEECGGGCS
T ss_pred cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCC-------CeeEEeecCccc
Confidence 458899999994332 2222222 24568999999997664332333333333222 248899999643
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=4.7e-07 Score=59.10 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=20.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.+...-|+++|++|+||||.+-+|.
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3455678899999999999998885
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.32 E-value=5.5e-07 Score=58.83 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=16.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
+.+.-|+++|++|+||||.+-+|+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455667889999999999988875
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.28 E-value=1.3e-07 Score=62.48 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
-..+++|++|+|||||+|+|.+..
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred ceEEEECCCCccHHHHHHhhccHh
Confidence 345799999999999999998865
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=1e-07 Score=62.97 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=58.5
Q ss_pred ccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 82 YRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
..+.|.+++|+++.+|. ++.-+..++..... .+++.+||+||+||.+.....+..+.+... ....+++++.+|+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~-y~~~g~~v~~~Sa 82 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAED-YRNIGYDVYLTSS 82 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHH-HHHHTCCEEECCH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHHH-Hhhccccceeeec
Confidence 57889999999987764 45555555555533 468999999999997653322222211111 1223567999999
Q ss_pred ccCCCHHHHHHHH
Q 030113 161 LTGDGLVDGLEWI 173 (183)
Q Consensus 161 ~~~~gi~~~~~~i 173 (183)
+++.|++++.+++
T Consensus 83 ~~~~gl~~L~~~l 95 (231)
T d1t9ha2 83 KDQDSLADIIPHF 95 (231)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CChhHHHHHHHhh
Confidence 9999998887654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.16 E-value=4.2e-07 Score=57.79 Aligned_cols=23 Identities=43% Similarity=0.465 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.||+|+|++|+|||||++.+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 48999999999999999999763
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=98.02 E-value=1.7e-06 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+..+|++.|++||||||+.+.|..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 35778999999999999999999964
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.99 E-value=1.2e-06 Score=55.81 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-+|+|.|++|+|||||+++|+.
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.93 E-value=1.9e-06 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+|+|+|++||||||++++|+.
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.90 E-value=4.2e-06 Score=53.92 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+...|+|+|+|||||||++++|+.
T Consensus 3 ~~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 3 KSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556789999999999999999864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.90 E-value=3.8e-06 Score=54.01 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+.+.++|+|+|+|||||||+...|+..
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 467789999999999999999999653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.89 E-value=3.6e-06 Score=54.09 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.++|+++|+|||||||++..|+.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=3e-05 Score=52.72 Aligned_cols=58 Identities=21% Similarity=0.068 Sum_probs=41.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc--c----ccCcccceeEEEEE---cCeEEEEEEcCCC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV--T----THPTVGSNVEELVY---KNIRFEAWDVGGQ 71 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~--~----~~~~~~~~~~~~~~---~~~~~~~~D~~g~ 71 (183)
..+..-|.|+|+.++|||+|+|.+++.... - ...|.|+-.+.... ....+.++||.|-
T Consensus 29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~ 95 (277)
T d1f5na2 29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 95 (277)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence 345668899999999999999999886531 1 23566655444433 4568999999984
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.84 E-value=3.5e-06 Score=54.08 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
++.+|+|+|++||||||++..|+.
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998854
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=4.1e-06 Score=52.53 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-++|+|++|||||||++++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999974
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.82 E-value=4.8e-06 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+|+|+|+|||||||++..|+.
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=6.8e-06 Score=52.31 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+|+|+|+|||||||+.+.|+.
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.74 E-value=7.6e-06 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+|+|+|+|||||||++..|+..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.73 E-value=7.6e-06 Score=50.37 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHhcc
Q 030113 20 IIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~ 39 (183)
|++.|++||||||+++++..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999998854
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=8.6e-06 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+|+|+|+|||||||+++.|+.
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.72 E-value=8e-06 Score=51.24 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-|+|.|++||||||++++|..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999864
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.70 E-value=1.4e-05 Score=50.44 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.+.+-|.++|.+||||||+.+.|..
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45668899999999999999988853
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=1e-05 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+|+++|+|||||||..+.|+.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988853
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.68 E-value=2.3e-05 Score=50.15 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.3
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhc
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
...+...+-|+|-|++|||||||+++|.
T Consensus 16 ~~~~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 16 AIKTAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp TSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred hccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3566778889999999999999999885
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=1.4e-05 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.134 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=+++|+|++|+|||||++.+.+-.
T Consensus 29 Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 29 GEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578999999999999999997754
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=3.7e-05 Score=51.85 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=27.7
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
......+..+..-+++++|++|+|||++++.++..
T Consensus 28 ~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 28 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHH
Confidence 34455566677789999999999999999888653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.64 E-value=1.9e-05 Score=53.31 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.-|++.|+||+|||||++++++.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 44889999999999999999654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=1.5e-05 Score=51.16 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
++.|+|+|+|||||||.+..|+.
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999988854
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.63 E-value=1.2e-05 Score=50.42 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHhcc
Q 030113 20 IIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~ 39 (183)
+.|+|.+|||||||++++..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999998864
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.61 E-value=2.2e-05 Score=50.51 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.+...|+|+|+|||||||++..|+.
T Consensus 4 ~~~~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 4 SPDQVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345566788999999999999999965
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.61 E-value=1.9e-05 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|+.|+|||||++.+++-..
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~~ 52 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYLK 52 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcccc
Confidence 468999999999999999987543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=1.4e-05 Score=49.55 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+++|++||||||+...|+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.60 E-value=1.7e-05 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|++|||||||++.+++-.
T Consensus 42 e~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCChHHHHHHHHhccc
Confidence 478999999999999999997644
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.59 E-value=2.7e-05 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
+.=.++|+|++|+|||||++.+.+-.
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 33578999999999999999997644
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.59 E-value=2.5e-05 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
....-|+++|.+||||||++.+++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556778999999999999998854
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.59 E-value=2.1e-05 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|||||||++.+.+-.
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCcchhhHhccCCC
Confidence 357899999999999999987754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=1.3e-05 Score=50.17 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~ 38 (183)
.+|+++|.+||||||+.+.+.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 468899999999999988874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=2.1e-05 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
+.=.++|+|++|+|||||++.+.+-.
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhccc
Confidence 33578999999999999999997654
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=2.3e-05 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|||||||++.+.+-.
T Consensus 27 ei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 357899999999999999997644
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=1.9e-05 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998863
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.53 E-value=2.3e-05 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
-|++.|++||||||+.+.+...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3778899999999999998654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.53 E-value=2.1e-05 Score=51.03 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-|+++|.|||||||++++|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3478899999999999999964
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.53 E-value=2.4e-05 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++|+|+.|+|||||++.+++-.
T Consensus 62 Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 62 GEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3568999999999999999998754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.53 E-value=2.2e-05 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
-++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 45789999999999999997754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=3.6e-05 Score=48.14 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=20.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...-++++|++||||||+.++|..
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445566789999999999999854
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.49 E-value=3.2e-05 Score=50.64 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.++|+|-||+||||||...+|+.
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=2.7e-05 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=-++++|++|||||||++.+.+-.
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHcCCc
Confidence 357899999999999999997754
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.48 E-value=2.3e-05 Score=48.88 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+++|++||||||+...++.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999888853
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.48 E-value=3.3e-05 Score=51.15 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++++|++|+|||||++.+.+-..
T Consensus 33 e~~~liGpsGaGKSTLl~~i~Gl~~ 57 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAGLEE 57 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3578999999999999999977543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.48 E-value=2.4e-05 Score=52.43 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=+++|+|++|+|||||++.+.+-.
T Consensus 44 Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 44 GETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcC
Confidence 3578999999999999999987644
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.47 E-value=2.8e-05 Score=49.27 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHhc
Q 030113 19 KIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~ 38 (183)
-|+|.|++||||||++++|.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999999884
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.47 E-value=3.6e-05 Score=51.03 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++++|+.|+|||||++.+.+-..
T Consensus 30 e~~~liG~sGaGKSTll~~i~gl~~ 54 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 3578999999999999999987654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=6.5e-05 Score=48.07 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
......+..+..-+++++|++|+|||++++.++.
T Consensus 32 ~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEEecCCcccHHHHHHHHH
Confidence 3444556666777899999999999999988865
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.45 E-value=6.2e-05 Score=50.24 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=22.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.......|++.|++|+|||+++++++.
T Consensus 36 ~~~p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 36 DRTPLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHhh
Confidence 334456799999999999999999965
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.44 E-value=3.5e-05 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
-++++|+.|+|||||++.+.+-..
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~~ 57 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 568999999999999999987643
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.43 E-value=1.9e-05 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
-++++|+.|||||||++.+.+-..
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~~ 51 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFHV 51 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Confidence 478999999999999999987543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=97.43 E-value=0.00065 Score=41.78 Aligned_cols=62 Identities=24% Similarity=0.194 Sum_probs=38.3
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCc---ccccCcccceeEEEEEcCeEEEEEEc
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV---VTTHPTVGSNVEELVYKNIRFEAWDV 68 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~ 68 (183)
++.+.....++..-|++-|+-|+|||||++.++..-- .-.+||... ...+......+.-+|.
T Consensus 22 a~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~~~~~~i~H~Dl 86 (158)
T d1htwa_ 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYNIAGKMIYHFDL 86 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEEETTEEEEEEEC
T ss_pred HHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE-EEeeccCCceEEEEEE
Confidence 3334334456677889999999999999998865432 223444433 2334445555655665
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.41 E-value=4.8e-05 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.194 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
=-++++|+.|+|||||++.+.+-..+
T Consensus 29 ei~glvG~nGaGKSTLl~~l~G~~~p 54 (238)
T d1vpla_ 29 EIFGLIGPNGAGKTTTLRIISTLIKP 54 (238)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35689999999999999999876543
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.39 E-value=4.7e-05 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..-|+++|+|||||||++.+|+.
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999965
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.39 E-value=4e-05 Score=48.89 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+|+||+|||||||+++|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998653
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.39 E-value=4.1e-05 Score=48.00 Aligned_cols=22 Identities=32% Similarity=0.301 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
-|++.|++||||||+.+.|...
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3567799999999999998653
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=2.8e-05 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
=-++++|+.|+|||||++.+.+-
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999874
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=8.5e-05 Score=51.09 Aligned_cols=32 Identities=31% Similarity=0.210 Sum_probs=25.7
Q ss_pred HHhhhcCCCcceEEEEEcCCCCCHHHHHHHhc
Q 030113 7 KFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 7 ~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.|+.....+.++-|+|.|++|||||||.+.|.
T Consensus 70 ~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 70 QFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp HHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred HHhcccCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 45555566788999999999999999988874
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.36 E-value=4.7e-05 Score=47.80 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
|+++|++||||||+.+.++
T Consensus 5 Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999998885
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.36 E-value=4.9e-05 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+.+-.
T Consensus 29 Ei~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 29 DVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCc
Confidence 357899999999999999998754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.35 E-value=5e-05 Score=50.04 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+...+++.|++|+||||+++.++..
T Consensus 42 ~~~~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 42 TGSMPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp HTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344457899999999999999988653
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.35 E-value=6.6e-05 Score=48.15 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=23.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..++++-|+|-|..||||||+++.|...
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567788999999999999999999643
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.35 E-value=5e-05 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
-|+++||+||||||+++++...
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3678999999999999998643
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.33 E-value=5.3e-05 Score=50.15 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.||||+||||+++.++..
T Consensus 34 ~~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 34 VLDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHhc
Confidence 3456899999999999999998653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.31 E-value=5e-05 Score=50.34 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.||||+||||+++.+++.
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999753
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=3e-05 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|.++|.+||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999954
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.30 E-value=0.0001 Score=48.62 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 7 KFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 7 ~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.+.....+...+++.|++|+||||+++.++..
T Consensus 23 ~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 23 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHH
Confidence 3444444455556899999999999999988753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=7.7e-05 Score=48.49 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~ 38 (183)
++-|+|.|++|||||||.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5779999999999999998874
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.30 E-value=7.7e-05 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
-++++|+.|+|||||++.+.+-..
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~~ 55 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFLK 55 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHHCCCc
Confidence 468999999999999999987643
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.29 E-value=6.1e-05 Score=48.23 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHhcc
Q 030113 20 IIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~ 39 (183)
|+|+||+|||||||+++|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998854
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=6.7e-05 Score=47.52 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+++||+|+||+||+++|...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 778999999999999999753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.27 E-value=0.00017 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+|+|.|++|+|||||+++++..
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEeeccccchHHHHHHhhh
Confidence 46899999999999999999764
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.26 E-value=0.00011 Score=52.30 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=24.0
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...-+..+..-+++++|++|||||++++.++.
T Consensus 34 ~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 34 VIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp HHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence 33444456667789999999999999876653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.25 E-value=3.6e-05 Score=51.01 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++++|++|||||||++.+.+-..
T Consensus 32 e~~~iiG~sGsGKSTll~~i~gl~~ 56 (242)
T d1oxxk2 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (242)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCcC
Confidence 4678999999999999999987543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=8.9e-05 Score=48.61 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=23.7
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.......+...+++.|++|+||||+++.++.
T Consensus 27 L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 27 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCchhhHHHHHH
Confidence 33333444555689999999999999988864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=8.7e-05 Score=48.10 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
-|+|+||+|||||||++++...
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3678999999999999999653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.16 E-value=0.00013 Score=48.65 Aligned_cols=25 Identities=20% Similarity=0.091 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.||+|+||||+++.++..
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457889999999999999999764
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=97.16 E-value=0.00014 Score=46.31 Aligned_cols=24 Identities=29% Similarity=0.178 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.++-|+|.|.+||||||+++.|..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998854
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.14 E-value=0.00011 Score=46.65 Aligned_cols=20 Identities=45% Similarity=0.745 Sum_probs=16.8
Q ss_pred EE-EEEcCCCCCHHHHHHHhc
Q 030113 19 KI-IIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 19 ~i-~viG~~~~GKStl~~~l~ 38 (183)
|| +|.|.+||||||+++.|.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 44 456999999999999885
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.14 E-value=0.00011 Score=48.13 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+...+++.|++|+||||+++.++..
T Consensus 32 ~~~~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 32 EGKLPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp TTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCChhHHHHHHHHH
Confidence 334446889999999999999998753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.13 E-value=0.0002 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..--+++.|++|+|||++++.++..
T Consensus 41 ~~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 41 IPKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHH
Confidence 3446899999999999999999753
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=97.07 E-value=0.00012 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.++++||||||||.|+++++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhh
Confidence 4578999999999999999965
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.06 E-value=0.00027 Score=47.39 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..--+++.||+|+|||+++++++..
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceeEEecCCCCCchHHHHHHHHH
Confidence 4456899999999999999999754
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00019 Score=46.74 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-|+|.|||||||||+...|+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577889999999999998854
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.95 E-value=0.00028 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...-.+++.|++|+|||++++.++.
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999998864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.94 E-value=0.00027 Score=45.84 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.1
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...+++..-|.+.|.+|+||||+.+.|..
T Consensus 18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 18 ELRNQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457778899999999999999998853
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.91 E-value=0.00035 Score=46.97 Aligned_cols=20 Identities=25% Similarity=-0.024 Sum_probs=16.8
Q ss_pred EEEcCCCCCHHHHHHHhccC
Q 030113 21 IIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 21 ~viG~~~~GKStl~~~l~~~ 40 (183)
++.|+||+|||++++.++..
T Consensus 50 ~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHH
T ss_pred EeECCCCCCHHHHHHHHHHH
Confidence 44599999999999998653
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00027 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-.+++.||||+|||++++.++.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 34589999999999999999974
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.00024 Score=47.18 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.|++|+||||+++.++..
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3446899999999999999988653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.89 E-value=0.00024 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-.++|.|++|+|||||+++++.
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Confidence 34678899999999999998853
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.87 E-value=0.00048 Score=46.70 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHh
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l 37 (183)
.+++++-|+|-|.+|||||||...+
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l 47 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQI 47 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHH
Confidence 4566789999999999999998766
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.82 E-value=0.00049 Score=46.28 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...--|++.|++|+|||+|+++++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHH
Confidence 34456899999999999999999754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.78 E-value=0.00024 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-+|+++||+|||||-|+++|+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998854
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.65 E-value=0.00057 Score=43.93 Aligned_cols=20 Identities=50% Similarity=0.601 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHhc
Q 030113 19 KIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~ 38 (183)
-|+|-|..||||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999998885
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.65 E-value=0.019 Score=37.16 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=44.1
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEeCCCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQDLKDAM 134 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi-lv~nK~Dl~~~~ 134 (183)
...+.++|+++.... .....+..+|.++++...+ ..++.........+.+ .+.|++ +|.|+.+..+..
T Consensus 111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~ 179 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRD 179 (237)
T ss_dssp GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTC
T ss_pred cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccch
Confidence 357899999976533 3444577899999999875 3445555444443322 345655 789999865543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.63 E-value=0.0003 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=17.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l 37 (183)
++..-|+|.|.+||||||+.++|
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l 24 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTF 24 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHH
Confidence 45667999999999999999876
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00088 Score=43.23 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
+-|+|.|..||||||+++.+..
T Consensus 4 ~iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 5688999999999999998853
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.00097 Score=42.92 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
+-|+|.|..||||||+++.+..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999988853
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.00089 Score=43.93 Aligned_cols=23 Identities=39% Similarity=0.231 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-.|+|-|+.||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35788899999999999988653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00094 Score=43.10 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=24.3
Q ss_pred HHHhhhcCCCcc-eEEEEEcCCCCCHHHHHHHhcc
Q 030113 6 SKFWFMLFPGKD-YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 6 ~~~~~~~~~~~~-~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.+.+.....+- .-+++.|++|+||||++..++.
T Consensus 12 ~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp HHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 344444444443 4489999999999999987754
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.34 E-value=0.0011 Score=46.54 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=20.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.--+++.||||+|||+|++.+++
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHH
Confidence 334678999999999999998864
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.001 Score=42.88 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-|+|-|..||||||+++.|..
T Consensus 4 fIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377889999999999998853
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.001 Score=42.81 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-+.|.|++|+|||+|+..++.
T Consensus 25 v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 456999999999999887764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.24 E-value=0.00061 Score=47.30 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~ 38 (183)
-.+++.|++|+|||+|++++.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHH
Confidence 468999999999999999885
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.0013 Score=43.12 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
-+.|.|++|+|||+|+..++..
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4569999999999999887643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0014 Score=43.19 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.+++.|++|+||||+++.++.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478889999999999988753
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0018 Score=41.74 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-|+|-|..|+||||+++.|..
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4477789999999998887743
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=96.13 E-value=0.0014 Score=45.13 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
+++.|+||+|||.+++.+.+.
T Consensus 126 ~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 455799999999999999653
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.08 E-value=0.0014 Score=42.42 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
+.+.|++|+|||.|+++++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.00023 Score=45.49 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=16.0
Q ss_pred EEEcCCCCCHHHHHHHhc
Q 030113 21 IIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 21 ~viG~~~~GKStl~~~l~ 38 (183)
+|+|+.|+||||++.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 478999999999999884
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0011 Score=45.25 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l 37 (183)
.++ +++|+.|+||||++.++
T Consensus 25 ~ln-vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 25 RVT-AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp SEE-EEECCTTTCSTHHHHHH
T ss_pred CeE-EEECCCCCcHHHHHHHH
Confidence 355 58999999999999887
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.05 E-value=0.0017 Score=42.85 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-++|.|++|+|||+|...++.
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 456999999999999887753
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.03 E-value=0.0018 Score=40.54 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.=|++.|++|+||||++-.+...
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 45789999999999999887654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.98 E-value=0.0022 Score=40.12 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..=|++.|++|+||||++..+...
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 345789999999999999888654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.98 E-value=0.002 Score=45.29 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...-+++++||+|||||-++++|+.
T Consensus 66 ~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 66 LSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcceeeeCCCCccHHHHHHHHHh
Confidence 4456699999999999999998853
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.97 E-value=0.0036 Score=42.18 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=20.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....-|+|.|..|+|||||+..+.+.
T Consensus 42 ~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 42 LDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34456789999999999999887543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0029 Score=43.46 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.++++||+|+|||.|+..++.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHh
Confidence 3688999999999999998854
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0022 Score=42.10 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-|+|=|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 467789999999999999864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.85 E-value=0.0023 Score=41.97 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++|.|+||+|||+|+..++.
T Consensus 27 sl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3456999999999999887754
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.85 E-value=0.0019 Score=44.65 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=22.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.++|.|=|+-|+||||+++.+...
T Consensus 3 m~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 3 MGVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHH
Confidence 45688999999999999999998653
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.75 E-value=0.0033 Score=43.51 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..++|.|=|+-|+||||+++.+...
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred ceEEEEEECCccCCHHHHHHHHHHH
Confidence 3578999999999999999998653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.73 E-value=0.0029 Score=39.30 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..=|++.|++|+||||+.-.+...
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc
Confidence 456889999999999998777554
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0024 Score=45.35 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=18.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.+.+++ |+|+.|+|||+++.++.
T Consensus 24 ~~~l~~-i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 24 ESNFTS-IIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp TCSEEE-EECSTTSSHHHHHHHHH
T ss_pred CCCEEE-EECCCCCCHHHHHHHHH
Confidence 345664 88999999999999873
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.70 E-value=0.0018 Score=41.35 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.--+++.|++++|||.|+..+..
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 335567899999999999987754
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=95.67 E-value=0.0031 Score=43.51 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
-++|.|-|+-|+||||+++.+..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 46799999999999999999964
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.59 E-value=0.0033 Score=41.11 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--+.|.|++|+|||+|+..++.
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3456899999999999888854
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.58 E-value=0.0029 Score=45.05 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
=-|+|.|++|+||||.++.+...
T Consensus 159 GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 159 GIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHhhh
Confidence 34679999999999999988653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.58 E-value=0.0036 Score=40.44 Aligned_cols=22 Identities=45% Similarity=0.462 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.=|++-|..||||||+++.|..
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4478899999999999988853
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.0036 Score=41.15 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--+.|.|++|+|||+|...++.
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999988864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.39 E-value=0.0085 Score=40.08 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCHHHHHHHhc
Q 030113 19 KIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~ 38 (183)
-+.+.|++++|||+|+..++
T Consensus 62 i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHH
Confidence 34689999999999987665
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.32 E-value=0.0048 Score=40.40 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|..||||||+++.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998854
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.23 E-value=0.0052 Score=39.82 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=16.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~ 38 (183)
--+.|.|++|+|||+|+..++
T Consensus 27 ~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 27 RSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 345688999999999986653
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.16 E-value=0.0055 Score=40.98 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.2
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
++|.|++|+|||+|+..++
T Consensus 38 ~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5699999999999977664
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.05 E-value=0.0064 Score=40.70 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-+.+.|++++|||+|+..++.
T Consensus 59 itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEecCCccchHHHHHHHHH
Confidence 446899999999999887754
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.96 E-value=0.0047 Score=41.78 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=13.0
Q ss_pred EEEEcCCCCCHHHHH
Q 030113 20 IIIVGLDNAGKTTTL 34 (183)
Q Consensus 20 i~viG~~~~GKStl~ 34 (183)
++|+|.+|+||||.+
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEeeCCccHHHHH
Confidence 678999999999764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.007 Score=40.32 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.2
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
.+|.|++|+|||+|+..++
T Consensus 32 ~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4589999999999987664
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.92 E-value=0.011 Score=40.51 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.++++|++|+|||.+++.++.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 578889999999999988753
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.91 E-value=0.006 Score=41.62 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=13.1
Q ss_pred EEEEcCCCCCHHHHH
Q 030113 20 IIIVGLDNAGKTTTL 34 (183)
Q Consensus 20 i~viG~~~~GKStl~ 34 (183)
++|.|.+|+||||.+
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEecCCccHHHHH
Confidence 778999999999764
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.59 E-value=0.012 Score=39.23 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=20.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.--+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 4556677889999999999988854
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.011 Score=39.84 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.-|++|+|++|+|||+|+..+..
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4668999999999999999988764
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.0085 Score=42.72 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~ 38 (183)
.+++|+|.+|+|||+++..+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 458999999999999987664
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.28 E-value=0.013 Score=34.00 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
++..+.|.+-|..|+|||++.++|.
T Consensus 3 ~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 3 PKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CccceEEEEeCCCCCCHHHHHHHHH
Confidence 3567899999999999999999884
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.65 E-value=0.019 Score=40.11 Aligned_cols=18 Identities=44% Similarity=0.460 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCHHHHHHH
Q 030113 19 KIIIVGLDNAGKTTTLYK 36 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~ 36 (183)
-.+|.|++|+|||+++.+
T Consensus 165 ~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp EEEEECCTTSTHHHHHHH
T ss_pred eEEEEcCCCCCceehHHH
Confidence 456889999999998744
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=93.50 E-value=0.023 Score=37.64 Aligned_cols=72 Identities=8% Similarity=0.014 Sum_probs=38.4
Q ss_pred eEEEEEEcCCChhh-HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCC
Q 030113 61 IRFEAWDVGGQERL-RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDA 133 (183)
Q Consensus 61 ~~~~~~D~~g~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~ 133 (183)
..+.++|+|+.... ..........+|.++++.+.. ..++.........+.......+.+ .-++.|+.+....
T Consensus 116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~ 189 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE 189 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC
T ss_pred CCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc
Confidence 57999999864432 222223335578888888764 344444333322222111123333 3477899886543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=93.37 E-value=0.025 Score=37.27 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+|.|++|+||+.+++.+..
T Consensus 24 ~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 24 CPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp SCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHHH
Confidence 3478999999999999998853
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.28 E-value=0.025 Score=37.62 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--+.+.|++++|||+|+-.++.
T Consensus 55 ~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 55 RIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCcHHHHHHHHHHH
Confidence 3457999999999999877753
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.76 E-value=0.036 Score=37.01 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-|++|+|++|+|||+|+..+..
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHH
Confidence 456899999999999999877753
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.048 Score=35.54 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
++|.|+..+||||+++.+.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 5688999999999999874
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=91.78 E-value=0.06 Score=33.53 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++|+|..++|||.+...+...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 589999999999999998754
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=91.67 E-value=0.055 Score=35.00 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
++|.|+..+||||+++.+.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 5688999999999999874
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=91.46 E-value=0.055 Score=31.70 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~ 38 (183)
-..+|.+++|+|||+++-.+.
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHH
Confidence 344678999999999876543
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.093 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=15.4
Q ss_pred cceEE-EEEcCCCCCHHHHHHHh
Q 030113 16 KDYKI-IIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 16 ~~~~i-~viG~~~~GKStl~~~l 37 (183)
+..+| ++-|..|+||||+.-.|
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 33444 45599999999985544
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.07 Score=33.79 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.4
Q ss_pred eEEEEEcCC-CCCHHHHHHHh
Q 030113 18 YKIIIVGLD-NAGKTTTLYKL 37 (183)
Q Consensus 18 ~~i~viG~~-~~GKStl~~~l 37 (183)
-|+.|.|.. ||||||+.-.|
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~L 22 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCAL 22 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHH
Confidence 378899995 99999996655
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=91.15 E-value=0.069 Score=35.70 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=35.6
Q ss_pred CeEEEEEEcCCChhhHh-hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERLRT-SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV-LIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~v-ilv~nK~Dl~ 131 (183)
...+.++|+|+...... ........++.++++.... ..++.........+.......+.++ -+|.|+.+..
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence 35788999987542221 1122234567777766543 3444444333333222112234444 3778988743
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.93 E-value=0.083 Score=35.20 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.1
Q ss_pred EEEEEcCCCCCHHHHHHHh
Q 030113 19 KIIIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l 37 (183)
-|++.|..|+||||+.-.+
T Consensus 10 ~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCcChHHHHHHHH
Confidence 4567899999999986544
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.69 E-value=0.084 Score=33.35 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=22.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+....+++.|++|+|||+++..+..
T Consensus 12 ~~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 12 KSEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp TCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999988764
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=90.45 E-value=0.085 Score=31.31 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=13.8
Q ss_pred EEEcCCCCCHHH-HHHHh
Q 030113 21 IIVGLDNAGKTT-TLYKL 37 (183)
Q Consensus 21 ~viG~~~~GKSt-l~~~l 37 (183)
+++||-.+|||| |++++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHH
Confidence 578999999999 55554
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.97 E-value=0.085 Score=35.37 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.-|++|+|++|+|||+|+..+..
T Consensus 66 g~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 66 GRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEeecCCCCChHHHHHHHHH
Confidence 3557889999999999999876643
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.56 E-value=0.13 Score=34.88 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=13.2
Q ss_pred EEEcCCCCCHHHHHH
Q 030113 21 IIVGLDNAGKTTTLY 35 (183)
Q Consensus 21 ~viG~~~~GKStl~~ 35 (183)
++.|.+|+|||||-.
T Consensus 18 lfFGLSGTGKTTLs~ 32 (313)
T d2olra1 18 VFFGLSGTGKTTLST 32 (313)
T ss_dssp EEECSTTSSHHHHHC
T ss_pred EEEccCCCCccccee
Confidence 589999999999863
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.28 E-value=0.13 Score=34.94 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=13.6
Q ss_pred EEEEcCCCCCHHHHHH
Q 030113 20 IIIVGLDNAGKTTTLY 35 (183)
Q Consensus 20 i~viG~~~~GKStl~~ 35 (183)
-++.|.+|+|||||-.
T Consensus 17 alffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLST 32 (318)
T ss_dssp EEEEECTTSCHHHHTC
T ss_pred EEEEccCCCCcccccc
Confidence 3688999999999863
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=86.59 E-value=0.12 Score=34.51 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l 37 (183)
+.-|++|+|++|+|||+|+..+
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~ 87 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDT 87 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHH
T ss_pred CCceEeeccCCCCChHHHHHHH
Confidence 4568899999999999998654
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=86.03 E-value=0.13 Score=29.67 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=13.8
Q ss_pred cceEEEEEcCCCCCHHHH
Q 030113 16 KDYKIIIVGLDNAGKTTT 33 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl 33 (183)
+.-++++.+++|+|||..
T Consensus 6 ~~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp TTCEEEECCCTTSSTTTT
T ss_pred cCCcEEEEcCCCCChhHH
Confidence 345667889999999944
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.00 E-value=0.17 Score=34.39 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=13.0
Q ss_pred EEEcCCCCCHHHHH
Q 030113 21 IIVGLDNAGKTTTL 34 (183)
Q Consensus 21 ~viG~~~~GKStl~ 34 (183)
++.|.+|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (323)
T d1ii2a1 18 VFFGLSGTGKTTLS 31 (323)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 58999999999997
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.30 E-value=0.27 Score=31.28 Aligned_cols=65 Identities=9% Similarity=-0.015 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
...+.++|+|+.... .....+..+|.+++|..... .++............. ...++-+|+|+.+-
T Consensus 109 ~~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~~~~---~~~~~~iv~N~~~~ 173 (232)
T d1hyqa_ 109 STDILLLDAPAGLER--SAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL---GTKVLGVVVNRITT 173 (232)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH---TCEEEEEEEEEECT
T ss_pred ccceeeecccccccc--hhHHHhhhhheeeeeccccc-cchhhhhhhhhhhhhc---cccccccccccccc
Confidence 346889999876543 23334566899999998743 3343333322222111 11234578899864
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.58 E-value=0.26 Score=30.59 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.0
Q ss_pred EEEEEcCCCCCHHHHH
Q 030113 19 KIIIVGLDNAGKTTTL 34 (183)
Q Consensus 19 ~i~viG~~~~GKStl~ 34 (183)
++++.+++|+|||...
T Consensus 25 n~lv~~pTGsGKT~i~ 40 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIA 40 (200)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred CeEEEeCCCCcHHHHH
Confidence 4678899999999743
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=84.19 E-value=0.52 Score=28.93 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=17.7
Q ss_pred CcceEEEEEcC-CCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGL-DNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~-~~~GKStl~~~l~~~ 40 (183)
++.+||+|+|. .++|-|... +|..+
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~-~La~g 47 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLF-KLASG 47 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHH-HHHHT
T ss_pred CCCcEEEEECCCcHHHHHHHH-HHHcC
Confidence 46789999996 778866555 44443
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=83.44 E-value=0.43 Score=30.81 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=20.2
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHh
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l 37 (183)
...........++.|++|+|||-+.-+.
T Consensus 69 ~~~~~~~~~~~LL~GdvGsGKT~V~~~a 96 (233)
T d2eyqa3 69 SDMCQPLAMDRLVCGDVGFGKTEVAMRA 96 (233)
T ss_dssp HHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred HHHhccCccCeEEEcCCCCCcHHHHHHH
Confidence 3344455567789999999999985443
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.19 E-value=2.7 Score=24.64 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=17.2
Q ss_pred EEEEEcC-CCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGL-DNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~-~~~GKStl~~~l~~~~~ 42 (183)
||.|+|. ..+| +++...+.....
T Consensus 2 Kv~IiGA~G~VG-~~~A~~l~~~~~ 25 (144)
T d1mlda1 2 KVAVLGASGGIG-QPLSLLLKNSPL 25 (144)
T ss_dssp EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred eEEEECCCChHH-HHHHHHHHhCCc
Confidence 7999995 8999 666777765543
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.44 E-value=0.39 Score=31.67 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=19.3
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHh
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l 37 (183)
..........-++-|+.|||||-+.-..
T Consensus 97 ~d~~~~~~m~rLL~GdvGSGKT~Va~~a 124 (264)
T d1gm5a3 97 NDMISEKPMNRLLQGDVGSGKTVVAQLA 124 (264)
T ss_dssp HHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred HHhhccCcceeeeeccccccccHHHHHH
Confidence 3333445555679999999999885443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.28 E-value=0.16 Score=31.79 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.1
Q ss_pred eEEEEEcCCCCCHHHHH
Q 030113 18 YKIIIVGLDNAGKTTTL 34 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~ 34 (183)
-++++.+++|+|||+..
T Consensus 41 ~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 41 KNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp SCEEEECSSHHHHHHHH
T ss_pred CCEEEEcCCCCchhHHH
Confidence 35789999999999763
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