Citrus Sinensis ID: 030167

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MKMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRSSMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Secondary Structure (PSIPRED)
cccccccccccEEEEEEcccccccccccccccccccccccccccEEEcccccccEEEEEEEEEEEEEEccccHHHHHHcccccccccccHHHHEEccccEEEEEEEEEEEEccccccccccEEccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcEEcEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEEcccccccccccEEEEccccccccccccEEEEcccccccEEEEEEccccEEEHHcccHHHHHHccccccEEEEcccEEEEcccccEEEEEEEEEEEcccccccccEEEcccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEc
Coil and Loop (DISEMBL)
mkmalncssstcitfsynkirnptntssltlntgffhlaqkspfrvsaatspAKARFVARRKESVRVRQLQRPlieymslpasqysvldaeriervddntfrsSMINriscdsnssnsevqQLTSDAFIEVSIevpfafrafpveaieSTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Flexible Loop (DISEMBL)
mkmalncssstCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKarfvarrkesvrvrqlqrplieymslpasqysvldaERIERVDDNTFRSSMINriscdsnssnSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Low Complexity Region (SEG)
MKMALNCSSSTCITFSYNKIRNPtntssltlntGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRSSMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Disordered region (IsUnstruct)
*********STCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPF********************VRVRQLQRPLIEYMSLPASQYSVLDAERIERV***************************TSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIE**
Disordered Region (DISOPRED)
*********S****F*Y*******************************************************PLIEYMSLPASQYSVLDAERIERVDDNTFRSSMINRISC***********LTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Disordered Region (DISEMBL)
********SSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSP************************RQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRSSMINRISC**********QLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Disordered Region (DISPRO)
*KMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRSSMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRSSMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
7406448	285	putative protein [Arabidopsis thaliana]	0.708	0.452	0.563	1e-45
30680516	255	uncharacterized protein [Arabidopsis tha	0.708	0.505	0.558	3e-45
255583732	245	conserved hypothetical protein [Ricinus	0.934	0.693	0.48	4e-44
297806421	252	hypothetical protein ARALYDRAFT_487226 [	0.884	0.638	0.479	5e-44
225448890	239	PREDICTED: uncharacterized protein SYNPC	0.747	0.569	0.531	8e-44
388515479	226	unknown [Medicago truncatula]	0.802	0.646	0.512	2e-41
356500349	228	PREDICTED: uncharacterized protein LOC10	0.741	0.592	0.526	2e-40
356534738	231	PREDICTED: uncharacterized protein LOC10	0.692	0.545	0.519	1e-39
357439939	227	(RAP Annotation release2) Galactose-bind	0.741	0.594	0.515	2e-39
449493277	242	PREDICTED: uncharacterized protein SYNPC	0.824	0.619	0.473	3e-37

>gi|7406448|emb|CAB85550.1| putative protein [Arabidopsis thaliana]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/181 (56%), Positives = 117/181 (64%), Gaps = 52/181 (28%)

Query: 43  PFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 102
           P RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR
Sbjct: 56  PIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 114

Query: 103 ---------------------------------------------------SSMINRISC 111
                                                              +SM+NR+SC
Sbjct: 115 CYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSC 174

Query: 112 DSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVS 171
           DS    S  QQ+TSDA IEV+IE+PFAFR FPV AIE+TGTQVLDQILKLMLPRF+SQV 
Sbjct: 175 DSTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQVC 234

Query: 172 R 172
           R
Sbjct: 235 R 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680516|ref|NP_196064.2| uncharacterized protein [Arabidopsis thaliana] gi|63147366|gb|AAY34156.1| At5g04440 [Arabidopsis thaliana] gi|87116598|gb|ABD19663.1| At5g04440 [Arabidopsis thaliana] gi|332003362|gb|AED90745.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/181 (55%), Positives = 118/181 (65%), Gaps = 52/181 (28%)

Query: 43  PFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 102
           P RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR
Sbjct: 56  PIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 114

Query: 103 ---------------------------------------------------SSMINRISC 111
                                                              +SM+NR+SC
Sbjct: 115 CYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSC 174

Query: 112 DSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVS 171
           DS    S  QQ+TSDA IEV+IE+PFAFR FPV AIE+TGTQVLDQILKLMLPRF+SQ+S
Sbjct: 175 DSTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQLS 234

Query: 172 R 172
           +
Sbjct: 235 K 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583732|ref|XP_002532619.1| conserved hypothetical protein [Ricinus communis] gi|223527639|gb|EEF29750.1| conserved hypothetical protein [Ricinus communis]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 135/225 (60%), Gaps = 55/225 (24%)

Query: 3   MALNCSSSTCITFSYNKIRNPTNTS---SLTLNTGFFHLAQKSPF-RVSAATSPAKARFV 58
           MA+NCS+ +  T S + +R  + +    SL  N+     + + PF R+ +A +  KARF+
Sbjct: 1   MAINCSTCSNSTVSLSSVRLESRSPRIFSLNFNSSQNGSSPRKPFLRIVSANATPKARFI 60

Query: 59  ARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR---------------- 102
           ARRKESV VRQL RPLIEYMSLPASQYSVLDAERIER+DDNTFR                
Sbjct: 61  ARRKESVWVRQLGRPLIEYMSLPASQYSVLDAERIERIDDNTFRCYVYRFNFFAFEVCPV 120

Query: 103 -----------------------------------SSMINRISCDSNSSNSEVQQLTSDA 127
                                              +SM+N ISCDS+ +NS  QQLTSDA
Sbjct: 121 LLVKVEEQPNGCCIKLLSCKLEGSPMVVAQNEKFDASMVNYISCDSSQNNSSEQQLTSDA 180

Query: 128 FIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSR 172
            IEVSI+VPFAF A PV+A+ESTG+++L+QIL LMLPRFM+Q  R
Sbjct: 181 VIEVSIDVPFAFSAIPVQALESTGSRILEQILALMLPRFMAQFRR 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806421|ref|XP_002871094.1| hypothetical protein ARALYDRAFT_487226 [Arabidopsis lyrata subsp. lyrata] gi|297316931|gb|EFH47353.1| hypothetical protein ARALYDRAFT_487226 [Arabidopsis lyrata subsp. lyrata]

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/223 (47%), Positives = 136/223 (60%), Gaps = 62/223 (27%)

Query: 11  TCITFSYNKI----RNPTNTSSLTLNTGFFHLAQKS------PFRVSAATSPAKARFVAR 60
           T ++FS  K     RNP+ + +++ ++ F    + S      P RVS++++P KARF+AR
Sbjct: 11  TSLSFSAKKTNRNPRNPSLSFTISSSSSFDEPPKPSLASSTPPIRVSSSSTP-KARFIAR 69

Query: 61  RKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR------------------ 102
           +K+S+ VRQLQRPLIEYMSLPASQYSVLDAERI RVDDNTFR                  
Sbjct: 70  QKQSISVRQLQRPLIEYMSLPASQYSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLL 129

Query: 103 ---------------------------------SSMINRISCDSNSSNSEVQQLTSDAFI 129
                                            +SM+NR+SCDS    +  QQ+TSDA I
Sbjct: 130 VRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGTSEQQITSDAVI 189

Query: 130 EVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSR 172
           EV+IE+PFAFR FPV AIE+TGTQVLDQILKLMLPRF+SQ+S+
Sbjct: 190 EVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQLSK 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448890|ref|XP_002270872.1| PREDICTED: uncharacterized protein SYNPCC7002_A1590 [Vitis vinifera] gi|296085939|emb|CBI31380.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (460), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 120/188 (63%), Gaps = 52/188 (27%)

Query: 36  FHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIER 95
           ++ + K  FR+SA  +P KARFVARR+ESV V+QL+RPL+EYMSLPASQYSVLDAERIER
Sbjct: 33  YNESSKPSFRISADLAP-KARFVARRRESVSVKQLERPLVEYMSLPASQYSVLDAERIER 91

Query: 96  VDDNTFR---------------------------------------------------SS 104
           VDDNTFR                                                   +S
Sbjct: 92  VDDNTFRCYVYRFRFFAFEVCPVLMVKVEEQPNGCCIRLLSCKLEGSPVVVAQNEKFHAS 151

Query: 105 MINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLP 164
           M+N+ISCDSN SNS VQQLTSD  IEV I++PF FRA PVEAIESTG QVL+QIL++MLP
Sbjct: 152 MVNKISCDSNQSNSLVQQLTSDTVIEVIIDIPFPFRAIPVEAIESTGAQVLEQILRIMLP 211

Query: 165 RFMSQVSR 172
           RFM+Q+ +
Sbjct: 212 RFMAQLVK 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515479|gb|AFK45801.1| unknown [Medicago truncatula]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/201 (51%), Positives = 123/201 (61%), Gaps = 55/201 (27%)

Query: 26  TSSLTLNTGFFH-LAQKSPFRVSAATSPA--KARFVARRKESVRVRQLQRPLIEYMSLPA 82
           +S L L T   H L Q+ P  +++AT P+  KARFVARRKESV V+QLQRPLIEYM LPA
Sbjct: 7   SSILVLPTSRCHQLKQRLPL-LASATPPSTHKARFVARRKESVSVQQLQRPLIEYMRLPA 65

Query: 83  SQYSVLDAERIERVDDNTFR---------------------------------------- 102
           SQYSVLDAERIERV ++TFR                                        
Sbjct: 66  SQYSVLDAERIERVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKLQGS 125

Query: 103 -----------SSMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTG 151
                      + M+NRISC+S+S  S VQQLTSD  IEVSIE+PFAF+A P +AIES G
Sbjct: 126 PMVAAQNDKFDAIMVNRISCESDSDKSLVQQLTSDTIIEVSIEIPFAFKAIPKQAIESAG 185

Query: 152 TQVLDQILKLMLPRFMSQVSR 172
           TQVL+QILK+MLPRFMSQ+ +
Sbjct: 186 TQVLEQILKIMLPRFMSQLVK 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500349|ref|XP_003518995.1| PREDICTED: uncharacterized protein LOC100789119 [Glycine max]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 117/190 (61%), Gaps = 55/190 (28%)

Query: 37  HLAQKSPFRVS---AATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERI 93
             A KSP R+S   +AT   KARFVARRKESV VRQLQRPLIEYM LPASQYSVLDAERI
Sbjct: 20  QCALKSP-RLSLRASATPSQKARFVARRKESVSVRQLQRPLIEYMRLPASQYSVLDAERI 78

Query: 94  ERVDDNTFR--------------------------------------------------- 102
           ERV++NTFR                                                   
Sbjct: 79  ERVNENTFRCYVYRFKFFNFEVCPVLLVKVEEQPDGCCIKLLSCKLEGSPMVAAQNDKFD 138

Query: 103 SSMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLM 162
           + M+NRISCDSN++ S +QQLTSD  IEVSIE+PF F+A P +AIES GTQVL+QIL++M
Sbjct: 139 ALMVNRISCDSNANRSLMQQLTSDTIIEVSIEIPFPFQAIPKQAIESAGTQVLEQILRIM 198

Query: 163 LPRFMSQVSR 172
           LPRFMSQ+ +
Sbjct: 199 LPRFMSQLEK 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534738|ref|XP_003535909.1| PREDICTED: uncharacterized protein LOC100797206 [Glycine max]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 111/177 (62%), Gaps = 51/177 (28%)

Query: 47  SAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR---- 102
           ++AT   KARFVARRKES+ VRQLQRPLIEYM LPASQYSVLDAERIERV++NTFR    
Sbjct: 35  ASATPSQKARFVARRKESLSVRQLQRPLIEYMRLPASQYSVLDAERIERVNENTFRCYVY 94

Query: 103 -----------------------------------------------SSMINRISCDSNS 115
                                                          + M+NRISCDSN+
Sbjct: 95  RFKFFNLEVCPVLLVKVEEQPDGCCIKLLSCKLEGSAMVAAQNDKFDALMVNRISCDSNA 154

Query: 116 SNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSR 172
           + S +QQLTSD  IEVSIE+PF F+A P +AIES GTQVL+QIL++MLPRF+SQ+ +
Sbjct: 155 NKSLMQQLTSDTIIEVSIEIPFPFQAIPKQAIESAGTQVLEQILRIMLPRFVSQLEK 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439939|ref|XP_003590247.1| (RAP Annotation release2) Galactose-binding like domain containing protein [Medicago truncatula] gi|355479295|gb|AES60498.1| (RAP Annotation release2) Galactose-binding like domain containing protein [Medicago truncatula]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 117/190 (61%), Gaps = 55/190 (28%)

Query: 37  HLAQKSPFRVSAATSPA--KARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIE 94
            L Q+ P  +++AT P+  KARFVARRKESV V+QLQRPLIEYM LPASQYSVLDAERIE
Sbjct: 19  QLKQRLPL-LASATPPSTHKARFVARRKESVSVQQLQRPLIEYMRLPASQYSVLDAERIE 77

Query: 95  RVDDNTFR---------------------------------------------------S 103
           RV ++TFR                                                   +
Sbjct: 78  RVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKLQGSPMVAAQNDKFDA 137

Query: 104 SMINRISCDSNSSNSEVQQLTSDAFIEV-SIEVPFAFRAFPVEAIESTGTQVLDQILKLM 162
            M+NRISC+S+S  S VQQLTSD  IEV SIE+PFAF+A P +AIES GTQVL+QILK+M
Sbjct: 138 IMVNRISCESDSDKSLVQQLTSDTIIEVVSIEIPFAFKAIPKQAIESAGTQVLEQILKIM 197

Query: 163 LPRFMSQVSR 172
           LPRFMSQ+ +
Sbjct: 198 LPRFMSQLVK 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493277|ref|XP_004159242.1| PREDICTED: uncharacterized protein SYNPCC7002_A1590-like [Cucumis sativus]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/209 (47%), Positives = 119/209 (56%), Gaps = 59/209 (28%)

Query: 21  RNPTNTSSLTLNTGFFHLAQ------KSPFRVSAATSPAKARFVARRKESVRVRQLQRPL 74
           +NP    SLT +  F  LA       +    +S  ++P KARF+ARR ESV VRQL RPL
Sbjct: 16  KNPKTPFSLT-HKPFLILASSANDSTRPSLPISTNSNP-KARFIARRSESVTVRQLARPL 73

Query: 75  IEYMSLPASQYSVLDAERIERVDDNTFR-------------------------------- 102
            EYMSLPASQYSVLDAERIER+DD TFR                                
Sbjct: 74  NEYMSLPASQYSVLDAERIERIDDCTFRCHVYRFKFFAFEVCPVLVVKVELQPNGCCIKL 133

Query: 103 -------------------SSMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFP 143
                              +SM+N+IS D N  NS +Q+LTSD  IEV+IE+PFAFRA P
Sbjct: 134 LSCKLEGSPIVVAQNDKFDASMVNQISYDVNRGNSLLQKLTSDTVIEVNIEIPFAFRAIP 193

Query: 144 VEAIESTGTQVLDQILKLMLPRFMSQVSR 172
           V+AIES GTQVL+QILKLMLPRF +Q+ +
Sbjct: 194 VQAIESAGTQVLEQILKLMLPRFTAQLVK 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2184377	255	AT5G04440 "AT5G04440" [Arabido	0.467	0.333	0.623	6.8e-24

TAIR|locus:2184377 AT5G04440 "AT5G04440" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/85 (62%), Positives = 67/85 (78%)

Query:    88 LDAERIERVDDNTFRSSMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAI 147
             L+   +    ++ F +SM+NR+SCDS    S  QQ+TSDA IEV+IE+PFAFR FPV AI
Sbjct:   151 LEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAI 210

Query:   148 ESTGTQVLDQILKLMLPRFMSQVSR 172
             E+TGTQVLDQILKLMLPRF+SQ+S+
Sbjct:   211 EATGTQVLDQILKLMLPRFLSQLSK 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam09366	170	pfam09366, DUF1997, Protein of unknown function (D	4e-20

>gnl|CDD|117908 pfam09366, DUF1997, Protein of unknown function (DUF1997)

 Score = 81.9 bits (203), Expect = 4e-20
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 46/160 (28%)

Query: 57  FVARRKESVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRSSM--IN------ 107
           F A +   + +     PL EY+  P   +S L D  ++ER+ D  +R ++          
Sbjct: 1   FSASQSLDLPLPAPAEPLAEYLRQPQRVFSALLDPMKVERLGDGRYRLTVRPFGFFGFEV 60

Query: 108 ------RISCDSNS-------------------------------SNSEVQQLTSDAFIE 130
                 R+  + +                                  +    L  DA + 
Sbjct: 61  EPVVVLRVEPEDDGLTIELLDCELEGLPLVNDDFDLDLRASLYPDREATETGLEGDADLS 120

Query: 131 VSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQV 170
           V++ +P   R  P   +ESTG  +L  IL+ +  R   Q+
Sbjct: 121 VTVSLPPPLRLLPEPVLESTGESLLQGILRQIKRRLTRQL 160

This family of proteins are functionally uncharacterized. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PF09366	158	DUF1997: Protein of unknown function (DUF1997); In	99.96
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	90.35

>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised

Probab=99.96  E-value=1e-28  Score=196.86  Aligned_cols=107  Identities=37%  Similarity=0.550  Sum_probs=94.6

Q ss_pred             CcchhhhhcCccchhhc-cCccceeecCccceee----------------------------------------------
Q 030167           71 QRPLIEYMSLPASQYSV-LDAERIERVDDNTFRS----------------------------------------------  103 (182)
Q Consensus        71 ~rPL~eYLrqPa~~ysv-LD~~riErL~ddtFRa----------------------------------------------  103 (182)
                      +.||+|||++|+|++++ +|++++|+|||++||+                                              
T Consensus         1 ~~~l~~YL~~~~r~~~~~~d~~~ie~l~~~~yr~~~~~~~~~~~~v~P~v~l~v~~~~~~~~i~~~~~~l~G~~~~~~~~   80 (158)
T PF09366_consen    1 QAPLAEYLSDPQRWFSALFDPMRIEPLGDNTYRLKMRPFQFFGFEVEPVVDLRVWPQDDGLTIRSLDCELRGSPLVEQND   80 (158)
T ss_pred             CCchHHHHhCchhHHHHhcCHHHcEEcCCCeEEEEEcCccEEEEEEEEEEEEEEEEcCCCeEEEEEEEEEeCCCccccCC
Confidence            36899999999995555 6999999999999992                                              


Q ss_pred             ----eeeeeEEecCCCCCCCceeEeeeceEEEEEecCCCcccccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhce
Q 030167          104 ----SMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFI  179 (182)
Q Consensus       104 ----~miNR~s~~~~~~~~~~~~L~gda~LeV~veVP~pF~l~P~~alE~tGN~lLq~VL~~i~prfL~QLl~DY~~w~~  179 (182)
                          +|.|.+.|+.   .++.+.++|+++|+|.+++|+||+++|.+++|+|||++|++|+++|+|||++||.+||+.|..
T Consensus        81 ~f~l~~~~~l~~~~---~~~~t~l~~~~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~~~l~~Dy~~w~~  157 (158)
T PF09366_consen   81 GFSLDLQASLYPEE---PPGRTRLEGDADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFLQQLQADYHRWAR  157 (158)
T ss_pred             cEEEEEEEEEEEec---CCCceEEEEEEEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                3334444443   566789999999999999999999999999999999999999999999999999999999987


Q ss_pred             e
Q 030167          180 E  180 (182)
Q Consensus       180 ~  180 (182)
                      |
T Consensus       158 ~  158 (158)
T PF09366_consen  158 E  158 (158)
T ss_pred             C
Confidence            6

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=90.35  E-value=4.2  Score=31.31  Aligned_cols=38  Identities=18%  Similarity=0.363  Sum_probs=26.9

Q ss_pred             eeeccCCcchhhhhcCccchhhcc-CccceeecCccceee
Q 030167           65 VRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRS  103 (182)
Q Consensus        65 i~V~e~~rPL~eYLrqPa~~ysvL-D~~riErL~ddtFRa  103 (182)
                      ..|+-+.--+-+||..|..+-+.+ +.+.+|.++ +.|++
T Consensus         3 ~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~~~   41 (140)
T PF06240_consen    3 FEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEYKG   41 (140)
T ss_dssp             EEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEEEE
T ss_pred             EEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEEEE
Confidence            445544455788999999966664 458999999 99984

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	91.05

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=91.05  E-value=0.87  Score=30.67  Aligned_cols=40  Identities=8%  Similarity=0.234  Sum_probs=25.1

Q ss_pred             EeeeccCCcchhhhhcCccchhhccC-ccceeecCccceee
Q 030167           64 SVRVRQLQRPLIEYMSLPASQYSVLD-AERIERVDDNTFRS  103 (182)
Q Consensus        64 ~i~V~e~~rPL~eYLrqPa~~ysvLD-~~riErL~ddtFRa  103 (182)
                      ++.|+-.+.-+=+.|.+|.+.-..+. -+.+|.+++++|.+
T Consensus         6 ~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~~~~   46 (147)
T d2pcsa1           6 SIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKA   46 (147)
T ss_dssp             EEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEE
T ss_pred             eEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCEEEE
Confidence            34444333445666666666544444 45799999999984