Citrus Sinensis ID: 030126

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFAFSF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccEEEccccccccEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEHHccccccccccHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEcEEEEHHHHHHHHHHHHEEccccccccccEEEcccccccccEHHHHHHHccccHccHHHHHHHHHHHHcccccccEEEEEcc
Coil and Loop (DISEMBL)
MIRLFKVKEkqkedaenntggtpvkkqcagelrlhkditelnlpeackisfpngqddlmnfevsikpdegyyqngtfvfsfevppiyphdapkvkcktkVDIFFLNFIHMLLLFNHAIKLELYTFEsnlqvyhpnidlegNVCLNVLredwkpvlniNTIIYGLYHLFTVMLDHSIFFAFSF
Flexible Loop (DISEMBL)
mirlfkvkekqkedaenntggtpvkkqcagELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFAFSF
Low Complexity Region (SEG)
MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFAFSF
Disordered region (IsUnstruct)
****************************AGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFAF**
Disordered Region (DISOPRED)
MIRLF******************************KDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFAFSF
Disordered Region (DISEMBL)
MIRLFKVK*************TPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFAFSF
Disordered Region (DISPRO)
MIRLFKVKEKQKED***************GELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFAFSF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFAFSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q9SDY5	184	NEDD8-conjugating enzyme	yes	no	0.758	0.75	0.676	7e-61
Q9ZU75	185	Probable NEDD8-conjugatin	no	no	0.758	0.745	0.643	2e-57
Q6DCZ9	183	NEDD8-conjugating enzyme	N/A	no	0.736	0.732	0.523	2e-40
P61082	183	NEDD8-conjugating enzyme	yes	no	0.736	0.732	0.523	4e-40
P61081	183	NEDD8-conjugating enzyme	yes	no	0.736	0.732	0.523	4e-40
A3KN22	183	NEDD8-conjugating enzyme	yes	no	0.736	0.732	0.523	4e-40
Q6P8D9	183	NEDD8-conjugating enzyme	yes	no	0.736	0.732	0.517	9e-40
Q9VSF3	181	NEDD8-conjugating enzyme	yes	no	0.730	0.734	0.494	3e-37
Q6C9W0	179	NEDD8-conjugating enzyme	yes	no	0.719	0.731	0.452	3e-36
Q54TI6	230	NEDD8-conjugating enzyme	yes	no	0.686	0.543	0.402	1e-28

>sp|Q9SDY5|RCE1_ARATH NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1

 Score =  233 bits (593), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 128/170 (75%), Gaps = 32/170 (18%)

Query: 1   MIRLFKVKEKQKEDAENNT-GGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLM 59
           MI LFKVKEKQ+E A+N T GG  VKKQ AGELRLHKDI+ELNLP +C ISFPNG+DDLM
Sbjct: 1   MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLM 60

Query: 60  NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIK 119
           NFEVSIKPD+GYY NGTFVF+F+V P+YPH+APKVKCKTK                    
Sbjct: 61  NFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTK-------------------- 100

Query: 120 LELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                      VYHPNIDLEGNVCLN+LREDWKPVLNINT+IYGL+HLFT
Sbjct: 101 -----------VYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFT 139

Accepts the ubiquitin-like protein NEDD8/RUB1 from the ECR1-AXR1 E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9ZU75|UB12L_ARATH Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1

 Score =  221 bits (563), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 129/171 (75%), Gaps = 33/171 (19%)

Query: 1   MIRLFKVKEKQKEDAENNTG--GTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
           MI LFKVKEKQ+E++++N G   + VKKQ AGELRLHKDI+ELNLP++CKISFPNG++DL
Sbjct: 1   MIGLFKVKEKQREESQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDL 60

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
           MNFEV+IKPDEGYY +G FVFSF+V  +YPH+APKVKCKTK                   
Sbjct: 61  MNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTK------------------- 101

Query: 119 KLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                       VYHPNIDLEGNVCLN+LREDWKPVLNINT+IYGL+HLFT
Sbjct: 102 ------------VYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFT 140

Accepts the ubiquitin-like protein NEDD8/RUB1 from the ECR1-AXR1 E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6DCZ9|UBC12_XENLA NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 110/170 (64%), Gaps = 36/170 (21%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDITELNLP+ C+I F +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDITELNLPKTCEIEFSD-HDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
           +NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T                    
Sbjct: 58  LNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCET-------------------- 97

Query: 119 KLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                       VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF
Sbjct: 98  -----------MVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLF 136

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase rbx1, but not rbx2, suggests that the rbx1-ube2m complex neddylates specific target proteins, such as cul1, cul2, cul3 and cul4. Involved in cell proliferation.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P61082|UBC12_MOUSE NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1

 Score =  164 bits (414), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 110/170 (64%), Gaps = 36/170 (21%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
           +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T                    
Sbjct: 58  LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-------------------- 97

Query: 119 KLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                       VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF
Sbjct: 98  -----------MVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLF 136

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P61081|UBC12_HUMAN NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1

 Score =  164 bits (414), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 110/170 (64%), Gaps = 36/170 (21%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
           +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T                    
Sbjct: 58  LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-------------------- 97

Query: 119 KLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                       VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF
Sbjct: 98  -----------MVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLF 136

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A3KN22|UBC12_BOVIN NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1

 Score =  164 bits (414), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 110/170 (64%), Gaps = 36/170 (21%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
           +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T                    
Sbjct: 58  LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-------------------- 97

Query: 119 KLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                       VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF
Sbjct: 98  -----------MVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLF 136

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6P8D9|UBC12_XENTR NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1

 Score =  162 bits (411), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 36/170 (21%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C+I F +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCEIEFSD-HDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
           +NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T                    
Sbjct: 58  LNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCET-------------------- 97

Query: 119 KLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                       VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF
Sbjct: 98  -----------MVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLF 136

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase rbx1, but not rbx2, suggests that the rbx1-ube2m complex neddylates specific target proteins, such as cul1, cul2, cul3 and cul4. Involved in cell proliferation.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9VSF3|UBC12_DROME NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=2 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 104/168 (61%), Gaps = 35/168 (20%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LF +K+ QK+D E    G+  KK  A +LR+ KDI ELNLP  C   FP+  +DL+N
Sbjct: 1   MIKLFTLKQ-QKKDGEQK--GSQQKKASAAQLRIQKDINELNLPNTCATDFPD-PNDLLN 56

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           F++ I PDEG+Y++G FVF+F V   YPH+ PKVKC T                      
Sbjct: 57  FKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCAT---------------------- 94

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                    QVYHPNIDL+GNVCLN+LREDW PVLNIN+I+YGL  LF
Sbjct: 95  ---------QVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLF 133

Accepts the ubiquitin-like protein NEDD8 from the Uba3-Ula1 E1 complex and catalyzes its covalent attachment to other proteins.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6C9W0|UBC12_YARLI NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=UBC12 PE=3 SV=1

 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 37/168 (22%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           M++++ +KEKQ  +     GG+  KK  A +LR+ KD++EL+LP   K  FP+ +D +MN
Sbjct: 1   MLKIWSMKEKQAAE-----GGSAKKKVTAAQLRVQKDLSELSLPSTMKTHFPSAED-IMN 54

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           FE++++PDEG+YQ G F FSF V P +PH+ PKVKC  K                     
Sbjct: 55  FELTVRPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQK--------------------- 93

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                     VYHPNIDLEGNVCLN+LREDWKPVL++N ++ GL +LF
Sbjct: 94  ----------VYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLF 131

Accepts the ubiquitin-like protein NEDD8/RUB1 from the UBA3-ULA1 E1 complex and catalyzes its covalent attachment to other proteins.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54TI6|UBC12_DICDI NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 89/164 (54%), Gaps = 39/164 (23%)

Query: 5   FKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVS 64
           F +K KQ  ++ +       K+    ELR  KDI E+ +P  C +SF +  +D++NF +S
Sbjct: 60  FSLKTKQSSESGS-------KRANPAELRAQKDIDEMEVPTGCAVSFKD-TNDILNFNLS 111

Query: 65  IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYT 124
           I P +G YQ+ TF F+  +P  YP+D PKV C T                          
Sbjct: 112 ITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDT-------------------------- 145

Query: 125 FESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                 VYHPNIDLEG+VCLN+LR+DW PVLNI T+I+GL  LF
Sbjct: 146 -----LVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLF 184

Accepts the ubiquitin-like protein nedd8 from the uba3-nae1 E1 complex and catalyzes its covalent attachment to other proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
255568247	183	ubiquitin-conjugating enzyme m, putative	0.758	0.754	0.698	1e-61
224094692	183	predicted protein [Populus trichocarpa]	0.758	0.754	0.680	5e-60
388501480	183	unknown [Lotus japonicus] gi|388505000|g	0.758	0.754	0.668	1e-59
363807446	183	uncharacterized protein LOC100813186 [Gl	0.758	0.754	0.674	2e-59
312281479	184	unnamed protein product [Thellungiella h	0.758	0.75	0.676	3e-59
238481123	184	NEDD8-conjugating enzyme Ubc12 [Arabidop	0.758	0.75	0.676	4e-59
76573335	183	RUB1-conjugating enzyme-like protein [So	0.758	0.754	0.674	7e-59
115371812	183	ubiquitin-conjugating enzyme [Capsicum a	0.758	0.754	0.668	7e-59
449448408	183	PREDICTED: NEDD8-conjugating enzyme Ubc1	0.758	0.754	0.674	1e-58
359475268	183	PREDICTED: NEDD8-conjugating enzyme Ubc1	0.758	0.754	0.680	1e-58

>gi|255568247|ref|XP_002525098.1| ubiquitin-conjugating enzyme m, putative [Ricinus communis] gi|223535557|gb|EEF37225.1| ubiquitin-conjugating enzyme m, putative [Ricinus communis]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 129/169 (76%), Gaps = 31/169 (18%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MIRLFKVKEKQ+E AEN  GG P+KKQ AGELRLHKDI+ELNLP++C ISFPNG+DDLMN
Sbjct: 1   MIRLFKVKEKQREQAENANGGAPIKKQTAGELRLHKDISELNLPKSCTISFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           FEVSI+PDEGYY  GTF+FSF+V PIYPH+APKVKCKTK                     
Sbjct: 61  FEVSIRPDEGYYLGGTFLFSFQVSPIYPHEAPKVKCKTK--------------------- 99

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                     VYHPNIDLEGNVCLN+LREDWKPVLNINTIIYGLYHLFT
Sbjct: 100 ----------VYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFT 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094692|ref|XP_002310200.1| predicted protein [Populus trichocarpa] gi|118483300|gb|ABK93552.1| unknown [Populus trichocarpa] gi|222853103|gb|EEE90650.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 129/169 (76%), Gaps = 31/169 (18%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MIRLFKVKEKQ+E AEN  GG P+KKQ AGELRLHKDI+ELNLP++C ++FPNG+DDLM+
Sbjct: 1   MIRLFKVKEKQRELAENANGGVPIKKQSAGELRLHKDISELNLPKSCTMTFPNGKDDLMS 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           FEVSI+PDEGYY  GTF+FSF+V PIYPH+APKVKCKTK                     
Sbjct: 61  FEVSIRPDEGYYLGGTFLFSFQVSPIYPHEAPKVKCKTK--------------------- 99

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                     VYHPNIDLEGNVCLN+LREDWKPVLNINTIIYGLYHLFT
Sbjct: 100 ----------VYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFT 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501480|gb|AFK38806.1| unknown [Lotus japonicus] gi|388505000|gb|AFK40566.1| unknown [Lotus japonicus]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/169 (66%), Positives = 130/169 (76%), Gaps = 31/169 (18%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN +GG PVKKQ AGELRLHKDI+ELNLP++C I+FPNG+DDLMN
Sbjct: 1   MIKLFKVKEKQREQAENASGGPPVKKQSAGELRLHKDISELNLPKSCTITFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           FEVSI+PD+G+Y  GTF+F+F+V PIYPH+APKVKCKTK                     
Sbjct: 61  FEVSIRPDDGFYLGGTFLFTFQVSPIYPHEAPKVKCKTK--------------------- 99

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                     VYHPNIDLEGNVCLN+LREDWKPVLNINT+IYGLYHLFT
Sbjct: 100 ----------VYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFT 138

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807446|ref|NP_001242389.1| uncharacterized protein LOC100813186 [Glycine max] gi|356538061|ref|XP_003537523.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Glycine max] gi|255625655|gb|ACU13172.1| unknown [Glycine max] gi|255642299|gb|ACU21414.1| unknown [Glycine max]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 129/169 (76%), Gaps = 31/169 (18%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN +GG PVKKQ AGELRLHKDI+ELNLP++C + FPNG+DDLMN
Sbjct: 1   MIKLFKVKEKQRELAENASGGPPVKKQSAGELRLHKDISELNLPKSCTMQFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           FEVSI+PD+GYY  GTF+FSF+V PIYPH+APKVKCKTK                     
Sbjct: 61  FEVSIRPDDGYYLGGTFLFSFQVSPIYPHEAPKVKCKTK--------------------- 99

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                     VYHPNIDLEGNVCLN+LREDWKPVLNINT+IYGLYHLFT
Sbjct: 100 ----------VYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFT 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281479|dbj|BAJ33605.1| unnamed protein product [Thellungiella halophila]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 128/170 (75%), Gaps = 32/170 (18%)

Query: 1   MIRLFKVKEKQKEDAEN-NTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLM 59
           MI LFKVKEKQ+E A+N N GG  VKKQ AGELRLHKDI+ELNLP +C ISFPNG+DDLM
Sbjct: 1   MIGLFKVKEKQREQAQNANRGGASVKKQSAGELRLHKDISELNLPSSCAISFPNGKDDLM 60

Query: 60  NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIK 119
           NFEVSIKPD+GYY NGTFVF+F+V P+YPH+APKVKCKTK                    
Sbjct: 61  NFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTK-------------------- 100

Query: 120 LELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                      VYHPNIDLEGNVCLN+LREDWKPVLNINT+IYGL+HLFT
Sbjct: 101 -----------VYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFT 139

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481123|ref|NP_001154289.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis thaliana] gi|240256206|ref|NP_568008.4| NEDD8-conjugating enzyme Ubc12 [Arabidopsis thaliana] gi|297798212|ref|XP_002866990.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis lyrata subsp. lyrata] gi|75313330|sp|Q9SDY5.1|RCE1_ARATH RecName: Full=NEDD8-conjugating enzyme Ubc12; AltName: Full=RUB1 carrier protein 1; AltName: Full=RUB1-conjugating enzyme 1; AltName: Full=RUB1-protein ligase 1 gi|6635457|gb|AAF19827.1|AF202771_1 RUB1 conjugating enzyme [Arabidopsis thaliana] gi|15081636|gb|AAK82473.1| AT4g36800/C7A10_560 [Arabidopsis thaliana] gi|20453317|gb|AAM19897.1| AT4g36800/C7A10_560 [Arabidopsis thaliana] gi|297312826|gb|EFH43249.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis lyrata subsp. lyrata] gi|332661303|gb|AEE86703.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis thaliana] gi|332661304|gb|AEE86704.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis thaliana]

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 128/170 (75%), Gaps = 32/170 (18%)

Query: 1   MIRLFKVKEKQKEDAENNT-GGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLM 59
           MI LFKVKEKQ+E A+N T GG  VKKQ AGELRLHKDI+ELNLP +C ISFPNG+DDLM
Sbjct: 1   MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLM 60

Query: 60  NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIK 119
           NFEVSIKPD+GYY NGTFVF+F+V P+YPH+APKVKCKTK                    
Sbjct: 61  NFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTK-------------------- 100

Query: 120 LELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                      VYHPNIDLEGNVCLN+LREDWKPVLNINT+IYGL+HLFT
Sbjct: 101 -----------VYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFT 139

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573335|gb|ABA46772.1| RUB1-conjugating enzyme-like protein [Solanum tuberosum] gi|82623385|gb|ABB87107.1| RUB1 conjugating enzyme-like [Solanum tuberosum]

 Score =  231 bits (590), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 124/169 (73%), Gaps = 31/169 (18%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN  G  PVKKQ  GELRLHKDI+ELNLP+ C ISFPNG+DDLMN
Sbjct: 1   MIKLFKVKEKQREQAENANGKPPVKKQSPGELRLHKDISELNLPKTCSISFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           FEV+I+PDEGYY  GTF FSF + PIYPH+APKVKCKTK                     
Sbjct: 61  FEVTIRPDEGYYMGGTFTFSFSISPIYPHEAPKVKCKTK--------------------- 99

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                     VYHPNIDLEGNVCLN+LREDWKPVLNINTIIYGLYHLFT
Sbjct: 100 ----------VYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFT 138

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115371812|gb|ABI96209.1| ubiquitin-conjugating enzyme [Capsicum annuum]

 Score =  231 bits (590), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 113/169 (66%), Positives = 125/169 (73%), Gaps = 31/169 (18%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN  G  PVKKQ AGELRLHKDI+ELNLP+ C ISFPNG+D+LMN
Sbjct: 1   MIKLFKVKEKQREQAENENGKPPVKKQSAGELRLHKDISELNLPKTCSISFPNGKDNLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           FEV+I+PDEGYY  GTF FSF + P+YPH+APKVKCKTK                     
Sbjct: 61  FEVTIRPDEGYYTGGTFTFSFSISPMYPHEAPKVKCKTK--------------------- 99

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                     VYHPNIDLEGNVCLN+LREDWKPVLNINTIIYGLYHLFT
Sbjct: 100 ----------VYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFT 138

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448408|ref|XP_004141958.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Cucumis sativus] gi|449497703|ref|XP_004160486.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Cucumis sativus]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 126/169 (74%), Gaps = 31/169 (18%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN + G P KKQ AGELRLHKDI+ELNLP++C I+FPNG+DDLMN
Sbjct: 1   MIKLFKVKEKQRELAENASNGVPTKKQSAGELRLHKDISELNLPKSCNITFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           FEVSI+PDEGYY  GTF FSF V PIYPH+APKVKCKTKV                    
Sbjct: 61  FEVSIRPDEGYYLGGTFYFSFTVSPIYPHEAPKVKCKTKV-------------------- 100

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                      YHPNIDLEGNVCLN+LREDWKPVLNINT+IYGLYHLFT
Sbjct: 101 -----------YHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFT 138

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475268|ref|XP_003631628.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like isoform 1 [Vitis vinifera] gi|359475270|ref|XP_003631629.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like isoform 2 [Vitis vinifera] gi|147845872|emb|CAN82178.1| hypothetical protein VITISV_034608 [Vitis vinifera] gi|297741421|emb|CBI32552.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 127/169 (75%), Gaps = 31/169 (18%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN  G  PVKKQ AGELRLHKDI+ELNLP+ C ISFPNG+DDLM+
Sbjct: 1   MIKLFKVKEKQREIAENANGKAPVKKQSAGELRLHKDISELNLPKTCCISFPNGKDDLMS 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           FEV+I+PDEGYY  GTFVFSF+V PIYPH+APKVKCKTK                     
Sbjct: 61  FEVTIRPDEGYYLGGTFVFSFQVSPIYPHEAPKVKCKTK--------------------- 99

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                     VYHPNIDLEGNVCLN+LREDWKPVLNINTIIYGL+HLFT
Sbjct: 100 ----------VYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFT 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2115305	184	RCE1 "RUB1 conjugating enzyme	0.549	0.543	0.792	3.3e-61
TAIR|locus:2046303	185	AT2G18600 "AT2G18600" [Arabido	0.549	0.540	0.735	3.8e-58
UNIPROTKB|Q6DCZ9	183	ube2m "NEDD8-conjugating enzym	0.532	0.530	0.558	6.7e-43
UNIPROTKB|A3KN22	183	UBE2M "NEDD8-conjugating enzym	0.532	0.530	0.558	1.4e-42
UNIPROTKB|P61081	183	UBE2M "NEDD8-conjugating enzym	0.532	0.530	0.558	1.4e-42
MGI|MGI:108278	183	Ube2m "ubiquitin-conjugating e	0.532	0.530	0.558	1.4e-42
RGD|1307614	183	Ube2m "ubiquitin-conjugating e	0.532	0.530	0.558	1.4e-42
UNIPROTKB|Q6P8D9	183	ube2m "NEDD8-conjugating enzym	0.532	0.530	0.549	2.2e-42
UNIPROTKB|E2RIU5	185	UBE2M "Uncharacterized protein	0.532	0.524	0.548	2e-41
FB|FBgn0035853	181	Ubc12 "Ubiquitin conjugating e	0.527	0.530	0.52	8.4e-41

TAIR|locus:2115305 RCE1 "RUB1 conjugating enzyme 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 80/101 (79%), Positives = 90/101 (89%)

Query:     1 MIRLFKVKEKQKEDAENNT-GGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLM 59
             MI LFKVKEKQ+E A+N T GG  VKKQ AGELRLHKDI+ELNLP +C ISFPNG+DDLM
Sbjct:     1 MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLM 60

Query:    60 NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             NFEVSIKPD+GYY NGTFVF+F+V P+YPH+APKVKCKTKV
Sbjct:    61 NFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKV 101

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0019787 "small conjugating protein ligase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009790 "embryo development" evidence=IGI

GO:0019788 "NEDD8 ligase activity" evidence=TAS

GO:0006301 "postreplication repair" evidence=RCA

TAIR|locus:2046303 AT2G18600 "AT2G18600" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
 Identities = 75/102 (73%), Positives = 91/102 (89%)

Query:     1 MIRLFKVKEKQKEDAENNTG--GTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
             MI LFKVKEKQ+E++++N G   + VKKQ AGELRLHKDI+ELNLP++CKISFPNG++DL
Sbjct:     1 MIGLFKVKEKQREESQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDL 60

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             MNFEV+IKPDEGYY +G FVFSF+V  +YPH+APKVKCKTKV
Sbjct:    61 MNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKV 102

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0019787 "small conjugating protein ligase activity" evidence=ISS

GO:0006301 "postreplication repair" evidence=RCA

UNIPROTKB|Q6DCZ9 ube2m "NEDD8-conjugating enzyme Ubc12" [Xenopus laevis (taxid:8355)]

 Score = 283 (104.7 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 57/102 (55%), Positives = 75/102 (73%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDITELNLP+ C+I F +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDITELNLPKTCEIEFSD-HDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             +NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T V
Sbjct:    58 LNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMV 99

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0045116 "protein neddylation" evidence=ISS

UNIPROTKB|A3KN22 UBE2M "NEDD8-conjugating enzyme Ubc12" [Bos taurus (taxid:9913)]

 Score = 280 (103.6 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 57/102 (55%), Positives = 75/102 (73%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T V
Sbjct:    58 LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 99

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0045116 "protein neddylation" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P61081 UBE2M "NEDD8-conjugating enzyme Ubc12" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 57/102 (55%), Positives = 75/102 (73%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T V
Sbjct:    58 LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 99

GO:0005524 "ATP binding" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP;TAS

GO:0006464 "cellular protein modification process" evidence=IMP;TAS

GO:0045116 "protein neddylation" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0016567 "protein ubiquitination" evidence=IMP;TAS

MGI|MGI:108278 Ube2m "ubiquitin-conjugating enzyme E2M" [Mus musculus (taxid:10090)]

 Score = 280 (103.6 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 57/102 (55%), Positives = 75/102 (73%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T V
Sbjct:    58 LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 99

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISO

GO:0019788 "NEDD8 ligase activity" evidence=ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=ISO

RGD|1307614 Ube2m "ubiquitin-conjugating enzyme E2M" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 57/102 (55%), Positives = 75/102 (73%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T V
Sbjct:    58 LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 99

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=IEA;ISO

GO:0019788 "NEDD8 ligase activity" evidence=IEA;ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IMP

GO:0045116 "protein neddylation" evidence=ISO

UNIPROTKB|Q6P8D9 ube2m "NEDD8-conjugating enzyme Ubc12" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 278 (102.9 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 56/102 (54%), Positives = 74/102 (72%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C+I F +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCEIEFSD-HDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             +NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T V
Sbjct:    58 LNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMV 99

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0045116 "protein neddylation" evidence=ISS

UNIPROTKB|E2RIU5 UBE2M "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 269 (99.8 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 57/104 (54%), Positives = 75/104 (72%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKD--ITELNLPEACKISFPNGQD 56
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KD  I ELNLP+ C ISF +  D
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDPDINELNLPKTCDISFSD-PD 57

Query:    57 DLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             DL+NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T V
Sbjct:    58 DLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 101

GO:0019788 "NEDD8 ligase activity" evidence=IEA

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

FB|FBgn0035853 Ubc12 "Ubiquitin conjugating enzyme 12" [Drosophila melanogaster (taxid:7227)]

 Score = 264 (98.0 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
 Identities = 52/100 (52%), Positives = 70/100 (70%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
             MI+LF +K+ QK+D E    G+  KK  A +LR+ KDI ELNLP  C   FP+  +DL+N
Sbjct:     1 MIKLFTLKQ-QKKDGEQK--GSQQKKASAAQLRIQKDINELNLPNTCATDFPD-PNDLLN 56

Query:    61 FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100
             F++ I PDEG+Y++G FVF+F V   YPH+ PKVKC T+V
Sbjct:    57 FKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQV 96

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0045116 "protein neddylation" evidence=IDA

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SDY5	RCE1_ARATH	6, ., 3, ., 2, ., -	0.6764	0.7582	0.75	yes	no
P61082	UBC12_MOUSE	6, ., 3, ., 2, ., -	0.5235	0.7362	0.7322	yes	no
P61081	UBC12_HUMAN	6, ., 3, ., 2, ., -	0.5235	0.7362	0.7322	yes	no
Q6P8D9	UBC12_XENTR	6, ., 3, ., 2, ., -	0.5176	0.7362	0.7322	yes	no
A3KN22	UBC12_BOVIN	6, ., 3, ., 2, ., -	0.5235	0.7362	0.7322	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	3e-28
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	3e-26
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	5e-19
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	1e-18
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	2e-11
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	3e-09

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  102 bits (256), Expect = 3e-28
 Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 35/140 (25%)

Query: 33  RLHKDITEL-NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
           RL K++ EL   P     +FP   D+L  +EV+I  P+   Y+ G F    E P  YP  
Sbjct: 1   RLQKELKELLKDPPPGISAFPVD-DNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFK 59

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-E 149
            PKVK  TK                               +YHPN+D  G +CL++L+ E
Sbjct: 60  PPKVKFTTK-------------------------------IYHPNVDPSGEICLDILKDE 88

Query: 150 DWKPVLNINTIIYGLYHLFT 169
           +W P L I  ++  +  L +
Sbjct: 89  NWSPALTIEQVLLSIQSLLS 108

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 97.3 bits (243), Expect = 3e-26
 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 35/140 (25%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL K++ +L  + P       P   D+L ++E +I  P +  Y+ G F  + E P  YP 
Sbjct: 9   RLLKELKKLQKDPPPGISA-GPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPF 67

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PKV+  TK+                               +HPN+D  GNVCL++L++
Sbjct: 68  KPPKVRFTTKI-------------------------------FHPNVDPSGNVCLDILKD 96

Query: 150 DWKPVLNINTIIYGLYHLFT 169
            W PV  + TI+  L  L  
Sbjct: 97  RWSPVYTLETILLSLQSLLL 116

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 78.5 bits (194), Expect = 5e-19
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 36/136 (26%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL K++ EL  + P     ++P   ++L+ +  +I  P    Y+ G F  + E P  YP 
Sbjct: 1   RLLKELKELRKDPPPGFT-AYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPF 59

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR- 148
             PKVK  TK                               +YHPN+D  G +CL++L+ 
Sbjct: 60  KPPKVKFITK-------------------------------IYHPNVDSSGEICLDILKQ 88

Query: 149 EDWKPVLNINTIIYGL 164
           E W P L + T++  L
Sbjct: 89  EKWSPALTLETVLLSL 104

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 77.2 bits (191), Expect = 1e-18
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 35/140 (25%)

Query: 33  RLHKDITELNLPEACKISF-PNGQDDLMNFEVSIKPDEG-YYQNGTFVFSFEVPPIYPHD 90
           RL K++ +L       IS  P   ++L+ +  +I+      Y+ G F    E P  YP  
Sbjct: 3   RLQKELKDLKKDPPSGISAEPVE-ENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFK 61

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            PKV+  TK                               +YHPN+D  G +CL++L+  
Sbjct: 62  PPKVRFVTK-------------------------------IYHPNVDENGKICLSILKTH 90

Query: 151 -WKPVLNINTIIYGLYHLFT 169
            W P   + T++  L  L  
Sbjct: 91  GWSPAYTLRTVLLSLQSLLN 110

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 36/140 (25%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+  +L  + P  C    P+  ++L  +  SI  P +  Y  G F  S   PP YP 
Sbjct: 5   RIQKEHKDLLKDPPSNCSAG-PSD-ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPF 62

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PKV+  TK+                               YHPNI+  G++CL++LR+
Sbjct: 63  KPPKVQFTTKI-------------------------------YHPNINSNGSICLDILRD 91

Query: 150 DWKPVLNINTIIYGLYHLFT 169
            W P L ++ ++  +  L T
Sbjct: 92  QWSPALTVSKVLLSISSLLT 111

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 31/95 (32%)

Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           PD   Y+ G +     +P  YP + PKV+  TK+                          
Sbjct: 41  PDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKI-------------------------- 74

Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTII 161
                YHPNID  G +CL++L++ W P L I T++
Sbjct: 75  -----YHPNIDKLGRICLDILKDKWSPALQIRTVL 104

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.97
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.97
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.96
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.92
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.91
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.91
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.8
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.62
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.5
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.32
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.07
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.34
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.28
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.83
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	96.57
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	96.44
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	94.59
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	93.98
smart00591	107	RWD domain in RING finger and WD repeat containing	93.81
KOG3357	167	consensus Uncharacterized conserved protein [Funct	92.82
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	91.22

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-40  Score=265.57  Aligned_cols=119  Identities=34%  Similarity=0.689  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      .+.+||++|++++  ..++|+++. +.+++|+++|++.| ||.+||||||.|++.|.||++||++||+|+|.++      
T Consensus         5 ~a~~RL~kE~~~l~~~~~~~~~a~-p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~------   77 (153)
T COG5078           5 SALKRLLKELKKLQKDPPPGISAG-PVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTK------   77 (153)
T ss_pred             hHHHHHHHHHHHHhcCCCCceEEE-ECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccC------
Confidence            3899999999999  445788886 56455999999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               |||||||.+|+||||+|.++|+|+++|++||++|+++|.+||++||+++
T Consensus        78 -------------------------i~HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~  126 (153)
T COG5078          78 -------------------------IFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNT  126 (153)
T ss_pred             -------------------------CcCCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCCh
Confidence                                     9999999999999999999999999999999999999999999999986

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-40  Score=264.51  Aligned_cols=117  Identities=31%  Similarity=0.717  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +.+||.||++++  ..++||++. ++ ++|+++|+++| ||.+||||||+|++.|.||++||++||+|+|.|+       
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~-~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~Tk-------   72 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAG-PV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTK-------   72 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccC-CC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecc-------
Confidence            467999999988  678899997 54 79999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                              ||||||+..|.||||+|++.|+|++||++||.+|++||.+||++||+++
T Consensus        73 ------------------------IyHPNI~~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~  121 (148)
T KOG0417|consen   73 ------------------------IYHPNIDSNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVP  121 (148)
T ss_pred             ------------------------cccCCcCccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccH
Confidence                                    9999999999999999999999999999999999999999999999985

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-37  Score=244.33  Aligned_cols=120  Identities=25%  Similarity=0.590  Sum_probs=114.0

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      ...|.+||.+|++.+  +.+.|++.. |. ++|++.|++.| ||.+|||+||+|++.+.|+++||.+||.|+|.++    
T Consensus         2 stpArrrLmrDfkrlqedpp~gisa~-P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~----   75 (152)
T KOG0419|consen    2 STPARRRLMRDFKRLQEDPPAGISAA-PV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSK----   75 (152)
T ss_pred             CchHHHHHHHHHHHhhcCCCCCccCC-CC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeee----
Confidence            457889999999999  567888886 66 79999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                 +||||||.+|.+|||+|+..|+|.+++.+||.+||+||++|+++||+++
T Consensus        76 ---------------------------mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~  124 (152)
T KOG0419|consen   76 ---------------------------MFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANS  124 (152)
T ss_pred             ---------------------------ccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccH
Confidence                                       9999999999999999999999999999999999999999999999985

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=5.4e-37  Score=245.33  Aligned_cols=118  Identities=30%  Similarity=0.634  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      ++.+||++|++++  ..++|+.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+      
T Consensus         2 ~~~kRl~~E~~~l~~~~~~~i~~~-~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~------   73 (152)
T PTZ00390          2 SISKRIEKETQNLANDPPPGIKAE-PD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK------   73 (152)
T ss_pred             cHHHHHHHHHHHHHhCCCCCeEEE-EC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC------
Confidence            5679999999999  567888875 55 68999999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.||+++|.++|+|++||++||.+|++||.+|++++|+++
T Consensus        74 -------------------------i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~  122 (152)
T PTZ00390         74 -------------------------IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDT  122 (152)
T ss_pred             -------------------------CeeceECCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHH
Confidence                                     9999999999999999999999999999999999999999999999974

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-37  Score=250.98  Aligned_cols=147  Identities=59%  Similarity=1.046  Sum_probs=137.8

Q ss_pred             CcchhhhhhhhhhhhhhCCCCCCCccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcce--eEEeecCCCCccCCcEEE
Q 030126            1 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN--FEVSIKPDEGYYQNGTFV   78 (182)
Q Consensus         1 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~--w~v~igp~~tpYegg~f~   78 (182)
                      |++++++++++++.+.+.+. +...++++++.||++|+.++++|++|+++++.+.++++.  ++++|.|+++.|+||.|.
T Consensus         1 M~~L~~~~~k~~~~~~~~~~-~~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~   79 (184)
T KOG0420|consen    1 MIKLFKLKKKKREEEQSRYT-STRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFR   79 (184)
T ss_pred             CccHHHHHHhhhhhcccccc-cccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEE
Confidence            89999999988877665544 778889999999999999999999999998887777777  899999999999999999


Q ss_pred             EEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHH
Q 030126           79 FSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNIN  158 (182)
Q Consensus        79 ~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~  158 (182)
                      |.+.+|+.||++||+|+|.|+                               +|||||+.+|+|||++|+++|+|+.+|.
T Consensus        80 F~~~v~~~Yp~~PPKVkCltk-------------------------------V~HPNId~~GnVCLnILRedW~P~lnL~  128 (184)
T KOG0420|consen   80 FKFKVPNAYPHEPPKVKCLTK-------------------------------VYHPNIDLDGNVCLNILREDWRPVLNLN  128 (184)
T ss_pred             EEEECCCCCCCCCCeeeeeec-------------------------------cccCCcCCcchHHHHHHHhcCccccchH
Confidence            999999999999999999999                               9999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCcccc
Q 030126          159 TIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       159 siL~sI~~lL~~P~~~sp~~~  179 (182)
                      +|+.++++|+.+|+++|||+-
T Consensus       129 sIi~GL~~LF~epn~eDpLN~  149 (184)
T KOG0420|consen  129 SIIYGLQFLFLEPNPEDPLNK  149 (184)
T ss_pred             HHHHHHHHHhccCCCcccccH
Confidence            999999999999999999973

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=1.9e-36  Score=240.67  Aligned_cols=117  Identities=32%  Similarity=0.742  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +.+||++|++++  +.++|+.+. +. ++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+       
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~-~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~-------   72 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAG-PS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK-------   72 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEE-EC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC-------
Confidence            468999999999  557788776 44 68999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                              ++||||+.+|.||+++|.++|+|++||++||.+|++||.+|+++||++.
T Consensus        73 ------------------------i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~  121 (147)
T PLN00172         73 ------------------------IYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVP  121 (147)
T ss_pred             ------------------------cccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHH
Confidence                                    9999999999999999999999999999999999999999999999874

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.6e-35  Score=230.79  Aligned_cols=127  Identities=28%  Similarity=0.541  Sum_probs=118.5

Q ss_pred             CCCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030126           21 GTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (182)
Q Consensus        21 ~~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~   97 (182)
                      ..++.......|||++|+..|  ...+||+. +|+ +||++.|..+| ||.+|+|+|-.|++.+.||.+||+.||.|+|.
T Consensus        21 ~m~v~~~~~V~KRLq~ELm~Lmms~~~gISA-FP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFl   98 (175)
T KOG0421|consen   21 PMAVVDGHSVTKRLQSELMGLMMSNTPGISA-FPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFL   98 (175)
T ss_pred             CcccccCchHHHHHHHHHHHHHhcCCCCccc-CcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEee
Confidence            355566778899999999999  55678887 687 67999999999 99999999999999999999999999999999


Q ss_pred             eccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcc
Q 030126           98 TKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIF  177 (182)
Q Consensus        98 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~  177 (182)
                      |+                               +||||||..|.||||+|+++|+..++|++||.+||+||-+||..||+
T Consensus        99 tp-------------------------------c~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPL  147 (175)
T KOG0421|consen   99 TP-------------------------------CFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPL  147 (175)
T ss_pred             cc-------------------------------ccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcc
Confidence            99                               99999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 030126          178 FAF  180 (182)
Q Consensus       178 ~~~  180 (182)
                      +|-
T Consensus       148 Naq  150 (175)
T KOG0421|consen  148 NAQ  150 (175)
T ss_pred             hhH
Confidence            984

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-33  Score=226.12  Aligned_cols=118  Identities=29%  Similarity=0.593  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +..-|+++|++|  +..+|+.+..-+ +.|+++|.|.| ||++|+|+||.|+..+.||.+||.+||+++|.|+       
T Consensus         6 a~~ll~~qlk~L~~~pv~gf~~glvd-~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~-------   77 (171)
T KOG0425|consen    6 ASLLLLKQLKELQEEPVEGFSVGLVD-DSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSK-------   77 (171)
T ss_pred             hHHHHHHHHHHHhcCCCCcccccccc-CCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehh-------
Confidence            667788999998  556788887544 67999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcCCCC
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTVMLD  173 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~P~~  173 (182)
                                              |||||||.+|.+|+++|-             |.|+|++|+++||+||.+||++||.
T Consensus        78 ------------------------mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~  133 (171)
T KOG0425|consen   78 ------------------------MWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPND  133 (171)
T ss_pred             ------------------------hcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCC
Confidence                                    999999999999999993             5799999999999999999999999


Q ss_pred             CCcccc
Q 030126          174 HSIFFA  179 (182)
Q Consensus       174 ~sp~~~  179 (182)
                      +||++-
T Consensus       134 ~SPANV  139 (171)
T KOG0425|consen  134 ESPANV  139 (171)
T ss_pred             CCccch
Confidence            999973

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-33  Score=218.84  Aligned_cols=121  Identities=27%  Similarity=0.553  Sum_probs=113.7

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      ...|.|||.+||+++  +.|+||... |.++||++.|.+.| ||++|+|+||+|..++.||.+||..||+++|...    
T Consensus         2 ~~~AlkRLm~EykqLt~~~P~GIvAg-P~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~----   76 (165)
T KOG0426|consen    2 AGTALKRLMAEYKQLTLNPPEGIVAG-PINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCE----   76 (165)
T ss_pred             chhHHHHHHHHHHHHccCCCCcceeC-CCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecc----
Confidence            347899999999999  778998886 78899999999999 9999999999999999999999999999999988    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcC
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTV  170 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~  170 (182)
                                                 ++|||||.+|+||+++|.             |.|+|+++|+.||.++.+||++
T Consensus        77 ---------------------------~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaE  129 (165)
T KOG0426|consen   77 ---------------------------MFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAE  129 (165)
T ss_pred             ---------------------------cccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcC
Confidence                                       999999999999999993             6799999999999999999999


Q ss_pred             CCCCCcccc
Q 030126          171 MLDHSIFFA  179 (182)
Q Consensus       171 P~~~sp~~~  179 (182)
                      ||++|+.+-
T Consensus       130 PNdESgANv  138 (165)
T KOG0426|consen  130 PNDESGANV  138 (165)
T ss_pred             CCcccCccc
Confidence            999998863

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=8.3e-33  Score=215.51  Aligned_cols=115  Identities=33%  Similarity=0.684  Sum_probs=103.2

Q ss_pred             HHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHH
Q 030126           33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIH  109 (182)
Q Consensus        33 RL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~  109 (182)
                      ||++|++++  +.+.|+.+.... ++|+..|++.| ||++|||+||.|++.|.||++||++||+|+|.|+          
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~----------   69 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSE-DDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP----------   69 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEES-TTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS----------
T ss_pred             CHHHHHHHHhhCCCCCEEEEECC-CCChheEEEEEeccCccceecccccccccccccccccccccccccc----------
Confidence            899999999  789999997544 35999999999 9999999999999999999999999999999999          


Q ss_pred             HHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCC-CccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          110 MLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE-DWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e-~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                           ++||||+.+|.||+++|.. .|+|+++|.+||.+|+++|.+|+.++|++.
T Consensus        70 ---------------------i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~  119 (140)
T PF00179_consen   70 ---------------------IFHPNIDENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNE  119 (140)
T ss_dssp             ----------------------SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSH
T ss_pred             ---------------------cccccccccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchH
Confidence                                 9999999999999999985 599999999999999999999999999875

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.7e-32  Score=216.23  Aligned_cols=123  Identities=27%  Similarity=0.483  Sum_probs=113.1

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEE---ccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           27 QCAGELRLHKDITEL--NLPEACKIS---FPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~---~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      ++.+..||+.|.+.+  .+|-|+.+.   .+++..|++.|++.| |+.+|+||||.|.+.+.||++||..||+++|.++ 
T Consensus         2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p-   80 (158)
T KOG0424|consen    2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP-   80 (158)
T ss_pred             cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC-
Confidence            345689999999999  778898876   234456899999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCC--ccccCcHHHHHHHHHHhhcCCCCCCccc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTVMLDHSIFF  178 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~--W~p~~ti~siL~sI~~lL~~P~~~sp~~  178 (182)
                                                    .||||||.+|.|||++|.++  |+|+.||.+||.+||.||.+||..||+.
T Consensus        81 ------------------------------l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq  130 (158)
T KOG0424|consen   81 ------------------------------LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQ  130 (158)
T ss_pred             ------------------------------CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchh
Confidence                                          89999999999999999865  9999999999999999999999999998


Q ss_pred             cc
Q 030126          179 AF  180 (182)
Q Consensus       179 ~~  180 (182)
                      +-
T Consensus       131 ~e  132 (158)
T KOG0424|consen  131 TE  132 (158)
T ss_pred             hH
Confidence            64

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.97  E-value=1.9e-31  Score=208.31  Aligned_cols=115  Identities=31%  Similarity=0.676  Sum_probs=107.0

Q ss_pred             HHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHH
Q 030126           32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFI  108 (182)
Q Consensus        32 kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~  108 (182)
                      +||++|++++  +.+.|+.+. +. ++|+.+|++.| ||++|||+||.|++.|.||++||++||+|+|.++         
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~-~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~---------   70 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAE-PV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTK---------   70 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEE-EC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCC---------
Confidence            7999999999  446788776 44 57999999999 9999999999999999999999999999999988         


Q ss_pred             HHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCC-ccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          109 HMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED-WKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~-W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                            ++||||+.+|.||+++|... |+|++++++||.+|+++|.+|+.++|++.
T Consensus        71 ----------------------i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~  120 (141)
T cd00195          71 ----------------------IYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNA  120 (141)
T ss_pred             ----------------------cccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhH
Confidence                                  99999999999999999877 99999999999999999999999999864

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.7e-32  Score=221.42  Aligned_cols=116  Identities=25%  Similarity=0.525  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhcCC-----CCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           30 GELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        30 a~kRL~kE~~~l~~-----~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      +.+||.+|++++..     ..|+.+.. . ++|+.+.+..| ||++||||||+|.++|++|++||++||+|+|.|+    
T Consensus         4 ~~~ri~~e~k~v~~~~eisq~~I~ve~-v-n~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk----   77 (200)
T KOG0418|consen    4 AFKRINREQKEVLDDPEISQAGIIVEM-V-NENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK----   77 (200)
T ss_pred             HHHHHHHHHHHhccChhhhhcceEEEE-c-cCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee----
Confidence            68999999999933     34666653 2 58999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFF  178 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~  178 (182)
                                                 ||||||++ +|.||||+|.+.|++++|+.++|.+||++|+.|++.+|-=
T Consensus        78 ---------------------------IwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqD  126 (200)
T KOG0418|consen   78 ---------------------------IWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQD  126 (200)
T ss_pred             ---------------------------eecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHH
Confidence                                       99999998 9999999999999999999999999999999999999853

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.97  E-value=1.5e-30  Score=204.20  Aligned_cols=116  Identities=35%  Similarity=0.696  Sum_probs=107.2

Q ss_pred             HHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHH
Q 030126           32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFI  108 (182)
Q Consensus        32 kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~  108 (182)
                      +||++|++++  ..+.|+.+. +..++|+..|++.| ||++|+|+||.|++.|.||++||++||+|+|.++         
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~-~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~---------   70 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAY-PVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK---------   70 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEE-ECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC---------
Confidence            5999999998  556787764 44345999999999 9999999999999999999999999999999999         


Q ss_pred             HHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          109 HMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                            ++||||+.+|.||+++|. ++|+|++++++||.+|+++|.+|+.++|++.
T Consensus        71 ----------------------i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~  120 (145)
T smart00212       71 ----------------------IYHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNA  120 (145)
T ss_pred             ----------------------ceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence                                  999999999999999998 8999999999999999999999999999873

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.7e-28  Score=192.68  Aligned_cols=120  Identities=23%  Similarity=0.524  Sum_probs=110.2

Q ss_pred             cccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           26 KQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      ....+.+||+||+.++  +.|+|+...+   .||+.+|.+.+ |.++|.|+|.+|.++++||+.||++.|+|.|..+.  
T Consensus        12 ls~~at~RLqKEl~e~q~~pP~G~~~~v---~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~--   86 (161)
T KOG0427|consen   12 LSKIATNRLQKELSEWQNNPPTGFKHRV---TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPA--   86 (161)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcceeec---ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCC--
Confidence            3567889999999999  7788988873   68999999999 99999999999999999999999999999999883  


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcC------CCCCCc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV------MLDHSI  176 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~------P~~~sp  176 (182)
                                                  ..|||||+||.||||+|.++|+|++++.+|+.+|.+||+.      |.+++-
T Consensus        87 ----------------------------P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn~~  138 (161)
T KOG0427|consen   87 ----------------------------PLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDNDR  138 (161)
T ss_pred             ----------------------------CCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCccch
Confidence                                        8899999999999999999999999999999999999987      666666


Q ss_pred             cc
Q 030126          177 FF  178 (182)
Q Consensus       177 ~~  178 (182)
                      +|
T Consensus       139 Yv  140 (161)
T KOG0427|consen  139 YV  140 (161)
T ss_pred             hh
Confidence            65

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.9e-28  Score=189.96  Aligned_cols=120  Identities=29%  Similarity=0.564  Sum_probs=107.4

Q ss_pred             cHHHHHHHHHHHhcCC--CCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           28 CAGELRLHKDITELNL--PEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        28 ~~a~kRL~kE~~~l~~--~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      +.+.+||.||+.++..  ...+.- +..+++|+..|++.|-|++.||..|.|++.|.||.+||++||+|.|.|+      
T Consensus         1 m~a~~Rl~kEL~dl~~~~~~~~rn-~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tk------   73 (153)
T KOG0422|consen    1 MAAPRRLRKELADLQKNKMKFFRN-IEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTK------   73 (153)
T ss_pred             CchhHHHHHHHHHHHhccHHHHhh-hhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeee------
Confidence            3578999999999932  222221 3455789999999999999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccC-CCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-REDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L-~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               |||||||+.|.+|+.++ .|+|.|+.+.++||+++..++.+|+++.|+.+
T Consensus        74 -------------------------iYHpNVDe~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~  123 (153)
T KOG0422|consen   74 -------------------------IYHPNVDEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRI  123 (153)
T ss_pred             -------------------------eccCCCCCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchh
Confidence                                     99999999999999999 58899999999999999999999999999865

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.6e-25  Score=180.74  Aligned_cols=118  Identities=26%  Similarity=0.551  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhH
Q 030126           29 AGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNF  107 (182)
Q Consensus        29 ~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~  107 (182)
                      .+.+|+..|...|... +..+.+  ..+++.+++|.+ ||.++||+||+|++.+++|++||++.|.|.|.++        
T Consensus         3 ~~~rRid~Dv~KL~~s-~yeV~~--ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnK--------   71 (189)
T KOG0416|consen    3 SGKRRIDTDVMKLLMS-DYEVTI--INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNK--------   71 (189)
T ss_pred             CcccchhhHHHHHHhc-CCeEEE--ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceee--------
Confidence            3458999998887322 223332  247799999999 9999999999999999999999999999999999        


Q ss_pred             HHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHH-HHHHhhcCCCCCCccccc
Q 030126          108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIY-GLYHLFTVMLDHSIFFAF  180 (182)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~-sI~~lL~~P~~~sp~~~~  180 (182)
                                             ||||||+. +|.||||+++..|+|.+++-.|+. -|-.||..||+.+||+..
T Consensus        72 -----------------------IfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~e  123 (189)
T KOG0416|consen   72 -----------------------IFHPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGE  123 (189)
T ss_pred             -----------------------ccCCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccH
Confidence                                   99999998 999999999999999999999986 567899999999999853

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.4e-24  Score=180.65  Aligned_cols=112  Identities=24%  Similarity=0.446  Sum_probs=99.1

Q ss_pred             cccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           26 KQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      .+.++.|||+|||+.+  +..++|... |. ++|+.+||..+ ||++|||+||.|+.++.||++||++||.|+.+|+-++
T Consensus         2 a~k~a~kRl~keY~~l~k~Pv~~i~A~-P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR   79 (244)
T KOG0894|consen    2 ASKAAVKRLQKEYRALCKDPVPYIVAR-PN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR   79 (244)
T ss_pred             cchHHHHHHHHHHHHHHhCCchhhccC-CC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc
Confidence            3568899999999999  556666665 55 89999999999 9999999999999999999999999999999999766


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC---CCccccCcHHHHHHHHHHhhcCCC
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR---EDWKPVLNINTIIYGLYHLFTVML  172 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~---e~W~p~~ti~siL~sI~~lL~~P~  172 (182)
                      |+||-                                 ++||++-.   +.|+|.|+|++||.++.++|.+-.
T Consensus        80 Fktnt---------------------------------RLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~  119 (244)
T KOG0894|consen   80 FKTNT---------------------------------RLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS  119 (244)
T ss_pred             eecCc---------------------------------eEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence            66665                                 89998874   889999999999999999998743

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=8.1e-25  Score=178.78  Aligned_cols=120  Identities=28%  Similarity=0.533  Sum_probs=112.0

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      ..-..+.|.+|++++  ..|.||.+. ++ +.|+...++.| ||.+|||++|.|+.++.+..+||+.||+-.|.|+    
T Consensus         8 pp~vik~~~kEl~~l~~~PPdGIKV~-~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTK----   81 (223)
T KOG0423|consen    8 PPNVIKQLAKELKSLDESPPDGIKVV-VN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTK----   81 (223)
T ss_pred             ChHHHHHHHHHHHhcccCCCCceEEe-cC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeee----
Confidence            344678899999999  678899885 44 68999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                 ||||||..+|.||.+.|..+|+|.+.|..||..|.+||..|+|+|.++.
T Consensus        82 ---------------------------IFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNE  130 (223)
T KOG0423|consen   82 ---------------------------IFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNE  130 (223)
T ss_pred             ---------------------------eccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhH
Confidence                                       9999999999999999999999999999999999999999999998874

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.4e-19  Score=154.78  Aligned_cols=112  Identities=22%  Similarity=0.449  Sum_probs=98.3

Q ss_pred             ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      +....+.|||.||..++..|...+...|. +||+++|++.| ||.+|-|+||+|+.+|.||.+||++||.+-..|+-   
T Consensus         7 N~KnpaVkRlmkEa~El~~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN---   82 (314)
T KOG0428|consen    7 NLKNPAVKRLMKEAAELKDPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN---   82 (314)
T ss_pred             cccCHHHHHHHHHHHHhcCchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC---
Confidence            34568899999999999888777777787 89999999999 99999999999999999999999999999999993   


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC---CCccccCcHHHHHHHHHHhhcC
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR---EDWKPVLNINTIIYGLYHLFTV  170 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~---e~W~p~~ti~siL~sI~~lL~~  170 (182)
                                             ||+       .-+-+|||++-+   |.|-|+|+|.+.|++|..+|-.
T Consensus        83 -----------------------GRF-------E~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt  122 (314)
T KOG0428|consen   83 -----------------------GRF-------EVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT  122 (314)
T ss_pred             -----------------------Cce-------eeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence                                   332       224589999985   7899999999999999998853

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=5.6e-16  Score=152.16  Aligned_cols=111  Identities=25%  Similarity=0.443  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      ...+..+.|++-+  +.|.|+.+..  .++.+....+.| |+.+|||++|.|.|+|.||++||..||.|...+..     
T Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~vr~--~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~-----  923 (1101)
T KOG0895|consen  851 QWAKKVQTEWKILPLSLPSGIFVRA--YEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGG-----  923 (1101)
T ss_pred             HHHHHHHHHHHhhhccCCCceEEEe--chHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCc-----
Confidence            4445555566655  7799998873  367777778888 99999999999999999999999999999999873     


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------CCccccCcHHHHHHHHHHhhcC
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------EDWKPVLNINTIIYGLYHLFTV  170 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------e~W~p~~ti~siL~sI~~lL~~  170 (182)
                                              -.++||.|.+|+|||++|+       |.|+|..++.+||++||.|.-+
T Consensus       924 ------------------------~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~  971 (1101)
T KOG0895|consen  924 ------------------------VRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN  971 (1101)
T ss_pred             ------------------------eeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence                                    2789999999999999995       6799999999999999999865

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1e-13  Score=136.43  Aligned_cols=120  Identities=26%  Similarity=0.458  Sum_probs=104.7

Q ss_pred             CCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126           22 TPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (182)
Q Consensus        22 ~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t   98 (182)
                      +...-+....+|+++|++.+  ..|+|+.+. +. +.......+.| ||.+|||++|+|.|.|.||..||..||.|++.+
T Consensus       275 ~~k~hs~~~skrv~ke~~llskdlpEgifvr-p~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt  352 (1101)
T KOG0895|consen  275 SSKPHSKNWSKKVAKELKLLSKDLPEGIFVR-PD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLT  352 (1101)
T ss_pred             CCCccchhhHHHHHHHhhhhcccCCCCcccc-cc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEee
Confidence            44445666789999999999  678897776 54 67888899999 999999999999999999999999999999998


Q ss_pred             ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------CCcccc-CcHHHHHHHHHHhhcC
Q 030126           99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------EDWKPV-LNINTIIYGLYHLFTV  170 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------e~W~p~-~ti~siL~sI~~lL~~  170 (182)
                      ..                            ...+.||.|.+|+||+++|.       +.|+|. .++.++|.+||.++.+
T Consensus       353 ~~----------------------------~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~  404 (1101)
T KOG0895|consen  353 GG----------------------------GVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN  404 (1101)
T ss_pred             cc----------------------------ceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence            81                            22789999999999999994       789998 9999999999999876


Q ss_pred             C
Q 030126          171 M  171 (182)
Q Consensus       171 P  171 (182)
                      =
T Consensus       405 e  405 (1101)
T KOG0895|consen  405 E  405 (1101)
T ss_pred             c
Confidence            3

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=7.8e-12  Score=105.95  Aligned_cols=112  Identities=21%  Similarity=0.297  Sum_probs=97.3

Q ss_pred             HHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCC--CCeeEEeeccchhhhhH
Q 030126           32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD--APKVKCKTKVDIFFLNF  107 (182)
Q Consensus        32 kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~--pP~v~f~t~~~~~~~~~  107 (182)
                      --|+.|+..+  .+.+||++. |. ..|-..|-.+|.-..+.|.||+|+|.|.+|++||..  -|+|.|.+.        
T Consensus        22 y~llAEf~lV~~ekL~gIyvi-PS-yan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~--------   91 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVI-PS-YANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQS--------   91 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEc-cc-ccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeecc--------
Confidence            4566666665  677899995 66 678889999997778899999999999999999955  899999999        


Q ss_pred             HHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccc-cCcHHHHHHHHHHhhcCCCCCCc
Q 030126          108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKP-VLNINTIIYGLYHLFTVMLDHSI  176 (182)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p-~~ti~siL~sI~~lL~~P~~~sp  176 (182)
                                             ++||+|.+ ++.+|+.-.-..|+- ...|..||+.+|..+.+|+.+.+
T Consensus        92 -----------------------vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~  139 (258)
T KOG0429|consen   92 -----------------------VFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSID  139 (258)
T ss_pred             -----------------------ccccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchh
Confidence                                   89999998 999999877666977 47999999999999999998766

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=6.7e-10  Score=87.70  Aligned_cols=109  Identities=21%  Similarity=0.366  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhcCC---CCCceEEccCCCCC--cceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           30 GELRLHKDITELNL---PEACKISFPNGQDD--LMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        30 a~kRL~kE~~~l~~---~~g~~~~~~~~~~n--~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      ..-||.+|+.+-.+   +..++....+ .+|  +..|...| ||+.|+||+-+|.++|...++||..||.|+|.++    
T Consensus         6 rnfrlleele~g~kg~g~~~~s~gl~d-~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk----   80 (138)
T KOG0896|consen    6 RNFRLLEELEEGEKGIGDGTVSWGLED-DDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK----   80 (138)
T ss_pred             cchhhhhhhccccccccCceeeccccC-CCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE----
Confidence            34678888886633   2223443333 333  46899999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccC--CCCccccCcHHHHHHHHHHhhcC
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVL--REDWKPVLNINTIIYGLYHLFTV  170 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L--~e~W~p~~ti~siL~sI~~lL~~  170 (182)
                                                 +--.-|.. +|.|.-..+  .++|.-.++++.+|..++-++..
T Consensus        81 ---------------------------inm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~  123 (138)
T KOG0896|consen   81 ---------------------------INMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS  123 (138)
T ss_pred             ---------------------------eeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence                                       55556655 666665333  37899999999999999966543

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=3.8e-07  Score=70.56  Aligned_cols=64  Identities=11%  Similarity=0.265  Sum_probs=53.1

Q ss_pred             EEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCccccC
Q 030126           77 FVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDWKPVL  155 (182)
Q Consensus        77 f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W~p~~  155 (182)
                      ..+.+.|++|||+.||.++...+.                              +-.-.+-.+|.||+.+|. ++|+.++
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~------------------------------~~~Gyvl~ggAIcmellt~qgwssay   62 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPL------------------------------EDEGYVLEGGAICMELLTKQGWSSAY   62 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeec------------------------------ccCCEEecchhhHHHHHccccccchh
Confidence            456788999999999999977772                              333444568999999995 7899999


Q ss_pred             cHHHHHHHHHHhhcC
Q 030126          156 NINTIIYGLYHLFTV  170 (182)
Q Consensus       156 ti~siL~sI~~lL~~  170 (182)
                      +|+.++++|..++..
T Consensus        63 ~Ve~vi~qiaatlVk   77 (122)
T KOG0897|consen   63 EVERVIMQIAATLVK   77 (122)
T ss_pred             hHHHHHHHHHHHhhc
Confidence            999999999998865

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.28  E-value=1.8e-06  Score=67.41  Aligned_cols=70  Identities=20%  Similarity=0.439  Sum_probs=61.3

Q ss_pred             CCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceec---ccCCC
Q 030126           73 QNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCL---NVLRE  149 (182)
Q Consensus        73 egg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl---~~L~e  149 (182)
                      .|+.+.+.+.+|+.||..||.|....+.                           ++ ..=|||+.+|.+|+   ...-+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~---------------------------~~-~~~pHv~~~G~LCl~~~~~~~D   85 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPK---------------------------QF-PLLPHVESDGKLCLLDEELVLD   85 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCcc---------------------------cc-CccCeEcCCCeEEEecCCcccC
Confidence            6999999999999999999999988662                           11 26899999999999   77778


Q ss_pred             CccccCcHHHHHHHHHHhhcC
Q 030126          150 DWKPVLNINTIIYGLYHLFTV  170 (182)
Q Consensus       150 ~W~p~~ti~siL~sI~~lL~~  170 (182)
                      .|.|.-++..+|.+.+.+|.+
T Consensus        86 ~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   86 PWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             ccCHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999885

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.83  E-value=2.9e-05  Score=60.17  Aligned_cols=78  Identities=22%  Similarity=0.375  Sum_probs=52.4

Q ss_pred             cCCCCccCCcEEE--EEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCcee
Q 030126           66 KPDEGYYQNGTFV--FSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVC  143 (182)
Q Consensus        66 gp~~tpYegg~f~--~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iC  143 (182)
                      |--.=.|+|.+|.  +.|-+|.+||..||.+.+....                         +-.. ..+.+|+.+|+|.
T Consensus        37 Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~-------------------------~m~I-~~~~~Vd~~G~v~   90 (121)
T PF05743_consen   37 GTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTP-------------------------SMVI-KPSHHVDSNGRVY   90 (121)
T ss_dssp             EEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCC-------------------------TECC-GGCCCB-TTSBB-
T ss_pred             cCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCC-------------------------CCCc-CCCCeECCCCCEe
Confidence            4333458888885  5677999999999999886552                         0122 3344999999999


Q ss_pred             cccCCCCccc-cCcHHHHHHHHHHhhcC
Q 030126          144 LNVLREDWKP-VLNINTIIYGLYHLFTV  170 (182)
Q Consensus       144 l~~L~e~W~p-~~ti~siL~sI~~lL~~  170 (182)
                      +..|. +|++ ..++.+++..++..|..
T Consensus        91 ~pyL~-~W~~~~s~L~~lv~~l~~~F~~  117 (121)
T PF05743_consen   91 LPYLQ-NWNPPSSNLVDLVQELQAVFSE  117 (121)
T ss_dssp             SHHHH-T--TTTS-HHHHHHHHHHCCCH
T ss_pred             Cchhc-cCCCCCCCHHHHHHHHHHHHhH
Confidence            98885 5877 78999999988888764

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.018  Score=52.18  Aligned_cols=118  Identities=17%  Similarity=0.208  Sum_probs=78.8

Q ss_pred             cccHHHHHHHHHHHhc-CCCCC-ceEEccCCCCCcceeEEee-cCCCCccCCcEEEEE--EEcCCCCCCCCCeeEEeecc
Q 030126           26 KQCAGELRLHKDITEL-NLPEA-CKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFS--FEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l-~~~~g-~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~--i~fp~~YP~~pP~v~f~t~~  100 (182)
                      ....+.+.+...+.+. .+.++ -...+.+   .-..-...+ |---.+|+|.+|.+=  |=+.+.||..||.+.+....
T Consensus        17 ~~~~~~~~~l~lls~~~sL~P~t~tf~~~D---g~s~~ll~~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~   93 (365)
T KOG2391|consen   17 YKDLTRQDLLNLLSSFKSLRPKTDTFTHND---GRSRLLLQLDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTS   93 (365)
T ss_pred             chhhHHHHHHHHHHhccccCcccceEEecC---CCccchhhccCcccccccCCcccceEEEEecccCCCCCCeEEecCCc
Confidence            3445555666666655 22222 2232333   222222344 666778999998855  45899999999998776551


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccc-cCcHHHHHHHHHHhhcCCCC
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKP-VLNINTIIYGLYHLFTVMLD  173 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p-~~ti~siL~sI~~lL~~P~~  173 (182)
                                    .+-+            -.|-||+.+|.|.|..|. +|.| +.++..++..+.+.|.++++
T Consensus        94 --------------~M~i------------k~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~pP  140 (365)
T KOG2391|consen   94 --------------TMII------------KVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSEDPP  140 (365)
T ss_pred             --------------hhhh------------HHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCCCc
Confidence                          1111            239999999999999997 5866 68999999999999988554

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=96.44  E-value=0.0022  Score=51.71  Aligned_cols=101  Identities=16%  Similarity=0.262  Sum_probs=45.8

Q ss_pred             ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeE-EeecCCCCccCCc----------EEEEEEEcCCCCCCCCCe
Q 030126           25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFE-VSIKPDEGYYQNG----------TFVFSFEVPPIYPHDAPK   93 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~-v~igp~~tpYegg----------~f~~~i~fp~~YP~~pP~   93 (182)
                      ........||..||..|  ...+.....    +-..|- +.--+.+|-|.|-          -|.+++++|..||..||.
T Consensus        20 rd~~~W~~RLKEEy~aL--I~Yv~~nK~----~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pE   93 (161)
T PF08694_consen   20 RDGDLWVQRLKEEYQAL--IKYVENNKE----NDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPE   93 (161)
T ss_dssp             TSCHHHHHHHHHHHHHH--HHHHHHHHH----TT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS---
T ss_pred             CCHHHHHHHHHHHHHHH--HHHHHhccc----ccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcc
Confidence            34467889999999987  001111111    111221 1114445555543          356778899999999999


Q ss_pred             eEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCc---cccCcHHHHH
Q 030126           94 VKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDW---KPVLNINTII  161 (182)
Q Consensus        94 v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W---~p~~ti~siL  161 (182)
                      +..-.-.                          |    -..-.|..|+|||+... .-|   .|.+.|...+
T Consensus        94 i~lPeLd--------------------------G----KTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal  135 (161)
T PF08694_consen   94 IALPELD--------------------------G----KTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL  135 (161)
T ss_dssp             -B-GGGT--------------------------T----T-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred             eeccccC--------------------------C----chhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence            8653321                          1    12233459999998763 224   4556665543

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=94.59  E-value=0.1  Score=37.86  Aligned_cols=68  Identities=16%  Similarity=0.237  Sum_probs=38.2

Q ss_pred             HHHHHHHHhcCCCCCceEEccCCCCCcceeEEeec---CCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           32 LRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK---PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        32 kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~ig---p~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      .+...|+..|..--+-.. ......+...+.+.+.   ...+.-....+.+.+.||++||..+|.|.+.+..
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            456677776622111111 1111234445555552   2344445668999999999999999999998884

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=93.98  E-value=0.077  Score=43.22  Aligned_cols=64  Identities=20%  Similarity=0.377  Sum_probs=50.8

Q ss_pred             EEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCC-----CceecccCC-CCcc
Q 030126           79 FSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-----GNVCLNVLR-EDWK  152 (182)
Q Consensus        79 ~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~-----G~iCl~~L~-e~W~  152 (182)
                      +.|.|+.+||..+|.|.+.-+                            .|...+||+...     ..+|+..-. ..|.
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~----------------------------dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~  108 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRK----------------------------DFPGNLPHQNPGPEGEPVSLCLYEGPWSEWR  108 (162)
T ss_pred             EEEEecCCCCCCCccchhhHh----------------------------hCCCCCCccCCCCCCCCccceEecCCHHHhh
Confidence            568999999999998877766                            222335888765     789996653 5699


Q ss_pred             ccCcHHHHHHHHHHhhcC
Q 030126          153 PVLNINTIIYGLYHLFTV  170 (182)
Q Consensus       153 p~~ti~siL~sI~~lL~~  170 (182)
                      +.++++.+|..|...|.+
T Consensus       109 ~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen  109 PSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             hccCHHHHHHHHHHHHHH
Confidence            999999999999998875

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=93.81  E-value=0.45  Score=34.22  Aligned_cols=40  Identities=20%  Similarity=0.472  Sum_probs=28.7

Q ss_pred             eeEEeecCCC--CccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           60 NFEVSIKPDE--GYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        60 ~w~v~igp~~--tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      .+.+.+.+..  +.-..-.+.+.+.+|++||..+|.|.+.+.
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECC
Confidence            4555553332  233345688999999999999999998766

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.82  E-value=0.19  Score=40.26  Aligned_cols=67  Identities=16%  Similarity=0.247  Sum_probs=41.3

Q ss_pred             ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCc----------EEEEEEEcCCCCCCCCCe
Q 030126           25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHDAPK   93 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg----------~f~~~i~fp~~YP~~pP~   93 (182)
                      ...-....||..||+.+     |... .+..++-..|--.- -+.+|-|-|.          .|-+++.+|-.||..+|.
T Consensus        23 rd~~~wvqrlkeey~sl-----i~yv-qnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape   96 (167)
T KOG3357|consen   23 RDGDLWVQRLKEEYQSL-----IAYV-QNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE   96 (167)
T ss_pred             ccchHHHHHHHHHHHHH-----HHHH-HhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence            44556778999999987     1111 11112223332222 5566666664          356777889999999999


Q ss_pred             eEEe
Q 030126           94 VKCK   97 (182)
Q Consensus        94 v~f~   97 (182)
                      +..-
T Consensus        97 ialp  100 (167)
T KOG3357|consen   97 IALP  100 (167)
T ss_pred             cccc
Confidence            8654

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=91.22  E-value=1.7  Score=34.11  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             CCcceeEEee--cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCcccccc
Q 030126           56 DDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYH  133 (182)
Q Consensus        56 ~n~~~w~v~i--gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H  133 (182)
                      +.-..|-+.=  ..+.+.|....-.+-|.+|+.||..+|.+-+..+.                   |+. +.|+.    .
T Consensus        21 eg~~~~lii~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~-------------------L~~-~~G~~----i   76 (122)
T PF14462_consen   21 EGGRRWLIIKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP-------------------LKL-ADGGP----I   76 (122)
T ss_pred             eCCccEEEEeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc-------------------eEc-cCCCc----C
Confidence            4445676644  45677799999999999999999999887776662                   111 11111    1


Q ss_pred             Cccc-----CCCceec--ccCCCCcccc-CcHHHHHHHHHHhhc
Q 030126          134 PNID-----LEGNVCL--NVLREDWKPV-LNINTIIYGLYHLFT  169 (182)
Q Consensus       134 PnI~-----~~G~iCl--~~L~e~W~p~-~ti~siL~sI~~lL~  169 (182)
                      ||=.     ..|+.=-  +--...|+|. -+|.+.|.-|...|.
T Consensus        77 P~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen   77 PNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence            1100     1343211  1114569995 689999999988875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		3e-39
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		1e-35
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		3e-22
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		3e-17
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		4e-17
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		2e-10
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-10
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		2e-10
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		3e-10
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		3e-10
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		3e-10
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-10
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		3e-10
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		3e-10
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		3e-10
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		4e-10
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		4e-10
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		5e-10
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-10
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		6e-10
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		7e-10
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		1e-09
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		1e-09
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		1e-09
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		1e-09
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-09
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		1e-09
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		1e-09
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		2e-09
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-09
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		3e-09
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		3e-09
3jvz_A	146	E2~ubiquitin-Hect Length = 146		5e-09
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-09
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		1e-08
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		1e-08
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-08
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		2e-08
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		2e-08
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-08
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		2e-08
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		2e-08
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		2e-08
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		8e-08
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		9e-08
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		1e-07
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		1e-07
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		1e-07
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		3e-07
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		3e-07
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-07
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		7e-07
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		8e-07
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		1e-06
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		2e-06
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		2e-06
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		2e-06
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		3e-06
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		3e-06
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		4e-06
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		5e-06
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		5e-06
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		5e-06
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		5e-06
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		5e-06
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		6e-06
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		6e-06
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		6e-06
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		1e-05
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-05
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		2e-05
1jas_A	152	Hsubc2b Length = 152		2e-05
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		3e-05
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		6e-05
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		7e-05
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		7e-05
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		8e-05
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		1e-04
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		2e-04
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		4e-04
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		4e-04
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		5e-04
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		6e-04
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		8e-04
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		8e-04
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		8e-04
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		8e-04

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 108/168 (64%), Gaps = 37/168 (22%)
Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LF +K+++KE+ + ++     KK  A +LR+ KDI ELNLP+ C ISF +  DDL+N
Sbjct: 3   MIKLFSLKQQKKEEEKGSS-----KKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLN 56
Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           F++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T                      
Sbjct: 57  FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET---------------------- 94
Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                     VYHPNIDLEGNV LN+LREDWKPVL IN+IIYGL +LF
Sbjct: 95  ---------MVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLF 133

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 91/140 (65%), Gaps = 32/140 (22%)
Query: 29  AGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYP 88
           A +LR+ KDI ELNLP+ C ISF +  DDL+NF++ I PDEG+Y++G FVFSF+V   YP
Sbjct: 6   AAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYP 64
Query: 89  HDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR 148
           HD PKVKC+T                                VYHPNIDLEGNVCLN+LR
Sbjct: 65  HDPPKVKCET-------------------------------XVYHPNIDLEGNVCLNILR 93
Query: 149 EDWKPVLNINTIIYGLYHLF 168
           EDWKPVL IN+IIYGL +LF
Sbjct: 94  EDWKPVLTINSIIYGLQYLF 113

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 38/173 (21%)
Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACK---ISFPNGQDD 57
           M++L ++++K++++ EN++   P     A  +RL +D+  L+LP       I+ P+  D 
Sbjct: 3   MLKLRQLQKKKQKENENSSSIQP--NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADR 60
Query: 58  LMN--FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFN 115
             +   EV ++PDEGYY  G+  F+ +   +YP + PKV C  K+               
Sbjct: 61  SQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKI--------------- 105
Query: 116 HAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
                           +HPNIDL+GNVCLN+LREDW P L++ +II GL  LF
Sbjct: 106 ----------------FHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLF 142

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 40/163 (24%)
Query: 19  TGGTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGT 76
           T     ++    +  L K++ EL  NLP  CK+ FP+  + L  F++++ PDEGYYQ G 
Sbjct: 4   TASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGK 62
Query: 77  FVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNI 136
           F F  EVP  Y    PKVKC TK                               ++HPNI
Sbjct: 63  FQFETEVPDAYNMVPPKVKCLTK-------------------------------IWHPNI 91
Query: 137 DLEGNVCLNVLRE------DWKPVLNINTIIYGLYHLFTVMLD 173
              G +CL++LRE       W P   +  +++GL  LFT +L+
Sbjct: 92  TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLN 134

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 40/148 (27%)
Query: 34  LHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDA 91
           L K++ EL  NLP  CK+ FP+  + L  F++++ PDEGYYQ G F F  EVP  Y    
Sbjct: 19  LVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVP 77
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE-- 149
           PKVKC TK                               ++HPNI   G +CL++LRE  
Sbjct: 78  PKVKCLTK-------------------------------IWHPNITETGEICLSLLREHS 106
Query: 150 ----DWKPVLNINTIIYGLYHLFTVMLD 173
                W P   +  +++GL  LFT +L+
Sbjct: 107 IDGTGWAPTRTLKDVVWGLNSLFTDLLN 134

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 32/138 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+ K++ E+     C  S     DD+ ++  +I  PD+  YQ G F      P  YP  A
Sbjct: 8   RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKA 67
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           P+V   TKV                               YHPNI+  G +CL++L++ W
Sbjct: 68  PRVTFMTKV-------------------------------YHPNINKNGVICLDILKDQW 96
Query: 152 KPVLNINTIIYGLYHLFT 169
            P L ++ ++  +  L T
Sbjct: 97  SPALTLSRVLLSISSLLT 114

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 10  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 70  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 98
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 99  SPALTISKVLLSICSLL 115

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 15  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 75  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 103
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 104 SPALTISKVLLSICSLL 120

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 32/115 (27%)
Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
           D+L  F+V+I+ P++  Y++G F     +P  YP +APKV+  TK+              
Sbjct: 30  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-------------- 75
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                            YHPNID  G +CL+VL+ +W P L I T++  +  L  
Sbjct: 76  -----------------YHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLA 113

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 67  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 96  SPALTISKVLLSICSLL 112

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 67  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 96  SPALTISKVLLSICSLL 112

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 23  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 83  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 111
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 112 SPALTISKVLLSICSLL 128

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 65  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 93
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 94  SPALTISKVLLSICSLL 110

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 32/115 (27%)
Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
           D+L  F+V+I+ P++  Y++G F     +P  YP +APKV+  TK+              
Sbjct: 32  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-------------- 77
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                            YHPNID  G +CL+VL+ +W P L I T++  +  L  
Sbjct: 78  -----------------YHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLA 115

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 36/140 (25%)
Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++++L  + P +C    P G DDL +++ SI  P +  Y  G F  S   P  YP 
Sbjct: 6   RIAKELSDLERDPPTSCSAG-PVG-DDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPF 63
Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PK+   TK+                               YHPNI+  GN+CL++L++
Sbjct: 64  KPPKISFTTKI-------------------------------YHPNINANGNICLDILKD 92
Query: 150 DWKPVLNINTIIYGLYHLFT 169
            W P L ++ ++  +  L T
Sbjct: 93  QWSPALTLSKVLLSICSLLT 112

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 67  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 96  GPALTISKVLLSICSLL 112

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 34/139 (24%)
Query: 33  RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+++++ +L   P +   + P G DDL +++ +I  P +  Y  G F  S   P  YP  
Sbjct: 5   RINRELADLGKDPPSSSSAGPVG-DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            PKV   T++                               YHPNI+  G++CL++LR+ 
Sbjct: 64  PPKVNFTTRI-------------------------------YHPNINSNGSICLDILRDQ 92
Query: 151 WKPVLNINTIIYGLYHLFT 169
           W P L I+ ++  +  L T
Sbjct: 93  WSPALTISKVLLSISSLLT 111

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+ K++ +L      + S     DDL +++ +I  P E  YQ G F  +   P  YP   
Sbjct: 8   RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 67
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 68  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 96
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 97  SPALTISKVLLSICSLL 113

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL+ LR  W
Sbjct: 67  PKVAFTTRI-------------------------------YHPNINSNGSICLDALRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 96  SPALTISKVLLSICSLL 112

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEV-SIKPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++  ++ P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 67  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 96  SPALTISKVLLSICSLL 112

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+ K++ +L      + S     DDL +++ +I  P +  YQ G F  +   P  YP   
Sbjct: 10  RIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   TK+                               YHPNI+  G++CL++LR  W
Sbjct: 70  PKVAFTTKI-------------------------------YHPNINSNGSICLDILRSQW 98
Query: 152 KPVLNINTIIYGLYHLF 168
            P L ++ ++  +  L 
Sbjct: 99  SPALTVSKVLLSICSLL 115

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 15  RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 75  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 103
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 104 SPALTISKVLLSICSLL 120

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 67  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 96  SPALTISKVLLSICSLL 112

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 13  RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 72
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 73  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 101
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 102 SPALTISKVLLSICSLL 118

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 4   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++CL++LR  W
Sbjct: 64  PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 92
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 93  SPALTISKVLLSICSLL 109

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 34/138 (24%)
Query: 33  RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++++L   P A   + P G DDL +++ +I  P +  YQ G F  +   P  YP  
Sbjct: 23  RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            PK+   TK+                               YHPNI+  G++CL++LR  
Sbjct: 82  PPKIAFTTKI-------------------------------YHPNINSNGSICLDILRSQ 110
Query: 151 WKPVLNINTIIYGLYHLF 168
           W P L ++ ++  +  L 
Sbjct: 111 WSPALTVSKVLLSICSLL 128

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 34/138 (24%)
Query: 33  RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++++L   P A   + P G DDL +++ +I  P +  YQ G F  +   P  YP  
Sbjct: 11  RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            PK+   TK+                               YHPNI+  G++CL++LR  
Sbjct: 70  PPKIAFTTKI-------------------------------YHPNINSNGSICLDILRSQ 98
Query: 151 WKPVLNINTIIYGLYHLF 168
           W P L ++ ++  +  L 
Sbjct: 99  WSPALTVSKVLLSICSLL 116

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 34/138 (24%)
Query: 33  RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++++L   P A   + P G DDL +++ +I  P +  YQ G F  +   P  YP  
Sbjct: 7   RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            PK+   TK+                               YHPNI+  G++CL++LR  
Sbjct: 66  PPKIAFTTKI-------------------------------YHPNINSNGSICLDILRSQ 94
Query: 151 WKPVLNINTIIYGLYHLF 168
           W P L ++ ++  +  L 
Sbjct: 95  WSPALTVSKVLLSICSLL 112

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++ L++LR  W
Sbjct: 67  PKVAFTTRI-------------------------------YHPNINSNGSISLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 96  SPALTISKVLLSICSLL 112

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 32/115 (27%)
Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
           D+L  F+V+I+ P++  Y++G F     +P  YP +APKV+  TK+              
Sbjct: 30  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-------------- 75
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                            YHPNID  G + L+VL+ +W P L I T++  +  L  
Sbjct: 76  -----------------YHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLA 113

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 8   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 67
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++ L++LR  W
Sbjct: 68  PKVAFTTRI-------------------------------YHPNINSNGSISLDILRSQW 96
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 97  SPALTISKVLLSICSLL 113

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 32/138 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++ +L+       S     DD+ +++ +I  P++  Y  G F  +   P  YP   
Sbjct: 25  RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP 84
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   TK+                               YHPNI+ +G +CL++L++ W
Sbjct: 85  PKVNFTTKI-------------------------------YHPNINSQGAICLDILKDQW 113
Query: 152 KPVLNINTIIYGLYHLFT 169
            P L I+ ++  +  L T
Sbjct: 114 SPALTISKVLLSISSLLT 131

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 4   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++ L++LR  W
Sbjct: 64  PKVAFTTRI-------------------------------YHPNINSNGSISLDILRSQW 92
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 93  SPALKISKVLLSICSLL 109

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 23  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++ L++LR  W
Sbjct: 83  PKVAFTTRI-------------------------------YHPNINSNGSIXLDILRSQW 111
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 112 SPALTISKVLLSICSLL 128

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+HK++ +L  + P  C+   P G DD+ +++ +I  P++  YQ G F  +   P  YP 
Sbjct: 5   RIHKELNDLARDPPAQCRAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PKV   T++                               YHP I+  G++ L++LR 
Sbjct: 63  KPPKVAFTTRI-------------------------------YHPAINSNGSISLDILRS 91
Query: 150 DWKPVLNINTIIYGLYHLF 168
            W P L I+ ++  +  L 
Sbjct: 92  QWSPALTISKVLLSICSLL 110

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 5   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PKV   T++                               YHPNI+  G++ L++LR  W
Sbjct: 65  PKVAFTTRI-------------------------------YHPNINSNGSISLDILRSQW 93
Query: 152 KPVLNINTIIYGLYHLF 168
            P L I+ ++  +  L 
Sbjct: 94  SPALTISKVLLSICSLL 110

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 32/115 (27%)
Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
           D+L  F+V+I+ P++  Y++G F     +P  YP +APKV+  TK+              
Sbjct: 30  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-------------- 75
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                            YHP ID  G + L+VL+ +W P L I T++  +  L  
Sbjct: 76  -----------------YHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLA 113

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++++L  + P  C+   P G DDL +++ +I  P +  YQ G F  +   P  YP 
Sbjct: 11  RIQKELSDLQRDPPAHCRAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PK+   TK                               +YHPNI+  G++ L++LR 
Sbjct: 69  KPPKIAFTTK-------------------------------IYHPNINSNGSIKLDILRS 97
Query: 150 DWKPVLNINTIIYGLYHLF 168
            W P L ++ ++  +  L 
Sbjct: 98  QWSPALTVSKVLLSICSLL 116

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           P +  ++ GTF     +P  YP  APKV+  TK+                          
Sbjct: 42  PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 75
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
                YHPN+D  G +CL++L++ W P L I T++  +  L + 
Sbjct: 76  -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           P +  ++ GTF     +P  YP  APKV+  TK+                          
Sbjct: 47  PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 80
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
                YHPN+D  G +CL++L++ W P L I T++  +  L + 
Sbjct: 81  -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 119

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           P +  ++ GTF     +P  YP  APKV+  TK+                          
Sbjct: 44  PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 77
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
                YHPN+D  G +CL++L++ W P L I T++  +  L + 
Sbjct: 78  -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           P +  ++ GTF     +P  YP  APKV+  TK+                          
Sbjct: 45  PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 78
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
                YHPN+D  G +CL++L++ W P L I T++  +  L + 
Sbjct: 79  -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 117

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           P +  ++ GTF     +P  YP  APKV+  TK+                          
Sbjct: 40  PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 73
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
                YHPN+D  G +CL++L++ W P L I T++  +  L + 
Sbjct: 74  -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 112

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 31/103 (30%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           PD   Y+ GT+     +P  YP + PKV+  TK+                          
Sbjct: 40  PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI-------------------------- 73
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                YHPNID  G +CL++L++ W P L I T++  +  L +
Sbjct: 74  -----YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 111

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 31/103 (30%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           PD   Y+ GT+     +P  YP + PKV+  TK+                          
Sbjct: 40  PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI-------------------------- 73
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                YHPNID  G +CL++L++ W P L I T++  +  L +
Sbjct: 74  -----YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 111

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 39/144 (27%)
Query: 29  AGELRLHKDITELNLPEACKI-SFPNGQDD---LMNFEVSIKPDEGYYQNGTFVFSFEVP 84
           A   RL K++ E+     C + +F N Q D   L+ ++  I PD   Y  G F      P
Sbjct: 2   AASRRLMKELEEIR---KCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 58
Query: 85  PIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCL 144
             YP   PK+  KTK+                               YHPNID +G VCL
Sbjct: 59  AEYPFKPPKITFKTKI-------------------------------YHPNIDEKGQVCL 87
Query: 145 NVLR-EDWKPVLNINTIIYGLYHL 167
            V+  E+WKP    + +I  L  L
Sbjct: 88  PVISAENWKPATKTDQVIQSLIAL 111

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 39/144 (27%)
Query: 29  AGELRLHKDITELNLPEACKI-SFPNGQDD---LMNFEVSIKPDEGYYQNGTFVFSFEVP 84
           A   RL K++ E+     C + +F N Q D   L+ ++  I PD   Y  G F      P
Sbjct: 4   AASRRLMKELEEIR---KCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 60
Query: 85  PIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCL 144
             YP   PK+  KTK+                               YHPNID +G VCL
Sbjct: 61  AEYPFKPPKITFKTKI-------------------------------YHPNIDEKGQVCL 89
Query: 145 NVLR-EDWKPVLNINTIIYGLYHL 167
            V+  E+WKP    + +I  L  L
Sbjct: 90  PVISAENWKPATKTDQVIQSLIAL 113

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 36/140 (25%)
Query: 33  RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++ E+ L  P  C  + P G D++  +  +I  P    Y+ G F       P YP 
Sbjct: 7   RIQKELAEITLDPPPNCS-AGPKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PKV  +T++                               YH NI+ +G +CL++L++
Sbjct: 65  KPPKVTFRTRI-------------------------------YHCNINSQGVICLDILKD 93
Query: 150 DWKPVLNINTIIYGLYHLFT 169
           +W P L I+ ++  +  L T
Sbjct: 94  NWSPALTISKVLLSICSLLT 113

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           RL +D  +L       +S    +D+++ +E  I  P E  +++GTF  S E    YP+  
Sbjct: 11  RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 70
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           P VK  +K+                               +HPN+  +G++CL++L+  W
Sbjct: 71  PTVKFISKM-------------------------------FHPNVYADGSICLDILQNRW 99
Query: 152 KPVLNINTIIYGLYHLF 168
            P  ++  I+  +  L 
Sbjct: 100 SPTYDVAAILTSIQSLL 116

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           RL +D  +L       +S    +D+++ +E  I  P E  +++GTF  S E    YP+  
Sbjct: 8   RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 67
Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           P VK  +K+                               +HPN+  +G++CL++L+  W
Sbjct: 68  PTVKFISKM-------------------------------FHPNVYADGSICLDILQNRW 96
Query: 152 KPVLNINTIIYGLYHLF 168
            P  ++  I+  +  L 
Sbjct: 97  SPTYDVAAILTSIQSLL 113

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 36/140 (25%)
Query: 33  RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++ ++ L  P  C  + P G D++  +  +I  P    Y+ G F       P YP 
Sbjct: 52  RIQKELADITLDPPPNCS-AGPKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PKV  +T++                               YH NI+ +G +CL++L++
Sbjct: 110 KPPKVTFRTRI-------------------------------YHCNINSQGVICLDILKD 138
Query: 150 DWKPVLNINTIIYGLYHLFT 169
           +W P L I+ ++  +  L T
Sbjct: 139 NWSPALTISKVLLSICSLLT 158

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 34/149 (22%)
Query: 22  TPVKKQCAGELRLHKDITELNLPEACKIS-FPNGQDDLMNFEVSIK-PDEGYYQNGTFVF 79
           T  K++ +   RL +++  L +     I+ FP+G D+L  +  ++  P +  Y++  +  
Sbjct: 2   TTSKERHSVSKRLQQELRTLLMSGDPGITAFPDG-DNLFKWVATLDGPKDTVYESLKYKL 60
Query: 80  SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE 139
           + E P  YP+  P VK  T                                 +HPN+D  
Sbjct: 61  TLEFPSDYPYKPPVVKFTTPC-------------------------------WHPNVDQS 89
Query: 140 GNVCLNVLREDWKPVLNINTIIYGLYHLF 168
           GN+CL++L+E+W    ++ TI+  L  L 
Sbjct: 90  GNICLDILKENWTASYDVRTILLSLQSLL 118

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 36/158 (22%)
Query: 15  AENNTGGTPVKKQCAGEL--RLHKDITELNLPEACKIS-FPNGQDDLMNFEVSIKPDEGY 71
           A    G  P      G +  RL +++  L +     IS FP   D+L  +  +I    G 
Sbjct: 14  AAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGT 72
Query: 72  -YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQ 130
            Y++  +  S E P  YP++AP VK        FL                         
Sbjct: 73  VYEDLRYKLSLEFPSGYPYNAPTVK--------FLT-----------------------P 101
Query: 131 VYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
            YHPN+D +GN+ L++L+E W  + ++ TI+  +  L 
Sbjct: 102 CYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLL 139

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 33/140 (23%)
Query: 32  LRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHD 90
           LRL K++ ++      +I       +   +   IK  EG  Y+ G F  +  +P  YP++
Sbjct: 26  LRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYN 85
Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-GNVCLNVLRE 149
            PK+K  TK+                               +HPNI  + G +CL+VL+ 
Sbjct: 86  PPKIKFVTKI-------------------------------WHPNISSQTGAICLDVLKN 114
Query: 150 DWKPVLNINTIIYGLYHLFT 169
           +W P L I T +  +  L +
Sbjct: 115 EWSPALTIRTALLSIQALLS 134

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 34/119 (28%)
Query: 53  NGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHML 111
           +G  DL  +E  I   EG  +  G +  + E P  YP   PKVK       F   F    
Sbjct: 35  DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVK-------FPAGF---- 83
Query: 112 LLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                               YHPN+   G +CL++L E  DW+P + +  I+ G+  L 
Sbjct: 84  --------------------YHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 122

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 34/119 (28%)
Query: 53  NGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHML 111
           +G  DL  +E  I   EG  +  G +  + E P  YP   PKVK       F   F    
Sbjct: 33  DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVK-------FPAGF---- 81
Query: 112 LLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                               YHPN+   G +CL++L E  DW+P + +  I+ G+  L 
Sbjct: 82  --------------------YHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 80  --------------FEPPL--FHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 32/98 (32%)
Query: 72  YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV 131
           Y+ G FV   EVP  YP   PK++  TKV                               
Sbjct: 47  YEGGKFVVDIEVPMEYPFKPPKMQFDTKV------------------------------- 75
Query: 132 YHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
           YHPNI  + G +CL++LR  W PV+ + + +  L  L 
Sbjct: 76  YHPNISSVTGAICLDILRNAWSPVITLKSALISLQALL 113

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 32/99 (32%)
Query: 72  YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV 131
           Y+ G F     +PP YP++ PK+K  TK+                               
Sbjct: 89  YEGGHFTLDIVIPPDYPYNPPKMKFVTKI------------------------------- 117
Query: 132 YHPNIDLE-GNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
           +HPNI  + G +CL++L+ +W P L I T +  +  +  
Sbjct: 118 WHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLA 156

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 38/149 (25%)
Query: 21  GTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVF 79
            TP +K      RL +D   L       IS     +++M +   I  PD+  +  GTF  
Sbjct: 2   STPARK------RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL 55
Query: 80  SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE 139
           S +    YP+  P V+           F+                     +++HPNI  +
Sbjct: 56  SLQFSEDYPNKPPTVR-----------FVS--------------------RMFHPNIYAD 84
Query: 140 GNVCLNVLREDWKPVLNINTIIYGLYHLF 168
           G++CL++L+  W P+ ++  I+  +  L 
Sbjct: 85  GSICLDILQNQWSPIYDVAAILTSIQSLL 113

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 80  --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 33  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 77
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 78  --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 121

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 80  --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 76
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 77  --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 78
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 79  --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 80  --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 78
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 79  --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 37  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 81
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 82  --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 125

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 32/98 (32%)
Query: 72  YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV 131
           Y+ G FV   EVP  YP   PK++  TKV                               
Sbjct: 46  YEGGKFVVDIEVPMEYPFKPPKMQFDTKV------------------------------- 74
Query: 132 YHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
           YHPNI  + G +CL++L+  W PV+ + + +  L  L 
Sbjct: 75  YHPNISSVTGAICLDILKNAWSPVITLKSALISLQALL 112

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 36/131 (27%)
Query: 34  LHKDITELNL--PEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHD 90
           ++K++T L    P+  K+ FPN ++DL + +V+I+  EG  Y  G F     +   +P  
Sbjct: 18  VYKEVTTLTADPPDGIKV-FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            PK         +FL                        +++HPN+   G +C+NVL+ D
Sbjct: 76  PPKG--------YFLT-----------------------KIFHPNVGANGEICVNVLKRD 104
Query: 151 WKPVLNINTII 161
           W   L I  ++
Sbjct: 105 WTAELGIRHVL 115

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HP +   G VCL++L E  DW+P + I  I+ G+  L 
Sbjct: 80  --------------FEPPL--FHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 38/149 (25%)
Query: 21  GTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVF 79
            TP ++      RL +D   L       +S    ++++M +   I  P+   +++GTF  
Sbjct: 2   STPARR------RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKL 55
Query: 80  SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE 139
             E    YP+  P V+  +K+                               +HPN+  +
Sbjct: 56  VIEFSEEYPNKPPTVRFLSKM-------------------------------FHPNVYAD 84
Query: 140 GNVCLNVLREDWKPVLNINTIIYGLYHLF 168
           G++CL++L+  W P  ++++I+  +  L 
Sbjct: 85  GSICLDILQNRWSPTYDVSSILTSIQSLL 113

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 38/128 (29%)
Query: 45  EACKISFPNGQDDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI 102
           + CK S  +G  DLMN++V I  KP   + + G +  +   P  YP   PK  C+    +
Sbjct: 33  KPCKSS--DGGLDLMNWKVGIPGKPKTSW-EGGLYKLTMAFPEEYPTRPPK--CRFTPPL 87
Query: 103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED--WKPVLNINTI 160
           F                             HPN+   G VCL++L E+  WKP + I  I
Sbjct: 88  F-----------------------------HPNVYPSGTVCLSILNEEEGWKPAITIKQI 118
Query: 161 IYGLYHLF 168
           + G+  L 
Sbjct: 119 LLGIQDLL 126

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 45/128 (35%)
Query: 56  DDLMNFEV-SIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
           +D+  +EV  I P +  Y+ G F    + P  YP   PK+K           FI      
Sbjct: 31  NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMK-----------FIS----- 74
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-------------REDWKPVLNINTII 161
                          +++HPNID EGNVC+++L              E W PV  + TI+
Sbjct: 75  ---------------EIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETIL 119
Query: 162 YGLYHLFT 169
             +  + T
Sbjct: 120 LSVISMLT 127

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 35/102 (34%)
Query: 72  YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV 131
           Y+ G F     +P  YP + P+++        FL  I                       
Sbjct: 48  YEKGVFKLEVIIPERYPFEPPQIR--------FLTPI----------------------- 76
Query: 132 YHPNIDLEGNVCLNVL----REDWKPVLNINTIIYGLYHLFT 169
           YHPNID  G +CL+VL    +  W+P LNI T++  +  L +
Sbjct: 77  YHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMS 118

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 38/149 (25%)
Query: 21  GTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVF 79
            TP ++      RL +D   +       +S     D++M +   I  P +  Y++GTF  
Sbjct: 2   STPARR------RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRL 55
Query: 80  SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE 139
             E    YP+  P VK        FL+                       +++HPN+   
Sbjct: 56  LLEFDEEYPNKPPHVK--------FLS-----------------------EMFHPNVYAN 84
Query: 140 GNVCLNVLREDWKPVLNINTIIYGLYHLF 168
           G +CL++L+  W P  ++ +I+  +  LF
Sbjct: 85  GEICLDILQNRWTPTYDVASILTSIQSLF 113

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 76
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G V L++L E  DW+P + I  I+ G+  L 
Sbjct: 77  --------------FEPPL--FHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELL 120

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 34/120 (28%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K               
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 76
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
                         FE  L  +HPN+   G V L++L E  DW+P + I  I+ G+  L 
Sbjct: 77  --------------FEPPL--FHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELL 120

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 37/142 (26%)
Query: 23  PVKKQCAGELR--LHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVF 79
           P     AG LR    +++  + L  + +  +P+  D +  F V  K  EG  Y++GT++ 
Sbjct: 2   PGSMSGAGNLRSNRRREMDYMRLCNSTRKVYPS--DTVAEFWVEFKGPEGTPYEDGTWML 59
Query: 80  SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-L 138
             ++P  YP  +P         I F N                       ++ HPN+D  
Sbjct: 60  HVQLPSDYPFKSPS--------IGFCN-----------------------RILHPNVDER 88
Query: 139 EGNVCLNVLREDWKPVLNINTI 160
            G+VCL+V+ + W P+  +  I
Sbjct: 89  SGSVCLDVINQTWTPMYQLENI 110

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 32/153 (20%)
Query: 20  GGTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEG-YYQNGT 76
           G  P     + + RL K++  L  + P    ++  + Q+ +  + V ++   G  Y+   
Sbjct: 13  GLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEK 72
Query: 77  FVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNI 136
           F   F+    YP D+P+V                           ++T E N+ V HP++
Sbjct: 73  FQLLFKFSSRYPFDSPQV---------------------------MFTGE-NIPV-HPHV 103
Query: 137 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
              G++CL++L EDW P L++ ++   +  + +
Sbjct: 104 YSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 45/128 (35%)
Query: 55  QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLL 113
           + DL N+EV+I  P   YY+ G F    + P  YP+  P  +  TK              
Sbjct: 34  EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK-------------- 79
Query: 114 FNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-------------REDWKPVLNINTI 160
                            ++HPNI   G+VC+++L              E W P  N+ TI
Sbjct: 80  -----------------MWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 122
Query: 161 IYGLYHLF 168
           +  +  L 
Sbjct: 123 LLSVISLL 130

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 45/128 (35%)
Query: 55  QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLL 113
           + DL N+EV+I  P   YY+ G F    + P  YP+  P  +  TK              
Sbjct: 31  EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK-------------- 76
Query: 114 FNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-------------REDWKPVLNINTI 160
                            ++HPNI   G+VC+++L              E W P  N+ TI
Sbjct: 77  -----------------MWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 119
Query: 161 IYGLYHLF 168
           +  +  L 
Sbjct: 120 LLSVISLL 127

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 33/103 (32%)
Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
           +  E++  PD  Y + G +    ++P  YP + PKV+  TK+                  
Sbjct: 56  LRGEIAGPPDTPY-EGGRYQLEIKIPETYPFNPPKVRFITKI------------------ 96
Query: 119 KLELYTFESNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
                        +HPNI  + G +CL++L++ W   + + T+
Sbjct: 97  -------------WHPNISSVTGAICLDILKDQWAAAMTLRTV 126

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 32/95 (33%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           P +  Y+ G +    ++P  YP + PKV+  TK+                          
Sbjct: 99  PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI-------------------------- 132
Query: 127 SNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
                +HPNI  + G +CL++L++ W   + + T+
Sbjct: 133 -----WHPNISSVTGAICLDILKDQWAAAMTLRTV 162

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 32/95 (33%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           P +  Y+ G +    ++P  YP + PKV+  TK+                          
Sbjct: 48  PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI-------------------------- 81
Query: 127 SNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
                +HPNI  + G +CL++L++ W   + + T+
Sbjct: 82  -----WHPNISSVTGAICLDILKDQWAAAMTLRTV 111

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 32/95 (33%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
           P +  Y+ G +    ++P  YP + PKV+  TK+                          
Sbjct: 47  PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI-------------------------- 80
Query: 127 SNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
                +HPNI  + G +CL++L++ W   + + T+
Sbjct: 81  -----WHPNISSVTGAICLDILKDQWAAAMTLRTV 110

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 33/103 (32%)
Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
           +  E++  PD  Y + G +    ++P  YP + PKV+  TK+                  
Sbjct: 43  LRGEIAGPPDTPY-EGGRYQLEIKIPETYPFNPPKVRFITKI------------------ 83
Query: 119 KLELYTFESNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
                        +HPNI  + G +CL++L++ W   + + T+
Sbjct: 84  -------------WHPNISSVTGAICLDILKDQWAAAMTLRTV 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	3e-54
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	2e-50
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	1e-48
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	2e-39
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	4e-33
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	5e-29
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	1e-24
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	2e-23
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	2e-23
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	7e-23
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	8e-23
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-22
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	3e-22
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	6e-22
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	8e-22
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	8e-22
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	8e-22
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	9e-22
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	9e-22
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	1e-21
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	1e-21
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	2e-21
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	3e-21
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	4e-21
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	4e-21
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	1e-20
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	2e-20
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	3e-20
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	4e-20
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	4e-20
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	5e-20
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	1e-19
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	3e-19
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	3e-19
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	4e-18
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	2e-17
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	2e-17
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	3e-17
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	8e-17
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	9e-17
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	4e-16
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	4e-16
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	5e-16
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	5e-16
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	1e-15
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-14
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	2e-14
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	5e-12
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	3e-11
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	1e-10
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  169 bits (430), Expect = 3e-54
 Identities = 84/169 (49%), Positives = 108/169 (63%), Gaps = 37/169 (21%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LF +K+++KE+ + ++     KK  A +LR+ KDI ELNLP+ C ISF +  DDL+N
Sbjct: 3   MIKLFSLKQQKKEEEKGSS-----KKASAAQLRIQKDINELNLPKTCDISFSDP-DDLLN 56

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
           F++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T                      
Sbjct: 57  FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM--------------------- 95

Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                     VYHPNIDLEGNV LN+LREDWKPVL IN+IIYGL +LF 
Sbjct: 96  ----------VYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFL 134

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  159 bits (405), Expect = 2e-50
 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 38/174 (21%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLM- 59
           M++L ++++K+++  EN    +      A  +RL +D+  L+LP    ++     D    
Sbjct: 3   MLKLRQLQKKKQK--ENENSSSIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADR 60

Query: 60  ----NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFN 115
                 EV ++PDEGYY  G+  F+ +   +YP + PKV C  K                
Sbjct: 61  SQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK---------------- 104

Query: 116 HAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                          ++HPNIDL+GNVCLN+LREDW P L++ +II GL  LF 
Sbjct: 105 ---------------IFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFL 143

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  154 bits (391), Expect = 1e-48
 Identities = 76/145 (52%), Positives = 91/145 (62%), Gaps = 32/145 (22%)

Query: 25  KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVP 84
               A +LR+ KDI ELNLP+ C ISF +  DDL+NF++ I PDEG+Y++G FVFSF+V 
Sbjct: 2   SMASAAQLRIQKDINELNLPKTCDISFSDP-DDLLNFKLVICPDEGFYKSGKFVFSFKVG 60

Query: 85  PIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCL 144
             YPHD PKVKC+T                                VYHPNIDLEGNVCL
Sbjct: 61  QGYPHDPPKVKCETM-------------------------------VYHPNIDLEGNVCL 89

Query: 145 NVLREDWKPVLNINTIIYGLYHLFT 169
           N+LREDWKPVL IN+IIYGL +LF 
Sbjct: 90  NILREDWKPVLTINSIIYGLQYLFL 114

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  130 bits (330), Expect = 2e-39
 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 40/161 (24%)

Query: 17  NNTGGTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQN 74
           + T     ++    +  L K++ EL  NLP  CK+ FP+  + L  F++++ PDEGYYQ 
Sbjct: 2   SATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDP-NKLHCFQLTVTPDEGYYQG 60

Query: 75  GTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHP 134
           G F F  EVP  Y    PKVKC TK                               ++HP
Sbjct: 61  GKFQFETEVPDAYNMVPPKVKCLTK-------------------------------IWHP 89

Query: 135 NIDLEGNVCLNVLR------EDWKPVLNINTIIYGLYHLFT 169
           NI   G +CL++LR        W P   +  +++GL  LFT
Sbjct: 90  NITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 130

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  114 bits (288), Expect = 4e-33
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 35/151 (23%)

Query: 26  KQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYY--QNGTFVFSFE 82
           K    E+  + +      P +  I   +  D + N+ + +K P +  Y     T+  S  
Sbjct: 18  KLLLEEVDANNEANSSGSPHSTAIFSVDT-DTIYNWILKVKAPADSVYGGAGNTYQLSVL 76

Query: 83  VPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNV 142
               YPH+ P V+  T                                VY P +  EG +
Sbjct: 77  FSDDYPHEPPTVRFVTP-------------------------------VYSPLVTGEGGI 105

Query: 143 CLNVLREDWKPVLNINTIIYGLYHLFTVMLD 173
           C  ++ + W P  + + +I  +         
Sbjct: 106 CDRMVNDFWTPDQHASDVIKLVLDRVFSQYK 136

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  103 bits (260), Expect = 5e-29
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 35/141 (24%)

Query: 32  LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPH 89
           +R+ K++ +L    P   +    +   +++ +   + PD+  Y    F      PP YP 
Sbjct: 7   MRVVKELEDLQKKPPPYLRN-LSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPF 65

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR- 148
             P +K  TK                               +YHPN+D  G +CL ++  
Sbjct: 66  KPPMIKFTTK-------------------------------IYHPNVDENGQICLPIISS 94

Query: 149 EDWKPVLNINTIIYGLYHLFT 169
           E+WKP      ++  L  L  
Sbjct: 95  ENWKPCTKTCQVLEALNVLVN 115

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 92.4 bits (230), Expect = 1e-24
 Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 32/150 (21%)

Query: 14  DAENNTGGTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEG 70
              +++G  P     + + RL K++  L  + P    ++  + Q+ +  + V ++     
Sbjct: 7   HHHHSSGLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGT 66

Query: 71  YYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQ 130
            Y+   F   F+    YP D+P+V                              F     
Sbjct: 67  LYEGEKFQLLFKFSSRYPFDSPQVM-----------------------------FTGENI 97

Query: 131 VYHPNIDLEGNVCLNVLREDWKPVLNINTI 160
             HP++   G++CL++L EDW P L++ ++
Sbjct: 98  PVHPHVYSNGHICLSILTEDWSPALSVQSV 127

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 90.0 bits (224), Expect = 2e-23
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 36/131 (27%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
            ++K++T L  + P+  K+ FPN  +DL + +V+I+ P+   Y  G F     +   +P 
Sbjct: 17  LVYKEVTTLTADPPDGIKV-FPNE-EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PK    TK+                               +HPN+   G +C+NVL+ 
Sbjct: 75  SPPKGYFLTKI-------------------------------FHPNVGANGEICVNVLKR 103

Query: 150 DWKPVLNINTI 160
           DW   L I  +
Sbjct: 104 DWTAELGIRHV 114

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 90.0 bits (224), Expect = 2e-23
 Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 35/136 (25%)

Query: 29  AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPI 86
           A   RL K++ E+     +  +      + +L+ ++  I PD   Y  G F      P  
Sbjct: 2   AASRRLMKELEEIRKCGMKNFRNI-QVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNV 146
           YP   PK+  KTK                               +YHPNID +G VCL V
Sbjct: 61  YPFKPPKITFKTK-------------------------------IYHPNIDEKGQVCLPV 89

Query: 147 LRED-WKPVLNINTII 161
           +  + WKP    + +I
Sbjct: 90  ISAENWKPATKTDQVI 105

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 88.5 bits (220), Expect = 7e-23
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 36/131 (27%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+  +L  +         P+  D+L  F+V+I+ P++  Y++G F     +P  YP 
Sbjct: 9   RIIKETEKLVSDPVPGITA-EPHD-DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 66

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
           +APKV+  TK                               +YHPNID  G +CL+VL+ 
Sbjct: 67  EAPKVRFLTK-------------------------------IYHPNIDRLGRICLDVLKT 95

Query: 150 DWKPVLNINTI 160
           +W P L I T+
Sbjct: 96  NWSPALQIRTV 106

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 88.1 bits (219), Expect = 8e-23
 Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 36/131 (27%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+   L    P       P   ++  +F + I  PD   Y+ GT+     +P  YP 
Sbjct: 5   RITKETQNLANEPPPGIMA-VPVP-ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPM 62

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
           + PKV+  TK                               +YHPNID  G +CL++L++
Sbjct: 63  EPPKVRFLTK-------------------------------IYHPNIDKLGRICLDILKD 91

Query: 150 DWKPVLNINTI 160
            W P L I T+
Sbjct: 92  KWSPALQIRTV 102

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 87.3 bits (217), Expect = 2e-22
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 36/131 (27%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+   L        K   P+   +   F V I  P +  ++ GTF     +P  YP 
Sbjct: 9   RIIKETQRLLAEPVPGIKA-EPDE-SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 66

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
            APKV+  TK                               +YHPN+D  G +CL++L++
Sbjct: 67  AAPKVRFMTK-------------------------------IYHPNVDKLGRICLDILKD 95

Query: 150 DWKPVLNINTI 160
            W P L I T+
Sbjct: 96  KWSPALQIRTV 106

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 87.5 bits (217), Expect = 3e-22
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 42/158 (26%)

Query: 6   KVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNL--PEACKISFPNGQDDLMNFEV 63
           K KE +   ++N+   +   K      R+ K++ ++ L  P  C    P G D++  +  
Sbjct: 31  KKKESKVSMSKNSKLLSTSAK------RIQKELADITLDPPPNCSA-GPKG-DNIYEWRS 82

Query: 64  SIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLEL 122
           +I  P    Y+ G F       P YP   PKV  +T+                       
Sbjct: 83  TILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR----------------------- 119

Query: 123 YTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTI 160
                   +YH NI+ +G +CL++L+++W P L I+ +
Sbjct: 120 --------IYHCNINSQGVICLDILKDNWSPALTISKV 149

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 86.2 bits (214), Expect = 6e-22
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 36/152 (23%)

Query: 12  KEDAENNTGGTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PD 68
           K    ++     V +      R+HK++ +L  + P  C    P G DD+ +++ +I  P+
Sbjct: 2   KHHHHHHPMSGLVPRGSMALKRIHKELNDLARDPPAQCSA-GPVG-DDMFHWQATIMGPN 59

Query: 69  EGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESN 128
           +  YQ G F  +   P  YP   PKV   T+                             
Sbjct: 60  DSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR----------------------------- 90

Query: 129 LQVYHPNIDLEGNVCLNVLREDWKPVLNINTI 160
             +YHPNI+  G++CL++LR  W P L I+ +
Sbjct: 91  --IYHPNINSNGSICLDILRSQWSPALTISKV 120

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 85.4 bits (212), Expect = 8e-22
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 36/131 (27%)

Query: 33  RLHKDITELNL--PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL +++  L +         FP+G D+L  +  ++  P +  Y++  +  + E P  YP+
Sbjct: 13  RLQQELRTLLMSGDPGITA-FPDG-DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             P VK  T                                 +HPN+D  GN+CL++L+E
Sbjct: 71  KPPVVKFTTPC-------------------------------WHPNVDQSGNICLDILKE 99

Query: 150 DWKPVLNINTI 160
           +W    ++ TI
Sbjct: 100 NWTASYDVRTI 110

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 85.8 bits (213), Expect = 8e-22
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 36/131 (27%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R++K++ +L  + P  C    P G DD+ +++ +I  P++  Y  G F  +   P  YP 
Sbjct: 25  RINKELNDLSKDPPTNCSA-GPVG-DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PKV   TK                               +YHPNI+ +G +CL++L++
Sbjct: 83  KPPKVNFTTK-------------------------------IYHPNINSQGAICLDILKD 111

Query: 150 DWKPVLNINTI 160
            W P L I+ +
Sbjct: 112 QWSPALTISKV 122

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 84.6 bits (210), Expect = 8e-22
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 35/131 (26%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++     N P  C +   +  +++  + V     +   Y N  +      P  YP 
Sbjct: 10  RIQKELHNFLNNPPINCTL-DVHP-NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPL 67

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             P V    K                                 H ++   G++CL++L +
Sbjct: 68  KPPIVYFLQKP------------------------------PKHTHVYSNGDICLSLLGD 97

Query: 150 DWKPVLNINTI 160
           D+ P L+I+ +
Sbjct: 98  DYNPSLSISGL 108

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 85.4 bits (212), Expect = 9e-22
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 36/131 (27%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++ +L  + P  C    P G DDL +++ +I  P E  YQ G F  +   P  YP 
Sbjct: 8   RIQKELQDLGRDPPAQCSA-GPVG-DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PKV   T+                               +YHPNI+  G++CL++LR 
Sbjct: 66  KPPKVAFTTR-------------------------------IYHPNINSNGSICLDILRS 94

Query: 150 DWKPVLNINTI 160
            W P L I+ +
Sbjct: 95  QWSPALTISKV 105

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 84.7 bits (210), Expect = 9e-22
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 35/131 (26%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++     N P  C I   +   ++  + V     +   Y N  +      P  YP 
Sbjct: 24  RIQKELNNFLKNPPINCTI-DVHP-SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPL 81

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             P V    K                                 H ++   G++CL+VL +
Sbjct: 82  KPPIVYFLQKP------------------------------PKHTHVYSNGDICLSVLGD 111

Query: 150 DWKPVLNINTI 160
           D+ P L+I+ +
Sbjct: 112 DYNPSLSISGL 122

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 85.9 bits (213), Expect = 1e-21
 Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 38/151 (25%)

Query: 15  AENNTGGTPVKKQCAGEL--RLHKDITELNL--PEACKISFPNGQDDLMNFEVSIK-PDE 69
           A    G  P      G +  RL +++  L +   +     FP   D+L  +  +I     
Sbjct: 14  AAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISA-FPES-DNLFKWVGTIHGAAG 71

Query: 70  GYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNL 129
             Y++  +  S E P  YP++AP VK  T                               
Sbjct: 72  TVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC----------------------------- 102

Query: 130 QVYHPNIDLEGNVCLNVLREDWKPVLNINTI 160
             YHPN+D +GN+ L++L+E W  + ++ TI
Sbjct: 103 --YHPNVDTQGNISLDILKEKWSALYDVRTI 131

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 85.0 bits (211), Expect = 1e-21
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 40/135 (29%)

Query: 33  RLHKDITELNL-----PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           R+ ++  E+           K+      ++       I  P +  Y+ G +    ++P  
Sbjct: 12  RIKREFKEVLKSEETSKNQIKV-DLVD-ENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 69

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLN 145
           YP + PKV+  TK                               ++HPNI  + G +CL+
Sbjct: 70  YPFNPPKVRFITK-------------------------------IWHPNISSVTGAICLD 98

Query: 146 VLREDWKPVLNINTI 160
           +L++ W   + + T+
Sbjct: 99  ILKDQWAAAMTLRTV 113

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 84.2 bits (209), Expect = 2e-21
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 36/132 (27%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+I  +  +      +     + D+ + + +   P    Y+ G FV   EVP  YP 
Sbjct: 5   RIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR 148
             PK++  TK                               VYHPNI  + G +CL++L+
Sbjct: 64  KPPKMQFDTK-------------------------------VYHPNISSVTGAICLDILK 92

Query: 149 EDWKPVLNINTI 160
             W PV+ + + 
Sbjct: 93  NAWSPVITLKSA 104

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 85.6 bits (212), Expect = 3e-21
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 36/133 (27%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+I  +  +      +     + D+ + + +   P    Y+ G FV   EVP  YP 
Sbjct: 6   RIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR 148
             PK++  TK                               VYHPNI  + G +CL++LR
Sbjct: 65  KPPKMQFDTK-------------------------------VYHPNISSVTGAICLDILR 93

Query: 149 EDWKPVLNINTII 161
             W PV+ + + +
Sbjct: 94  NAWSPVITLKSAL 106

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 85.2 bits (211), Expect = 4e-21
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 37/132 (28%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL K++ ++     +           +   +   IK P+   Y+ G F  +  +P  YP+
Sbjct: 27  RLQKELKDIENENVQEIDA-HIKD-SNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPY 84

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-GNVCLNVLR 148
           + PK+K  TK                               ++HPNI  + G +CL+VL+
Sbjct: 85  NPPKIKFVTK-------------------------------IWHPNISSQTGAICLDVLK 113

Query: 149 EDWKPVLNINTI 160
            +W P L I T 
Sbjct: 114 NEWSPALTIRTA 125

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 83.8 bits (208), Expect = 4e-21
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 37/132 (28%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
            L +   +    +     +   N      +F+V    P+   Y+ G +     +P  YP 
Sbjct: 3   SLTRKQCDFTKLIMAGYDLE-LNN-GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPF 60

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR 148
            +P +    K+                                HPN+D   G+VCL+V+ 
Sbjct: 61  ASPSIGFMNKL-------------------------------LHPNVDEASGSVCLDVIN 89

Query: 149 EDWKPVLNINTI 160
           + W P+ ++  +
Sbjct: 90  QTWTPLYSLVNV 101

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 83.6 bits (207), Expect = 1e-20
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 40/135 (29%)

Query: 33  RLHKDITEL-----NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           R+ ++  E+           K+      ++       I  P +  Y+ G +    ++P  
Sbjct: 9   RIKREFKEVLKSEETSKNQIKV-DLVD-ENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 66

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLN 145
           YP + PKV+  TK                               ++HPNI  + G +CL+
Sbjct: 67  YPFNPPKVRFITK-------------------------------IWHPNISSVTGAICLD 95

Query: 146 VLREDWKPVLNINTI 160
           +L++ W   + + T+
Sbjct: 96  ILKDQWAAAMTLRTV 110

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 84.6 bits (209), Expect = 2e-20
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 40/135 (29%)

Query: 33  RLHKDITEL-----NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           R+ ++  E+           K+      ++       I  P +  Y+ G +    ++P  
Sbjct: 61  RIKREFKEVLKSEETSKNQIKV-DLVD-ENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 118

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLN 145
           YP + PKV+  TK                               ++HPNI  + G +CL+
Sbjct: 119 YPFNPPKVRFITK-------------------------------IWHPNISSVTGAICLD 147

Query: 146 VLREDWKPVLNINTI 160
           +L++ W   + + T+
Sbjct: 148 ILKDQWAAAMTLRTV 162

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 82.0 bits (203), Expect = 3e-20
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 40/136 (29%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL +++  L    P      + +  D + +    I       Y+ G F     +P  YP 
Sbjct: 8   RLKRELHMLATEPPPGITC-WQDK-DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-- 147
           + P+++  T                                +YHPNID  G +CL+VL  
Sbjct: 66  EPPQIRFLTP-------------------------------IYHPNIDSAGRICLDVLKL 94

Query: 148 --REDWKPVLNINTII 161
             +  W+P LNI T++
Sbjct: 95  PPKGAWRPSLNIATVL 110

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 81.7 bits (202), Expect = 4e-20
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 37/130 (28%)

Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R   D   L      K+ +P+  D +  F V  K P+   Y++GT++   ++P  YP  +
Sbjct: 16  RREMDYMRL-CNSTRKV-YPS--DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS 71

Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-GNVCLNVLRED 150
           P +    +                               + HPN+D   G+VCL+V+ + 
Sbjct: 72  PSIGFCNR-------------------------------ILHPNVDERSGSVCLDVINQT 100

Query: 151 WKPVLNINTI 160
           W P+  +  I
Sbjct: 101 WTPMYQLENI 110

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 81.7 bits (202), Expect = 4e-20
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 41/132 (31%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+  D+ +L  +  E   +        L  F V    P    Y+ G +    ++P  YP 
Sbjct: 29  RMDTDVIKLIESKHEVTIL------GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPF 82

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR 148
            +P +    K+                               +HPNID   G VCL+V+ 
Sbjct: 83  KSPSIGFMNKI-------------------------------FHPNIDEASGTVCLDVIN 111

Query: 149 EDWKPVLNINTI 160
           + W  + ++  I
Sbjct: 112 QTWTALYDLTNI 123

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 80.8 bits (200), Expect = 5e-20
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 36/140 (25%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL +D   L  + P       P   +++M +   I  PD+  +  GTF  S +    YP+
Sbjct: 8   RLMRDFKRLQQDPPAGISG-APQD-NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN 65

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             P V+  +++                               +HPNI  +G++CL++L+ 
Sbjct: 66  KPPTVRFVSRM-------------------------------FHPNIYADGSICLDILQN 94

Query: 150 DWKPVLNINTIIYGLYHLFT 169
            W P+ ++  I+  +  L  
Sbjct: 95  QWSPIYDVAAILTSIQSLLC 114

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 83.8 bits (207), Expect = 1e-19
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 36/140 (25%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+HK++ +L  + P  C    P G DD+ +++ +I  P++  YQ G F  +   P  YP 
Sbjct: 7   RIHKELNDLARDPPAQCSA-GPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PKV   T++                               YHPNI+  G++ L++LR 
Sbjct: 65  KPPKVAFTTRI-------------------------------YHPNINSNGSISLDILRS 93

Query: 150 DWKPVLNINTIIYGLYHLFT 169
            W P L I+ ++  +  L  
Sbjct: 94  QWSPALTISKVLLSICSLLC 113

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 79.3 bits (196), Expect = 3e-19
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 36/131 (27%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL +D   +  + P       P   D++M +   I  P +  Y++GTF    E    YP+
Sbjct: 8   RLMRDFKRMKEDAPPGVSA-SPLP-DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPN 65

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             P VK  +++                               +HPN+   G +CL++L+ 
Sbjct: 66  KPPHVKFLSEM-------------------------------FHPNVYANGEICLDILQN 94

Query: 150 DWKPVLNINTI 160
            W P  ++ +I
Sbjct: 95  RWTPTYDVASI 105

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 79.8 bits (197), Expect = 3e-19
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 50/145 (34%)

Query: 33  RLHKDITEL---------------NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGT 76
           RL K++ ++               +           G  D+  +   I  P    Y+ G 
Sbjct: 36  RLLKELADIQQLQRAHDSEPAATHSTSHGVSA-QIVG-GDIHRWRGFIAGPLGTPYEGGH 93

Query: 77  FVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNI 136
           F     +PP YP++ PK+K  TK                               ++HPNI
Sbjct: 94  FTLDIVIPPDYPYNPPKMKFVTK-------------------------------IWHPNI 122

Query: 137 DLE-GNVCLNVLREDWKPVLNINTI 160
             + G +CL++L+ +W P L I T 
Sbjct: 123 SSQTGAICLDILKHEWSPALTIRTA 147

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 76.3 bits (188), Expect = 4e-18
 Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 47/144 (32%)

Query: 33  RLHKDITEL-----------NLPEACKIS-FPNGQDDLMNFEVSIK-PDEGYYQNGTFVF 79
           R+ K+   +           N       S  P  + DL  +E  I  P +  Y+N  F  
Sbjct: 10  RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69

Query: 80  SFEVPPIYPHDAPKVK-CKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL 138
             EVP  YP + PK+   +                                 + H N+  
Sbjct: 70  LIEVPSSYPMNPPKISFMQNN-------------------------------ILHCNVKS 98

Query: 139 E-GNVCLNVLRED-WKPVLNINTI 160
             G +CLN+L+ + W PV ++   
Sbjct: 99  ATGEICLNILKPEEWTPVWDLLHC 122

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 74.2 bits (183), Expect = 2e-17
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 39/145 (26%)

Query: 33  RLHKDITEL--NLPEACK---ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           RL ++  +   + P       +   +G  DL  +E  I   +   +  G +  + E P  
Sbjct: 8   RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNV 146
           YP   PKVK                                    YHPN+   G +CL++
Sbjct: 68  YPSKPPKVKFPAGF-------------------------------YHPNVYPSGTICLSI 96

Query: 147 LRE--DWKPVLNINTIIYGLYHLFT 169
           L E  DW+P + +  I+ G+  L  
Sbjct: 97  LNEDQDWRPAITLKQIVLGVQDLLD 121

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 73.9 bits (182), Expect = 2e-17
 Identities = 33/145 (22%), Positives = 52/145 (35%), Gaps = 39/145 (26%)

Query: 33  RLHKDITEL--NLPEACK---ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           RL ++      + P          P+G  +LMN+E +I       ++ G F         
Sbjct: 11  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNV 146
           YP   PK K +  +                               +HPN+   G VCL++
Sbjct: 71  YPSSPPKCKFEPPL-------------------------------FHPNVYPSGTVCLSI 99

Query: 147 LRE--DWKPVLNINTIIYGLYHLFT 169
           L E  DW+P + I  I+ G+  L  
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLN 124

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 73.9 bits (182), Expect = 3e-17
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 39/145 (26%)

Query: 33  RLHKDITEL--NLPEACK---ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           RL ++  +   + P           +G  DLMN++V I    +  ++ G +  +   P  
Sbjct: 14  RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNV 146
           YP   PK +    +                               +HPN+   G VCL++
Sbjct: 74  YPTRPPKCRFTPPL-------------------------------FHPNVYPSGTVCLSI 102

Query: 147 LRED--WKPVLNINTIIYGLYHLFT 169
           L E+  WKP + I  I+ G+  L  
Sbjct: 103 LNEEEGWKPAITIKQILLGIQDLLD 127

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 72.8 bits (179), Expect = 8e-17
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 48/149 (32%)

Query: 29  AGELRLHKDITELNL--PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPP 85
            G L L + + ELN    E          +DL  +EV I  P +  Y+ G F      P 
Sbjct: 17  RGSLLLRRQLAELNKNPVEGFSA-GLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPK 75

Query: 86  IYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLN 145
            YP   PK+K  T+                               ++HPN+D  G+VC++
Sbjct: 76  DYPLRPPKMKFITE-------------------------------IWHPNVDKNGDVCIS 104

Query: 146 VL-------------REDWKPVLNINTII 161
           +L              E W P+  + TI+
Sbjct: 105 ILHEPGEDKYGYEKPEERWLPIHTVETIM 133

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 72.7 bits (179), Expect = 9e-17
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 39/134 (29%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
            LH+D  +L  N  +      P   +D+M +EV I+      +Q   F  +      Y +
Sbjct: 27  LLHRDFCDLKENNYKGITA-KPVS-EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNY 84

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-GNVCLNVLR 148
             P VK  T                                 +HPN+D   G  C++ L 
Sbjct: 85  APPVVKFITI-------------------------------PFHPNVDPHTGQPCIDFLD 113

Query: 149 --EDWKPVLNINTI 160
             E W     +++I
Sbjct: 114 NPEKWNTNYTLSSI 127

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 70.9 bits (174), Expect = 4e-16
 Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 41/137 (29%)

Query: 33  RLHKDITELNL-PEACKISFPNGQDD---LMNFEVSIK-PDEGYYQNGTFVFSFEVPPIY 87
           RL +++ E         +S+    D+   L  +   I  P    Y+N  +    E  P Y
Sbjct: 39  RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98

Query: 88  PHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNV----C 143
           P   P V+  TK                               +    ++    V     
Sbjct: 99  PEAPPFVRFVTK-------------------------------INMNGVNSSNGVVDPRA 127

Query: 144 LNVLREDWKPVLNINTI 160
           ++VL   W+   +I  +
Sbjct: 128 ISVLA-KWQNSYSIKVV 143

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 70.8 bits (174), Expect = 4e-16
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 48/153 (31%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL  +  +L  N PE      P  +++   +E  I  P++  ++ G F      P  YP 
Sbjct: 7   RLMAEYKQLTLNPPEGIVA-GPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR- 148
             PK++   +                               ++HPNI  +G VC+++L  
Sbjct: 66  SPPKMRFTCE-------------------------------MFHPNIYPDGRVCISILHA 94

Query: 149 ------------EDWKPVLNINTIIYGLYHLFT 169
                       E W PV ++  I+  +  +  
Sbjct: 95  PGDDPMGYESSAERWSPVQSVEKILLSVVSMLA 127

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 71.3 bits (175), Expect = 5e-16
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 48/145 (33%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
            L  ++  L     E  ++     + DL N+EV+I  P   YY+ G F    + P  YP+
Sbjct: 11  ALLLELKGLQEEPVEGFRV-TLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR- 148
             P  +  TK                               ++HPNI   G+VC+++L  
Sbjct: 70  SPPAFRFLTK-------------------------------MWHPNIYETGDVCISILHP 98

Query: 149 ------------EDWKPVLNINTII 161
                       E W P  N+ TI+
Sbjct: 99  PVDDPQSGELPSERWNPTQNVRTIL 123

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 70.5 bits (173), Expect = 5e-16
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 43/138 (31%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDD---LMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           RL +++ E    + +   +S+    D+   L  +   I  P    Y+N  +    E  P 
Sbjct: 29  RLLEELEEGQKGVGDGT-VSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 87

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNV---- 142
           YP   P V+  TK                               +    ++    V    
Sbjct: 88  YPEAPPFVRFVTK-------------------------------INMNGVNSSNGVVDPR 116

Query: 143 CLNVLREDWKPVLNINTI 160
            ++VL   W+   +I  +
Sbjct: 117 AISVLA-KWQNSYSIKVV 133

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 69.2 bits (170), Expect = 1e-15
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 38/144 (26%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDD--LMNFEVSIK-PDEGYYQNGTFVFSFEVPPIY 87
           RL +++ +                 DD  +  +  +I  P    ++N  +  S +  P Y
Sbjct: 10  RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69

Query: 88  PHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-GNVCLNV 146
           P   PKV   +K                               +  P ++   G V  + 
Sbjct: 70  PDSPPKVTFISK-------------------------------INLPCVNPTTGEVQTDF 98

Query: 147 LR-EDWKPVLNINTIIYGLYHLFT 169
               DWK    + T++  L     
Sbjct: 99  HTLRDWKRAYTMETLLLDLRKEMA 122

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 48/153 (31%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL K++ +L  + P       P  ++++  ++  I+ P +  Y +G F    E P  YP 
Sbjct: 8   RLLKELQQLIKDSPPGIVA-GPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR- 148
             PK+                                    + HPNI   G VC+++L  
Sbjct: 67  SPPKLTFTPS-------------------------------ILHPNIYPNGEVCISILHS 95

Query: 149 ------------EDWKPVLNINTIIYGLYHLFT 169
                       E W PV ++  I+  +  + +
Sbjct: 96  PGDDPNMYELAEERWSPVQSVEKILLSVMSMLS 128

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 26/136 (19%), Positives = 39/136 (28%), Gaps = 40/136 (29%)

Query: 33  RLHKDITEL---NLPEACKISFPNGQDD--LMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           RL  ++      N+ E          DD  L N+  +I       ++N  +  +      
Sbjct: 25  RLLDELERGQKGNVSEGV-SFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDN 83

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNV 146
           YP   P VK  TK+                                   +D  G V  N 
Sbjct: 84  YPDSPPTVKFDTKI-------------------------------EMSCVDNCGRVIKNN 112

Query: 147 L--REDWKPVLNINTI 160
           L   ++W     I TI
Sbjct: 113 LHILKNWNRNYTIETI 128

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 60.6 bits (147), Expect = 5e-12
 Identities = 16/141 (11%), Positives = 39/141 (27%), Gaps = 37/141 (26%)

Query: 33  RLHKDITELNL--PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL +D   +          + P    +++ +   ++ P+   Y+ G +      P  +P 
Sbjct: 18  RLKQDYLRIKKDPVPYI-CAEPLP-SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPF 75

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNV-CLNVLR 148
             P +          +                               +    +   +   
Sbjct: 76  KPPSIY--------MITPN-----------------------GRFKCNTRLCLSITDFHP 104

Query: 149 EDWKPVLNINTIIYGLYHLFT 169
           + W P  +++TI+ GL     
Sbjct: 105 DTWNPAWSVSTILTGLLSFMV 125

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 59.7 bits (144), Expect = 3e-11
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 38/133 (28%)

Query: 33  RLHKDITEL--NLPEACK--ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIY 87
           RL ++   L  +LP +    +     ++ L   +V I  P +  Y NG F F    P  Y
Sbjct: 80  RLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDY 139

Query: 88  PHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL 147
           P   P V  +T                 H+++             +PN+  +G VCL++L
Sbjct: 140 PSSPPLVNLETTGG--------------HSVRF------------NPNLYNDGKVCLSIL 173

Query: 148 R-------EDWKP 153
                   E W P
Sbjct: 174 NTWHGRPEEKWNP 186

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 49/160 (30%)

Query: 20  GGTPVKKQCAGELRLHKDITEL---NLPEACKISFPNGQDDLMNFEVSIK---PDEGYYQ 73
           G   V        RL K++ ++      +    S     D L ++ V ++   PD   + 
Sbjct: 18  GSGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHS 77

Query: 74  N----------GTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELY 123
           +             + +F     +P D P V+                            
Sbjct: 78  DLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP------------------------ 113

Query: 124 TFESNLQVYHPN-IDLEGNVCLNVLRED-WKPVLNINTII 161
                  V     +   G +C+ +L +  W    +I ++I
Sbjct: 114 -------VLSGGYVLGGGALCMELLTKQGWSSAYSIESVI 146

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 16/43 (37%)

Query: 119 KLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNIN-TI 160
           K  L   +++L++Y                 D  P L I  T+
Sbjct: 19  KQALKKLQASLKLYAD---------------DSAPALAIKATM 46

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 32/205 (15%), Positives = 54/205 (26%), Gaps = 73/205 (35%)

Query: 37  DITELNLP-EACKIS-------------FPN--------GQDDLMN-FEVSI---KPDE- 69
           D    +LP E    +                          D L    E S+   +P E 
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 70  -GYYQNGTFVFSFEVPPIYPHDAP---KVKC------KTKVDIFFLNFIHMLLLFN---- 115
              +       S     ++P  A     +             +  +N +H   L      
Sbjct: 372 RKMFDR----LS-----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 116 ------HAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE---DWKPVLNINTIIY---G 163
                  +I LEL     N    H +I ++     N+ +    D      ++   Y   G
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSI-VD---HYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 164 LYHLFTVMLDH------SIFFAFSF 182
            +HL  +           +F  F F
Sbjct: 479 -HHLKNIEHPERMTLFRMVFLDFRF 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.98
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.86
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.7
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.58
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.34
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	95.94
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	94.88
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	94.1
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	93.08
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	92.63
1tt5_E	26	Ubiquitin-conjugating enzyme E2 M; cell cycle, lig	92.28
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	91.9
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	89.14
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	86.48

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.4e-41  Score=272.59  Aligned_cols=142  Identities=59%  Similarity=1.028  Sum_probs=128.9

Q ss_pred             CcchhhhhhhhhhhhhhCCCCCCCccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEE
Q 030126            1 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFS   80 (182)
Q Consensus         1 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~   80 (182)
                      ||+++++++|+++++++     +..+.+.+.+||++|+++++.++|+++.+++ ++|++.|++.|||++|||+||.|++.
T Consensus         3 m~~~~~~~~~~~~~~~~-----~~~~~~~~~~RL~kEl~~l~~~~~i~~~~p~-~~nl~~W~~~igP~~tpYegg~f~~~   76 (180)
T 2nvu_C            3 MIKLFSLKQQKKEEEKG-----SSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFS   76 (180)
T ss_dssp             --CCCCCCCSCCCCCCS-----CCCSCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCCSGGGTTBCEEEE
T ss_pred             hHHHHHHHHHHHhhhhc-----ccCCccHHHHHHHHHHHhcCCCCCeEEEecc-cccccceEEEECCCCCCCCCCEEEEE
Confidence            89999998887554432     2566788999999999999989999987666 78999999999999999999999999


Q ss_pred             EEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHH
Q 030126           81 FEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTI  160 (182)
Q Consensus        81 i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~si  160 (182)
                      |.||++||++||+|+|.|+                               +|||||+.+|.||+++|.++|+|+++|++|
T Consensus        77 i~fp~~YP~~PP~v~F~t~-------------------------------i~HPNV~~~G~iCl~iL~~~W~p~~~i~~v  125 (180)
T 2nvu_C           77 FKVGQGYPHDPPKVKCETM-------------------------------VYHPNIDLEGNVALNILREDWKPVLTINSI  125 (180)
T ss_dssp             EECCTTTTTSCCEEEECSC-------------------------------CCBTTBCTTSBBCCGGGTTSCCTTCCHHHH
T ss_pred             EeCCCcCCCCCCcCceecc-------------------------------CccCCCCCCCcEEcccccccCCCCCCHHHH
Confidence            9999999999999999999                               999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCcccc
Q 030126          161 IYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       161 L~sI~~lL~~P~~~sp~~~  179 (182)
                      |.+|++||.+|+++||++.
T Consensus       126 L~si~~ll~~Pn~~~p~n~  144 (180)
T 2nvu_C          126 IYGLQYLFLEPNPEDPLNK  144 (180)
T ss_dssp             HHHHHHHHHSCCTTSCSSH
T ss_pred             HHHHHHHHhCCCCCCccCH
Confidence            9999999999999999875

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=5.9e-40  Score=269.30  Aligned_cols=145  Identities=39%  Similarity=0.796  Sum_probs=133.6

Q ss_pred             CcchhhhhhhhhhhhhhCCCCCCCccccHHHHHHHHHHHhcCCCCCceEEc---cCCCCCcc---eeEEeecCCCCccCC
Q 030126            1 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISF---PNGQDDLM---NFEVSIKPDEGYYQN   74 (182)
Q Consensus         1 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~kRL~kE~~~l~~~~g~~~~~---~~~~~n~~---~w~v~igp~~tpYeg   74 (182)
                      |++++++++|+++++++.+  ++..+.+.+.+||++|++++..++|+++.+   ++ ++|++   .|++.|+|++|||+|
T Consensus         3 m~~l~~~~~~~~~~~~~~~--~~~~~~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~-~~nl~~~~~w~~~I~p~~tpyeg   79 (190)
T 3o2u_A            3 MLKLRQLQKKKQKENENSS--SIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPD-SADRSQSPKLEVIVRPDEGYYNY   79 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--SSSCCCCHHHHHHHHHHHTCCCCTTEEEEEEECTT-CCCTTSCCEEEEEECCSSSTTTT
T ss_pred             hHHHHHHHHHHHHHHHhcC--CCCCCccHHHHHHHHHHHhccCCCCEEEEecCCCC-CccCCcCCeEEEEEcCCCCCCCC
Confidence            7888988888887766552  566778899999999999999888999974   66 78999   999999888899999


Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCcccc
Q 030126           75 GTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPV  154 (182)
Q Consensus        75 g~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~  154 (182)
                      |.|++.|.||++||++||+|+|.|+                               +|||||+.+|.||+++|.++|+|+
T Consensus        80 g~f~~~i~fp~~YP~~PP~v~f~t~-------------------------------i~HPnV~~~G~iCl~iL~~~W~p~  128 (190)
T 3o2u_A           80 GSINFNLDFNEVYPIEPPKVVCLKK-------------------------------IFHPNIDLKGNVCLNILREDWSPA  128 (190)
T ss_dssp             CCEEEEEECCTTTTTSCCEEEECSC-------------------------------CCCTTBCTTSBBCCGGGTTTCCTT
T ss_pred             CEEEEEEECCCCCCCCCceeEEecC-------------------------------cccCCCCCCCeEechhccCCCCCC
Confidence            9999999999999999999999999                               999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          155 LNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       155 ~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                      ++|++||.+|+++|.+|+++||+++
T Consensus       129 ~~i~~vL~~i~~ll~~pn~~~pln~  153 (190)
T 3o2u_A          129 LDLQSIITGLLFLFLEPNPNDPLNK  153 (190)
T ss_dssp             CCHHHHHHHHHHHHHSCCTTSCSSH
T ss_pred             CCHHHHHHHHHHHHhCCCCCcchhH
Confidence            9999999999999999999999985

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=4.5e-38  Score=253.13  Aligned_cols=127  Identities=29%  Similarity=0.666  Sum_probs=114.1

Q ss_pred             CCCCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEE
Q 030126           20 GGTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKC   96 (182)
Q Consensus        20 ~~~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f   96 (182)
                      ++........+.+||++|++++  +.++|+.+. ++ ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|
T Consensus        12 ~~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F   89 (166)
T 2ayv_A           12 SGRENLYFQGALKRINKELNDLSKDPPTNCSAG-PV-GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNF   89 (166)
T ss_dssp             -------CTTHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred             cccccccCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeee
Confidence            3445555667899999999999  778899886 44 58999999999 9999999999999999999999999999999


Q ss_pred             eeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCc
Q 030126           97 KTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSI  176 (182)
Q Consensus        97 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp  176 (182)
                      .|+                               +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||
T Consensus        90 ~T~-------------------------------i~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~P  138 (166)
T 2ayv_A           90 TTK-------------------------------IYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDP  138 (166)
T ss_dssp             CSC-------------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSC
T ss_pred             ccC-------------------------------CcCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCch
Confidence            999                               9999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 030126          177 FFA  179 (182)
Q Consensus       177 ~~~  179 (182)
                      +++
T Consensus       139 ln~  141 (166)
T 2ayv_A          139 LVP  141 (166)
T ss_dssp             SCH
T ss_pred             hhH
Confidence            975

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.3e-38  Score=249.88  Aligned_cols=122  Identities=62%  Similarity=1.089  Sum_probs=115.9

Q ss_pred             cccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           26 KQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      +.+.+.+||++|++++++++|+++.+++ ++|++.|++.|||++|||+||.|++.|.||++||++||+|+|.|+      
T Consensus         3 ~~~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~------   75 (160)
T 1y8x_A            3 MASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM------   75 (160)
T ss_dssp             SCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSC------
T ss_pred             cccHHHHHHHHHHHhcCCCCCeEEEecc-CCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecC------
Confidence            3467899999999999989999987666 789999999999999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        76 -------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~  124 (160)
T 1y8x_A           76 -------------------------VYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK  124 (160)
T ss_dssp             -------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCH
T ss_pred             -------------------------CccCcCCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCH
Confidence                                     9999999999999999999999999999999999999999999999975

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=1.1e-37  Score=248.85  Aligned_cols=120  Identities=27%  Similarity=0.540  Sum_probs=112.8

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      .++.+||++|++++  +.++|+++. +..++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-----   75 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAG-PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCE-----   75 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC-----
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCC-----
Confidence            46899999999999  678899986 55456999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcCC
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTVM  171 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~P  171 (182)
                                                +|||||+.+|.||+++|.             ++|+|++||++||.+|++||.+|
T Consensus        76 --------------------------i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~p  129 (164)
T 3h8k_A           76 --------------------------MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEP  129 (164)
T ss_dssp             --------------------------CCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSC
T ss_pred             --------------------------CccCCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCC
Confidence                                      999999999999999997             78999999999999999999999


Q ss_pred             CCCCcccc
Q 030126          172 LDHSIFFA  179 (182)
Q Consensus       172 ~~~sp~~~  179 (182)
                      +++||+++
T Consensus       130 n~~~p~n~  137 (164)
T 3h8k_A          130 NDESGANV  137 (164)
T ss_dssp             CCSSCSSH
T ss_pred             CCCCccCH
Confidence            99999975

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=9.9e-38  Score=246.73  Aligned_cols=120  Identities=32%  Similarity=0.674  Sum_probs=113.6

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      ...+.+||++|++++  +.+.|+++. +. ++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+    
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~----   75 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAG-PV-GDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTK----   75 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSC----
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecC----
Confidence            356889999999999  678899987 54 58999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                 +|||||+.+|.||+++|.++|+|+++|++||.+|+++|.+|+++||++.
T Consensus        76 ---------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  124 (151)
T 4gpr_A           76 ---------------------------VYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDP  124 (151)
T ss_dssp             ---------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSH
T ss_pred             ---------------------------cccceECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhH
Confidence                                       9999999999999999999999999999999999999999999999975

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.9e-38  Score=249.90  Aligned_cols=125  Identities=27%  Similarity=0.485  Sum_probs=116.0

Q ss_pred             CCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126           22 TPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (182)
Q Consensus        22 ~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t   98 (182)
                      +..+.+..+.+||++|++++  +.++|+.+. ++ ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|
T Consensus         6 ~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   83 (158)
T 1zdn_A            6 NVENLPPHIIRLVYKEVTTLTADPPDGIKVF-PN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT   83 (158)
T ss_dssp             --CCSCHHHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             cccccCHHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEecc
Confidence            34456678899999999999  678899986 54 68999999999 999999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCccc
Q 030126           99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFF  178 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~  178 (182)
                      +                               +|||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+++||++
T Consensus        84 ~-------------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n  132 (158)
T 1zdn_A           84 K-------------------------------IFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALN  132 (158)
T ss_dssp             C-------------------------------CCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSS
T ss_pred             C-------------------------------cccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCccc
Confidence            9                               999999999999999999999999999999999999999999999997


Q ss_pred             c
Q 030126          179 A  179 (182)
Q Consensus       179 ~  179 (182)
                      +
T Consensus       133 ~  133 (158)
T 1zdn_A          133 E  133 (158)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=1e-37  Score=247.82  Aligned_cols=122  Identities=28%  Similarity=0.559  Sum_probs=114.0

Q ss_pred             ccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccc
Q 030126           25 KKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVD  101 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~  101 (182)
                      .+...+.+||++|++++  +.++|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+  
T Consensus         5 ~~~~~~~~RL~kEl~~l~~~~~~~i~~~-p~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--   80 (156)
T 2e2c_A            5 KERHSVSKRLQQELRTLLMSGDPGITAF-PD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP--   80 (156)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC--
Confidence            34556889999999999  567899886 55 57999999999 9999999999999999999999999999999999  


Q ss_pred             hhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          102 IFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                   +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|++++|+++
T Consensus        81 -----------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~  129 (156)
T 2e2c_A           81 -----------------------------CWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNA  129 (156)
T ss_dssp             -----------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCH
T ss_pred             -----------------------------cccCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHH
Confidence                                         9999999999999999999999999999999999999999999999985

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=8.3e-38  Score=250.14  Aligned_cols=120  Identities=26%  Similarity=0.525  Sum_probs=112.6

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +.+.+||++|++++  ..++||++. +.+++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~-----   76 (165)
T 2ucz_A            3 KTAQKRLLKELQQLIKDSPPGIVAG-PKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS-----   76 (165)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEE-ESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-----
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC-----
Confidence            47889999999999  678899986 44357999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccC-------------CCCccccCcHHHHHHHHHHhhcCC
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-------------REDWKPVLNINTIIYGLYHLFTVM  171 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L-------------~e~W~p~~ti~siL~sI~~lL~~P  171 (182)
                                                +|||||+.+|.|||++|             .++|+|+++|++||.+|++||.+|
T Consensus        77 --------------------------i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~P  130 (165)
T 2ucz_A           77 --------------------------ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEP  130 (165)
T ss_dssp             --------------------------CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSC
T ss_pred             --------------------------CccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCC
Confidence                                      99999999999999999             688999999999999999999999


Q ss_pred             CCCCcccc
Q 030126          172 LDHSIFFA  179 (182)
Q Consensus       172 ~~~sp~~~  179 (182)
                      +++||+++
T Consensus       131 n~~~p~n~  138 (165)
T 2ucz_A          131 NIESGANI  138 (165)
T ss_dssp             CGGGCCCH
T ss_pred             CCCCchhH
Confidence            99999975

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.5e-38  Score=249.65  Aligned_cols=118  Identities=31%  Similarity=0.604  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      ++.+||++|++++  +.++|+++. +. ++|+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+      
T Consensus         5 ~~~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~------   76 (154)
T 2c2v_B            5 GLPRRIIKETQRLLAEPVPGIKAE-PD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK------   76 (154)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC------
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC------
Confidence            4569999999999  678899986 54 57999999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        77 -------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~  125 (154)
T 2c2v_B           77 -------------------------IYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN  125 (154)
T ss_dssp             -------------------------CCCTTBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--C
T ss_pred             -------------------------cccCcCccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence                                     9999999999999999999999999999999999999999999999975

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=1.3e-37  Score=245.62  Aligned_cols=119  Identities=32%  Similarity=0.711  Sum_probs=112.6

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      ..+.+||++|++++  +.++|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-----   75 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAG-PV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----   75 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-----
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecC-----
Confidence            45789999999999  678899886 44 58999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        76 --------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~  124 (150)
T 1z2u_A           76 --------------------------IYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP  124 (150)
T ss_dssp             --------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             --------------------------cccCcCCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCH
Confidence                                      9999999999999999999999999999999999999999999999875

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-37  Score=251.20  Aligned_cols=119  Identities=28%  Similarity=0.579  Sum_probs=112.9

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      ..+.+||++|++++  ..++|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~-----   75 (169)
T 1ayz_A            3 TPARRRLMRDFKRMKEDAPPGVSAS-PL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE-----   75 (169)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-----
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-ec-CCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC-----
Confidence            46889999999999  678899886 44 68999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|++++|+++
T Consensus        76 --------------------------i~HPNI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~  124 (169)
T 1ayz_A           76 --------------------------MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANV  124 (169)
T ss_dssp             --------------------------CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSH
T ss_pred             --------------------------CccCCCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHH
Confidence                                      9999999999999999999999999999999999999999999999975

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=2.5e-37  Score=248.35  Aligned_cols=121  Identities=31%  Similarity=0.725  Sum_probs=113.7

Q ss_pred             cccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           26 KQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      ..+.+.+||++|++++  +.++||++. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+   
T Consensus        16 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~---   90 (165)
T 2c4o_A           16 RGSMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR---   90 (165)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC---
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecC---
Confidence            3456889999999999  667899887 54 58999999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                  +|||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        91 ----------------------------i~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~  139 (165)
T 2c4o_A           91 ----------------------------IYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP  139 (165)
T ss_dssp             ----------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSH
T ss_pred             ----------------------------CcCCcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccH
Confidence                                        9999999999999999999999999999999999999999999999875

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=2e-37  Score=245.03  Aligned_cols=120  Identities=26%  Similarity=0.583  Sum_probs=113.0

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      +..+.+||++|++++  ..++|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+    
T Consensus         2 s~~a~~RL~~E~~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~----   75 (152)
T 2aak_A            2 STPARKRLMRDFKRLQQDPPAGISGA-PQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR----   75 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC----
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC----
Confidence            346889999999999  678899886 44 68999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                 +|||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+++||++.
T Consensus        76 ---------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  124 (152)
T 2aak_A           76 ---------------------------MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS  124 (152)
T ss_dssp             ---------------------------CCCTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSH
T ss_pred             ---------------------------cccCCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccH
Confidence                                       9999999999999999999999999999999999999999999999975

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=2e-37  Score=244.53  Aligned_cols=116  Identities=31%  Similarity=0.639  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhH
Q 030126           31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNF  107 (182)
Q Consensus        31 ~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~  107 (182)
                      .+||++|++++  +.++|+++. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+        
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--------   72 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAV-PV-PENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK--------   72 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC--------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccC--------
Confidence            48999999999  778899987 44 58999999999 9999999999999999999999999999999999        


Q ss_pred             HHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                             +|||||+.+|.||+++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        73 -----------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  121 (149)
T 2r0j_A           73 -----------------------IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDS  121 (149)
T ss_dssp             -----------------------CCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSC
T ss_pred             -----------------------CccCCCCCCCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhH
Confidence                                   9999999999999999999999999999999999999999999999985

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.9e-37  Score=247.74  Aligned_cols=120  Identities=28%  Similarity=0.571  Sum_probs=113.5

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      ++++.+||++|++++  +.++||.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+    
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~----   75 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCW-QD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP----   75 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC----
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecC----
Confidence            457889999999999  678899987 44 68999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC----CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR----EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~----e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                 +|||||+.+|.|||++|.    ++|+|+++|++||.+|++||.+|+++||+++
T Consensus        76 ---------------------------i~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~  128 (169)
T 1yh2_A           76 ---------------------------IYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMA  128 (169)
T ss_dssp             ---------------------------CCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ---------------------------CccccCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhH
Confidence                                       999999999999999998    8999999999999999999999999999975

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=1.2e-37  Score=245.46  Aligned_cols=118  Identities=29%  Similarity=0.553  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +.+||++|++++  +.++|+.+. +.+++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+       
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~-~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-------   73 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK-------   73 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEE-ESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSC-------
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEE-ECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC-------
Confidence            469999999999  667899987 44345999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+. +|.|||++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        74 ------------------------i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  123 (149)
T 1fxt_A           74 ------------------------VYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA  123 (149)
T ss_dssp             ------------------------CCBTTBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSH
T ss_pred             ------------------------CccCCCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence                                    99999999 99999999999999999999999999999999999999985

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=5.2e-37  Score=249.98  Aligned_cols=121  Identities=30%  Similarity=0.552  Sum_probs=113.2

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      .+++.+||++|++++  +.++|+++..++ ++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+    
T Consensus         5 ~~~a~kRL~kEl~~l~~~~~~gi~~~~~~-~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~----   79 (183)
T 3rz3_A            5 SPSSQKALLLELKGLQEEPVEGFRVTLVD-EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK----   79 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEECT-TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC----
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEecC-ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCC----
Confidence            357899999999999  678899987554 78999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcC
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTV  170 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~  170 (182)
                                                 +|||||+.+|.||+++|.             ++|+|+++|++||.+|++||.+
T Consensus        80 ---------------------------i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~  132 (183)
T 3rz3_A           80 ---------------------------MWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE  132 (183)
T ss_dssp             ---------------------------CCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHS
T ss_pred             ---------------------------CccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhC
Confidence                                       999999999999999996             8899999999999999999999


Q ss_pred             CCCCCcccc
Q 030126          171 MLDHSIFFA  179 (182)
Q Consensus       171 P~~~sp~~~  179 (182)
                      |+++||++.
T Consensus       133 Pn~~~p~n~  141 (183)
T 3rz3_A          133 PNTFSPANV  141 (183)
T ss_dssp             CCCSSCSSH
T ss_pred             CCCCCcccH
Confidence            999999974

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.3e-37  Score=239.03  Aligned_cols=119  Identities=22%  Similarity=0.444  Sum_probs=109.4

Q ss_pred             CCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126           22 TPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (182)
Q Consensus        22 ~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t   98 (182)
                      ....+...+.+||++|++++  +.+.|+.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        13 ~~~~~~~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t   90 (136)
T 2h2y_A           13 KTKYNLGNANYRIQKELNNFLKNPPINCTID-VH-PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQ   90 (136)
T ss_dssp             SSCCCTTSHHHHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS
T ss_pred             hhhccchHHHHHHHHHHHHHHhCCCCCeEEE-ec-cccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeC
Confidence            33445557889999999999  677899886 44 68999999999 999999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHhhhhhhhhhhhhccCcccc-ccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCC
Q 030126           99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV-YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLD  173 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~  173 (182)
                      +                               + |||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+.
T Consensus        91 ~-------------------------------i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           91 K-------------------------------PPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             S-------------------------------CCCCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             C-------------------------------CCCCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            9                               6 999999999999999999999999999999999999999985

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=4.5e-37  Score=248.38  Aligned_cols=123  Identities=30%  Similarity=0.542  Sum_probs=107.1

Q ss_pred             ccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccc
Q 030126           25 KKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVD  101 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~  101 (182)
                      ..+..+.+||++|+++|  +.++||++. +..++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+  
T Consensus        13 ~~~~~~~~rL~kEl~~l~~~~~~gi~~~-p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~--   89 (172)
T 2awf_A           13 GLVPRGSLLLRRQLAELNKNPVEGFSAG-LIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE--   89 (172)
T ss_dssp             CCCCTTHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCC--
Confidence            34567889999999999  778899987 44357999999999 9999999999999999999999999999999999  


Q ss_pred             hhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhh
Q 030126          102 IFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLF  168 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL  168 (182)
                                                   +|||||+.+|.||+++|.             ++|+|+++|++||.+|++||
T Consensus        90 -----------------------------i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll  140 (172)
T 2awf_A           90 -----------------------------IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML  140 (172)
T ss_dssp             -----------------------------CCCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred             -----------------------------CccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHH
Confidence                                         999999999999999996             68999999999999999999


Q ss_pred             cCCCCCCcccc
Q 030126          169 TVMLDHSIFFA  179 (182)
Q Consensus       169 ~~P~~~sp~~~  179 (182)
                      .+|+++||+++
T Consensus       141 ~~Pn~~~p~n~  151 (172)
T 2awf_A          141 ADPNGDSPANV  151 (172)
T ss_dssp             SCC--------
T ss_pred             HCcCCCCccCH
Confidence            99999999986

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.4e-37  Score=252.00  Aligned_cols=121  Identities=27%  Similarity=0.486  Sum_probs=112.1

Q ss_pred             cccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           26 KQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      +...+.+||++|++++  ..++||.+. ++ ++|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|+   
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~---  101 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAF-PE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP---  101 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEE-EE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC---
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecC---
Confidence            5677899999999999  567899886 54 57999999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                  +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus       102 ----------------------------i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~  150 (179)
T 1i7k_A          102 ----------------------------CYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNT  150 (179)
T ss_dssp             ----------------------------CCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ----------------------------CccCccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhH
Confidence                                        9999999999999999999999999999999999999999999999975

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=2.3e-37  Score=245.60  Aligned_cols=118  Identities=33%  Similarity=0.644  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      .+.+||++|++++  +.++||.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+      
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~-~~-~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~------   76 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAE-PH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK------   76 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC------
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecc------
Confidence            3569999999999  678899986 44 58999999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        77 -------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  125 (155)
T 1jat_A           77 -------------------------IYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAN  125 (155)
T ss_dssp             -------------------------CCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCC
T ss_pred             -------------------------cccCCCCCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccH
Confidence                                     9999999999999999999999999999999999999999999999986

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=4.3e-37  Score=236.51  Aligned_cols=115  Identities=20%  Similarity=0.466  Sum_probs=100.4

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +++.+||++|++++  +.++|+.+. ++ ++|+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+     
T Consensus         5 ~~a~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~-----   77 (125)
T 2fo3_A            5 GNANYRIQKELHNFLNNPPINCTLD-VH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK-----   77 (125)
T ss_dssp             ----CHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS-----
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-eC-cchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCC-----
Confidence            35779999999999  677899886 44 68999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCcccc-ccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCC
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQV-YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHS  175 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~s  175 (182)
                                                + +||||+.+|.||+++|.++|+|++||++||.+|++||.+|+.+.
T Consensus        78 --------------------------i~~HPnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           78 --------------------------PPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             --------------------------CCCBTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred             --------------------------CCCCCcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence                                      6 99999999999999999999999999999999999999998763

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=7.1e-37  Score=243.63  Aligned_cols=121  Identities=23%  Similarity=0.526  Sum_probs=112.2

Q ss_pred             cccHHHHHHHHHHHhcCC-----CCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           26 KQCAGELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l~~-----~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ++..+.+||++|++++..     +.|+.+. +. ++|+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   82 (159)
T 2bep_A            5 MANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   82 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence            345688999999999943     7788887 44 57999999999 9999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCccc
Q 030126          100 VDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFF  178 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~  178 (182)
                                                     +|||||+. +|.|||++|.++|+|+++|++||.+|++||.+|+++||++
T Consensus        83 -------------------------------i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n  131 (159)
T 2bep_A           83 -------------------------------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQD  131 (159)
T ss_dssp             -------------------------------CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSC
T ss_pred             -------------------------------CCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCccc
Confidence                                           99999996 9999999999999999999999999999999999999998


Q ss_pred             c
Q 030126          179 A  179 (182)
Q Consensus       179 ~  179 (182)
                      +
T Consensus       132 ~  132 (159)
T 2bep_A          132 A  132 (159)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=1.1e-36  Score=244.04  Aligned_cols=127  Identities=40%  Similarity=0.804  Sum_probs=116.4

Q ss_pred             CCCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126           21 GTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (182)
Q Consensus        21 ~~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t   98 (182)
                      .++...++.+.+||++|++++  +.++||++..++ ++|+..|++.|||++|||+||.|++.|.||++||++||+|+|.|
T Consensus         6 ~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~-~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   84 (167)
T 3fn1_B            6 SDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT   84 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSS-SSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS
T ss_pred             CCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCC-CCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecC
Confidence            345667889999999999999  568899997544 68999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCC------CccccCcHHHHHHHHHHhhcC-C
Q 030126           99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE------DWKPVLNINTIIYGLYHLFTV-M  171 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e------~W~p~~ti~siL~sI~~lL~~-P  171 (182)
                      +                               +|||||+.+|.||+++|..      +|+|+++|++||.+|++||.+ |
T Consensus        85 ~-------------------------------i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~p  133 (167)
T 3fn1_B           85 K-------------------------------IWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL  133 (167)
T ss_dssp             C-------------------------------CCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTC
T ss_pred             C-------------------------------cccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCC
Confidence            9                               9999999999999999975      799999999999999999999 7


Q ss_pred             CCCCcccc
Q 030126          172 LDHSIFFA  179 (182)
Q Consensus       172 ~~~sp~~~  179 (182)
                      +++||++.
T Consensus       134 n~~~p~n~  141 (167)
T 3fn1_B          134 NFDDPLNI  141 (167)
T ss_dssp             CSSSCSCH
T ss_pred             CCCcchhH
Confidence            99999975

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1e-36  Score=250.98  Aligned_cols=119  Identities=27%  Similarity=0.685  Sum_probs=113.0

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      ..+.+||++|+++|  +.++||.+. +. ++|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|+     
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~-----  119 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAG-PK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR-----  119 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-----
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceee-cc-cCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCC-----
Confidence            56889999999999  668899886 44 68999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|++.
T Consensus       120 --------------------------i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~  168 (194)
T 3bzh_A          120 --------------------------IYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG  168 (194)
T ss_dssp             --------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             --------------------------CccceECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhH
Confidence                                      9999999999999999999999999999999999999999999999984

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-36  Score=243.86  Aligned_cols=125  Identities=26%  Similarity=0.495  Sum_probs=111.9

Q ss_pred             CccccHHHHHHHHHHHhc--CCCCCceEEccCCCC---CcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030126           24 VKKQCAGELRLHKDITEL--NLPEACKISFPNGQD---DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~---n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~   97 (182)
                      +..+.+|.+||++|++++  +.++|+.+....++|   |+++|++.| ||++|||+||.|++.|.||++||++||+|+|.
T Consensus         5 ~~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~   84 (163)
T 3rcz_B            5 HHHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT   84 (163)
T ss_dssp             ----CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             cCCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEe
Confidence            456778999999999999  778999986322112   899999999 99999999999999999999999999999999


Q ss_pred             eccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCC--ccccCcHHHHHHHHHHhhcCCCCCC
Q 030126           98 TKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTVMLDHS  175 (182)
Q Consensus        98 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~--W~p~~ti~siL~sI~~lL~~P~~~s  175 (182)
                      |+                               +|||||+.+|.||+++|.+.  |+|++||++||.+|++||.+|++++
T Consensus        85 t~-------------------------------i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~  133 (163)
T 3rcz_B           85 PP-------------------------------LFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIAS  133 (163)
T ss_dssp             SC-------------------------------CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTS
T ss_pred             CC-------------------------------CccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCC
Confidence            99                               99999999999999999754  9999999999999999999999999


Q ss_pred             cccc
Q 030126          176 IFFA  179 (182)
Q Consensus       176 p~~~  179 (182)
                      |++.
T Consensus       134 p~n~  137 (163)
T 3rcz_B          134 PAQT  137 (163)
T ss_dssp             CSCH
T ss_pred             ccCH
Confidence            9875

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.4e-37  Score=246.82  Aligned_cols=123  Identities=24%  Similarity=0.398  Sum_probs=114.5

Q ss_pred             CccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           24 VKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      ..+...+.+||++|+++|  +.++|+.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+ 
T Consensus        18 ~~M~~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~-   94 (169)
T 1yrv_A           18 GSMHGRAYLLLHRDFCDLKENNYKGITAK-PV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI-   94 (169)
T ss_dssp             TGGGCHHHHHHHHHHHHHHHHCCTTEEEE-EC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC-
T ss_pred             CccChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC-
Confidence            345567899999999999  668899886 55 68999999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcc-cCCCceecccCC--CCccccCcHHHHHHHHHHhhcCCCCCCcc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNI-DLEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTVMLDHSIF  177 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI-~~~G~iCl~~L~--e~W~p~~ti~siL~sI~~lL~~P~~~sp~  177 (182)
                                                    +||||| +.+|.|||++|.  ++|+|+++|++||.+|++||.+|+++||+
T Consensus        95 ------------------------------i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pl  144 (169)
T 1yrv_A           95 ------------------------------PFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPV  144 (169)
T ss_dssp             ------------------------------CCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCS
T ss_pred             ------------------------------CccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCch
Confidence                                          999999 789999999998  89999999999999999999999999999


Q ss_pred             cc
Q 030126          178 FA  179 (182)
Q Consensus       178 ~~  179 (182)
                      ++
T Consensus       145 n~  146 (169)
T 1yrv_A          145 NL  146 (169)
T ss_dssp             CH
T ss_pred             hH
Confidence            75

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.3e-36  Score=254.21  Aligned_cols=123  Identities=27%  Similarity=0.524  Sum_probs=114.2

Q ss_pred             CccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           24 VKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      ..+.+.+.+||++|++++  ..++|+.+. +. ++|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|+ 
T Consensus        18 ~~~~s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~-   94 (216)
T 2pwq_A           18 YFQGSKELLRLQKELKDIENENVQEIDAH-IK-DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTK-   94 (216)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHSCTTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCC-
Confidence            345668899999999999  667899887 44 57999999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                    +|||||+. +|.|||++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        95 ------------------------------i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~  144 (216)
T 2pwq_A           95 ------------------------------IWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDA  144 (216)
T ss_dssp             ------------------------------CCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ------------------------------CcCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence                                          99999995 99999999999999999999999999999999999999985

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=2.2e-36  Score=249.02  Aligned_cols=120  Identities=23%  Similarity=0.534  Sum_probs=111.3

Q ss_pred             ccHHHHHHHHHHHhcCC-----CCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           27 QCAGELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l~~-----~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      +..+.+||++|++++..     +.|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+ 
T Consensus         3 s~~a~~Rl~kEl~~l~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~-   79 (201)
T 3k9o_A            3 ANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK-   79 (201)
T ss_dssp             -CTTHHHHHHHHHHHHTCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC-
Confidence            34678999999999933     5788886 44 57999999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                    +|||||+. +|.||+++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        80 ------------------------------i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~  129 (201)
T 3k9o_A           80 ------------------------------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA  129 (201)
T ss_dssp             ------------------------------CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ------------------------------cccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccH
Confidence                                          99999996 99999999999999999999999999999999999999986

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=3.3e-36  Score=238.67  Aligned_cols=120  Identities=25%  Similarity=0.513  Sum_probs=111.3

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      +.+.+||++|++++  +.++|+.+..++ ++|+++|++.|.|++|||+||.|++.|.||++||++||+|+|.|+      
T Consensus         3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~-~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~------   75 (155)
T 1wzv_A            3 HMASMRVVKELEDLQKKPPPYLRNLSSD-DANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTK------   75 (155)
T ss_dssp             --CHHHHHHHHHHHHHSCCTTEEEEEEC-SSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSC------
T ss_pred             chHHHHHHHHHHHHHhCCCCCEEEEecC-CCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCC------
Confidence            45789999999999  677899884455 689999999988999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccC-CCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-REDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L-~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.||+++| .++|+|+++|++||.+|++||.+|+++||++.
T Consensus        76 -------------------------i~HPnV~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  125 (155)
T 1wzv_A           76 -------------------------IYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRM  125 (155)
T ss_dssp             -------------------------CCBTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSH
T ss_pred             -------------------------CccCcCCCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHH
Confidence                                     99999999999999999 89999999999999999999999999999875

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=2.7e-36  Score=240.05  Aligned_cols=121  Identities=27%  Similarity=0.506  Sum_probs=111.6

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccC---CCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccc
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPN---GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVD  101 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~---~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~  101 (182)
                      ..+.+||++|++++  +.++|+.+....   +++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+  
T Consensus         3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--   80 (157)
T 2gjd_A            3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG--   80 (157)
T ss_dssp             CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT--
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC--
Confidence            46889999999999  778899886321   225899999999 9999999999999999999999999999999999  


Q ss_pred             hhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCC--CccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          102 IFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e--~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                   +|||||+.+|.||+++|.+  +|+|+++|++||.+|++||.+|++++|++.
T Consensus        81 -----------------------------i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  131 (157)
T 2gjd_A           81 -----------------------------FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQE  131 (157)
T ss_dssp             -----------------------------CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCH
T ss_pred             -----------------------------CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCH
Confidence                                         9999999999999999987  799999999999999999999999999975

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=3.2e-36  Score=247.99  Aligned_cols=125  Identities=26%  Similarity=0.491  Sum_probs=108.8

Q ss_pred             CCCccccHHHHHHHHHHHhc--CCC-------------CCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCC
Q 030126           22 TPVKKQCAGELRLHKDITEL--NLP-------------EACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPP   85 (182)
Q Consensus        22 ~~~~~~~~a~kRL~kE~~~l--~~~-------------~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~   85 (182)
                      +.......+.+||++|++++  +.+             .|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||+
T Consensus        25 ~~~~~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~  102 (193)
T 2f4z_A           25 AQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQ-IV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPP  102 (193)
T ss_dssp             -------CHHHHHHHHHHHHHHC----------------CEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEE-Ec-CCCcceEEEEEeCCCCCCcCCCEEEEEEECCC
Confidence            44455567889999999999  333             688886 44 47999999999 99999999999999999999


Q ss_pred             CCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHH
Q 030126           86 IYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGL  164 (182)
Q Consensus        86 ~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI  164 (182)
                      +||++||+|+|.|+                               +|||||+. +|.|||++|.++|+|+++|++||.+|
T Consensus       103 ~YP~~PP~V~F~T~-------------------------------i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI  151 (193)
T 2f4z_A          103 DYPYNPPKMKFVTK-------------------------------IWHPNISSQTGAICLDILKHEWSPALTIRTALLSI  151 (193)
T ss_dssp             TTTTSCCEEEESSC-------------------------------CCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHH
T ss_pred             cCCCCCCeEEEecC-------------------------------CccCCCcCCCCEEECccccccCCCCCCHHHHHHHH
Confidence            99999999999999                               99999995 99999999999999999999999999


Q ss_pred             HHhhcCCCCCCcccc
Q 030126          165 YHLFTVMLDHSIFFA  179 (182)
Q Consensus       165 ~~lL~~P~~~sp~~~  179 (182)
                      ++||.+|++++|+++
T Consensus       152 ~sll~~pnp~~P~n~  166 (193)
T 2f4z_A          152 QAMLADPVPTDPQDA  166 (193)
T ss_dssp             HHHHHSCCTTSCSCH
T ss_pred             HHHHhCCCCCCcccH
Confidence            999999999999985

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=3.5e-36  Score=238.31  Aligned_cols=119  Identities=33%  Similarity=0.570  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      .+.+||++|++++  +.++|+.+. +.+++|++.|++.|.|++|||+||.|+++|.||++||++||+|+|.|+       
T Consensus         2 ~a~~RL~kEl~~l~~~~~~~~~~~-~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-------   73 (154)
T 1c4z_D            2 AASRRLMKELEEIRKCGMKNFRNI-QVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTK-------   73 (154)
T ss_dssp             --CTTHHHHHTTCSSSCCSSCEEE-CSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSC-------
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEe-eCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCC-------
Confidence            4678999999999  456788764 334789999999999999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+.+|.||+++|. ++|+|++||++||.+|++||.+|+++||+++
T Consensus        74 ------------------------i~HPnv~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  123 (154)
T 1c4z_D           74 ------------------------IYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA  123 (154)
T ss_dssp             ------------------------CCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCH
T ss_pred             ------------------------CccccCCCCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhH
Confidence                                    999999999999999996 8899999999999999999999999999975

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.2e-36  Score=254.24  Aligned_cols=119  Identities=29%  Similarity=0.557  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      ++.+||++|++++  ..++||++. +.++++++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+      
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~-p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~------   74 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK------   74 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEEC-CCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTT------
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCC------
Confidence            4679999999999  668899986 55345778999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+. +|.|||++|.++|+|++||++||.+|++||.+|++++|+++
T Consensus        75 -------------------------i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~  124 (215)
T 1tte_A           75 -------------------------VYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDA  124 (215)
T ss_dssp             -------------------------CCCSSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCH
T ss_pred             -------------------------CccCcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCH
Confidence                                     99999999 99999999999999999999999999999999999999986

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=1e-35  Score=237.61  Aligned_cols=123  Identities=28%  Similarity=0.468  Sum_probs=112.5

Q ss_pred             cccHHHHHHHHHHHhc--CCCCCceEEcc---CCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           26 KQCAGELRLHKDITEL--NLPEACKISFP---NGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~---~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ++..+.+||++|++++  +.++|+.+...   ++++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+
T Consensus         4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   83 (161)
T 2grr_A            4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP   83 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence            3456889999999999  67889988632   2246899999999 9999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCC--CccccCcHHHHHHHHHHhhcCCCCCCcc
Q 030126          100 VDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTVMLDHSIF  177 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e--~W~p~~ti~siL~sI~~lL~~P~~~sp~  177 (182)
                                                     +|||||+.+|.||+++|.+  +|+|+++|++||.+|++||.+|++++|+
T Consensus        84 -------------------------------i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~  132 (161)
T 2grr_A           84 -------------------------------LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPA  132 (161)
T ss_dssp             -------------------------------CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred             -------------------------------cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCcc
Confidence                                           9999999999999999976  8999999999999999999999999998


Q ss_pred             cc
Q 030126          178 FA  179 (182)
Q Consensus       178 ~~  179 (182)
                      +.
T Consensus       133 n~  134 (161)
T 2grr_A          133 QA  134 (161)
T ss_dssp             CH
T ss_pred             CH
Confidence            75

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=2.3e-35  Score=236.77  Aligned_cols=122  Identities=19%  Similarity=0.319  Sum_probs=109.5

Q ss_pred             cccHHHHHHHHHHHhc--CCCCC-ceEEccCCCCC--cceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           26 KQCAGELRLHKDITEL--NLPEA-CKISFPNGQDD--LMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g-~~~~~~~~~~n--~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ....+.+||++|++++  +.++| +.+...+ ++|  ++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        22 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTSSEEEEESS-TTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             eechHHHHHHHHHHHHHhCCCCCcEEEEecC-CccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            3467889999999999  44667 6665434 444  89999999 9999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhhhhhhhhhhhhccCccccccCccc-CCCceecccCC--CCccccCcHHHHHHHHHHhhc-CCCCCC
Q 030126          100 VDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFT-VMLDHS  175 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~-~~G~iCl~~L~--e~W~p~~ti~siL~sI~~lL~-~P~~~s  175 (182)
                                                     +|||||+ .+|.||+++|.  ++|+|++||++||.+|++||. +||+++
T Consensus       101 -------------------------------i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~  149 (160)
T 2a4d_A          101 -------------------------------INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKL  149 (160)
T ss_dssp             -------------------------------CCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTC
T ss_pred             -------------------------------ceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCC
Confidence                                           9999999 59999999998  899999999999999999995 699999


Q ss_pred             cccc
Q 030126          176 IFFA  179 (182)
Q Consensus       176 p~~~  179 (182)
                      |+++
T Consensus       150 P~n~  153 (160)
T 2a4d_A          150 PQPP  153 (160)
T ss_dssp             CCCC
T ss_pred             CCCh
Confidence            9876

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=1.4e-35  Score=239.52  Aligned_cols=123  Identities=25%  Similarity=0.448  Sum_probs=108.9

Q ss_pred             cccHHHHHHHHHHHhcCC---C------CC---ceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCC
Q 030126           26 KQCAGELRLHKDITELNL---P------EA---CKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAP   92 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l~~---~------~g---~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP   92 (182)
                      +...+.+||++|++++.+   +      ++   +....+.+++|++.|++.| ||++|||+||.|+++|.||++||++||
T Consensus         3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP   82 (172)
T 2y9m_A            3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP   82 (172)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence            345788999999999943   2      32   2222463478999999999 999999999999999999999999999


Q ss_pred             eeEEee-ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCccc-CCCceecccCC-CCccccCcHHHHHHHHHHhhc
Q 030126           93 KVKCKT-KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFT  169 (182)
Q Consensus        93 ~v~f~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~-~~G~iCl~~L~-e~W~p~~ti~siL~sI~~lL~  169 (182)
                      +|+|.| +                               +|||||+ .+|.|||++|. ++|+|+++|++||.+|++||.
T Consensus        83 ~v~f~t~~-------------------------------i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~  131 (172)
T 2y9m_A           83 KISFMQNN-------------------------------ILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLR  131 (172)
T ss_dssp             EEEECTTS-------------------------------CCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHH
T ss_pred             EEEEeeCC-------------------------------eecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHh
Confidence            999999 8                               9999996 69999999998 899999999999999999999


Q ss_pred             CCCCCCcccc
Q 030126          170 VMLDHSIFFA  179 (182)
Q Consensus       170 ~P~~~sp~~~  179 (182)
                      +|+++||++.
T Consensus       132 ~p~~~~p~n~  141 (172)
T 2y9m_A          132 EPVCDSPLDV  141 (172)
T ss_dssp             SCCTTSCSSH
T ss_pred             CCCCCCccCH
Confidence            9999999875

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-35  Score=231.45  Aligned_cols=107  Identities=24%  Similarity=0.583  Sum_probs=100.3

Q ss_pred             HHHHHHHHHhc--CCCCCceEEc-cCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           31 ELRLHKDITEL--NLPEACKISF-PNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        31 ~kRL~kE~~~l--~~~~g~~~~~-~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      .+||++|++++  +.++|+.+.. ++ ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+       
T Consensus        24 ~~RL~kEl~~l~~~~~~gi~v~~~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~-------   95 (136)
T 2a7l_A           24 QKRLQKELLALQNDPPPGMTLNEKSV-QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE-------   95 (136)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCC-CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS-------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeC-ccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC-------
Confidence            49999999999  6788988753 44 78999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccc--cCcccCCCceecccCCCCccccCcHHHHHHHHHHhhc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVY--HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT  169 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~--HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~  169 (182)
                                              +|  ||||+.+|.||+++|.++|+|++||++||.+|++||+
T Consensus        96 ------------------------i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A           96 ------------------------NIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             ------------------------CCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             ------------------------CcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence                                    78  9999999999999999999999999999999999985

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=3.1e-35  Score=234.80  Aligned_cols=124  Identities=19%  Similarity=0.329  Sum_probs=111.3

Q ss_pred             CccccHHHHHHHHHHHhcC---CCCCceEEccCC-CCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126           24 VKKQCAGELRLHKDITELN---LPEACKISFPNG-QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l~---~~~g~~~~~~~~-~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t   98 (182)
                      ......+.+||++|++++.   .++|+++..... +.|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        16 ~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t   95 (156)
T 2q0v_A           16 FQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT   95 (156)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred             CcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc
Confidence            3455678899999999993   467888875332 23699999999 999999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCce---ecccCCCCccccCcHHHHHHHHHHhhcCCCCCC
Q 030126           99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNV---CLNVLREDWKPVLNINTIIYGLYHLFTVMLDHS  175 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~i---Cl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~s  175 (182)
                      +                               +|||||+.+|.|   ||++|+ +|+|+++|++||.+|++||.+|++++
T Consensus        96 ~-------------------------------i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~  143 (156)
T 2q0v_A           96 K-------------------------------IEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKR  143 (156)
T ss_dssp             C-------------------------------CCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTT
T ss_pred             c-------------------------------cccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCC
Confidence            9                               999999999999   899987 59999999999999999999999999


Q ss_pred             cccc
Q 030126          176 IFFA  179 (182)
Q Consensus       176 p~~~  179 (182)
                      |++.
T Consensus       144 p~n~  147 (156)
T 2q0v_A          144 LPQP  147 (156)
T ss_dssp             CCCC
T ss_pred             cCCh
Confidence            9875

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=2.1e-35  Score=252.19  Aligned_cols=123  Identities=23%  Similarity=0.519  Sum_probs=114.1

Q ss_pred             CccccHHHHHHHHHHHhcC-----CCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030126           24 VKKQCAGELRLHKDITELN-----LPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l~-----~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~   97 (182)
                      ..+...+.+||++|+++|.     .+.|+++. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.
T Consensus        52 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~-p~-~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~  129 (253)
T 3e46_A           52 FDMANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI  129 (253)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             ccccHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec
Confidence            4456789999999999993     36788886 44 57999999999 99999999999999999999999999999999


Q ss_pred             eccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCc
Q 030126           98 TKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSI  176 (182)
Q Consensus        98 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp  176 (182)
                      |+                               +|||||+. +|.|||++|.++|+|+++|++||.+|++||.+|+++||
T Consensus       130 T~-------------------------------i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~P  178 (253)
T 3e46_A          130 TK-------------------------------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP  178 (253)
T ss_dssp             SC-------------------------------CCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSC
T ss_pred             CC-------------------------------CccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCCh
Confidence            99                               99999996 99999999999999999999999999999999999999


Q ss_pred             ccc
Q 030126          177 FFA  179 (182)
Q Consensus       177 ~~~  179 (182)
                      +++
T Consensus       179 ln~  181 (253)
T 3e46_A          179 QDA  181 (253)
T ss_dssp             SCH
T ss_pred             hhH
Confidence            985

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=1.5e-35  Score=231.27  Aligned_cols=120  Identities=23%  Similarity=0.466  Sum_probs=106.9

Q ss_pred             cHHHHHHHHHHHhc--C-CCCCceEEccCCCC-CcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           28 CAGELRLHKDITEL--N-LPEACKISFPNGQD-DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~-~~~g~~~~~~~~~~-n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      ..+.+||++|++++  + .++|+++...+.++ |+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+   
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~---   81 (138)
T 1jat_B            5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK---   81 (138)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC---
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc---
Confidence            46779999999999  3 46788887533222 699999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCC-Cce--ecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-GNV--CLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~-G~i--Cl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                  +|||||+.+ |.|  ||++|. +|+|+++|++||.+|++||.+|+++||++.
T Consensus        82 ----------------------------i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~  132 (138)
T 1jat_B           82 ----------------------------INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQP  132 (138)
T ss_dssp             ----------------------------CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCC
T ss_pred             ----------------------------cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCc
Confidence                                        999999996 999  999886 899999999999999999999999999875

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=5.7e-36  Score=237.45  Aligned_cols=117  Identities=25%  Similarity=0.487  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhH
Q 030126           29 AGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNF  107 (182)
Q Consensus        29 ~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~  107 (182)
                      ++.+||++|++++.. .|+.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+        
T Consensus         2 sa~~Rl~kEl~~l~~-~~~~v~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--------   70 (152)
T 2onu_A            2 TSLTRKQCDFTKLIM-AGYDLE-LN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK--------   70 (152)
T ss_dssp             -CCCHHHHTHHHHHH-HTCCEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--------
T ss_pred             hHHHHHHHHHHhcCc-CCCEEE-Ec-cCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecC--------
Confidence            345899999999954 488876 44 58999999999 9999999999999999999999999999999999        


Q ss_pred             HHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHH-HHHhhcCCCCCCcccc
Q 030126          108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTVMLDHSIFFA  179 (182)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~s-I~~lL~~P~~~sp~~~  179 (182)
                                             +|||||+. +|.||+++|.++|+|+++|++||.+ |++||.+|+++||++.
T Consensus        71 -----------------------i~HPni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~  121 (152)
T 2onu_A           71 -----------------------LLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNS  121 (152)
T ss_dssp             -----------------------CCCTTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSH
T ss_pred             -----------------------CccCcCcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccH
Confidence                                   99999995 9999999999999999999999999 6899999999999974

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=9e-35  Score=235.08  Aligned_cols=121  Identities=18%  Similarity=0.316  Sum_probs=108.6

Q ss_pred             ccHHHHHHHHHHHhc--CCCCC-ceEEccCCCC--CcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           27 QCAGELRLHKDITEL--NLPEA-CKISFPNGQD--DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g-~~~~~~~~~~--n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      ...+.+||++|++++  +.++| +.+...+ ++  |+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+ 
T Consensus        33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~-  110 (170)
T 2hlw_A           33 KVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK-  110 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHCCGGGCEEEEESS-TTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBC-
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCcEEEEecC-cccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecc-
Confidence            355789999999999  45667 5565334 44  499999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCccc-CCCceecccCC--CCccccCcHHHHHHHHHHhhcC-CCCCCc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTV-MLDHSI  176 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~-~~G~iCl~~L~--e~W~p~~ti~siL~sI~~lL~~-P~~~sp  176 (182)
                                                    +|||||+ .+|.||+++|.  ++|+|++||++||.+|++||.+ ||+++|
T Consensus       111 ------------------------------i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P  160 (170)
T 2hlw_A          111 ------------------------------INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLP  160 (170)
T ss_dssp             ------------------------------CCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSC
T ss_pred             ------------------------------cccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCC
Confidence                                          9999999 69999999998  8999999999999999999985 999999


Q ss_pred             ccc
Q 030126          177 FFA  179 (182)
Q Consensus       177 ~~~  179 (182)
                      +++
T Consensus       161 ~n~  163 (170)
T 2hlw_A          161 QPP  163 (170)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            875

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=239.71  Aligned_cols=117  Identities=25%  Similarity=0.520  Sum_probs=109.5

Q ss_pred             cHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           28 CAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        28 ~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +.+.+||++|++++. ++|+.+. +.  +|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+       
T Consensus        24 ~~a~~RL~kEl~~l~-~~g~~v~-~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~-------   92 (179)
T 2z5d_A           24 SPGKRRMDTDVIKLI-ESKHEVT-IL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK-------   92 (179)
T ss_dssp             CHHHHHHHHHHHHHH-HSSSCEE-EE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-------
T ss_pred             hHHHHHHHHHHHhcC-cCCCEEE-EC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC-------
Confidence            368899999999996 4688886 33  5789999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHH-HHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~s-I~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+. +|.||+++|.++|+|+++|++||.+ |++||.+|+++||++.
T Consensus        93 ------------------------i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~  143 (179)
T 2z5d_A           93 ------------------------IFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNG  143 (179)
T ss_dssp             ------------------------CCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCH
T ss_pred             ------------------------CccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCH
Confidence                                    99999999 9999999999999999999999999 9999999999999874

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=8.4e-34  Score=254.50  Aligned_cols=119  Identities=30%  Similarity=0.702  Sum_probs=113.0

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +.+.+||++|++++  +.++|+++. |. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~-----   74 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----   74 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSC-----
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecc-----
Confidence            36789999999999  678899886 55 58999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.||+++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        75 --------------------------i~HPnv~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~  123 (399)
T 4ddg_A           75 --------------------------IYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP  123 (399)
T ss_dssp             --------------------------CCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSH
T ss_pred             --------------------------ccccccCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhH
Confidence                                      9999999999999999999999999999999999999999999999975

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-34  Score=234.00  Aligned_cols=117  Identities=24%  Similarity=0.478  Sum_probs=105.2

Q ss_pred             cHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           28 CAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        28 ~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +++.+||++|++++...+ +.+  +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+       
T Consensus        11 ~~~~~RL~~El~~l~~~~-~~v--~~-~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~-------   79 (171)
T 1yf9_A           11 LRSNRRREMDYMRLCNST-RKV--YP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR-------   79 (171)
T ss_dssp             --CCHHHHHHHHHHHSSS-SCE--EE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-------
T ss_pred             ccHHHHHHHHHHHHHhCC-CCC--CC-CCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecC-------
Confidence            456799999999994332 334  23 58999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHH-HHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGL-YHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI-~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+. +|.||+++|.++|+|+++|++||.+| ++||.+|+++||++.
T Consensus        80 ------------------------i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~  130 (171)
T 1yf9_A           80 ------------------------ILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNV  130 (171)
T ss_dssp             ------------------------CCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCH
T ss_pred             ------------------------cccccCcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccH
Confidence                                    99999995 99999999999999999999999997 799999999999874

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=2.2e-33  Score=225.30  Aligned_cols=122  Identities=23%  Similarity=0.413  Sum_probs=107.5

Q ss_pred             ccccHHHHHHHHHHHhcC--C------------CCCceEEccCCCCCcceeEEee-cCCCCccC--CcEEEEEEEcCCCC
Q 030126           25 KKQCAGELRLHKDITELN--L------------PEACKISFPNGQDDLMNFEVSI-KPDEGYYQ--NGTFVFSFEVPPIY   87 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l~--~------------~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYe--gg~f~~~i~fp~~Y   87 (182)
                      ++++.+.+||++|++++.  .            +.|+.+. ++ ++|+++|++.| ||++|||+  ||.|++.|.||++|
T Consensus         4 ~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~Y   81 (167)
T 4ds2_A            4 SMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFS-VD-TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDY   81 (167)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEE-EE-ESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTT
T ss_pred             cccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEE-eC-CCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCC
Confidence            344567799999999993  2            4567765 44 68999999999 99999999  99999999999999


Q ss_pred             CCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHH-HHHHH
Q 030126           88 PHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTII-YGLYH  166 (182)
Q Consensus        88 P~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL-~sI~~  166 (182)
                      |++||+|+|.|+                               +|||||+.+|.||+++|.++|+|+++++++| ..|++
T Consensus        82 P~~pP~v~f~t~-------------------------------i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~  130 (167)
T 4ds2_A           82 PHEPPTVRFVTP-------------------------------VYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDR  130 (167)
T ss_dssp             TTSCCEEEESSC-------------------------------CCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCC-------------------------------cccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHH
Confidence            999999999999                               9999999999999999999999999999975 46778


Q ss_pred             hhcC--CCCCCcccc
Q 030126          167 LFTV--MLDHSIFFA  179 (182)
Q Consensus       167 lL~~--P~~~sp~~~  179 (182)
                      |+.+  |++++|++.
T Consensus       131 l~~~~~pn~~~p~n~  145 (167)
T 4ds2_A          131 VFSQYKSRRDDDVNP  145 (167)
T ss_dssp             HHTSTTSCCSCCCCH
T ss_pred             HHhcCCCCCcchHhH
Confidence            8875  899999875

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.98  E-value=1.7e-32  Score=224.52  Aligned_cols=119  Identities=16%  Similarity=0.331  Sum_probs=99.4

Q ss_pred             CccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           24 VKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      .++...+.+||++|++++  +.++||.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+ 
T Consensus         9 ~~~~~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~-   85 (187)
T 2f4w_A            9 KRAPTTATQRLKQDYLRIKKDPVPYICAE-PL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP-   85 (187)
T ss_dssp             -----CHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC-
T ss_pred             CCCccHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC-
Confidence            356678899999999999  578899886 54 68999999999 9999999999999999999999999999999977 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccC---CCCccccCcHHHHHHHHHHhhcCCCCCCcc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL---REDWKPVLNINTIIYGLYHLFTVMLDHSIF  177 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L---~e~W~p~~ti~siL~sI~~lL~~P~~~sp~  177 (182)
                                                      ||||+.+|.|||++|   .++|+|+++|.+||.+|++||.+|+++..-
T Consensus        86 --------------------------------~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g~  133 (187)
T 2f4w_A           86 --------------------------------NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGS  133 (187)
T ss_dssp             --------------------------------CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTB
T ss_pred             --------------------------------CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCcc
Confidence                                            889999999999999   689999999999999999999999987543

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.97  E-value=3.4e-32  Score=239.43  Aligned_cols=129  Identities=25%  Similarity=0.433  Sum_probs=111.2

Q ss_pred             ccccHHHHHHHHHHHhc--CCCCCce--EEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           25 KKQCAGELRLHKDITEL--NLPEACK--ISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l--~~~~g~~--~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      .....+.+||++|+++|  ..|+|+.  +.+...++|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|+
T Consensus        72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~  151 (323)
T 3ceg_A           72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT  151 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence            45678999999999999  5566643  22222268999999999 9999999999999999999999999999999998


Q ss_pred             cchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------CCccccC-cHHHHHHHHHHhhc--
Q 030126          100 VDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------EDWKPVL-NINTIIYGLYHLFT--  169 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------e~W~p~~-ti~siL~sI~~lL~--  169 (182)
                                                +++..+|||||+.+|.|||++|.       ++|+|++ ||.+||++|++||.  
T Consensus       152 --------------------------~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~  205 (323)
T 3ceg_A          152 --------------------------GGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVA  205 (323)
T ss_dssp             --------------------------TTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCS
T ss_pred             --------------------------CCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCC
Confidence                                      23334899999999999999997       6899999 89999999999996  


Q ss_pred             CCCCCCcccc
Q 030126          170 VMLDHSIFFA  179 (182)
Q Consensus       170 ~P~~~sp~~~  179 (182)
                      +|++++|++.
T Consensus       206 ~Pn~~dP~~~  215 (323)
T 3ceg_A          206 EPYFNEPGYE  215 (323)
T ss_dssp             SGGGGSTTGG
T ss_pred             CCCCCCccCH
Confidence            7777999875

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.97  E-value=3.8e-32  Score=222.35  Aligned_cols=119  Identities=17%  Similarity=0.327  Sum_probs=105.4

Q ss_pred             CCccccHHHHHHHHHHHhcCC-----CCCceEEccCCCCCcceeEEee-cC-CCCccCC-----------cEEEEEEEcC
Q 030126           23 PVKKQCAGELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KP-DEGYYQN-----------GTFVFSFEVP   84 (182)
Q Consensus        23 ~~~~~~~a~kRL~kE~~~l~~-----~~g~~~~~~~~~~n~~~w~v~i-gp-~~tpYeg-----------g~f~~~i~fp   84 (182)
                      ...+...+.+||++|++++..     +.|+.+. +. ++|++.|++.| || ++|||+|           |.|++.|.||
T Consensus        21 ~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~-p~-~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp   98 (186)
T 1zuo_A           21 AVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE-LI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFK   98 (186)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTSHHHHTTSEEEE-EE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             cccccHHHHHHHHHHHHHHHhCCCCCCCcEEEE-Ec-CCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECC
Confidence            344566889999999999933     4678876 44 58999999999 97 8999998           8999999999


Q ss_pred             CCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccC-cccCCCceecccCC-CCccccCcHHHHHH
Q 030126           85 PIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHP-NIDLEGNVCLNVLR-EDWKPVLNINTIIY  162 (182)
Q Consensus        85 ~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HP-nI~~~G~iCl~~L~-e~W~p~~ti~siL~  162 (182)
                      ++||++||+|+|.|+                               ++|| ||+.+|.|||++|. ++|+|+++|++||.
T Consensus        99 ~~YP~~PP~V~f~tp-------------------------------i~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~  147 (186)
T 1zuo_A           99 DNFPFDPPFVRVVLP-------------------------------VLSGGYVLGGGALCMELLTKQGWSSAYSIESVIM  147 (186)
T ss_dssp             TTTTSSCCEEEEEES-------------------------------CEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHH
T ss_pred             CCCCCCCCeEEEeCC-------------------------------ccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHH
Confidence            999999999999999                               9999 69999999999997 78999999999999


Q ss_pred             HHHHhhcCCCCC
Q 030126          163 GLYHLFTVMLDH  174 (182)
Q Consensus       163 sI~~lL~~P~~~  174 (182)
                      +|++||.+|+..
T Consensus       148 sI~slL~~p~a~  159 (186)
T 1zuo_A          148 QINATLVKGKAR  159 (186)
T ss_dssp             HHHHHHHHTTCE
T ss_pred             HHHHHHcCCChh
Confidence            999999999754

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.86  E-value=4.8e-23  Score=166.68  Aligned_cols=102  Identities=15%  Similarity=0.201  Sum_probs=88.6

Q ss_pred             ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCc----------EEEEEEEcCCCCCCCCCe
Q 030126           25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHDAPK   93 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg----------~f~~~i~fp~~YP~~pP~   93 (182)
                      ...-...+||.+|++.+.+    ++ .+. .+|++.|.+.+ ||.+|+|+||          .|.++|.||++||.+||+
T Consensus        28 ~~~~~w~~RL~eE~k~L~k----~v-~p~-k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPe  101 (172)
T 2z6o_A           28 RDRELWVQRLKEEYQSLIR----YV-ENN-KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPE  101 (172)
T ss_dssp             TCTHHHHHHHHHHHHHHHH----HH-HHH-HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             CccHHHHHHHHHHHHHHHH----Hh-ccC-ccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCe
Confidence            4456779999999999955    22 233 57999999999 9999999999          999999999999999999


Q ss_pred             eEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-C---CccccCcHHHHHH
Q 030126           94 VKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-E---DWKPVLNINTIIY  162 (182)
Q Consensus        94 v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e---~W~p~~ti~siL~  162 (182)
                      |+|.+..                              ++|||||.+|+||||+|. .   .|+|.++|..+|.
T Consensus       102 V~F~~~~------------------------------~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          102 IAVPELD------------------------------GKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             CBCGGGT------------------------------TTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred             eeeCCCC------------------------------CCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence            9999874                              899999999999999994 3   4559999999974

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.70  E-value=2.5e-17  Score=132.52  Aligned_cols=121  Identities=18%  Similarity=0.273  Sum_probs=87.7

Q ss_pred             HHHHHHHHhc-CCCCCceEE---ccCCCCCcceeEEee-cCCCCccCCcE---EEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           32 LRLHKDITEL-NLPEACKIS---FPNGQDDLMNFEVSI-KPDEGYYQNGT---FVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        32 kRL~kE~~~l-~~~~g~~~~---~~~~~~n~~~w~v~i-gp~~tpYegg~---f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      +|..+|..++ ..-+++..+   ... +|...++-+.+ |.-..+|+||+   |.+.|.||.+||++||.|.|.++.   
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~-~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t---  106 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTH-SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLEN---  106 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEEC-TTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGG---
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEc-CCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCC---
Confidence            4555666655 222222222   122 36667777777 87789999999   889999999999999999775421   


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccc-cCcccCCCceecccCCCCccc-cCcHHHHHHHHHHhhcCCCCCC
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVY-HPNIDLEGNVCLNVLREDWKP-VLNINTIIYGLYHLFTVMLDHS  175 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-HPnI~~~G~iCl~~L~e~W~p-~~ti~siL~sI~~lL~~P~~~s  175 (182)
                                      .+|..  ..-.++ |||||.+|+||++.|. +|+| +.++.++|.+|+++|.+|+++.
T Consensus       107 ----------------~~m~~--~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          107 ----------------FDMNT--ISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             ----------------CCTTT--SCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             ----------------ccccc--cccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence                            00000  000156 9999999999999995 6999 6899999999999999999974

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.58  E-value=1.9e-16  Score=126.40  Aligned_cols=94  Identities=14%  Similarity=0.263  Sum_probs=76.6

Q ss_pred             ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCc----------EEEEEEEcCCCCCCCCCe
Q 030126           25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHDAPK   93 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg----------~f~~~i~fp~~YP~~pP~   93 (182)
                      ........||.+||..|     |... ....++-..|...+ |+.+|+|+|+          .|.++|+||.+||..||+
T Consensus        30 rd~~~w~~RlkeEy~al-----I~yv-~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPe  103 (168)
T 3kpa_A           30 RDGDKWTARLKEEYASL-----ITYV-EHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPE  103 (168)
T ss_dssp             TSTHHHHHHHHHHHHHH-----HHHH-HHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             CCHHHHHHHHHHHHHHH-----HHHH-HhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCE
Confidence            33456889999999987     3221 11123335788888 9999999999          999999999999999999


Q ss_pred             eEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcH
Q 030126           94 VKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNI  157 (182)
Q Consensus        94 v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti  157 (182)
                      |+|.+..                              .+|||+|.+|+||||++   |+|+|+-
T Consensus       104 I~Fp~ld------------------------------gkt~kmYr~GkICLdIh---wkPlW~~  134 (168)
T 3kpa_A          104 IALPELE------------------------------GKTVKMYRGGKICMTTH---FFPLWAR  134 (168)
T ss_dssp             CBCGGGT------------------------------TTCSSEETTTEECCCTT---HHHHHHH
T ss_pred             eeccccc------------------------------CcCccccCCCcEEeccc---cchhhHh
Confidence            9998863                              79999999999999997   8887763

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.34  E-value=1.7e-12  Score=102.63  Aligned_cols=86  Identities=22%  Similarity=0.323  Sum_probs=72.7

Q ss_pred             CCCcceeEEeecCCCCccCCcEEEE--EEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccc
Q 030126           55 QDDLMNFEVSIKPDEGYYQNGTFVF--SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVY  132 (182)
Q Consensus        55 ~~n~~~w~v~igp~~tpYegg~f~~--~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  132 (182)
                      ..++..|..+|.   .+|+|++|.+  .|-||++||++||.| |.++.                         .+-.+.+
T Consensus        50 ~~~LL~l~GtIp---v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt-------------------------~~m~I~~  100 (146)
T 3obq_A           50 SRELMNLTGTIP---VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPT-------------------------SSMTIKT  100 (146)
T ss_dssp             TCEEEEEEEEEE---EECSSCEEEEEEEEECCTTTTTSCCEE-EECCC-------------------------TTEEECC
T ss_pred             hheEEEEEEEee---eeecCccccceEEEEeCccCCCCCCEE-EEeCC-------------------------CCCEECC
Confidence            468888888885   6799999995  899999999999999 66662                         1222358


Q ss_pred             cCcccCCCceecccCCCCccc-cCcHHHHHHHHHHhhcC
Q 030126          133 HPNIDLEGNVCLNVLREDWKP-VLNINTIIYGLYHLFTV  170 (182)
Q Consensus       133 HPnI~~~G~iCl~~L~e~W~p-~~ti~siL~sI~~lL~~  170 (182)
                      |||||.+|+||++.|.+ |++ ..+|.+++..+++.|.+
T Consensus       101 ~~~Vd~~G~i~lpyL~~-W~~~~snL~~ll~~l~~~F~~  138 (146)
T 3obq_A          101 GKHVDANGKIYLPYLHE-WKHPQSDLLGLIQVMIVVFGD  138 (146)
T ss_dssp             BTTBCTTCBBCCHHHHT-CCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEecccccc-cCCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999965 988 79999999999999986

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.94  E-value=0.044  Score=40.52  Aligned_cols=68  Identities=10%  Similarity=0.168  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEeecCC-CCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           30 GELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPD-EGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        30 a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~igp~-~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ...+...|+..|...-+-.+..-  .+....+.+.+.+. +..-+.-.+.+.|.+|++||..||.+.+.++
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~   79 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQ   79 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEcC
Confidence            44566788877732212222211  12346677777332 2222334788999999999999999998874

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=94.88  E-value=0.18  Score=37.67  Aligned_cols=70  Identities=13%  Similarity=0.218  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhcCCCCCceEEccCCC------CCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           30 GELRLHKDITELNLPEACKISFPNGQ------DDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        30 a~kRL~kE~~~l~~~~g~~~~~~~~~------~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ...+...|+..|...-|-.+......      +....+.+.+.+....-..-...+.|.+|++||..+|.|.+.+.
T Consensus        11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   86 (138)
T 2yz0_A           11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFKNV   86 (138)
T ss_dssp             HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred             hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence            34456777877743322223221110      12456777775432221234788999999999999999998765

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=94.10  E-value=0.22  Score=36.68  Aligned_cols=67  Identities=19%  Similarity=0.392  Sum_probs=38.3

Q ss_pred             HHHHHHHhcCC--CCCceEEccCCCCCcceeEEeecCC-CCcc--CCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           33 RLHKDITELNL--PEACKISFPNGQDDLMNFEVSIKPD-EGYY--QNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        33 RL~kE~~~l~~--~~g~~~~~~~~~~n~~~w~v~igp~-~tpY--egg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      +...|+..|..  +..+...-.........+.+.+.+. +..-  ..-.+.+.|.+|++||..+|.|.+.+.
T Consensus        12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            46677776622  2333332111001234455555332 1111  124788999999999999999998876

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=93.08  E-value=0.76  Score=33.97  Aligned_cols=69  Identities=13%  Similarity=0.212  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhcCC--CCCceEEccCCCC-----CcceeEEeecCCC-C-ccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           29 AGELRLHKDITELNL--PEACKISFPNGQD-----DLMNFEVSIKPDE-G-YYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        29 ~a~kRL~kE~~~l~~--~~g~~~~~~~~~~-----n~~~w~v~igp~~-t-pYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ....+...|+..|..  +..+...  ....     ....+.+.+.+.+ . .-..-.+.+.|.||++||..+|.|.+...
T Consensus        10 ~~~e~q~~EleaL~SIY~d~~~~~--~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~   87 (137)
T 1ukx_A           10 SYSQRQDHELQALEAIYGSDFQDL--RPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             CHHHHHHHHHHHHHHHTSSSEEEC--CCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHCcccceec--cCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEecC
Confidence            444567788877722  2223221  1111     1345666664432 1 00124688999999999999999988544

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=92.63  E-value=0.52  Score=38.23  Aligned_cols=82  Identities=12%  Similarity=0.306  Sum_probs=58.9

Q ss_pred             HHHHHHHhcCCCCCce-EEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHH
Q 030126           33 RLHKDITELNLPEACK-ISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHML  111 (182)
Q Consensus        33 RL~kE~~~l~~~~g~~-~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~  111 (182)
                      +|.+|+.++    |.. +..-  .+++...++.+-...    |....+.|.++.+||.++|.+...-|.           
T Consensus         5 ~li~Ei~~i----GW~~l~~i--d~~~~~i~l~~~D~~----gR~H~l~v~l~~~yp~~~P~~~~DlP~-----------   63 (186)
T 3zqs_A            5 SLIEEIGTL----GWDKLVYA--DTCFSTIKLKAEDAS----GREHLITLKLKAKYPAESPDYFVDFPV-----------   63 (186)
T ss_dssp             SHHHHHHHH----CGGGEEEE--CTTSSEEEEEEECTT----SCEEEEEEECCTTTTTSCCEEECCCSS-----------
T ss_pred             HHHHHHHHh----CCceeeee--cCCccEEEEEEEeCC----CCeEEEEEEECCCCCCCCCeeEEcCCC-----------
Confidence            578888877    221 1111  257888888884332    788999999999999999988776662           


Q ss_pred             HhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhc
Q 030126          112 LLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT  169 (182)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~  169 (182)
                                         .+               .-.|+|..++.+++...+..|.
T Consensus        64 -------------------~~---------------~~~w~~~ssL~~v~~qF~~~Le   87 (186)
T 3zqs_A           64 -------------------PF---------------CASWTPQSSLISIYSQFLAAIE   87 (186)
T ss_dssp             -------------------CC---------------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred             -------------------Cc---------------ccccCCCccHHHHHHHHHHHHH
Confidence                               11               1269999999999887777664

>1tt5_E Ubiquitin-conjugating enzyme E2 M; cell cycle, ligase; 2.60A {Homo sapiens}

Probab=92.28  E-value=0.069  Score=30.42  Aligned_cols=19  Identities=37%  Similarity=0.711  Sum_probs=15.5

Q ss_pred             CcchhhhhhhhhhhhhhCC
Q 030126            1 MIRLFKVKEKQKEDAENNT   19 (182)
Q Consensus         1 ~~~~~k~~~~~~~~~~~~~   19 (182)
                      ||++|.+|+++++++.+++
T Consensus         1 MIkLFSlK~kk~~e~~~~a   19 (26)
T 1tt5_E            1 MIKLFSLKQQKKEEESAGG   19 (26)
T ss_pred             CcchhhhhHHHHHhhcccc
Confidence            8999999999976666554

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.90  E-value=0.2  Score=37.01  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             cceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           58 LMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        58 ~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ...+.+.+.+.+..=..-.+.+.|.+|++||..+|.|.+.++
T Consensus        39 ~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   80 (128)
T 2ebk_A           39 GTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISINSE   80 (128)
T ss_dssp             CEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCCCS
T ss_pred             CCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEEhh
Confidence            457888884443110124789999999999999999987754

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=89.14  E-value=0.38  Score=36.72  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=22.1

Q ss_pred             EEEEEEEcCCCCCCCCCeeEEeec
Q 030126           76 TFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        76 ~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      .+.+.|.+|++||..||.+.+...
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            688999999999999999998876

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=86.48  E-value=0.64  Score=35.75  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             EEEEEEEcCCCCCCCCCeeEEeec
Q 030126           76 TFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        76 ~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      .+.+.|.+|.+||..+|.|...+.
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~~   99 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRSS   99 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEECS
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEeC
Confidence            899999999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	4e-22
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	1e-18
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-16
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	6e-15
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	9e-15
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-14
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-14
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-13
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	7e-13
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	1e-11
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-11
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	6e-11
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	1e-10
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-10
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	2e-10
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	3e-10
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	6e-10
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	9e-10
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	1e-09
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-09
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	1e-08
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	2e-08
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	3e-08
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	5e-08
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	1e-07
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	3e-07
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	5e-07
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	1e-05

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 4e-22
 Identities = 76/141 (53%), Positives = 91/141 (64%), Gaps = 32/141 (22%)

Query: 29  AGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYP 88
           A +LR+ KDI ELNLP+ C ISF +  DDL+NF++ I PDEG+Y++G FVFSF+V   YP
Sbjct: 3   AAQLRIQKDINELNLPKTCDISFSDP-DDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYP 61

Query: 89  HDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR 148
           HD PKVKC+T                                VYHPNIDLEGNVCLN+LR
Sbjct: 62  HDPPKVKCET-------------------------------MVYHPNIDLEGNVCLNILR 90

Query: 149 EDWKPVLNINTIIYGLYHLFT 169
           EDWKPVL IN+IIYGL +LF 
Sbjct: 91  EDWKPVLTINSIIYGLQYLFL 111

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 1e-18
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 32/140 (22%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL K++  L  + P    ++  + Q+ +  + V ++      Y+   F   F+    YP 
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
           D+P+V    +                                 HP++   G++CL++L E
Sbjct: 67  DSPQVMFTGEN-----------------------------IPVHPHVYSNGHICLSILTE 97

Query: 150 DWKPVLNINTIIYGLYHLFT 169
           DW P L++ ++   +  + +
Sbjct: 98  DWSPALSVQSVCLSIISMLS 117

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 2e-16
 Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 48/154 (31%)

Query: 32  LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYP 88
           L L + + EL  N  E       +  +DL  +EV I  P +  Y+ G F      P  YP
Sbjct: 2   LLLRRQLAELNKNPVEGFSAGLIDD-NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYP 60

Query: 89  HDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR 148
              PK+K  T+                               ++HPN+D  G+VC+++L 
Sbjct: 61  LRPPKMKFITE-------------------------------IWHPNVDKNGDVCISILH 89

Query: 149 -------------EDWKPVLNINTIIYGLYHLFT 169
                        E W P+  + TI+  +  +  
Sbjct: 90  EPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 123

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 66.4 bits (161), Expect = 6e-15
 Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++ +L  + P  C    P G D        + P E  YQ G F  +   P  YP  
Sbjct: 5   RIQKELQDLGRDPPAQCSA-GPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            PKV   T+                               +YHPNI+  G++CL++LR  
Sbjct: 64  PPKVAFTTR-------------------------------IYHPNINSNGSICLDILRSQ 92

Query: 151 WKPVLNINTIIYGLYHLFTVMLDHS 175
           W P L I+ ++  +  L        
Sbjct: 93  WSPALTISKVLLSICSLLCDPNPDD 117

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 9e-15
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 34/141 (24%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++ E+  + P  C    P G +        + P    Y+ G F       P YP  
Sbjct: 6   RIQKELAEITLDPPPNCSA-GPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 64

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            PKV  +T++                               YH NI+ +G +CL++L+++
Sbjct: 65  PPKVTFRTRI-------------------------------YHCNINSQGVICLDILKDN 93

Query: 151 WKPVLNINTIIYGLYHLFTVM 171
           W P L I+ ++  +  L T  
Sbjct: 94  WSPALTISKVLLSICSLLTDC 114

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 65.9 bits (160), Expect = 1e-14
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 48/154 (31%)

Query: 32  LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYP 88
           L L K + ++     +       +  +D+  +EV +  P +  Y+ G F    + P  YP
Sbjct: 3   LLLKKQLADMRRVPVDGFSAGLVDD-NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYP 61

Query: 89  HDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR 148
              PK+K  ++                               ++HPNID EGNVC+++L 
Sbjct: 62  QKPPKMKFISE-------------------------------IWHPNIDKEGNVCISILH 90

Query: 149 E-------------DWKPVLNINTIIYGLYHLFT 169
           +              W PV  + TI+  +  + T
Sbjct: 91  DPGDDKWGYERPEERWLPVHTVETILLSVISMLT 124

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 64.8 bits (157), Expect = 2e-14
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 34/139 (24%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           RL +D   +  + P       P   + ++   + I P +  Y++GTF    E    YP+ 
Sbjct: 7   RLMRDFKRMKEDAPPGVSA-SPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 65

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            P VK  ++                               ++HPN+   G +CL++L+  
Sbjct: 66  PPHVKFLSE-------------------------------MFHPNVYANGEICLDILQNR 94

Query: 151 WKPVLNINTIIYGLYHLFT 169
           W P  ++ +I+  +  LF 
Sbjct: 95  WTPTYDVASILTSIQSLFN 113

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 61.6 bits (149), Expect = 2e-13
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 31/138 (22%)

Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+ K++           +     +++  + V     +   Y N  +      P  YP   
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61

Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           P V    K                                 H ++   G++CL++L +D+
Sbjct: 62  PIVYFLQKPP------------------------------KHTHVYSNGDICLSLLGDDY 91

Query: 152 KPVLNINTIIYGLYHLFT 169
            P L+I+ ++  +  + +
Sbjct: 92  NPSLSISGLVLSIISMLS 109

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 60.9 bits (147), Expect = 7e-13
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 34/139 (24%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           RL +D  +L  + P       P   + L    +   P E  +++GTF  S E    YP+ 
Sbjct: 7   RLMRDFKKLQEDPPAGVSG-APTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 65

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            P VK  +K                               ++HPN+  +G++CL++L+  
Sbjct: 66  PPTVKFISK-------------------------------MFHPNVYADGSICLDILQNR 94

Query: 151 WKPVLNINTIIYGLYHLFT 169
           W P  ++  I+  +  L  
Sbjct: 95  WSPTYDVAAILTSIQSLLD 113

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 19/147 (12%), Positives = 36/147 (24%), Gaps = 25/147 (17%)

Query: 24  VKKQCAGELRLHKDITELNLPEACKISFPNG-QDDLMNFEVSIKPDEGYYQNGTFVFSFE 82
                   L     +     P     +  +G    L++   +I   E      +      
Sbjct: 24  TFHDSLALLDNFHSLR----PRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMW 79

Query: 83  VPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNV 142
           VP +YP   P +    +          +                         ID  G +
Sbjct: 80  VPSMYPVKPPFISINLENFDMNTISSSL--------------------PIQEYIDSNGWI 119

Query: 143 CLNVLREDWKPVLNINTIIYGLYHLFT 169
            L +L       +N+  ++  L  L  
Sbjct: 120 ALPILHCWDPAAMNLIMVVQELMSLLH 146

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 56.0 bits (134), Expect = 5e-11
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 36/141 (25%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+I  +  +      + F + + D+ + + +   P    Y+ G FV   EVP  YP 
Sbjct: 5   RIMKEIQAVKDDPAAHITLEFVS-ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNV-CLNVLR 148
             PK++  TK                               VYHPNI       CL++L+
Sbjct: 64  KPPKMQFDTK-------------------------------VYHPNISSVTGAICLDILK 92

Query: 149 EDWKPVLNINTIIYGLYHLFT 169
             W PV+ + + +  L  L  
Sbjct: 93  NAWSPVITLKSALISLQALLQ 113

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 6e-11
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 35/142 (24%)

Query: 31  ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYP 88
            +R+ K++ +L    P   +    +   +++ +   + PD+  Y    F      PP YP
Sbjct: 2   SMRVVKELEDLQKKPPPYLRN-LSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYP 60

Query: 89  HDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR 148
              P +K  TK                               +YHPN+D  G +CL ++ 
Sbjct: 61  FKPPMIKFTTK-------------------------------IYHPNVDENGQICLPIIS 89

Query: 149 EDW-KPVLNINTIIYGLYHLFT 169
            +  KP      ++  L  L  
Sbjct: 90  SENWKPCTKTCQVLEALNVLVN 111

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 33/144 (22%)

Query: 31  ELRLHKDITELN---LPEACKISFPNGQD-DLMNFEVSIK-PDEGYYQNGTFVFSFEVPP 85
             RL +++ E               + +D  L  +   I  P    Y+N  +    E  P
Sbjct: 7   NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGP 66

Query: 86  IYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLN 145
            YP   P V+  TK+++  +N                            +  +     ++
Sbjct: 67  KYPEAPPFVRFVTKINMNGVN---------------------------SSNGVVDPRAIS 99

Query: 146 VLREDWKPVLNINTIIYGLYHLFT 169
           VL   W+   +I  ++  L  L  
Sbjct: 100 VL-AKWQNSYSIKVVLQELRRLMM 122

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 55.1 bits (132), Expect = 1e-10
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 34/139 (24%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K+  +L  +         P+  +          P++  Y++G F     +P  YP +
Sbjct: 7   RIIKETEKLVSDPVPGITA-EPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
           APKV+  TK+                               YHPNID  G +CL+VL+ +
Sbjct: 66  APKVRFLTKI-------------------------------YHPNIDRLGRICLDVLKTN 94

Query: 151 WKPVLNINTIIYGLYHLFT 169
           W P L I T++  +  L  
Sbjct: 95  WSPALQIRTVLLSIQALLA 113

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 29/117 (24%)

Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEV--PPIYPHDAPKVKCKTKVDIFFLNFIHMLL 112
           D      +++       Y+  T+     +     YP++ P    K    +          
Sbjct: 44  DGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTI-------- 95

Query: 113 LFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
                                 ++D  G + L  L E   P  ++  +I  +  +F 
Sbjct: 96  ------------------KTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFG 134

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 3e-10
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 34/141 (24%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K+   L        K   P+  +      V   P +  ++ GTF     +P  YP  
Sbjct: 6   RIIKETQRLLAEPVPGIKA-EPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
           APKV+  TK+                               YHPN+D  G +CL++L++ 
Sbjct: 65  APKVRFMTKI-------------------------------YHPNVDKLGRICLDILKDK 93

Query: 151 WKPVLNINTIIYGLYHLFTVM 171
           W P L I T++  +  L +  
Sbjct: 94  WSPALQIRTVLLSIQALLSAP 114

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 6e-10
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 32/138 (23%)

Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           RL +++  L +     IS     D+L  +  +I       Y++  +  S E P  YP++A
Sbjct: 5   RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA 64

Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           P VK  T                                 YHPN+D +GN+ L++L+E W
Sbjct: 65  PTVKFLTP-------------------------------CYHPNVDTQGNISLDILKEKW 93

Query: 152 KPVLNINTIIYGLYHLFT 169
             + ++ TI+  +  L  
Sbjct: 94  SALYDVRTILLSIQSLLG 111

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 52.8 bits (126), Expect = 9e-10
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 34/139 (24%)

Query: 33  RLHKDITELNLPEACKIS-FPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
           RL +++  L +     I+ FP+G D+L  +  ++  P +  Y++  +  + E P  YP+ 
Sbjct: 13  RLQQELRTLLMSGDPGITAFPDG-DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            P VK  T                                 +HPN+D  GN+CL++L+E+
Sbjct: 72  PPVVKFTT-------------------------------PCWHPNVDQSGNICLDILKEN 100

Query: 151 WKPVLNINTIIYGLYHLFT 169
           W    ++ TI+  L  L  
Sbjct: 101 WTASYDVRTILLSLQSLLG 119

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 52.0 bits (124), Expect = 1e-09
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 36/145 (24%)

Query: 31  ELRLHKDITEL---NLPEACKISFPNGQD-DLMNFEVSIK-PDEGYYQNGTFVFSFEVPP 85
             RL +++ +      PE+C     +  D  +  +  +I  P    ++N  +  S +  P
Sbjct: 6   NFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGP 65

Query: 86  IYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLN 145
            YP   PKV   +K+++  +N                                 G V  +
Sbjct: 66  NYPDSPPKVTFISKINLPCVNPTT------------------------------GEVQTD 95

Query: 146 VLR-EDWKPVLNINTIIYGLYHLFT 169
                DWK    + T++  L     
Sbjct: 96  FHTLRDWKRAYTMETLLLDLRKEMA 120

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 52.1 bits (124), Expect = 2e-09
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 46/152 (30%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           RL K++ +L  + P        +  +  +   +   P +  Y +G F    E P  YP  
Sbjct: 7   RLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLS 66

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-- 148
            PK+     +                                HPNI   G VC+++L   
Sbjct: 67  PPKLTFTPSI-------------------------------LHPNIYPNGEVCISILHSP 95

Query: 149 -----------EDWKPVLNINTIIYGLYHLFT 169
                      E W PV ++  I+  +  + +
Sbjct: 96  GDDPNMYELAEERWSPVQSVEKILLSVMSMLS 127

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 31/138 (22%)

Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R H          +  +S      D+  +   I  P    Y+ G F     +PP YP++ 
Sbjct: 18  RAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP 77

Query: 92  PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
           PK+K  TK                                +       G +CL++L+ +W
Sbjct: 78  PKMKFVTK------------------------------IWHPNISSQTGAICLDILKHEW 107

Query: 152 KPVLNINTIIYGLYHLFT 169
            P L I T +  +  +  
Sbjct: 108 SPALTIRTALLSIQAMLA 125

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 39/144 (27%)

Query: 33  RLHKDITEL--NLPEACK---ISFPNGQDDLMNFEVSIKPDEG-YYQNGTFVFSFEVPPI 86
           RL ++      + P          P+G  +LMN+E +I   +G  ++ G F         
Sbjct: 6   RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 65

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNV 146
           YP   PK K +                                 ++HPN+   G V L++
Sbjct: 66  YPSSPPKCKFEPP-------------------------------LFHPNVYPSGTVSLSI 94

Query: 147 LRE--DWKPVLNINTIIYGLYHLF 168
           L E  DW+P + I  I+ G+  L 
Sbjct: 95  LEEDKDWRPAITIKQILLGIQELL 118

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 5e-08
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 36/140 (25%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPH 89
            ++K++T L  + P+  K+ FPN  +DL + +V+I+  EG  Y  G F     +   +P 
Sbjct: 10  LVYKEVTTLTADPPDGIKV-FPNE-EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 67

Query: 90  DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
             PK    TK+                               +HPN+   G +C+NVL+ 
Sbjct: 68  SPPKGYFLTKI-------------------------------FHPNVGANGEICVNVLKR 96

Query: 150 DWKPVLNINTIIYGLYHLFT 169
           DW   L I  ++  +  L  
Sbjct: 97  DWTAELGIRHVLLTIKCLLI 116

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 40/144 (27%)

Query: 33  RLHKDITEL-----NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           R+ ++  E+           K+   +  ++       I  P +  Y+ G +    ++P  
Sbjct: 8   RIKREFKEVLKSEETSKNQIKVDLVD--ENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 65

Query: 87  YPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-GNVCLN 145
           YP + PKV+  TK                               ++HPNI    G +CL+
Sbjct: 66  YPFNPPKVRFITK-------------------------------IWHPNISSVTGAICLD 94

Query: 146 VLREDWKPVLNINTIIYGLYHLFT 169
           +L++ W   + + T++  L  L  
Sbjct: 95  ILKDQWAAAMTLRTVLLSLQALLA 118

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 45.9 bits (108), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R   D   + L  + +  +P+  D +  F V  K P+   Y++GT++   ++P  YP  +
Sbjct: 4   RREMDY--MRLCNSTRKVYPS--DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS 59

Query: 92  PKVKCKTKVDIFFLNF 107
           P +    ++    ++ 
Sbjct: 60  PSIGFCNRILHPNVDE 75

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 5e-07
 Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 38/153 (24%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           RL +++  L    P      + +           +      Y+ G F     +P  YP +
Sbjct: 6   RLKRELHMLATEPPPGITC-WQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFE 64

Query: 91  APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
            P+++  T                                +YHPNID  G +CL+VL+  
Sbjct: 65  PPQIRFLTP-------------------------------IYHPNIDSAGRICLDVLKLP 93

Query: 151 ----WKPVLNINTIIYGLYHLFTVMLDHSIFFA 179
               W+P LNI T++  +  L +         A
Sbjct: 94  PKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMA 126

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 32  LRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
           L LH+D  +L       I+     +D+M +EV I+      +Q   F  +      Y + 
Sbjct: 7   LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 66

Query: 91  APKVKCKTKVDIFFLNF 107
            P VK  T      ++ 
Sbjct: 67  PPVVKFITIPFHPNVDP 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.97
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.97
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.77
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.66
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	96.06
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	94.04
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	91.11
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	89.38
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	87.52

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=1.1e-36  Score=240.62  Aligned_cols=123  Identities=28%  Similarity=0.551  Sum_probs=115.0

Q ss_pred             CccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           24 VKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      .+...++.|||++|+++|  +.++|+.+. |+ ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+ 
T Consensus         4 ~~~~~~~~kRl~kEl~~l~~~~~~gi~~~-p~-~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~-   80 (156)
T d2e2ca_           4 SKERHSVSKRLQQELRTLLMSGDPGITAF-PD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP-   80 (156)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-
T ss_pred             CcccchHHHHHHHHHHHHhHCCCCCEEEE-EC-CCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeecccc-
Confidence            344456789999999999  678899986 65 79999999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                    ++||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|+++||+++
T Consensus        81 ------------------------------i~Hpnv~~~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~  129 (156)
T d2e2ca_          81 ------------------------------CWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNA  129 (156)
T ss_dssp             ------------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCH
T ss_pred             ------------------------------CcCCCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhH
Confidence                                          9999999999999999999999999999999999999999999999875

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=236.19  Aligned_cols=119  Identities=28%  Similarity=0.685  Sum_probs=113.4

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +++.|||++|++++  +.+.|+++. +. ++|++.|++.| ||.+|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~-~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~-----   73 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAG-PK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTR-----   73 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-----
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEE-EC-CcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCC-----
Confidence            46889999999999  788999996 55 68999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                ++||||+.+|.||++++.+.|+|++|+.+||.+|+++|.+|++++|++.
T Consensus        74 --------------------------i~HPnv~~~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~  122 (148)
T d1y6la_          74 --------------------------IYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG  122 (148)
T ss_dssp             --------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSH
T ss_pred             --------------------------CcCceECCCCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccH
Confidence                                      9999999999999999999999999999999999999999999999874

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-37  Score=230.44  Aligned_cols=111  Identities=23%  Similarity=0.536  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +.|||++|++++  +.++|+.+.....++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+.      
T Consensus         4 ~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~------   77 (117)
T d2a7la1           4 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGEN------   77 (117)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSC------
T ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCC------
Confidence            459999999999  778899887544478999999999 99999999999999999999999999999999982      


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT  169 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~  169 (182)
                                             .+|||||+.+|.||+++|+++|+|++||++||++|++||+
T Consensus        78 -----------------------~~~Hpnv~~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          78 -----------------------IPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             -----------------------CCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             -----------------------ccccccCcCCCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence                                   1499999999999999999999999999999999999985

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=3.2e-36  Score=238.36  Aligned_cols=120  Identities=26%  Similarity=0.525  Sum_probs=112.3

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      .+|.|||++|+++|  +.++|+++. +.+++|++.|+++| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi~~~-p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-----   75 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGIVAG-PKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS-----   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEE-ESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-----
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEE-ECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecC-----
Confidence            57899999999999  778899887 55478999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcCC
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTVM  171 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~P  171 (182)
                                                +|||||+.+|.||+++|.             +.|+|+++|++||.+|+++|.+|
T Consensus        76 --------------------------i~HPnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p  129 (164)
T d2ucza_          76 --------------------------ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEP  129 (164)
T ss_dssp             --------------------------CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSC
T ss_pred             --------------------------ceeceEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCC
Confidence                                      999999999999999994             46999999999999999999999


Q ss_pred             CCCCcccc
Q 030126          172 LDHSIFFA  179 (182)
Q Consensus       172 ~~~sp~~~  179 (182)
                      +++||++.
T Consensus       130 ~~~~p~n~  137 (164)
T d2ucza_         130 NIESGANI  137 (164)
T ss_dssp             CGGGCCCH
T ss_pred             CCCCcccH
Confidence            99999873

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=3.2e-36  Score=235.25  Aligned_cols=119  Identities=29%  Similarity=0.613  Sum_probs=112.8

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +.|.|||++|++++  +.+.|+++. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi~~~-p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~-----   74 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGVSGA-PT-EDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISK-----   74 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-----
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEE-EC-CCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCc-----
Confidence            46789999999999  778899986 54 68999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.||+++|.+.|+|+++|.+||.+|+++|.+|+.++|++.
T Consensus        75 --------------------------i~HPnI~~~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~  123 (149)
T d1z3da1          75 --------------------------MFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANS  123 (149)
T ss_dssp             --------------------------CCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCH
T ss_pred             --------------------------ccceeEcCCCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhH
Confidence                                      9999999999999999999999999999999999999999999999874

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=6.3e-36  Score=236.44  Aligned_cols=121  Identities=63%  Similarity=1.102  Sum_probs=115.6

Q ss_pred             ccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           27 QCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +++|.+||++|+++|++++++.+.+++ ++|++.|++.|||++|+|+||.|++.|.||++||++||+|+|.++       
T Consensus         1 ~~~a~~Rl~kEl~~l~~~~~~~i~~~~-~~~l~~w~~~i~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~-------   72 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM-------   72 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSC-------
T ss_pred             CCHHHHHHHHHHHHhCCCCCCcEEEcC-CCcceEEEEEECCCCCCcCCCeEEEEEEecCCCCCCCceeeeccc-------
Confidence            368999999999999999999998765 799999999999999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+.+|.||++++.++|+|+++|++||.+|+++|.+|+++||++.
T Consensus        73 ------------------------i~HPnv~~~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~  121 (157)
T d1y8xa1          73 ------------------------VYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK  121 (157)
T ss_dssp             ------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCH
T ss_pred             ------------------------CCCccccccceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHH
Confidence                                    9999999999999999999999999999999999999999999999874

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=8.2e-36  Score=233.30  Aligned_cols=119  Identities=28%  Similarity=0.575  Sum_probs=112.5

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +++.+||++|++++  +.++|+.+. ++ ++|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|+     
T Consensus         1 m~~~~Rl~kE~~~l~~~~~~gi~~~-p~-~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~-----   73 (154)
T d1yh2a1           1 MQRASRLKRELHMLATEPPPGITCW-QD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP-----   73 (154)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-----
T ss_pred             CcHHHHHHHHHHHHHHCcCCCEEEE-EC-CcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCC-----
Confidence            46889999999999  788999886 55 69999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC----CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR----EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~----e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.||+++|.    +.|+|++++.+||.+|+++|.+|++++|++.
T Consensus        74 --------------------------i~HPnV~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~  126 (154)
T d1yh2a1          74 --------------------------IYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMA  126 (154)
T ss_dssp             --------------------------CCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             --------------------------CCcCCcCCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhH
Confidence                                      999999999999999996    5799999999999999999999999999875

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=6.8e-36  Score=233.27  Aligned_cols=119  Identities=28%  Similarity=0.579  Sum_probs=112.9

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +.|.|||++|+++|  +.+.|+.+. +. ++|++.|++.| ||.+|||+||+|++.|.||++||++||+|+|.|+     
T Consensus         2 t~A~kRl~~El~~l~~~~~~gi~~~-p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~-----   74 (153)
T d1ayza_           2 TPARRRLMRDFKRMKEDAPPGVSAS-PL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE-----   74 (153)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-----
T ss_pred             CHHHHHHHHHHHHHhHCCCCCEEEE-EC-CCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccC-----
Confidence            56889999999999  778899986 55 58999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                ++||||+.+|.||++++.+.|+|+++|.+||.+|++||.+|+.++|++.
T Consensus        75 --------------------------i~HPnI~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~  123 (153)
T d1ayza_          75 --------------------------MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANV  123 (153)
T ss_dssp             --------------------------CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSH
T ss_pred             --------------------------CCccCCCCCCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHH
Confidence                                      9999999999999999999999999999999999999999999999863

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=4.7e-36  Score=234.46  Aligned_cols=117  Identities=28%  Similarity=0.504  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +.|||++|+++|  +.+.|+++. +. ++|+++|++.| ||+||||+||+|++.|.||++||++||+|+|.|+       
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~-~~-~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-------   72 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAF-PE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP-------   72 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEE-EE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC-------
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEE-Ec-CCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCC-------
Confidence            679999999999  668899886 54 68999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+.+|.||++++.++|+|++||.+||.+|+++|.+|+++||++.
T Consensus        73 ------------------------i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~  121 (146)
T d1i7ka_          73 ------------------------CYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNT  121 (146)
T ss_dssp             ------------------------CCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ------------------------CCcccCCCCCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhH
Confidence                                    9999999999999999999999999999999999999999999999863

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=8e-36  Score=231.50  Aligned_cols=117  Identities=32%  Similarity=0.729  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      |.|||++|+++|  +++.|+++. +. ++|+..|++.| ||.+|||+||.|++.|.||++||++||+|+|.|+       
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~-~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~-------   72 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAG-PV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-------   72 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-------
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEE-EC-CCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecC-------
Confidence            689999999999  788899986 44 68999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                              ++||||+.+|.||++++.+.|+|++++.+||.+|+++|.+|++++|++.
T Consensus        73 ------------------------i~HPnV~~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~  121 (147)
T d1z2ua1          73 ------------------------IYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP  121 (147)
T ss_dssp             ------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ------------------------CceeeECCCCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccH
Confidence                                    9999999999999999999999999999999999999999999999874

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=1.4e-35  Score=232.96  Aligned_cols=118  Identities=33%  Similarity=0.644  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      ++.|||++|+++|  +.++||.+. +. ++|++.|++.| ||.+|||+||+|++.|.||++||++||+|+|.|+      
T Consensus         3 ~~~rRl~~E~~~l~~~~~~g~~~~-p~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~------   74 (152)
T d1jata_           3 SLPKRIIKETEKLVSDPVPGITAE-PH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK------   74 (152)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC------
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCC------
Confidence            4468999999999  788999987 55 68999999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.+|++++.++|+|+++|.+||.+|++||.+|+.++|++.
T Consensus        75 -------------------------i~HPnI~~~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~  123 (152)
T d1jata_          75 -------------------------IYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAN  123 (152)
T ss_dssp             -------------------------CCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCC
T ss_pred             -------------------------CCCCcCCCCCCeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccH
Confidence                                     9999999999999999999999999999999999999999999999875

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=3.5e-35  Score=229.10  Aligned_cols=119  Identities=29%  Similarity=0.585  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      ++.|||++|+++|  +.++|+++..++ ++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+      
T Consensus         1 s~~kRL~~El~~l~~~~~~gi~~~~~~-~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~------   73 (149)
T d1fzya_           1 SRAKRIMKEIQAVKDDPAAHITLEFVS-ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK------   73 (149)
T ss_dssp             CHHHHHHHHHHHHHTCGGGCEEEEESC-SSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC------
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEECC-CCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCC------
Confidence            3679999999999  667899987554 68999999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               ++||||+. +|.+|++++.+.|+|++||.+||.+|+++|.+|+++||++.
T Consensus        74 -------------------------i~HpnI~~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~  123 (149)
T d1fzya_          74 -------------------------VYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA  123 (149)
T ss_dssp             -------------------------CCBTTBCTTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSH
T ss_pred             -------------------------CcCCcccCCcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHH
Confidence                                     99999998 88999999999999999999999999999999999999874

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=5.8e-35  Score=222.55  Aligned_cols=108  Identities=32%  Similarity=0.667  Sum_probs=101.2

Q ss_pred             HHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHH
Q 030126           32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFI  108 (182)
Q Consensus        32 kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~  108 (182)
                      .||+||++++  +.++|+.+...+ ++|+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+         
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~-~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~---------   71 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLID-DNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE---------   71 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESS-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC---------
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCC-CCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCC---------
Confidence            6999999999  778999887433 67999999999 9999999999999999999999999999999999         


Q ss_pred             HHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcCC
Q 030126          109 HMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTVM  171 (182)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~P  171 (182)
                                            ++||||+.+|.||+++|.             ++|+|++|+++||++|++||.+|
T Consensus        72 ----------------------i~Hpni~~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          72 ----------------------IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             ----------------------CCCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             ----------------------CCccccCCCCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence                                  999999999999999984             67999999999999999999987

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=7.1e-35  Score=227.81  Aligned_cols=116  Identities=31%  Similarity=0.626  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhH
Q 030126           31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNF  107 (182)
Q Consensus        31 ~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~  107 (182)
                      .|||++|+++|  +.+.|+.+. +. ++|+++|++.| ||.+|||+||+|++.|.||++||++||+|+|.|+        
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~-p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--------   73 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAE-PD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK--------   73 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC--------
T ss_pred             cHHHHHHHHHHHhCCCCCEEEE-EC-CCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCC--------
Confidence            38999999999  667899886 55 68999999999 9999999999999999999999999999999999        


Q ss_pred             HHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                             ++||||+.+|.||++++.+.|+|++++.+||.+|++||.+|++++|++.
T Consensus        74 -----------------------i~HPni~~~G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~  122 (149)
T d1j7db_          74 -----------------------IYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN  122 (149)
T ss_dssp             -----------------------CCBTTBCTTCBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCC
T ss_pred             -----------------------CCCceECCCCcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhH
Confidence                                   9999999999999999999999999999999999999999999999874

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=230.48  Aligned_cols=121  Identities=28%  Similarity=0.507  Sum_probs=114.0

Q ss_pred             cccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           26 KQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      ....+.|||++|++++  +.++|+.+. ++ ++|+.+|++.| ||++|||+||.|++.|.||++||++||+|+|.|+   
T Consensus         3 ~~~~~~kRl~kEl~~l~~~~~~gi~v~-p~-~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---   77 (151)
T d1zdna1           3 LPPHIIRLVYKEVTTLTADPPDGIKVF-PN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTK---   77 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC---
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEE-Ec-CcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCC---
Confidence            3457789999999999  778899885 66 68999999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                  +|||||+.+|.+|++++.++|+|+++|.+||.+|+++|.+|+.++|++.
T Consensus        78 ----------------------------i~HPnI~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~  126 (151)
T d1zdna1          78 ----------------------------IFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNE  126 (151)
T ss_dssp             ----------------------------CCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSH
T ss_pred             ----------------------------CCCceecCCCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhH
Confidence                                        9999999999999999999999999999999999999999999999874

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=7.3e-35  Score=227.50  Aligned_cols=118  Identities=25%  Similarity=0.531  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhH
Q 030126           30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNF  107 (182)
Q Consensus        30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~  107 (182)
                      |++||++|+++|  +.++|+.+. +.+++|+..|++.+||++|||+||+|++.|.||++||++||+|+|.|+        
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~-~~~~~~~~~w~~iigp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--------   71 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNL-SSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTK--------   71 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEE-EECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSC--------
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEE-ecCCCceEEEEEEECCCCCCccCceeeEEEecCcCCccCCceeeccCC--------
Confidence            579999999999  778899886 444679999999889999999999999999999999999999999999        


Q ss_pred             HHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                             ++||||+.+|.||+++|. ++|+|++|+.+||.+|+++|.+|+.++|++.
T Consensus        72 -----------------------i~HpnI~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~  121 (150)
T d1wzva1          72 -----------------------IYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRM  121 (150)
T ss_dssp             -----------------------CCBTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSH
T ss_pred             -----------------------CCcceECCCCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHH
Confidence                                   999999999999999995 6899999999999999999999999999864

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=2e-34  Score=215.55  Aligned_cols=105  Identities=22%  Similarity=0.508  Sum_probs=99.1

Q ss_pred             HHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHH
Q 030126           33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIH  109 (182)
Q Consensus        33 RL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~  109 (182)
                      ||+||++++  +.+.|+.+. ++ ++|+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+.         
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~-~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~---------   70 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLD-VH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKP---------   70 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSC---------
T ss_pred             HHHHHHHHHHhCCCCCEEEE-Ec-CCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEecc---------
Confidence            899999999  778899886 44 68999999999 99999999999999999999999999999999983         


Q ss_pred             HHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhc
Q 030126          110 MLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT  169 (182)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~  169 (182)
                                           ++||||+.+|.||+++|.++|+|++|+++||++|++||+
T Consensus        71 ---------------------~~hpni~~~G~iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          71 ---------------------PKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             ---------------------CCBTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             ---------------------ccCceECCCCeEEeecccCCCCccCCHHHHHHHHHHHhC
Confidence                                 589999999999999999999999999999999999985

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=8.8e-35  Score=228.04  Aligned_cols=120  Identities=25%  Similarity=0.434  Sum_probs=112.1

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      ...|.+||+||++++  +.+.|+.+. +. ++|++.|++.| ||.+|||+||.|+++|.||++||.+||+|+|.|+    
T Consensus         2 ~~~a~~~L~kE~~~l~~~~~~gi~v~-p~-~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~----   75 (148)
T d1yrva1           2 HGRAYLLLHRDFCDLKENNYKGITAK-PV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI----   75 (148)
T ss_dssp             GCHHHHHHHHHHHHHHHHCCTTEEEE-EC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC----
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEE-EC-CCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccc----
Confidence            457889999999999  778899886 55 68999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCC--CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~--e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                 ++||||+. +|.||+++|.  ++|+|++||++||.+|+++|.+|+.++|++.
T Consensus        76 ---------------------------i~HpnV~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~  127 (148)
T d1yrva1          76 ---------------------------PFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNL  127 (148)
T ss_dssp             ---------------------------CCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCH
T ss_pred             ---------------------------cccCceecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhH
Confidence                                       99999995 8999999994  6899999999999999999999999999875

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=2.1e-34  Score=227.41  Aligned_cols=117  Identities=30%  Similarity=0.575  Sum_probs=108.8

Q ss_pred             HHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhH
Q 030126           31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNF  107 (182)
Q Consensus        31 ~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~  107 (182)
                      ..||+||+++|  ++++|+.+.. .+++|++.|+++| ||++|||+||+|++.|.||++||++||+|+|.|+        
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~-~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~--------   72 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGL-VDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISE--------   72 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEE-SSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSC--------
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEE-CCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCC--------
Confidence            58999999999  7789999974 4357899999999 9999999999999999999999999999999999        


Q ss_pred             HHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcCCCCC
Q 030126          108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTVMLDH  174 (182)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~P~~~  174 (182)
                                             +|||||+.+|.||+++|.             ++|+|+++|.+||.+|+++|.+|+++
T Consensus        73 -----------------------i~HPnI~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~  129 (161)
T d1pzva_          73 -----------------------IWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFE  129 (161)
T ss_dssp             -----------------------CCCTTBCTTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCS
T ss_pred             -----------------------CCCcccCCCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCC
Confidence                                   999999999999999994             35999999999999999999999999


Q ss_pred             Ccccc
Q 030126          175 SIFFA  179 (182)
Q Consensus       175 sp~~~  179 (182)
                      +|++.
T Consensus       130 ~p~n~  134 (161)
T d1pzva_         130 SPANV  134 (161)
T ss_dssp             SCSCH
T ss_pred             CccCH
Confidence            99864

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-34  Score=225.76  Aligned_cols=120  Identities=23%  Similarity=0.534  Sum_probs=110.7

Q ss_pred             ccHHHHHHHHHHHhcC-----CCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           27 QCAGELRLHKDITELN-----LPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l~-----~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      +..+.+||++|++++.     ...|+.+. +. ++|+++|++.| ||++|||+||+|++.|.||++||++||+|+|.|+ 
T Consensus         2 s~~a~~Rl~kE~~~l~~~~~~~~~~i~~~-~~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-   78 (154)
T d2bepa1           2 ANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK-   78 (154)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-
T ss_pred             chHHHHHHHHHHHHHHHCCCCCCCcEEEE-cC-CCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceeccc-
Confidence            5678999999999982     25678876 33 58999999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                    ++||||+. +|.+|++++.+.|+|++||.+||.+|+++|.+|++++|++.
T Consensus        79 ------------------------------i~Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~  128 (154)
T d2bepa1          79 ------------------------------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA  128 (154)
T ss_dssp             ------------------------------CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ------------------------------CCCCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHH
Confidence                                          99999997 89999999999999999999999999999999999999863

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=223.21  Aligned_cols=116  Identities=33%  Similarity=0.576  Sum_probs=108.0

Q ss_pred             HHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHH
Q 030126           32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIH  109 (182)
Q Consensus        32 kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~  109 (182)
                      |||++|++++  +.+.|+.+. +.+++|++.|++.|||++|||+||+|++.|.||++||++||+|+|.|+          
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~-~~~~~n~~~w~~~igp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~----------   70 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNI-QVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTK----------   70 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEE-CSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSC----------
T ss_pred             HHHHHHHHHHHhCCCCCeEEE-ECCCCcceEEEEEECCCCcCccCCEEEEEEEecCcccCCCceeeccCC----------
Confidence            8999999999  457788775 544789999999999999999999999999999999999999999999          


Q ss_pred             HHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          110 MLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                           ++||||+.+|.||+++|. +.|+|++++.+||.+|++||.+|+.++|++.
T Consensus        71 ---------------------i~HPnV~~~G~icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~  120 (144)
T d1c4zd_          71 ---------------------IYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA  120 (144)
T ss_dssp             ---------------------CCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCH
T ss_pred             ---------------------CCCcCCccCCccccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccH
Confidence                                 999999999999999997 5699999999999999999999999999864

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=8.2e-34  Score=223.84  Aligned_cols=120  Identities=27%  Similarity=0.466  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEc---cCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           29 AGELRLHKDITEL--NLPEACKISF---PNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~---~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      -|.+||++|++++  +.+.|+.+..   +++.+|+++|++.| ||.||||+||.|++.|.||++||++||+|+|.|+   
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~---   78 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP---   78 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC---
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccc---
Confidence            4789999999999  7788998752   22234999999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC--CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~--e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                  ++||||+.+|.+|+++|.  ++|+|++||.+||.+|+++|.+|++++|++.
T Consensus        79 ----------------------------i~HPnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~  129 (156)
T d2uyza1          79 ----------------------------LFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQA  129 (156)
T ss_dssp             ----------------------------CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ----------------------------cccccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCH
Confidence                                        999999999999999995  5799999999999999999999999999874

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=1.8e-33  Score=223.26  Aligned_cols=117  Identities=27%  Similarity=0.561  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHhc---------------CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCe
Q 030126           30 GELRLHKDITEL---------------NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPK   93 (182)
Q Consensus        30 a~kRL~kE~~~l---------------~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~   93 (182)
                      .++||+||+++|               ..+.|+.+...  ++|+++|++.| ||.+|||+||.|++.|.||++||++||+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~   79 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV--GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPK   79 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEE--TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEec--CCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcE
Confidence            478999999988               22357777633  48999999999 9999999999999999999999999999


Q ss_pred             eEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCC
Q 030126           94 VKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVML  172 (182)
Q Consensus        94 v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~  172 (182)
                      |+|.|+                               ++||||+. +|.||++++.+.|+|+++|.+||.+|+++|.+|+
T Consensus        80 V~F~t~-------------------------------i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~  128 (161)
T d2f4za1          80 MKFVTK-------------------------------IWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPV  128 (161)
T ss_dssp             EEESSC-------------------------------CCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCC
T ss_pred             EEecCC-------------------------------CCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCC
Confidence            999999                               99999966 8999999999999999999999999999999999


Q ss_pred             CCCcccc
Q 030126          173 DHSIFFA  179 (182)
Q Consensus       173 ~~sp~~~  179 (182)
                      +++|++.
T Consensus       129 ~~dp~n~  135 (161)
T d2f4za1         129 PTDPQDA  135 (161)
T ss_dssp             TTSCSCH
T ss_pred             CCCchhH
Confidence            9999875

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.97  E-value=6.2e-32  Score=210.05  Aligned_cols=121  Identities=18%  Similarity=0.259  Sum_probs=103.6

Q ss_pred             cHHHHHHHHHHHhcC--CCCCceEEc--cCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           28 CAGELRLHKDITELN--LPEACKISF--PNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        28 ~~a~kRL~kE~~~l~--~~~g~~~~~--~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      ..+.+||+||+++++  .++|+....  ..+++|+++|++.| ||.+|||+||.|++.|.||++||++||+|+|.|+   
T Consensus         4 ~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~---   80 (139)
T d2a4da1           4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK---   80 (139)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC---
T ss_pred             cchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecC---
Confidence            357899999999993  456654432  22244799999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCC--CCccccCcHHHHHHHHHHhhcCC-CCCCccc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTVM-LDHSIFF  178 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~--e~W~p~~ti~siL~sI~~lL~~P-~~~sp~~  178 (182)
                                                  ++||||+. +|.+|++.+.  ++|+|++||++||.+|+++|.+| |+++|.+
T Consensus        81 ----------------------------i~HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~  132 (139)
T d2a4da1          81 ----------------------------INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQP  132 (139)
T ss_dssp             ----------------------------CCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCC
T ss_pred             ----------------------------cccccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCC
Confidence                                        99999987 6888777663  57999999999999999999997 7778876


Q ss_pred             c
Q 030126          179 A  179 (182)
Q Consensus       179 ~  179 (182)
                      .
T Consensus       133 ~  133 (139)
T d2a4da1         133 P  133 (139)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.97  E-value=3.3e-32  Score=211.33  Aligned_cols=117  Identities=21%  Similarity=0.435  Sum_probs=101.8

Q ss_pred             cHHHHHHHHHHHhcCC---CCCceEEccC-CCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           28 CAGELRLHKDITELNL---PEACKISFPN-GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        28 ~~a~kRL~kE~~~l~~---~~g~~~~~~~-~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      ..+++||+||++++++   +.++++.... +..|+++|++.| ||++|+|+||.|++.|.||++||++||+|+|.|+   
T Consensus         3 ~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~---   79 (136)
T d1jatb_           3 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK---   79 (136)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC---
T ss_pred             CchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEecc---
Confidence            3578999999999944   5567665443 223599999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCC-CCccccCcHHHHHHHHHHhhcCCCCCC
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTVMLDHS  175 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~-e~W~p~~ti~siL~sI~~lL~~P~~~s  175 (182)
                                                  ++||||+. +|.||++++. ++|+|++||++||.+|+++|.+|+...
T Consensus        80 ----------------------------i~HpnV~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~  126 (136)
T d1jatb_          80 ----------------------------INLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKK  126 (136)
T ss_dssp             ----------------------------CCCTTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHT
T ss_pred             ----------------------------ccccccccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCC
Confidence                                        99999996 6999999885 789999999999999999999987544

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=210.59  Aligned_cols=117  Identities=15%  Similarity=0.240  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      +|.|||++|++++  +.++|+++. +. ++|+++|++.| ||.+|||+||.|++.|.||++||++||+|+|.|+      
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~-p~-~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~------   72 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAE-PL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP------   72 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC------
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEE-Ec-CcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCC------
Confidence            4789999999999  778899887 55 68999999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCce-ecccCCCCccccCcHHHHHHHHHHhhcCCCCCCccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNV-CLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFF  178 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~i-Cl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~  178 (182)
                                               ++|+|++..|.+ |++++.++|+|++||++||++|++||.+|++++...
T Consensus        73 -------------------------~~~~~~~g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~  121 (157)
T d2f4wa1          73 -------------------------NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSI  121 (157)
T ss_dssp             -------------------------CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBC
T ss_pred             -------------------------CcccCCCCCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCc
Confidence                                     788877654333 334556889999999999999999999999876543

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.97  E-value=1.9e-31  Score=211.10  Aligned_cols=114  Identities=26%  Similarity=0.552  Sum_probs=102.2

Q ss_pred             HHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHH
Q 030126           31 ELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIH  109 (182)
Q Consensus        31 ~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~  109 (182)
                      .|||++|+++|...+ ..+ .+.  ||+++|+|.| ||++|||+||.|++.|.||++||.+||+|+|.|+          
T Consensus         2 ~rr~~~e~~~l~~~~-~~~-~~~--d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~----------   67 (158)
T d1yf9a1           2 NRRREMDYMRLCNST-RKV-YPS--DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR----------   67 (158)
T ss_dssp             CHHHHHHHHHHHSSS-SCE-EEC--SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC----------
T ss_pred             chHHHHHHHHHhcCC-CcC-CCC--CCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCC----------
Confidence            489999999994332 223 343  7999999999 9999999999999999999999999999999999          


Q ss_pred             HHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHH-HHHhhcCCCCCCcccc
Q 030126          110 MLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTVMLDHSIFFA  179 (182)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~s-I~~lL~~P~~~sp~~~  179 (182)
                                           ++||||+. +|.||+++|.++|+|.+++.++|.. |+.||.+|+.++|++.
T Consensus        68 ---------------------i~HPnI~~~~G~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~  118 (158)
T d1yf9a1          68 ---------------------ILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNV  118 (158)
T ss_dssp             ---------------------CCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCH
T ss_pred             ---------------------CCCCCCccCcccccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhH
Confidence                                 99999987 8999999999999999999999965 7789999999999864

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-31  Score=208.90  Aligned_cols=117  Identities=16%  Similarity=0.297  Sum_probs=100.1

Q ss_pred             ccHHHHHHHHHHHhcCCC----CCceEEccCCCCCcceeEEee-c-CCCCccCCcE-----------EEEEEEcCCCCCC
Q 030126           27 QCAGELRLHKDITELNLP----EACKISFPNGQDDLMNFEVSI-K-PDEGYYQNGT-----------FVFSFEVPPIYPH   89 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l~~~----~g~~~~~~~~~~n~~~w~v~i-g-p~~tpYegg~-----------f~~~i~fp~~YP~   89 (182)
                      +..|.+||+||++++.+.    .|+... +..+||+++|++.| | |++|||+||.           |++.|.||++||+
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v-~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~   80 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSV-ELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF   80 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEE-EEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEe-ecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhh
Confidence            457899999999999432    344332 23367999999999 7 7899999986           9999999999999


Q ss_pred             CCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcc-cCCCceecccCC-CCccccCcHHHHHHHHHHh
Q 030126           90 DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNI-DLEGNVCLNVLR-EDWKPVLNINTIIYGLYHL  167 (182)
Q Consensus        90 ~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI-~~~G~iCl~~L~-e~W~p~~ti~siL~sI~~l  167 (182)
                      +||+|+|.|+                               ++|||+ +.+|.||+++|. ++|+|++||++||.+|+++
T Consensus        81 ~PP~v~f~t~-------------------------------i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~l  129 (162)
T d1zuoa1          81 DPPFVRVVLP-------------------------------VLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINAT  129 (162)
T ss_dssp             SCCEEEEEES-------------------------------CEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHH
T ss_pred             hcceEEEEEE-------------------------------eeccccccCCceeecccccCCCCCCcccHHHHHHHHHHH
Confidence            9999999999                               999985 669999999995 5699999999999999999


Q ss_pred             hcCCCCCC
Q 030126          168 FTVMLDHS  175 (182)
Q Consensus       168 L~~P~~~s  175 (182)
                      |.+|++..
T Consensus       130 l~~~~p~~  137 (162)
T d1zuoa1         130 LVKGKARV  137 (162)
T ss_dssp             HHHTTCEE
T ss_pred             HcCCCCCC
Confidence            99877643

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2e-19  Score=138.88  Aligned_cols=91  Identities=18%  Similarity=0.166  Sum_probs=78.4

Q ss_pred             CCCcceeEEee-cCCCCccCCcEEEE--EEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCcccc
Q 030126           55 QDDLMNFEVSI-KPDEGYYQNGTFVF--SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV  131 (182)
Q Consensus        55 ~~n~~~w~v~i-gp~~tpYegg~f~~--~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  131 (182)
                      +|+..+|.+.| |+.+++|+||+|.+  .|-||++||.+||.|.|.+.                          .+....
T Consensus        43 ~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt--------------------------~~~~~~   96 (141)
T d1s1qa_          43 NDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPT--------------------------SSMTIK   96 (141)
T ss_dssp             TTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCC--------------------------TTCEEC
T ss_pred             CCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecC--------------------------CCcccc
Confidence            57889999999 99999999999999  55589999999999988654                          122337


Q ss_pred             ccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCC
Q 030126          132 YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVM  171 (182)
Q Consensus       132 ~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P  171 (182)
                      +||||+.+|+||++.|.+.|.+..++.+++..|+.+|++.
T Consensus        97 ~h~~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~e  136 (141)
T d1s1qa_          97 TGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE  136 (141)
T ss_dssp             CSSSBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHS
T ss_pred             CCCeECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCCC
Confidence            8999999999999999865567789999999999999973

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=7.3e-17  Score=125.94  Aligned_cols=100  Identities=17%  Similarity=0.124  Sum_probs=76.1

Q ss_pred             CCCcceeEEee-cCCCCccCCcE---EEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccc
Q 030126           55 QDDLMNFEVSI-KPDEGYYQNGT---FVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQ  130 (182)
Q Consensus        55 ~~n~~~w~v~i-gp~~tpYegg~---f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (182)
                      +|....+-+.+ |.-..+|+|++   +.+.|-||++||+.||.+.|.+..                    .+..+.+...
T Consensus        48 ~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~--------------------~~~~~~~~~i  107 (152)
T d1uzxa_          48 SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLEN--------------------FDMNTISSSL  107 (152)
T ss_dssp             TTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTT--------------------CCSCC----C
T ss_pred             CCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCc--------------------ccccCCCccc
Confidence            35667777888 99999999996   677888999999999999998762                    0001122233


Q ss_pred             cccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCC
Q 030126          131 VYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDH  174 (182)
Q Consensus       131 i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~  174 (182)
                      ++||||+.+|+||++.|.+.|.|..++.+++.+|+.+|.+|+++
T Consensus       108 ~~hp~Vd~~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         108 PIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             GGGGGBCTTSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             ccCCCCCCCCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCCC
Confidence            78999999999999999887889999999999999999998654

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0011  Score=50.39  Aligned_cols=100  Identities=16%  Similarity=0.311  Sum_probs=55.6

Q ss_pred             ccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEeecCCCCccCCc----------EEEEEEEcCCCCCCCCCeeEE
Q 030126           27 QCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNG----------TFVFSFEVPPIYPHDAPKVKC   96 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg----------~f~~~i~fp~~YP~~pP~v~f   96 (182)
                      ......||..||..|  ...+...... .+|.+  .+.--+.+|-|.|-          .|.+++.+|..||..||.|..
T Consensus        23 ~e~W~~RLKEEy~aL--I~Yv~nNK~~-dndWF--~lesn~~GT~W~GkCWyihnl~kYeFd~eFdIP~tYP~t~pEi~l   97 (162)
T d2in1a1          23 RELWVQRLKEEYQSL--IRYVENNKNA-DNDWF--RLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAV   97 (162)
T ss_dssp             HHHHHHHHHHHHHHH--HHHHHHHHHT-TCCCE--EEEECTTSSEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHH--HHHHHhcccc-cCCeE--EeccCCCCCeeeceeeEEEeeeEEEEEEEeccCCCCCCCCcceec
Confidence            345789999999988  0000000001 01111  11114445555443          356778899999999999864


Q ss_pred             eeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCc---cccCcHHHHH
Q 030126           97 KTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDW---KPVLNINTII  161 (182)
Q Consensus        97 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W---~p~~ti~siL  161 (182)
                      -.-.                          |.    ..-.|..|.|||+... .-|   .|.+.|...+
T Consensus        98 PeLd--------------------------GK----TaKMYRGGkIClt~HFkPLWarN~PkfGIaHal  136 (162)
T d2in1a1          98 PELD--------------------------GK----TAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             GGGS--------------------------SS----CSSSCGGGBCCCCTTSHHHHHTTTTSCCHHHHH
T ss_pred             cccC--------------------------Cc----hhhhhcCceeeccccchhhhhhcCCchhHHHHH
Confidence            3221                          11    1223448999998774 225   5666766554

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.15  Score=35.12  Aligned_cols=25  Identities=28%  Similarity=0.727  Sum_probs=22.3

Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           75 GTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        75 g~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ....+.+.+|++||..+|.+.+...
T Consensus        52 ~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1          52 VCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             eEEEEEEEcCCCCCCCCCcEEeecc
Confidence            5688999999999999999998776

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.11  E-value=0.83  Score=32.08  Aligned_cols=39  Identities=21%  Similarity=0.428  Sum_probs=28.6

Q ss_pred             eEEeecCC--CCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           61 FEVSIKPD--EGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        61 w~v~igp~--~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ..+.+.+.  +.......+.+.|.||++||..+|.+.+...
T Consensus        47 ~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~   87 (137)
T d1ukxa_          47 INLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             EEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             EEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecC
Confidence            34455332  3344556799999999999999999988765

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.17  Score=35.51  Aligned_cols=28  Identities=18%  Similarity=0.365  Sum_probs=23.9

Q ss_pred             cCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           72 YQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        72 Yegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      .......+.+.+|.+||..+|.|.+.+.
T Consensus        63 ~~~~~l~L~~~lP~~YP~~~P~i~l~~~   90 (140)
T d2daxa1          63 EKMAMFSLACILPFKYPAVLPEITVRSV   90 (140)
T ss_dssp             TCEEEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             ccCceEEEEEEecCcCCCcCCceeccCC
Confidence            3445788999999999999999988776

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=0.48  Score=33.28  Aligned_cols=25  Identities=16%  Similarity=0.202  Sum_probs=21.6

Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           75 GTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        75 g~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      -...+.+.+|++||..+|.|.+.++
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~~   92 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRSS   92 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEECS
T ss_pred             ceEEEEEEeCCCCCCCCCCceeecc
Confidence            3578889999999999999988765