Citrus Sinensis ID: 030169
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 182 | 2.2.26 [Sep-21-2011] | |||||||
| P68209 | 347 | Succinyl-CoA ligase [ADP- | yes | no | 0.829 | 0.435 | 0.732 | 3e-56 | |
| Q8GTQ9 | 332 | Succinyl-CoA ligase [ADP- | N/A | no | 0.780 | 0.427 | 0.732 | 4e-56 | |
| Q8LAD2 | 341 | Succinyl-CoA ligase [ADP- | no | no | 0.824 | 0.439 | 0.700 | 7e-53 | |
| Q6DQL1 | 337 | Succinyl-CoA ligase [ADP- | N/A | no | 0.802 | 0.433 | 0.746 | 7e-50 | |
| Q6ZL94 | 331 | Probable succinyl-CoA lig | yes | no | 0.703 | 0.386 | 0.861 | 5e-49 | |
| Q9WUM5 | 346 | Succinyl-CoA ligase [ADP/ | yes | no | 0.615 | 0.323 | 0.707 | 3e-42 | |
| P36967 | 315 | Succinyl-CoA ligase [ADP/ | yes | no | 0.648 | 0.374 | 0.663 | 2e-41 | |
| Q9YGD2 | 306 | Succinyl-CoA ligase subun | N/A | no | 0.615 | 0.366 | 0.681 | 3e-40 | |
| Q1RH56 | 291 | Succinyl-CoA ligase [ADP- | yes | no | 0.576 | 0.360 | 0.698 | 1e-37 | |
| Q4ULQ8 | 292 | Succinyl-CoA ligase [ADP- | yes | no | 0.576 | 0.359 | 0.688 | 2e-36 |
| >sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/161 (73%), Positives = 130/161 (80%), Gaps = 10/161 (6%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ A+ HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSF---ASDPHPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK 116
KNTRV+CQGITGKNGTFHTEQAIEYGTKMV G VTPKKGGTEHLGLPVFNSVAEAKA+TK
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAG-VTPKKGGTEHLGLPVFNSVAEAKADTK 114
Query: 117 ANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
ANASVIYVP PFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 115 ANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
|
Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 5 |
| >sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Solanum lycopersicum GN=SCOA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/157 (73%), Positives = 123/157 (78%), Gaps = 15/157 (9%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
MARQA KLI ++ + +SS H R S A+ PAVFVDKNTR
Sbjct: 1 MARQA-TKLIANLSKK---LSSSNPHTRCSEQTV----------WIGAAPPAVFVDKNTR 46
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS 120
VICQGITGKNGTFHTEQAIEYGTKMV GGVTPKKGGTEHLGLPVFN+V EAKAETKANAS
Sbjct: 47 VICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEHLGLPVFNTVEEAKAETKANAS 105
Query: 121 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
VIYVPPPFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 106 VIYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMV 142
|
Solanum lycopersicum (taxid: 4081) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 124/157 (78%), Gaps = 7/157 (4%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
M+RQ + +L+GS+ + S L+S SR++G++ AVFVDKNTR
Sbjct: 1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTS----LVQSRSFGTTPPPPA-AVFVDKNTR 54
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS 120
VICQGITGKNGTFHTEQAIEYGTKMV G VTPKKGGTEHLGLPVFN+VAEAKAETKANAS
Sbjct: 55 VICQGITGKNGTFHTEQAIEYGTKMVAG-VTPKKGGTEHLGLPVFNTVAEAKAETKANAS 113
Query: 121 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
VIYVP PFAAAAIME + AELDL+VCITEGIPQHDMV
Sbjct: 114 VIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMV 150
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q6DQL1|SUCA2_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Solanum lycopersicum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 118/158 (74%), Positives = 128/158 (81%), Gaps = 12/158 (7%)
Query: 1 MARQALAKLIGSIGSR-RPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNT 59
MARQA +LI ++ ++ PS+ + SA+P H Y S PAVFVDKNT
Sbjct: 1 MARQA-TRLISNLSTKLNPSSPTM--------SASPLWHQYRYFGSPPPP-PAVFVDKNT 50
Query: 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA 119
RVICQGITGKNGTFHTEQAIEYGTKMV GGVTPKKGGTEHLGLPVFN+VAEAK ETKANA
Sbjct: 51 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEHLGLPVFNTVAEAKVETKANA 109
Query: 120 SVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
SV+YVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV
Sbjct: 110 SVVYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 147
|
Solanum lycopersicum (taxid: 4081) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q6ZL94|SUCA_ORYSJ Probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/130 (86%), Positives = 120/130 (92%), Gaps = 2/130 (1%)
Query: 29 LSSSAAPAAHSRNYGSSAAAS-HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVV 87
L S+A+ H+R + ++AAA+ PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MV
Sbjct: 12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMV- 70
Query: 88 GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI 147
GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI
Sbjct: 71 GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI 130
Query: 148 TEGIPQHDMV 157
TEGIPQHDMV
Sbjct: 131 TEGIPQHDMV 140
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 95/113 (84%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
S AS +++DKNT++ICQG TGK GTFH++QA+EYGTK+V GG TP KGG +HLGLPV
Sbjct: 42 SYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLV-GGTTPGKGGQKHLGLPV 100
Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 101 FNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
|
Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|P36967|SUCA_DICDI Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/119 (66%), Positives = 98/119 (82%), Gaps = 1/119 (0%)
Query: 39 SRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE 98
+RN+G ++ P+V ++K+T+VICQG TG GTFH++QAIEYGT MV GGV+P KGG +
Sbjct: 8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMV-GGVSPGKGGQK 66
Query: 99 HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
HL LPVFN+V EAK T ANA+VIYVPPP AAAAI EA++AE++LVVCITEGIPQ DMV
Sbjct: 67 HLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMV 125
|
Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q9YGD2|SUCA_COLLI Succinyl-CoA ligase subunit alpha, mitochondrial (Fragment) OS=Columba livia GN=SUCLG1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 95/113 (84%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
S +AS +++ KNT+VICQG TGK GTFH++QA++YGT +V GG++P KGG HLGLPV
Sbjct: 2 SYSASRKNLYISKNTKVICQGFTGKQGTFHSQQALDYGTNLV-GGISPGKGGKTHLGLPV 60
Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
FNSV EAK +T A+A+VIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 61 FNSVKEAKEQTGASATVIYVPPPFAAAAINEAIDAEMPLVVCITEGIPQQDMV 113
|
Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Columba livia (taxid: 8932) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q1RH56|SUCD_RICBR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ V+K T+VICQG TG GTFH+EQAI YGTKMV GGVTP KGG HL LP++N+V EA
Sbjct: 2 AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGKTHLDLPIYNTVHEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
KA+T ANASVIYVPPPFAA +I+EA++A +++VVCITEGIP DMV
Sbjct: 61 KAKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMV 106
|
Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q4ULQ8|SUCD_RICFE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sucD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MV GGVTP KGG HL LPV+N+V EA
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMV-GGVTPGKGGHTHLDLPVYNTVHEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
KA+T ANASVIYVPP FAA +I+EA++AE+++VVCITEGIP DMV
Sbjct: 61 KAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMV 106
|
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 182 | ||||||
| 409972123 | 362 | uncharacterized protein, partial [Phleum | 0.703 | 0.353 | 0.875 | 1e-54 | |
| 409972239 | 357 | uncharacterized protein, partial [Phleum | 0.703 | 0.358 | 0.875 | 1e-54 | |
| 297806865 | 347 | hypothetical protein ARALYDRAFT_487662 [ | 0.829 | 0.435 | 0.732 | 1e-54 | |
| 15241592 | 347 | Succinyl-CoA ligase [GDP-forming] subuni | 0.829 | 0.435 | 0.732 | 1e-54 | |
| 225465670 | 329 | PREDICTED: succinyl-CoA ligase [ADP-form | 0.681 | 0.376 | 0.838 | 2e-54 | |
| 302761178 | 150 | hypothetical protein SELMODRAFT_405593 [ | 0.670 | 0.813 | 0.856 | 2e-54 | |
| 350537045 | 332 | succinyl-CoA ligase [ADP-forming] subuni | 0.780 | 0.427 | 0.732 | 2e-54 | |
| 242046092 | 332 | hypothetical protein SORBIDRAFT_02g03742 | 0.703 | 0.385 | 0.853 | 2e-54 | |
| 409972341 | 302 | uncharacterized protein, partial [Phleum | 0.609 | 0.367 | 0.946 | 3e-54 | |
| 302768983 | 150 | hypothetical protein SELMODRAFT_408824 [ | 0.670 | 0.813 | 0.856 | 4e-54 |
| >gi|409972123|gb|JAA00265.1| uncharacterized protein, partial [Phleum pratense] | Back alignment and taxonomy information |
|---|
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/129 (87%), Positives = 119/129 (92%), Gaps = 1/129 (0%)
Query: 29 LSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVG 88
L S+A+ HSR Y ++AAA PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MV G
Sbjct: 44 LGSAASRFLHSRGYAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMV-G 102
Query: 89 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148
GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA+EAELDLVVCIT
Sbjct: 103 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCIT 162
Query: 149 EGIPQHDMV 157
EGIPQHDMV
Sbjct: 163 EGIPQHDMV 171
|
Source: Phleum pratense Species: Phleum pratense Genus: Phleum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|409972239|gb|JAA00323.1| uncharacterized protein, partial [Phleum pratense] | Back alignment and taxonomy information |
|---|
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/129 (87%), Positives = 119/129 (92%), Gaps = 1/129 (0%)
Query: 29 LSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVG 88
L S+A+ HSR Y ++AAA PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MV G
Sbjct: 39 LGSAASRFLHSRGYAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMV-G 97
Query: 89 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148
GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA+EAELDLVVCIT
Sbjct: 98 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCIT 157
Query: 149 EGIPQHDMV 157
EGIPQHDMV
Sbjct: 158 EGIPQHDMV 166
|
Source: Phleum pratense Species: Phleum pratense Genus: Phleum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806865|ref|XP_002871316.1| hypothetical protein ARALYDRAFT_487662 [Arabidopsis lyrata subsp. lyrata] gi|297317153|gb|EFH47575.1| hypothetical protein ARALYDRAFT_487662 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/161 (73%), Positives = 130/161 (80%), Gaps = 10/161 (6%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ A+ HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSF---ASDPHPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK 116
KNTRV+CQGITGKNGTFHTEQAIEYGTKMV G VTPKKGGTEHLGLPVFNSVAEAKA+TK
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAG-VTPKKGGTEHLGLPVFNSVAEAKADTK 114
Query: 117 ANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
ANASVIYVP PFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 115 ANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241592|ref|NP_196447.1| Succinyl-CoA ligase [GDP-forming] subunit alpha-1 [Arabidopsis thaliana] gi|57014135|sp|P68209.1|SUCA1_ARATH RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial; AltName: Full=Succinyl-CoA synthetase subunit alpha-1; Short=SCS-alpha-1; Flags: Precursor gi|3660467|emb|CAA05023.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|10178272|emb|CAC08330.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|18252215|gb|AAL61940.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|21387057|gb|AAM47932.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|21536557|gb|AAM60889.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|332003896|gb|AED91279.1| Succinyl-CoA ligase [GDP-forming] subunit alpha-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/161 (73%), Positives = 130/161 (80%), Gaps = 10/161 (6%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ A+ HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSF---ASDPHPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK 116
KNTRV+CQGITGKNGTFHTEQAIEYGTKMV G VTPKKGGTEHLGLPVFNSVAEAKA+TK
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAG-VTPKKGGTEHLGLPVFNSVAEAKADTK 114
Query: 117 ANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
ANASVIYVP PFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 115 ANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|225465670|ref|XP_002271746.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [Vitis vinifera] gi|296085314|emb|CBI29046.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/130 (83%), Positives = 117/130 (90%), Gaps = 6/130 (4%)
Query: 28 RLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVV 87
R+ S AP SR+ G++A PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV
Sbjct: 15 RIKSPLAPP--SRHLGTTAP---PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV- 68
Query: 88 GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI 147
GGVTPKKGG EHLGLP+FN+VAEAKAET+ANASVIYVPPPFAAAAIMEA+EAELDLVVCI
Sbjct: 69 GGVTPKKGGMEHLGLPIFNTVAEAKAETRANASVIYVPPPFAAAAIMEAVEAELDLVVCI 128
Query: 148 TEGIPQHDMV 157
TEGIPQHDMV
Sbjct: 129 TEGIPQHDMV 138
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|302761178|ref|XP_002964011.1| hypothetical protein SELMODRAFT_405593 [Selaginella moellendorffii] gi|300167740|gb|EFJ34344.1| hypothetical protein SELMODRAFT_405593 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 114/125 (91%), Gaps = 3/125 (2%)
Query: 32 SAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91
S++ + R +GSSA S PAVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GGVT
Sbjct: 15 SSSAGSQRRGFGSSA--STPAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMV-GGVT 71
Query: 92 PKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151
PKKGGTEHLGLPVFNSV EAKAETKANA+VIYVPP FAAAAIMEA+EAELDLVVCITEGI
Sbjct: 72 PKKGGTEHLGLPVFNSVHEAKAETKANATVIYVPPKFAAAAIMEAVEAELDLVVCITEGI 131
Query: 152 PQHDM 156
PQHDM
Sbjct: 132 PQHDM 136
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350537045|ref|NP_001234277.1| succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [Solanum lycopersicum] gi|75150501|sp|Q8GTQ9.1|SUCA1_SOLLC RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial; Short=SlSCoALalpha1; Flags: Precursor gi|27357175|gb|AAN86619.1| succinyl-CoA ligase alpha 1 subunit [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/157 (73%), Positives = 123/157 (78%), Gaps = 15/157 (9%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
MARQA KLI ++ + +SS H R S A+ PAVFVDKNTR
Sbjct: 1 MARQA-TKLIANLSKK---LSSSNPHTRCSEQTV----------WIGAAPPAVFVDKNTR 46
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS 120
VICQGITGKNGTFHTEQAIEYGTKMV GGVTPKKGGTEHLGLPVFN+V EAKAETKANAS
Sbjct: 47 VICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEHLGLPVFNTVEEAKAETKANAS 105
Query: 121 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
VIYVPPPFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 106 VIYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMV 142
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|242046092|ref|XP_002460917.1| hypothetical protein SORBIDRAFT_02g037420 [Sorghum bicolor] gi|241924294|gb|EER97438.1| hypothetical protein SORBIDRAFT_02g037420 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/130 (85%), Positives = 120/130 (92%), Gaps = 2/130 (1%)
Query: 29 LSSSAAPAAHSRNYGSSAAAS-HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVV 87
L S+A+ H+R + ++AAA+ PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MV
Sbjct: 13 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMV- 71
Query: 88 GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI 147
GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM+AELDLVVCI
Sbjct: 72 GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMDAELDLVVCI 131
Query: 148 TEGIPQHDMV 157
TEGIPQHDMV
Sbjct: 132 TEGIPQHDMV 141
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|409972341|gb|JAA00374.1| uncharacterized protein, partial [Phleum pratense] | Back alignment and taxonomy information |
|---|
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 108/112 (96%), Gaps = 1/112 (0%)
Query: 46 AAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVF 105
AAA PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MV GGVTPKKGGTEHLGLPVF
Sbjct: 1 AAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMV-GGVTPKKGGTEHLGLPVF 59
Query: 106 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
NSVAEAKAETKANASVIYVPPPFAAAAIMEA+EAELDLVVCITEGIPQHDMV
Sbjct: 60 NSVAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCITEGIPQHDMV 111
|
Source: Phleum pratense Species: Phleum pratense Genus: Phleum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302768983|ref|XP_002967911.1| hypothetical protein SELMODRAFT_408824 [Selaginella moellendorffii] gi|300164649|gb|EFJ31258.1| hypothetical protein SELMODRAFT_408824 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 113/125 (90%), Gaps = 3/125 (2%)
Query: 32 SAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91
S + + R +GSSA S PAVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GGVT
Sbjct: 15 SNSAGSQRRGFGSSA--STPAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMV-GGVT 71
Query: 92 PKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151
PKKGGTEHLGLPVFNSV EAKAETKANA+VIYVPP FAAAAIMEA+EAELDLVVCITEGI
Sbjct: 72 PKKGGTEHLGLPVFNSVHEAKAETKANATVIYVPPKFAAAAIMEAVEAELDLVVCITEGI 131
Query: 152 PQHDM 156
PQHDM
Sbjct: 132 PQHDM 136
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 182 | ||||||
| TAIR|locus:2150773 | 347 | AT5G08300 [Arabidopsis thalian | 0.829 | 0.435 | 0.583 | 5.5e-38 | |
| UNIPROTKB|Q6DQL1 | 337 | Q6DQL1 "Succinyl-CoA ligase [A | 0.802 | 0.433 | 0.575 | 2.4e-37 | |
| UNIPROTKB|Q8GTQ9 | 332 | SCOA "Succinyl-CoA ligase [ADP | 0.780 | 0.427 | 0.573 | 9.2e-36 | |
| TAIR|locus:2166756 | 341 | AT5G23250 [Arabidopsis thalian | 0.824 | 0.439 | 0.554 | 1.2e-35 | |
| UNIPROTKB|F1SNZ6 | 363 | SUCLG1 "Succinyl-CoA ligase [A | 0.615 | 0.308 | 0.548 | 4.7e-29 | |
| UNIPROTKB|F1SNZ7 | 346 | SUCLG1 "Succinyl-CoA ligase [A | 0.615 | 0.323 | 0.548 | 4.7e-29 | |
| UNIPROTKB|O19069 | 346 | SUCLG1 "Succinyl-CoA ligase [A | 0.615 | 0.323 | 0.548 | 4.7e-29 | |
| MGI|MGI:1927234 | 346 | Suclg1 "succinate-CoA ligase, | 0.758 | 0.398 | 0.467 | 2.2e-27 | |
| RGD|619821 | 346 | Suclg1 "succinate-CoA ligase, | 0.615 | 0.323 | 0.539 | 3.5e-27 | |
| UNIPROTKB|E2R0Y5 | 346 | SUCLG1 "Uncharacterized protei | 0.829 | 0.436 | 0.461 | 4.5e-27 |
| TAIR|locus:2150773 AT5G08300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 94/161 (58%), Positives = 104/161 (64%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ S HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSFASDP---HPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEAKAETK 116
KNTRV+CQGITGKNGTFHTEQAIEY EHLGLPVFNSVAEAKA+TK
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGT-EHLGLPVFNSVAEAKADTK 114
Query: 117 ANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
ANASVIYVP PF LDL+VCITEGIPQHDMV
Sbjct: 115 ANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
|
|
| UNIPROTKB|Q6DQL1 Q6DQL1 "Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial" [Solanum lycopersicum (taxid:4081)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 91/158 (57%), Positives = 101/158 (63%)
Query: 1 MARQALAKLIGSIGSR-RPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNT 59
MARQA +LI ++ ++ PS+ + SA+P H Y S PAVFVDKNT
Sbjct: 1 MARQA-TRLISNLSTKLNPSSPTM--------SASPLWHQYRYFGSPPPP-PAVFVDKNT 50
Query: 60 RVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEAKAETKANA 119
RVICQGITGKNGTFHTEQAIEY EHLGLPVFN+VAEAK ETKANA
Sbjct: 51 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EHLGLPVFNTVAEAKVETKANA 109
Query: 120 SVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
SV+YVPPPF LDLVVCITEGIPQHDMV
Sbjct: 110 SVVYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 147
|
|
| UNIPROTKB|Q8GTQ9 SCOA "Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial" [Solanum lycopersicum (taxid:4081)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 90/157 (57%), Positives = 97/157 (61%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
MARQA KLI ++ + +SS H R S A+ PAVFVDKNTR
Sbjct: 1 MARQA-TKLIANLSKK---LSSSNPHTRCSEQTV----------WIGAAPPAVFVDKNTR 46
Query: 61 VICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEAKAETKANAS 120
VICQGITGKNGTFHTEQAIEY EHLGLPVFN+V EAKAETKANAS
Sbjct: 47 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EHLGLPVFNTVEEAKAETKANAS 105
Query: 121 VIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
VIYVPPPF LDL+VCITEGIPQHDMV
Sbjct: 106 VIYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMV 142
|
|
| TAIR|locus:2166756 AT5G23250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 87/157 (55%), Positives = 100/157 (63%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
M+RQ + +L+GS+ + S L+S SR++G++ AVFVDKNTR
Sbjct: 1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTS----LVQSRSFGTTPPPP-AAVFVDKNTR 54
Query: 61 VICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEAKAETKANAS 120
VICQGITGKNGTFHTEQAIEY EHLGLPVFN+VAEAKAETKANAS
Sbjct: 55 VICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGT-EHLGLPVFNTVAEAKAETKANAS 113
Query: 121 VIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
VIYVP PF LDL+VCITEGIPQHDMV
Sbjct: 114 VIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMV 150
|
|
| UNIPROTKB|F1SNZ6 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 62/113 (54%), Positives = 71/113 (62%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EY HLGLPV
Sbjct: 42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT-HLGLPV 100
Query: 105 FNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 101 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 153
|
|
| UNIPROTKB|F1SNZ7 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 62/113 (54%), Positives = 71/113 (62%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EY HLGLPV
Sbjct: 42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT-HLGLPV 100
Query: 105 FNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 101 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 153
|
|
| UNIPROTKB|O19069 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 62/113 (54%), Positives = 71/113 (62%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EY HLGLPV
Sbjct: 42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT-HLGLPV 100
Query: 105 FNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 101 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 153
|
|
| MGI|MGI:1927234 Suclg1 "succinate-CoA ligase, GDP-forming, alpha subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 65/139 (46%), Positives = 82/139 (58%)
Query: 19 STASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQA 78
S++S ++ RL S + S AS +++DKNT++ICQG TGK GTFH++QA
Sbjct: 16 SSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQA 75
Query: 79 IEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXX 138
+EY +HLGLPVFN+V EAK +T A ASVIYVPPPF
Sbjct: 76 LEYGTKLVGGTTPGKGGQ-KHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAID 134
Query: 139 XXLDLVVCITEGIPQHDMV 157
+ LVVCITEGIPQ DMV
Sbjct: 135 AEIPLVVCITEGIPQQDMV 153
|
|
| RGD|619821 Suclg1 "succinate-CoA ligase, alpha subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 61/113 (53%), Positives = 72/113 (63%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPV 104
S AS +++DKNT+VICQG TGK GTFH++QA+EY +HLGLPV
Sbjct: 42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGK-KHLGLPV 100
Query: 105 FNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 101 FNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
|
|
| UNIPROTKB|E2R0Y5 SUCLG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 72/156 (46%), Positives = 87/156 (55%)
Query: 2 ARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRV 61
A A A LI ++ S A++ RL S + + S AS ++VDKNT+V
Sbjct: 3 AALAAAALIATMASGSSGLAAA----RLLSRSFLLQQNGIRHCSYIASRKHLYVDKNTKV 58
Query: 62 ICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEAKAETKANASV 121
ICQG TGK GTFH++QA++Y HLGLPVFN+V EAK ET A ASV
Sbjct: 59 ICQGFTGKQGTFHSQQALDYGTQLVGGTTPGKGGKT-HLGLPVFNTVKEAKEETGATASV 117
Query: 122 IYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
IYVPPPF + LVVCITEGIPQ DMV
Sbjct: 118 IYVPPPFAAAAINEAVEAEVPLVVCITEGIPQQDMV 153
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P68209 | SUCA1_ARATH | 6, ., 2, ., 1, ., 5 | 0.7329 | 0.8296 | 0.4351 | yes | no |
| Q9WUM5 | SUCA_MOUSE | 6, ., 2, ., 1, ., 5 | 0.7079 | 0.6153 | 0.3236 | yes | no |
| Q6ZL94 | SUCA_ORYSJ | 6, ., 2, ., 1, ., 5 | 0.8615 | 0.7032 | 0.3867 | yes | no |
| Q94522 | SUCA_DROME | 6, ., 2, ., 1, ., 5 | 0.7184 | 0.5604 | 0.3109 | yes | no |
| P53597 | SUCA_HUMAN | 6, ., 2, ., 1, ., 5 | 0.7256 | 0.6153 | 0.3236 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 182 | |||
| PLN00125 | 300 | PLN00125, PLN00125, Succinyl-CoA ligase [GDP-formi | 8e-70 | |
| PRK05678 | 291 | PRK05678, PRK05678, succinyl-CoA synthetase subuni | 1e-67 | |
| PTZ00187 | 317 | PTZ00187, PTZ00187, succinyl-CoA synthetase alpha | 4e-67 | |
| COG0074 | 293 | COG0074, SucD, Succinyl-CoA synthetase, alpha subu | 1e-59 | |
| TIGR01019 | 286 | TIGR01019, sucCoAalpha, succinyl-CoA synthetase, a | 7e-59 | |
| pfam02629 | 96 | pfam02629, CoA_binding, CoA binding domain | 2e-37 | |
| smart00881 | 100 | smart00881, CoA_binding, CoA binding domain | 7e-34 | |
| PLN02522 | 608 | PLN02522, PLN02522, ATP citrate (pro-S)-lyase | 0.002 |
| >gnl|CDD|215066 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 8e-70
Identities = 105/111 (94%), Positives = 108/111 (97%), Gaps = 1/111 (0%)
Query: 47 AASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFN 106
A+ PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GGVTPKKGGTEHLGLPVFN
Sbjct: 1 ASPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEHLGLPVFN 59
Query: 107 SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
+VAEAKAETKANASVIYVPPPFAAAAI+EAMEAELDLVVCITEGIPQHDMV
Sbjct: 60 TVAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMV 110
|
Length = 300 |
| >gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 1e-67
Identities = 73/106 (68%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
++ ++K+T+VI QGITGK GTFHTEQ + YGT +V GGVTP KGGT LGLPVFN+VAEA
Sbjct: 2 SILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIV-GGVTPGKGGTTVLGLPVFNTVAEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
T ANASVIYVPPPFAA AI+EA++A +DL+VCITEGIP DM+
Sbjct: 61 VEATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDML 106
|
Length = 291 |
| >gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 4e-67
Identities = 88/128 (68%), Positives = 102/128 (79%), Gaps = 3/128 (2%)
Query: 32 SAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91
AA ++ + ++ S P V+V+KNT+VICQGITGK GTFHTEQAIEYGTKMV GGV
Sbjct: 3 GAAFMILKVSFRARSSTSAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMV-GGVN 61
Query: 92 PKKGGTEHL--GLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149
PKK GT HL GLPVF +V EAK T A+ASVIYVPPP AA+AI+EA+EAE+ LVVCITE
Sbjct: 62 PKKAGTTHLKHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIEAIEAEIPLVVCITE 121
Query: 150 GIPQHDMV 157
GIPQHDMV
Sbjct: 122 GIPQHDMV 129
|
Length = 317 |
| >gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-59
Identities = 71/106 (66%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
++ ++K+T+VI QGITGK GTFHTEQ + YGTK+V GGVTP KGG LGLPVFN+V EA
Sbjct: 2 SILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIV-GGVTPGKGGQTILGLPVFNTVEEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
ET ANASVI+VPPPFAA AI+EA++A + LVV ITEGIP DM+
Sbjct: 61 VKETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDML 106
|
Length = 293 |
| >gnl|CDD|130091 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 7e-59
Identities = 70/105 (66%), Positives = 85/105 (80%), Gaps = 1/105 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
+ +DK+T+VI QGITG G+FHTEQ + YGT +V GGVTP KGGT LGLPVF+SV EA
Sbjct: 1 ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIV-GGVTPGKGGTTVLGLPVFDSVKEAV 59
Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
ET ANASVI+VP PFAA AI EA++A ++L+VCITEGIP HDM+
Sbjct: 60 EETGANASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDML 104
|
This model describes succinyl-CoA synthetase alpha subunits but does not discriminate between GTP-specific and ATP-specific reactions. The model is designated as subfamily rather than equivalog for that reason. ATP citrate lyases appear to form an outgroup [Energy metabolism, TCA cycle]. Length = 286 |
| >gnl|CDD|202320 pfam02629, CoA_binding, CoA binding domain | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-37
Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 56 DKNTRVICQGITGKN--GTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA 113
DK+T+V G G G +H Q + YG KMV GV P+KGGTE G+PV+ SV E +
Sbjct: 1 DKDTKVAVIGAGGLGIQGLYHFIQLLGYGIKMV-FGVNPRKGGTEVGGIPVYKSVDELEE 59
Query: 114 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 150
+T + +VI VP PFA AI E ++A + +V IT G
Sbjct: 60 DTGVDVAVITVPAPFAQEAIDELVDAGIKGIVNITPG 96
|
This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 96 |
| >gnl|CDD|214881 smart00881, CoA_binding, CoA binding domain | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-34
Identities = 46/101 (45%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 54 FVDKNTRVICQGITGKNGTFHTEQAI---EYGTKMVVGGVTPKKGGTEHLGLPVFNSVAE 110
++ NT V G +G G+F EYGTK V GGV P K G + G+PV++SVAE
Sbjct: 1 LLNPNTSVAVVGASGNLGSFGLAVMRNLLEYGTKFV-GGVYPGKVGPKVDGVPVYDSVAE 59
Query: 111 AKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151
A ET + +VI+VP A AI EA+EA + +V ITEGI
Sbjct: 60 APEETGVDVAVIFVPAEAAPDAIDEAIEAGIKGIVVITEGI 100
|
This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 100 |
| >gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.002
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 96 GTEHLGLPVFNSVAEA-KAETKANASVIYVPPPFAAAAIMEAMEAE-LDLVVCITEGIPQ 153
G E + +PV S+ A KA A+ + + AAA+ MEA++ + +V I EG+P+
Sbjct: 57 GQEEIAIPVHGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPE 116
Query: 154 HDM--VINFTRVN 164
D +I + R N
Sbjct: 117 SDTKQLIAYARAN 129
|
Length = 608 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 182 | |||
| KOG1255 | 329 | consensus Succinyl-CoA synthetase, alpha subunit [ | 99.97 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 99.97 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 99.96 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 99.9 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 99.87 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 99.85 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 99.84 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 99.78 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 99.76 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 99.72 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 99.68 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 99.67 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 99.63 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 99.6 | |
| PLN02522 | 608 | ATP citrate (pro-S)-lyase | 99.59 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function pr | 99.51 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 99.49 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 99.47 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 99.11 | |
| COG1042 | 598 | Acyl-CoA synthetase (NDP forming) [Energy producti | 98.96 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.9 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 98.82 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.74 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 98.74 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.61 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.55 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 98.52 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 98.4 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.37 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 98.35 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 98.27 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 98.24 | |
| PRK06091 | 555 | membrane protein FdrA; Validated | 98.15 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 98.07 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 98.0 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 98.0 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.99 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.96 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 97.95 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.95 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.94 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.94 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.93 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.92 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.9 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.88 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 97.88 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 97.87 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.86 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.85 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 97.85 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.83 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.8 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.76 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.71 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.71 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.7 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.7 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.69 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 97.68 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.59 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 97.59 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.59 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.58 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.52 | |
| PLN02256 | 304 | arogenate dehydrogenase | 97.52 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.5 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.47 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.44 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 97.42 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 97.42 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 97.41 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.4 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.39 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 97.38 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 97.38 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 97.37 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.37 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.36 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 97.35 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.35 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.34 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 97.33 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 97.3 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 97.29 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.28 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.27 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.25 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.24 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.22 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.22 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.21 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.21 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.19 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.17 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.16 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.15 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.15 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 97.13 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 97.1 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 97.04 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.03 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 97.02 | |
| PLN02712 | 667 | arogenate dehydrogenase | 97.01 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.01 | |
| TIGR03023 | 451 | WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp | 96.99 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.99 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.96 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.95 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 96.94 | |
| TIGR03025 | 445 | EPS_sugtrans exopolysaccharide biosynthesis polypr | 96.94 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.92 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 96.9 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.9 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 96.89 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.89 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 96.88 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.86 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.86 | |
| TIGR03022 | 456 | WbaP_sugtrans Undecaprenyl-phosphate galactose pho | 96.84 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.84 | |
| PRK15204 | 476 | undecaprenyl-phosphate galactose phosphotransferas | 96.83 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 96.82 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.81 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 96.8 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 96.8 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 96.8 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 96.75 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.75 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 96.74 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 96.73 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 96.72 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.7 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 96.69 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 96.69 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 96.69 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 96.69 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 96.68 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 96.67 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 96.67 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.65 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 96.65 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.64 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 96.62 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.59 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.49 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 96.48 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 96.45 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.43 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.43 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 96.43 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 96.41 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.41 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 96.4 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.4 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 96.39 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.37 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.35 | |
| PRK10124 | 463 | putative UDP-glucose lipid carrier transferase; Pr | 96.34 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 96.32 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.3 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.3 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.26 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.23 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 96.19 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.19 | |
| TIGR03013 | 442 | EpsB_2 sugar transferase, PEP-CTERM system associa | 96.17 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 96.17 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.14 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 96.09 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.08 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.07 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 96.06 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 96.05 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.02 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 96.01 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.0 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 95.91 | |
| PF13727 | 175 | CoA_binding_3: CoA-binding domain; PDB: 3NKL_B. | 95.9 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 95.9 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 95.85 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 95.82 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 95.81 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 95.77 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 95.75 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 95.72 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 95.71 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 95.66 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 95.66 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.66 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 95.61 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 95.57 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.56 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.52 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.51 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 95.5 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.49 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 95.47 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 95.42 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.41 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.41 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 95.4 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 95.39 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 95.37 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 95.34 | |
| PF00044 | 151 | Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, | 95.33 | |
| COG4693 | 361 | PchG Oxidoreductase (NAD-binding), involved in sid | 95.32 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.23 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 95.23 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.21 | |
| PLN02696 | 454 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | 95.21 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 95.2 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 95.19 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.17 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.14 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 95.12 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.12 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.1 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.99 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 94.96 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 94.95 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 94.95 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.95 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 94.93 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 94.92 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.89 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 94.89 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 94.87 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 94.84 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 94.79 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.78 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 94.75 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.75 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 94.71 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.68 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 94.67 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.66 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 94.65 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.65 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.61 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.58 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 94.56 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 94.54 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.52 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 94.51 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.51 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.48 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 94.48 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 94.47 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 94.47 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 94.46 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 94.45 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.44 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 94.42 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 94.4 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 94.4 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 94.4 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.39 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 94.37 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.33 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.33 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.31 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 94.26 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 94.23 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 94.22 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 94.22 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.21 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 94.21 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 94.19 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 94.19 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.17 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 94.16 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 94.13 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 94.12 | |
| PLN02494 | 477 | adenosylhomocysteinase | 94.12 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 94.11 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.02 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 94.01 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 94.01 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 93.98 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 93.98 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 93.97 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 93.95 | |
| PRK15425 | 331 | gapA glyceraldehyde-3-phosphate dehydrogenase A; P | 93.89 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 93.88 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 93.83 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 93.82 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 93.8 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 93.74 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 93.74 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.74 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 93.74 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.69 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 93.69 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.66 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 93.61 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 93.6 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 93.57 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 93.57 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 93.56 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 93.52 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 93.51 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.49 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 93.49 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 93.47 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 93.45 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 93.4 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.39 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 93.36 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 93.34 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 93.29 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 93.29 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 93.28 | |
| TIGR00243 | 389 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 93.26 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 93.25 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 93.23 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 93.2 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 93.17 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.17 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 93.13 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 93.12 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 93.1 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 93.09 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.09 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 93.07 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 93.06 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 93.05 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 93.04 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.03 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.02 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 93.02 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 93.02 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 93.01 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 92.99 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 92.99 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 92.98 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 92.96 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 92.96 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 92.93 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 92.89 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 92.86 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 92.83 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 92.79 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 92.78 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 92.76 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 92.76 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 92.74 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 92.74 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 92.72 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.71 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.71 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 92.68 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 92.67 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 92.66 | |
| PF07755 | 301 | DUF1611: Protein of unknown function (DUF1611); In | 92.65 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 92.63 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 92.62 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 92.61 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 92.61 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 92.57 | |
| COG1810 | 224 | Uncharacterized protein conserved in archaea [Func | 92.57 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.56 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 92.54 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 92.51 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 92.48 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 92.48 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 92.47 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 92.45 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 92.45 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 92.45 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.44 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.43 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 92.42 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 92.41 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 92.41 | |
| PTZ00434 | 361 | cytosolic glyceraldehyde 3-phosphate dehydrogenase | 92.41 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 92.39 | |
| PRK05717 | 255 | oxidoreductase; Validated | 92.3 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 92.26 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 92.23 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 92.23 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 92.22 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 92.18 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 92.17 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.17 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 92.15 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 92.09 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 92.08 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 92.08 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 92.08 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 92.03 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 92.03 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 92.03 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 92.02 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 92.01 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 92.0 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 91.99 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 91.99 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 91.96 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 91.94 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 91.94 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 91.92 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.91 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 91.88 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 91.85 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.84 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 91.84 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 91.84 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 91.81 | |
| PLN02700 | 377 | homoserine dehydrogenase family protein | 91.79 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 91.79 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 91.78 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 91.78 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 91.77 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 91.72 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 91.69 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 91.66 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 91.64 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 91.63 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 91.62 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 91.6 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 91.58 | |
| PRK08643 | 256 | acetoin reductase; Validated | 91.57 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 91.54 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 91.53 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 91.52 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 91.52 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 91.5 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 91.37 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 91.36 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 91.34 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 91.34 | |
| PRK07411 | 390 | hypothetical protein; Validated | 91.32 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 91.31 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 91.29 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 91.27 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 91.25 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 91.23 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 91.21 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 91.16 | |
| KOG1254 | 600 | consensus ATP-citrate lyase [Energy production and | 91.15 | |
| PLN02477 | 410 | glutamate dehydrogenase | 91.14 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 91.13 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 91.12 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 91.11 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 91.05 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 91.02 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 90.95 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 90.91 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 90.87 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 90.86 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 90.83 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 90.8 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 90.78 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 90.75 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 90.65 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 90.55 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 90.51 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.47 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.46 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 90.46 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 90.43 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 90.41 | |
| TIGR01534 | 327 | GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, | 90.41 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 90.39 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 90.38 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 90.38 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 90.32 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 90.31 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 90.3 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.3 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 90.29 | |
| PF08484 | 160 | Methyltransf_14: C-methyltransferase C-terminal do | 90.26 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 90.25 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 90.18 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.1 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 90.09 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.07 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 90.06 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 89.97 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 89.9 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 89.88 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.88 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 89.86 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 89.83 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 89.77 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 89.72 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 89.68 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 89.58 | |
| PLN02237 | 442 | glyceraldehyde-3-phosphate dehydrogenase B | 89.56 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 89.54 | |
| PRK08289 | 477 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 89.53 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 89.51 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 89.46 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 89.46 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 89.44 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 89.44 | |
| PF07085 | 105 | DRTGG: DRTGG domain; InterPro: IPR010766 This pres | 89.37 |
| >KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=231.57 Aligned_cols=129 Identities=65% Similarity=0.982 Sum_probs=121.4
Q ss_pred cccccccccccccCCCCCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHh
Q 030169 34 APAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA 113 (182)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~ 113 (182)
++....|.+.|.|.+|+.++++++++||++||||||+|+++.+.+++||+++| +|++|++.|+++.|+|||.|++|+.+
T Consensus 14 ~~~~~~~~~~s~y~~T~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~V-gG~~pkK~Gt~HLG~PVF~sV~eA~~ 92 (329)
T KOG1255|consen 14 LSLGILRVFKSLYNKTISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVV-GGVNPKKGGTTHLGLPVFNSVAEAKK 92 (329)
T ss_pred cCcchhhhhcchhhhhhhceeecCCceEEEecccCCccceeHHHHHHhCCcee-eccCCCcCcccccCchhhhhHHHHHH
Confidence 33344555567888999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 114 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 114 ~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
++++|+.++||||..+..+++||+|+.|++|||||||+|.|||.++.++-
T Consensus 93 ~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L 142 (329)
T KOG1255|consen 93 ETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHAL 142 (329)
T ss_pred hhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=229.24 Aligned_cols=118 Identities=73% Similarity=1.103 Sum_probs=113.5
Q ss_pred cCCCCCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec--CccccccHHHHHhccCCcEEEEe
Q 030169 46 AAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL--GLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 46 ~~~~~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~--GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
|++|++++++++++||+|||+||++|+.|++.|++||++|| |||+|+++|++++ |+|||+|++|+++++++|++++|
T Consensus 17 ~~~~~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv-~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~avI~ 95 (317)
T PTZ00187 17 SSTSAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMV-GGVNPKKAGTTHLKHGLPVFATVKEAKKATGADASVIY 95 (317)
T ss_pred HhccCccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEE-EEECCCCCCceEecCCccccCCHHHHhcccCCCEEEEe
Confidence 44999999999999999999999999999999999999999 9999999999999 99999999999997779999999
Q ss_pred eChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 124 VPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 124 Vpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
||+.++.++++||+++||+.+||+|+|||++|+.+++++++
T Consensus 96 VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~ 136 (317)
T PTZ00187 96 VPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALL 136 (317)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHh
Confidence 99999999999999999999999999999999999987764
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=217.73 Aligned_cols=115 Identities=62% Similarity=0.919 Sum_probs=111.8
Q ss_pred CeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 51 ~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
|++++++++||+|||++|++|+++++.|++||+++| +||+|+++|+++.|+|||++++|+++++++|++++||||.+|.
T Consensus 1 m~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V-~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aa 79 (293)
T COG0074 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIV-GGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAA 79 (293)
T ss_pred CceeecCCCeEEEeccccccchHHHHHHHHhCCcee-ecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHH
Confidence 678999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
|++.||+++||++|||||||+|++|+.++++.+++-
T Consensus 80 dai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~ 115 (293)
T COG0074 80 DAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREK 115 (293)
T ss_pred HHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999653
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=185.45 Aligned_cols=115 Identities=90% Similarity=1.286 Sum_probs=105.2
Q ss_pred CCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 50 ~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
-|++++++++||+|||+||+.|+.+++.|++||++|+ |||+|++.++++.|+|+|+|++|+++..++|++++++|+..+
T Consensus 4 ~~~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~-~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v 82 (300)
T PLN00125 4 PPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFA 82 (300)
T ss_pred CceEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEE-EEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHHH
Confidence 3689999999999999999999999999999999999 999999877889999999999999985458999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH-HHhcc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINF-TRVNI 165 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~-~~ak~ 165 (182)
.++++||.++|++.++++|+||++.+++++. +++++
T Consensus 83 ~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~ 119 (300)
T PLN00125 83 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQ 119 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhh
Confidence 9999999999999999999999999855444 44654
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-22 Score=173.46 Aligned_cols=114 Identities=61% Similarity=0.962 Sum_probs=106.4
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+++++++||+|+|+||++|+.+++.|++||++++ +||+|++.+.++.|+|+|+|++|+++..++|++++++|+..+.++
T Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v-~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~ 79 (286)
T TIGR01019 1 ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIV-GGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADA 79 (286)
T ss_pred CeecCCCcEEEecCCcHHHHHHHHHHHhCCCCEE-EEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHH
Confidence 3789999999999999999999999999999988 999999777889999999999999984348999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
++||.++|++.++++|+||++++..+|.+.|++--
T Consensus 80 l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~g 114 (286)
T TIGR01019 80 IFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESG 114 (286)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999997643
|
ATP citrate lyases appear to form an outgroup. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=149.84 Aligned_cols=111 Identities=25% Similarity=0.336 Sum_probs=94.6
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCC---CCeEe--------cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKK---GGTEH--------LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~---~G~~i--------~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+||+|+|++||||+.+.+.+.+ .+++++ ++++++. .|+++ .|+|++++++++.+ ++|++|||+.|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv-~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~--~~DVvIDfT~p 77 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELV-GAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE--EADVVIDFTNP 77 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEE-EEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT--H-SEEEEES-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEE-EEEecCCcccccchhhhhhCcCCcccccchhHHHhcc--cCCEEEEcCCh
Confidence 5899999999999999999997 789999 9988887 33333 48999999999999 49999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc-chh
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 173 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~-~~~ 173 (182)
+.+.+.+++|+++|+++|++ |||++.+|+.+|.++|+++||-. .||
T Consensus 78 ~~~~~~~~~~~~~g~~~ViG-TTG~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIG-TTGFSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE--SSSHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred HHhHHHHHHHHhCCCCEEEE-CCCCCHHHHHHHHHHhccCCEEEeCCC
Confidence 99999999999999999999 99999999999999999999854 344
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=163.75 Aligned_cols=115 Identities=63% Similarity=0.989 Sum_probs=105.2
Q ss_pred CeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 51 ~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
|++++++++||+|+|+||+.|+.+.++|+++|++.+ .+|+|+..+.++.|+|+|+|++|+++.+++|++++++|++.+.
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v-~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~ 79 (291)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIV-GGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAA 79 (291)
T ss_pred CceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEE-EEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHH
Confidence 467999999999999999999999999999998766 8999995446799999999999999832399999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+++++|.++|++.++++|+||+++|..+|.++|++-
T Consensus 80 ~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~ 115 (291)
T PRK05678 80 DAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERK 115 (291)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999989999999764
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=128.19 Aligned_cols=94 Identities=32% Similarity=0.361 Sum_probs=79.9
Q ss_pred cCCceEEEEccCCCCchhhhH-HHHHhCCceE-EeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTE-QAIEYGTKMV-VGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k-~~~~~g~~IV-~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
|++++|+|+|+ |++|++... ....+|++++ +.++||++.|+++.|+|||++++|+.+.+++|++++++|++.+++++
T Consensus 1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~ 79 (96)
T PF02629_consen 1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA 79 (96)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence 57899999999 999997754 3335564443 15899999999999999999999998866799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCC
Q 030169 134 MEAMEAELDLVVCITEG 150 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG 150 (182)
++++++||+.||++|+|
T Consensus 80 ~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 80 DELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHHHHTT-SEEEEESSS
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999999986
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-18 Score=148.65 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=98.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCC-----------CeEecCccccccHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKG-----------GTEHLGLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~-----------G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
.+||+|.|++||||+.+++.+.+. +.+++ |+++.... |....|+||++++..... ++|++|||+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~-aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~--~~DV~IDFT~ 78 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELV-AAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA--DADVLIDFTT 78 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEE-EEEecCCccccccchhhhccccccCceeecchhhccc--CCCEEEECCC
Confidence 478999999999999999999965 59999 98888754 213568999999766666 8999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc-chh
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 173 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~-~~~ 173 (182)
|+.+.+++++|+++|+++||+ ||||+++|.++|.++|+++||=+ .||
T Consensus 79 P~~~~~~l~~~~~~~~~lVIG-TTGf~~e~~~~l~~~a~~v~vv~a~Nf 126 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIG-TTGFTEEQLEKLREAAEKVPVVIAPNF 126 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEE-CCCCCHHHHHHHHHHHhhCCEEEeccc
Confidence 999999999999999999999 99999999999999999998754 454
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-17 Score=144.10 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=99.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec------Ccccc--ccHHHHHhcc---CCc-EEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL------GLPVF--NSVAEAKAET---KAN-ASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~------GvPVy--~Sv~ea~~~~---~~D-vaVdfVp 125 (182)
.+||+|.|++||||+++++.+.+.++++| +.++++..|++.. ++|+| ++++++++.. .+| ++|||+.
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv-~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~ 89 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLV-PVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTL 89 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEE-EEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCC
Confidence 35899999999999999999888889999 9999988775433 79999 9999999655 799 9999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc-chh
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 173 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~-~~~ 173 (182)
|++++++++.|+++|+++|++ |||++++++.++.+ ++.+|+-. .||
T Consensus 90 P~a~~~~~~~~~~~g~~~VvG-TTG~~~e~l~~~~~-~~~i~vv~apNf 136 (286)
T PLN02775 90 PDAVNDNAELYCKNGLPFVMG-TTGGDRDRLLKDVE-ESGVYAVIAPQM 136 (286)
T ss_pred hHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHh-cCCccEEEECcc
Confidence 999999999999999999999 99999999998877 56777654 454
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=138.46 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEee-ccCCCCCeE---ec--Cccc------cccHHHHHhccCCc-EEEEeeCh
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGG-VTPKKGGTE---HL--GLPV------FNSVAEAKAETKAN-ASVIYVPP 126 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~Ag-Vdp~~~G~~---i~--GvPV------y~Sv~ea~~~~~~D-vaVdfVpp 126 (182)
||+|.|++||||+++++.+.+.|+++| +. +++...+++ +. ++|| +.+++++.+. .+| ++|||+.|
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv-~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~P 79 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIV-PTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTHP 79 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEE-eeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCCh
Confidence 799999999999999999888889999 87 888765543 11 7999 9999998862 489 99999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch-hcchh
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV-AFLNF 173 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv-~~~~~ 173 (182)
+.++++++.|+++|+++|++ |||++++|+.+|.+.++ +|+ -+.||
T Consensus 80 ~~~~~n~~~~~~~gv~~ViG-TTG~~~~~~~~l~~~~~-i~~l~apNf 125 (275)
T TIGR02130 80 SAVNDNAAFYGKHGIPFVMG-TTGGDREALAKLVADAK-HPAVIAPNM 125 (275)
T ss_pred HHHHHHHHHHHHCCCCEEEc-CCCCCHHHHHHHHHhcC-CCEEEECcc
Confidence 99999999999999999999 99999999999999886 554 44566
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=134.83 Aligned_cols=111 Identities=22% Similarity=0.316 Sum_probs=95.4
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCC---CCeE---e-----cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKK---GGTE---H-----LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~---~G~~---i-----~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+||+|+|++|+||+.+++.+.+ .+++++ |.+|+.. .+++ . .|+|+|++++++. .++|++|||+||
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elv-av~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~--~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLV-AAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVE--TDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhc--CCCCEEEECCCh
Confidence 5899999889999999998885 679999 9898322 1211 1 3699999999983 379999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc--cchhc-chh
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI--LLVAF-LNF 173 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~--ipv~~-~~~ 173 (182)
+.+.+.+++|+++|+++|++ |+|+++++..+|.++|++ +||-. .||
T Consensus 79 ~~~~~~~~~al~~g~~vVig-ttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVG-TTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 99999999999999999999 889999999999999999 88876 555
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=129.41 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=95.1
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+||+|+|++|+||+.+++.+.+ .+++++ +.+|+..... +..++++|++++++++ ++|+++||+||+...++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elv-av~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~~~~~~~~ 78 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELV-AAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPEATLENLE 78 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHHHHHHHHH
Confidence 6899999999999999998875 469999 8887765321 1246889999999987 7999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc
Q 030169 135 EAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 170 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~ 170 (182)
.|+++|+++|++ |+|++++|.++|.++++++||-.
T Consensus 79 ~al~~G~~vvig-ttG~s~~~~~~l~~aa~~~~v~~ 113 (257)
T PRK00048 79 FALEHGKPLVIG-TTGFTEEQLAELEEAAKKIPVVI 113 (257)
T ss_pred HHHHcCCCEEEE-CCCCCHHHHHHHHHHhcCCCEEE
Confidence 999999999999 99999999999999989998764
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-15 Score=136.45 Aligned_cols=107 Identities=26% Similarity=0.306 Sum_probs=94.9
Q ss_pred eeecCCceEEEEccC---CCCchhhhHHHHHhCC--ceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 53 ~li~~~trViVvG~t---GkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
.+|+|.+ |+|+|++ |++|..+.++++++|+ +|+ +|||+. .++.|+|+|+|++|+++ .+|++++++|++
T Consensus 3 ~l~~p~s-iavvGaS~~~~~~g~~~~~~l~~~gf~g~v~--~Vnp~~--~~i~G~~~~~sl~~lp~--~~Dlavi~vp~~ 75 (447)
T TIGR02717 3 HLFNPKS-VAVIGASRDPGKVGYAIMKNLIEGGYKGKIY--PVNPKA--GEILGVKAYPSVLEIPD--PVDLAVIVVPAK 75 (447)
T ss_pred cccCCCE-EEEEccCCCCCchHHHHHHHHHhCCCCCcEE--EECCCC--CccCCccccCCHHHCCC--CCCEEEEecCHH
Confidence 4677755 9999998 7889999999999885 788 999997 36999999999999987 899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHH------HHHHHHHhccc
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHD------MVINFTRVNIL 166 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD------~~~l~~~ak~i 166 (182)
.+.+++++|.+.|++.+|++|+||++.+ ..+|.+++++-
T Consensus 76 ~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~ 120 (447)
T TIGR02717 76 YVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKY 120 (447)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHc
Confidence 9999999999999999999999999854 47888888663
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PLN02522 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-15 Score=139.16 Aligned_cols=109 Identities=20% Similarity=0.332 Sum_probs=94.7
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCC-------ceEEeeccCCC-------CCeEecCccccccHHHHHhcc-CC
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGT-------KMVVGGVTPKK-------GGTEHLGLPVFNSVAEAKAET-KA 117 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~-------~IV~AgVdp~~-------~G~~i~GvPVy~Sv~ea~~~~-~~ 117 (182)
.+++++||.+|+| |....++.|++|++ .+. |-|.|.. -|+++.|+|||+|++|+++++ ++
T Consensus 5 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~ 79 (608)
T PLN02522 5 QLFSRTTQALFYN----YKQLPVQRMLDFDFLCGRETPSVA-GIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTA 79 (608)
T ss_pred eeecCCceeEEEc----CcHHHHHhhhccceeccCCCCeeE-EEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCC
Confidence 5899999999999 78888999998872 244 5578855 244567999999999999887 89
Q ss_pred cEEEEeeChHHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 118 NASVIYVPPPFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 118 DvaVdfVpp~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
|++++||||..++|.+.|++.. ||+.+|++|+|||+.|+.+|.+.|++-
T Consensus 80 ~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~ 129 (608)
T PLN02522 80 DVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARAN 129 (608)
T ss_pred cEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHc
Confidence 9999999999999998888874 999999999999999999999999764
|
|
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-14 Score=111.76 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=98.1
Q ss_pred eecCCceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 54 FVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 54 li~~~trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+++..+|+|+|++ .|-+..+.+.|++.|.+|+ +|||+..|++++|.++|+|++|+++ ++|++.+|.+++.+.
T Consensus 12 iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi--PVNP~~~~~eiLG~k~y~sL~dIpe--~IDiVdvFR~~e~~~ 87 (140)
T COG1832 12 ILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI--PVNPKLAGEEILGEKVYPSLADIPE--PIDIVDVFRRSEAAP 87 (140)
T ss_pred HHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE--eeCcccchHHhcCchhhhcHHhCCC--CCcEEEEecChhhhH
Confidence 45556779999999 6677788999999999999 9999999999999999999999997 899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++++++++.|.+.+|. =.|+.-++..+..+.+..
T Consensus 88 ~i~~eal~~~~kv~W~-QlGi~n~ea~~~~~~aG~ 121 (140)
T COG1832 88 EVAREALEKGAKVVWL-QLGIRNEEAAEKARDAGL 121 (140)
T ss_pred HHHHHHHhhCCCeEEE-ecCcCCHHHHHHHHHhCc
Confidence 9999999999999998 899999998888888766
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=105.73 Aligned_cols=98 Identities=22% Similarity=0.236 Sum_probs=75.2
Q ss_pred eEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 60 RVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
+|+|+|++ ++.|..+.+.+++.|.+|+ +|+|+. +++.|+|+|+|++|.++ ++|++++++||..+.+++++|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~--~Vnp~~--~~i~G~~~y~sl~e~p~--~iDlavv~~~~~~~~~~v~~~ 75 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVY--PVNPKG--GEILGIKCYPSLAEIPE--PIDLAVVCVPPDKVPEIVDEA 75 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEE--EESTTC--SEETTEE-BSSGGGCSS--T-SEEEE-S-HHHHHHHHHHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEE--EECCCc--eEECcEEeeccccCCCC--CCCEEEEEcCHHHHHHHHHHH
Confidence 69999998 8889999999999999999 999998 57999999999999545 899999999999999999999
Q ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 137 MEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 137 ie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+.|++.||. -.| .+..++.+++++-.
T Consensus 76 ~~~g~~~v~~-~~g---~~~~~~~~~a~~~g 102 (116)
T PF13380_consen 76 AALGVKAVWL-QPG---AESEELIEAAREAG 102 (116)
T ss_dssp HHHT-SEEEE--TT---S--HHHHHHHHHTT
T ss_pred HHcCCCEEEE-Ecc---hHHHHHHHHHHHcC
Confidence 9999999999 444 45555555555543
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-14 Score=117.11 Aligned_cols=108 Identities=23% Similarity=0.329 Sum_probs=96.9
Q ss_pred eeecCCceEEEEccCCCCchhhhH--HHHHhCCceEEee--ccCCCCCeEecCcccccc--HHHHHhccCCcEEEEeeCh
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTE--QAIEYGTKMVVGG--VTPKKGGTEHLGLPVFNS--VAEAKAETKANASVIYVPP 126 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k--~~~~~g~~IV~Ag--Vdp~~~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp 126 (182)
+..++.++|+++|+ |++|+++.. .+.+++++|+ +. ++|.+.|+++.++|||+- +++.++++++|++++.||.
T Consensus 79 Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv-~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 79 LGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIV-AAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred hCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEE-EEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 57889999999999 999999866 6668899999 74 899999999999999986 9999998899999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHH
Q 030169 127 PFAAAAIMEAMEAELDLVVCIT-------EGIPQHDMVINFTR 162 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iT-------eG~~~eD~~~l~~~ 162 (182)
..||++++..+++||+.|+++| +|+.+|.++.-.++
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlNFtPv~l~~pe~V~V~~iDLt~eL 199 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILNFTPVRLQVPEGVIVENIDLTAEL 199 (211)
T ss_pred HHHHHHHHHHHHcCCceEEeccceEecCCCCcEEEEeehHHHH
Confidence 9999999999999999999998 78888877665554
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-10 Score=85.88 Aligned_cols=106 Identities=22% Similarity=0.269 Sum_probs=87.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
.||.|+|+ |.+|+.+.+.+.+. +++++ |.+|+..... +..|+|+|+|++|+++..++|++++.+|+....+.
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~-~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~ 78 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVV-AVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEI 78 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEE-EEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEE-EEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHH
Confidence 48999999 99999999877754 58888 8888875221 13589999999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+++|+++|+++++==--..+.+|..+|.+++++-
T Consensus 79 ~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 79 AKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp HHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 9999999995544322467999999999999653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=103.59 Aligned_cols=97 Identities=26% Similarity=0.381 Sum_probs=87.3
Q ss_pred eeecCCceEEEEccC---CCCchhhhHHHHHhC-CceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 53 ~li~~~trViVvG~t---GkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.++.|+. |+|+|++ ++.|+.+.++++++| ++|+ +|+|+.. ++.|+++|++++++++ .+|++++.||+..
T Consensus 6 ~~~~p~s-vavigas~~~~~vg~~i~~nL~~~g~g~i~--PVnp~~~--~v~G~~ay~s~~~lp~--~~dlav~~v~~~~ 78 (598)
T COG1042 6 RLFAPKS-IAVIGASERPGKLGYEILRNLLEYGQGKIY--PVNPKYD--EVLGVKAYTSVADLPD--APDLAVIVVPAKV 78 (598)
T ss_pred hhhCCce-EEEeeccCCcchhHHHHHHHHHhcCCCceE--ecCcccc--ccccccccchHhhCCC--CCCeeEEEechhh
Confidence 4677765 9999999 456778888999988 8999 9999994 6999999999999999 8999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD~ 156 (182)
+.+++++|.+.|++.+|+++.||.+--.
T Consensus 79 ~~~i~~~~~~kGv~~~i~is~gf~e~~~ 106 (598)
T COG1042 79 VPEIVHELGEKGVKGAIVISAGFREAGE 106 (598)
T ss_pred hHHHHHHhhccCCceEEEechhhhHHhh
Confidence 9999999999999999999999987554
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-09 Score=89.57 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=81.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----Ee-cCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----EH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----~i-~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+||.|+|+ |+||+.+++.+.+. +.+++ +.+++..... .. .++++|++++++ ..++|++++++|+..+.+.
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~-~v~~~~~~~~~~~~~~~~~~~~~~d~~~l--~~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVD-WVIVPEHSIDAVRRALGEAVRVVSSVDAL--PQRPDLVVECAGHAALKEH 77 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEE-EEEEcCCCHHHHhhhhccCCeeeCCHHHh--ccCCCEEEECCCHHHHHHH
Confidence 58999999 99999999988865 58888 6654433211 11 268999999998 3479999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCC-CCH-HHHHHHHHHhcccc
Q 030169 133 IMEAMEAELDLVVCITEG-IPQ-HDMVINFTRVNILL 167 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG-~~~-eD~~~l~~~ak~ip 167 (182)
+.+++++|+++++. +.| +.. +...+|.++|++-.
T Consensus 78 ~~~aL~aGk~Vvi~-s~~Al~d~~~~~~L~~~A~~~g 113 (265)
T PRK13303 78 VVPILKAGIDCAVI-SVGALADEALRERLEQAAEAGG 113 (265)
T ss_pred HHHHHHcCCCEEEe-ChHHhcCHHHHHHHHHHHHHCC
Confidence 99999999999986 666 553 44577888886643
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.7e-09 Score=85.35 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=83.5
Q ss_pred eecCCceEEEEccCCCCchhhhHHH--HHhCCceEEeecc--CCCCCeEecCccccc--cHHHHHhccCCcEEEEeeChH
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVVGGVT--PKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~--~~~g~~IV~AgVd--p~~~G~~i~GvPVy~--Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
..+...+|+|+|+ |.+|+.+.+.. .+.|++++ |-+| |.+.|..+.|+||++ +++++++++++|++++.+|..
T Consensus 80 ~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~iv-gv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 80 GLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIV-AAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEE-EEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 3445678999999 99999998853 25679999 7665 456666677888874 477777777899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHH
Q 030169 128 FAAAAIMEAMEAELDLVVCIT-------EGIPQHDMVINFTR 162 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iT-------eG~~~eD~~~l~~~ 162 (182)
...++++.++++|++.|++++ +|+.+++.....++
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l 199 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVEL 199 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHH
Confidence 999999999999999999975 56655555444444
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=84.74 Aligned_cols=103 Identities=10% Similarity=0.081 Sum_probs=83.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+||.|+|+ |+||+.+++.+.+. +.+++ +.+|+...-- +..+.++|.+++|+++ ++|++++.+|+....+.
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv-~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~ 77 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELY-AFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEV 77 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEE-EEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHH
Confidence 58999998 99999999988764 57888 7777764210 1236889999999885 89999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCC--CHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGI--PQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~--~~eD~~~l~~~ak~i 166 (182)
+++++++|.++++. +.|- ..+...+|.++|++-
T Consensus 78 ~~~al~~Gk~Vvv~-s~gAl~d~~~~~~L~~aA~~~ 112 (265)
T PRK13304 78 VPKSLENGKDVIIM-SVGALADKELFLKLYKLAKEN 112 (265)
T ss_pred HHHHHHcCCCEEEE-chHHhcCHHHHHHHHHHHHHc
Confidence 99999999887775 6653 677788999998764
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-08 Score=86.46 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=84.9
Q ss_pred CCceEEEEccCCCCch-hhhHHHHH-hCCceEEeeccCCCC--CeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGT-FHTEQAIE-YGTKMVVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~-~v~k~~~~-~g~~IV~AgVdp~~~--G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+..||.|+|+ |.+|+ .+.+.+.. .+.+++ |-.|+... .....+.++|++++|+++..++|++++.+|+....+.
T Consensus 3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~ 80 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELA-AVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPL 80 (346)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCCEEE-EEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 3479999999 99998 46676654 468898 77776531 1123467899999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.+|+++|+++++==-=..+.+|..+|.++|++
T Consensus 81 ~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 81 AKAALEAGKHVVVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred HHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999998876432334788999999999965
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.3e-08 Score=82.78 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=85.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCe----EecCcc-ccccHHHHHhccCCcEEEEeeChHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGT----EHLGLP-VFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~----~i~GvP-Vy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
+..||.|+|+.|.+++.+...+.+.+ ++++ |.+|+....- +..++| +|.|++++++..++|+++|.+|+...
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~v-av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELV-AVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEE-EEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 45799999995466677888888765 5888 8777766321 124675 99999999997779999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+.+..|+++|+++++==-=..+.+|.++|.++|++-
T Consensus 81 ~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 81 AELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999997763111237899999999999764
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-07 Score=80.25 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=79.3
Q ss_pred CceEEEEccCCCCchhhhHHHHH--hCCceEEeeccCCCCCe-E---ecC-ccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE--YGTKMVVGGVTPKKGGT-E---HLG-LPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~--~g~~IV~AgVdp~~~G~-~---i~G-vPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+||.|+|+ |++|+.+++.+.+ .+.+++ +-.++..... + ..| .++|.+++|+.+ ++|++++.+|+....
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~-aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~~~h~ 81 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLS-AVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPASVLR 81 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEE-EEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCcHHHH
Confidence 378999999 9999999998875 468887 6666643111 1 123 468999999987 799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.++.++++|+++++. +.| ...+..+|.+++++
T Consensus 82 e~~~~aL~aGk~Vi~~-s~g-al~~~~~L~~~A~~ 114 (271)
T PRK13302 82 AIVEPVLAAGKKAIVL-SVG-ALLRNEDLIDLARQ 114 (271)
T ss_pred HHHHHHHHcCCcEEEe-cch-hHHhHHHHHHHHHH
Confidence 9999999999887764 544 33467788888765
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-07 Score=80.51 Aligned_cols=106 Identities=10% Similarity=0.019 Sum_probs=81.6
Q ss_pred ceEEEEccCCCCc-hhhhHHHHH--hCCceEEeeccCCCC----CeEecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNG-TFHTEQAIE--YGTKMVVGGVTPKKG----GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG-~~v~k~~~~--~g~~IV~AgVdp~~~----G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.||.|+|+ |.++ +.+...+.. .+.+++ |-.|+... .+...++++|++.+|+++..++|++++.+|+....+
T Consensus 2 irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~ 79 (344)
T PRK10206 2 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVA-HIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 79 (344)
T ss_pred eEEEEECC-CHHHhheehhhHhcCCCCEEEE-EEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence 48999999 8865 456665543 358898 77776431 112335889999999998778999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+.+|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 80 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 114 (344)
T PRK10206 80 YAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSK 114 (344)
T ss_pred HHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHh
Confidence 99999999977654212257899999999999653
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.1e-07 Score=79.73 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=68.2
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCC---------CeE-------------ecCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKG---------GTE-------------HLGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~---------G~~-------------i~GvPVy~Sv~ea~~~~ 115 (182)
.||+|.|+ |+||+.+++.+.+ .+++++ |..++... |-. ..+++++.+.+++.+
T Consensus 2 ikVaI~G~-GrIGr~va~al~~~~d~eLv-av~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~-- 77 (341)
T PRK04207 2 IKVGVNGY-GTIGKRVADAVAAQPDMELV-GVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE-- 77 (341)
T ss_pred eEEEEECC-CHHHHHHHHHHhcCCCcEEE-EEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--
Confidence 58999999 9999999998774 569999 87764321 100 136889999998886
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 116 KANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 116 ~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++|++++|+|+....+.+..++++|+++|+.
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~ 108 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYEKAGVKAIFQ 108 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHHHCCCEEEEc
Confidence 7999999999999999999999999666655
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.9e-07 Score=79.37 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=83.0
Q ss_pred CceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeEecCcccccc--HHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTEHLGLPVFNS--VAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
..||+|+|+ |++|+.+.+.+.+ .+++++ |.+++...+..-.++++|.+ .+++.. ++|++++.+|.....+.+.
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELV-gV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~ 78 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELV-GVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQA 78 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEE-EEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHH
Confidence 479999999 9999999998875 479999 77777642211124566653 555444 7999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCC-HHHHHHHHHHhcc-cchhc
Q 030169 135 EAMEAELDLVVCITEGIP-QHDMVINFTRVNI-LLVAF 170 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~-~eD~~~l~~~ak~-ipv~~ 170 (182)
.++++|+++|...-.+.. .+..++|.++||+ .-++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsv 116 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSV 116 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 999999999987655553 5778899999985 34443
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=78.44 Aligned_cols=107 Identities=19% Similarity=0.080 Sum_probs=79.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh----------CCceEEeeccCCC-----CCeE----------ecCcccc------cc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY----------GTKMVVGGVTPKK-----GGTE----------HLGLPVF------NS 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~----------g~~IV~AgVdp~~-----~G~~----------i~GvPVy------~S 107 (182)
.||+|+|+ |.+|+.+++.+.+. +++|+ |.+|+.. .|-. ...++.| .+
T Consensus 3 i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vv-ai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 3 MKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVV-AIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred EEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEE-EEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 68999998 99999999987643 57888 7777531 1210 1123444 37
Q ss_pred HHHHHhccCCcEEEEeeChHH-----HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 108 VAEAKAETKANASVIYVPPPF-----AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVpp~a-----v~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
++|+++..++|++++.+|+.. +.+.+.+|+++|+++|.. +++.-..+..+|.++|++--+
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta-NK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS-NKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC-CcHHHHhhHHHHHHHHHHcCC
Confidence 899887678999999998643 589999999999988776 666666677889999977544
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-06 Score=76.89 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=79.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEee----Ch
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYV----PP 126 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfV----pp 126 (182)
+..||+|+|+ .+|+.+++.+.+. +++++ |-+|+...-- +..|+|.|.+++|+++ ++|+.++++ |+
T Consensus 2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLv-aV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~ 76 (343)
T TIGR01761 2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELA-GILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVG 76 (343)
T ss_pred CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEE-EEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCC
Confidence 3578999998 4899999887753 58999 8788764211 1248999999999997 677777776 45
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
....+.+.+|+++|+++++ =.=+..+|.++|.++|++
T Consensus 77 ~~H~e~a~~aL~aGkHVL~--EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 77 GQGSALARALLARGIHVLQ--EHPLHPRDIQDLLRLAER 113 (343)
T ss_pred ccHHHHHHHHHhCCCeEEE--cCCCCHHHHHHHHHHHHH
Confidence 7889999999999977653 333457999999999966
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-06 Score=75.65 Aligned_cols=104 Identities=21% Similarity=0.128 Sum_probs=72.8
Q ss_pred ceEEEEccCCCCchhhhHHHHH--------hC--CceEEeeccCCC-----CCeEe----------cCcccc-------c
Q 030169 59 TRVICQGITGKNGTFHTEQAIE--------YG--TKMVVGGVTPKK-----GGTEH----------LGLPVF-------N 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~--------~g--~~IV~AgVdp~~-----~G~~i----------~GvPVy-------~ 106 (182)
.+|+|+|+ |.-|+.+++.+.+ +| ++|+ +-.|... .|-+. ..+.-| +
T Consensus 3 i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~Vv-aV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 3 VKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVV-SITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEE-EEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 68999999 9999998887765 56 6677 5444321 11000 011112 1
Q ss_pred -cHHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 107 -SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 107 -Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.+|+++..++|++|+++++..+.+....++++|+++|.+ +.|.--+...+|.++|++
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVta-nK~~la~~~~el~~la~~ 139 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTS-NKPPIAFHYDELLDLANE 139 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEEC-CHHHHHhCHHHHHHHHHH
Confidence 6778776568999999999999999999999999999988 777333444566666544
|
|
| >PRK06091 membrane protein FdrA; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.5e-06 Score=78.00 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=57.8
Q ss_pred CccccccHHHHHhcc-CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 101 GLPVFNSVAEAKAET-KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 101 GvPVy~Sv~ea~~~~-~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+|.|+++.++.+.. ++|++++++|+..+.+++++|+++|. .++++|+||+.+++.+|.++|++-
T Consensus 101 ~~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G~-~viI~S~gfg~~~E~~L~e~Ar~~ 166 (555)
T PRK06091 101 SLTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNL-NVMMFSDNVTLEDEIRLKTRAREK 166 (555)
T ss_pred CCcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcCC-eEEEEcCCCCHHHHHHHHHHHHHc
Confidence 588999999988654 57999999999999999999999995 566779999999999999999653
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=73.57 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=80.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHh----------CCceEEeeccCCCCC---eEecCccccccHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVVGGVTPKKGG---TEHLGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~----------g~~IV~AgVdp~~~G---~~i~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
..||.|+|+ |.+|+.+++.+.+. +++++ +-+++...- ....+..++++.+++++..++|++++.+
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~-~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~t 80 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIK-KVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELM 80 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEE-EEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECC
Confidence 478999998 99999988766432 46777 655543211 1123567889999998766899999998
Q ss_pred Ch-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 125 PP-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 125 pp-~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
++ ..+.+.+.+|+++|+++|.. -.....++..+|.++|++--+
T Consensus 81 g~~~~~~~~~~~aL~~GkhVVta-NK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 81 GGIEPARELILKALEAGKHVVTA-NKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CCchHHHHHHHHHHHCCCeEEEc-CHHHHHHHHHHHHHHHHHcCC
Confidence 65 67799999999999887753 345566788999999977544
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-06 Score=64.54 Aligned_cols=99 Identities=15% Similarity=0.023 Sum_probs=73.8
Q ss_pred ccCCCCchhhhHHHHHh----CCceEEeeccCCCCCe------EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 65 GITGKNGTFHTEQAIEY----GTKMVVGGVTPKKGGT------EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 65 G~tGkmG~~v~k~~~~~----g~~IV~AgVdp~~~G~------~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
|+ |.+|+.+++.+.+. +++++ +-.+.. ..- ...+.+++.+++++++..++|++|+.++++.+.+...
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~-~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~ 77 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVV-GVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYE 77 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEE-EEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEE-EEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHH
Confidence 55 99999999988853 67888 666665 110 1236788899999988668999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCC--CHHHHHHHHHHhcccc
Q 030169 135 EAMEAELDLVVCITEGI--PQHDMVINFTRVNILL 167 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~--~~eD~~~l~~~ak~ip 167 (182)
.++++|+++|.. ..|- +.....+|.++|++--
T Consensus 78 ~~L~~G~~VVt~-nk~ala~~~~~~~L~~~A~~~g 111 (117)
T PF03447_consen 78 KALERGKHVVTA-NKGALADEALYEELREAARKNG 111 (117)
T ss_dssp HHHHTTCEEEES--HHHHHSHHHHHHHHHHHHHHT
T ss_pred HHHHCCCeEEEE-CHHHhhhHHHHHHHHHHHHHcC
Confidence 999999999986 5333 3377788888887644
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.1e-05 Score=79.69 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=83.6
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh-CCc-------------eEEeeccCCCCCeE---ecC---ccc-cccHHHHHhc
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTK-------------MVVGGVTPKKGGTE---HLG---LPV-FNSVAEAKAE 114 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~-g~~-------------IV~AgVdp~~~G~~---i~G---vPV-y~Sv~ea~~~ 114 (182)
.+..||+|+|+ |++|+.+++.+.+. +.+ +.||..++.....- ..+ +++ +.+.+++.+.
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 34568999999 99999999988754 344 33344444331110 113 566 7777776542
Q ss_pred -cCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhcch
Q 030169 115 -TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLN 172 (182)
Q Consensus 115 -~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~~~ 172 (182)
.++|++|..+|+....++++.|+++|++.+. +....+++.+|.+.|++--|.+.|
T Consensus 646 v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~---eky~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKACIELKKHLVT---ASYVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHHHHHcCCCEEE---CcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2699999999999999999999999998754 348899999999999887776665
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.7e-05 Score=64.49 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=74.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
++||.|+|+ |.||..+.+.+.+.+ -+++ +.++.... .++....+..++.+ ++|++++.+||....+++
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~--~~~~~~~~---~~~~~~~~~~~~~~--~~D~Vilavkp~~~~~vl 74 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIY--YHTPSKKN---TPFVYLQSNEELAK--TCDIIVLAVKPDLAGKVL 74 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEE--EECCChhc---CCeEEeCChHHHHH--hCCEEEEEeCHHHHHHHH
Confidence 478999998 999999999988765 2366 66765422 23445567777776 789999999999999999
Q ss_pred HHHHHc-CCCEEEEeCCCCCHHHHHHHHH
Q 030169 134 MEAMEA-ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 134 ~eAie~-GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
.+.... +-+.||.+..|++.+++.++..
T Consensus 75 ~~i~~~l~~~~iIS~~aGi~~~~l~~~~~ 103 (260)
T PTZ00431 75 LEIKPYLGSKLLISICGGLNLKTLEEMVG 103 (260)
T ss_pred HHHHhhccCCEEEEEeCCccHHHHHHHcC
Confidence 987643 2357788899999998888754
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.6e-06 Score=64.49 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=71.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
+||.++|. |+||+.+++.+.+.|.++. +.|+....- + ..|..+.+|++|+.+ .+|+++..+|... +.+++.
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~--~~d~~~~~~~~~~~~g~~~~~s~~e~~~--~~dvvi~~v~~~~~v~~v~~ 76 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVT--VYDRSPEKAEALAEAGAEVADSPAEAAE--QADVVILCVPDDDAVEAVLF 76 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEE--EEESSHHHHHHHHHTTEEEESSHHHHHH--HBSEEEE-SSSHHHHHHHHH
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEE--eeccchhhhhhhHHhhhhhhhhhhhHhh--cccceEeecccchhhhhhhh
Confidence 68999999 9999999999999999988 566543111 1 147999999999999 6899999999854 556655
Q ss_pred H--HHHc-CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 E--AMEA-ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 e--Aie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
. .+.+ .-..+++-++-.+.++..++.+..+.
T Consensus 77 ~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~ 110 (163)
T PF03446_consen 77 GENILAGLRPGKIIIDMSTISPETSRELAERLAA 110 (163)
T ss_dssp CTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHH
T ss_pred hhHHhhccccceEEEecCCcchhhhhhhhhhhhh
Confidence 5 4543 34555555888888888888887653
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.2e-05 Score=69.80 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=69.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eE--ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TE--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~ 133 (182)
.++|.|+|+ |+||+.+++.+.+.|.+++ .+.++.... .. ..|+.+. +.+|+.+ ++|++++.+||. ......
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~~Vi-v~~~~~~~~~~~a~~~Gv~~~-s~~ea~~--~ADiVvLaVpp~~~~~~v~ 77 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGLNVI-VGLRKGGASWKKATEDGFKVG-TVEEAIP--QADLIMNLLPDEVQHEVYE 77 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCCeEE-EEECcChhhHHHHHHCCCEEC-CHHHHHh--cCCEEEEeCCcHhHHHHHH
Confidence 467999998 9999999999999998877 566654311 01 2367665 4788777 799999999999 444433
Q ss_pred HHHHHc-CCCEEEEeCCCCCHHHHHHH
Q 030169 134 MEAMEA-ELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 134 ~eAie~-GIk~VV~iTeG~~~eD~~~l 159 (182)
.+.... .-..+|.+..||+.++....
T Consensus 78 ~ei~~~l~~g~iVs~aaG~~i~~~~~~ 104 (314)
T TIGR00465 78 AEIQPLLKEGKTLGFSHGFNIHFVQIV 104 (314)
T ss_pred HHHHhhCCCCcEEEEeCCccHhhcccc
Confidence 334332 11247888999999987653
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.9e-05 Score=65.50 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=74.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
++|.|+|+ |.||+.++..+.+.| .++. .+++.....+ ..|+.+.++.+++.+ ++|++++.+||....+
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~v~--v~~r~~~~~~~~~~~~g~~~~~~~~~~~~--~advVil~v~~~~~~~ 77 (267)
T PRK11880 3 KKIGFIGG-GNMASAIIGGLLASGVPAKDII--VSDPSPEKRAALAEEYGVRAATDNQEAAQ--EADVVVLAVKPQVMEE 77 (267)
T ss_pred CEEEEEec-hHHHHHHHHHHHhCCCCcceEE--EEcCCHHHHHHHHHhcCCeecCChHHHHh--cCCEEEEEcCHHHHHH
Confidence 57999998 999999999988776 4454 6666531111 126778888888877 7999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
+++++....-+.|+-++.|++.+++.++.
T Consensus 78 v~~~l~~~~~~~vvs~~~gi~~~~l~~~~ 106 (267)
T PRK11880 78 VLSELKGQLDKLVVSIAAGVTLARLERLL 106 (267)
T ss_pred HHHHHHhhcCCEEEEecCCCCHHHHHHhc
Confidence 99887654225777789999988777654
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.5e-05 Score=67.62 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=75.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC----ceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~----~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+||.++|+ |+||..+++.+.+.|. +|+ +.|+....-+ ..|+.++++.+|+.+ ++|++++.+||..+.
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~--v~~r~~~~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLavkP~~~~ 77 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQII--CSDLNVSNLKNASDKYGITITTNNNEVAN--SADILILSIKPDLYS 77 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEE--EECCCHHHHHHHHHhcCcEEeCCcHHHHh--hCCEEEEEeChHHHH
Confidence 47999998 9999999999988763 466 6666442111 136777788888877 799999999999999
Q ss_pred HHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030169 131 AAIMEAMEA--ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 131 ~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+++++.... +=+.||=+..|++.+++.++..
T Consensus 78 ~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 78 SVINQIKDQIKNDVIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcC
Confidence 998876532 2357888899999999998763
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.2e-05 Score=65.20 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=74.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC----ceEEeec-cCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVVGGV-TPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~----~IV~AgV-dp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+||.++|+ |.||..+++.+.+.|. +|+ .. ++...-.+ ..|+.+.++..|+.+ ++|++++.+||..+.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~--v~~~r~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVil~v~~~~~~ 75 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRIS--TADDSNPARRDVFQSLGVKTAASNTEVVK--SSDVIILAVKPQVVK 75 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEE--EEeCCCHHHHHHHHHcCCEEeCChHHHHh--cCCEEEEEECcHHHH
Confidence 57999997 9999999999998876 777 44 55432111 137888889988887 789999999999999
Q ss_pred HHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030169 131 AAIMEAMEA--ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 131 ~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+++.+.... .=+.||-++.|++.+++.++..
T Consensus 76 ~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~ 108 (266)
T PLN02688 76 DVLTELRPLLSKDKLLVSVAAGITLADLQEWAG 108 (266)
T ss_pred HHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcC
Confidence 998776543 1245666689999998886653
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.5e-05 Score=62.83 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=73.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC---Cc-eEEeeccCCC--CCeE---ecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG---TK-MVVGGVTPKK--GGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g---~~-IV~AgVdp~~--~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
+.+||.|+|+ |+||+.+++.+.+.+ .+ ++ .+++.. ..+. ..++.++.+.+++++ ++|++++.+|+.
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DiViiavp~~ 77 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEII--VSNRSNVEKLDQLQARYNVSTTTDWKQHVT--SVDTIVLAMPPS 77 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEE--EECCCCHHHHHHHHHHcCcEEeCChHHHHh--cCCEEEEecCHH
Confidence 3578999998 999999999887655 33 54 344321 0111 136778889999887 799999999999
Q ss_pred HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHH
Q 030169 128 FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 128 av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~ 160 (182)
...+++++.... .-+.||.++.|++.+++.+..
T Consensus 78 ~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 78 AHEELLAELSPLLSNQLVVTVAAGIGPSYLEERL 111 (245)
T ss_pred HHHHHHHHHHhhccCCEEEEECCCCCHHHHHHHc
Confidence 999998876532 225788889999999877654
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.8e-05 Score=60.12 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=65.7
Q ss_pred eEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCC-CCeEec-Ccc---------ccccHHHHHhccCCcEEEEeeChH
Q 030169 60 RVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKK-GGTEHL-GLP---------VFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~-~G~~i~-GvP---------Vy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
||.|+|+||..|+.+.+.+.+. .++++ .-+.... .|+.+. ..| +-+.-.+..+ ++|+++..+|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELV-ALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELS--DVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEE-EEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHT--TESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEE-EeeeeccccCCeeehhccccccccceeEeecchhHhh--cCCEEEecCchh
Confidence 7999999999999999988864 48888 6566555 565432 223 2221122234 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHD 155 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD 155 (182)
...+.+..+++.|+++ |=.+.-+..++
T Consensus 78 ~~~~~~~~~~~~g~~V-iD~s~~~R~~~ 104 (121)
T PF01118_consen 78 ASKELAPKLLKAGIKV-IDLSGDFRLDD 104 (121)
T ss_dssp HHHHHHHHHHHTTSEE-EESSSTTTTST
T ss_pred HHHHHHHHHhhCCcEE-EeCCHHHhCCC
Confidence 9999999999999944 44466665544
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.5e-05 Score=64.77 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=72.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCe------EecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGT------EHLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~------~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+||.|+|+ |.||+.+++.+.+.| .+|+ ++++..... ...++.+..+.+++.+ ++|++++.+||..
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~--~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~--~aDvVilavpp~~ 76 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEII--LYSSSKNEHFNQLYDKYPTVELADNEAEIFT--KCDHSFICVPPLA 76 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEE--EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHh--hCCEEEEecCHHH
Confidence 46999998 999999999988776 4677 555532110 0123556678888777 7999999999999
Q ss_pred HHHHHHHHHH---cCCCEEEEeCCCCCHHHHHHHH
Q 030169 129 AAAAIMEAME---AELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 129 v~~a~~eAie---~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
+.+++.+... .+ +.||.++.|++.+++.++.
T Consensus 77 ~~~vl~~l~~~l~~~-~~ivS~~aGi~~~~l~~~~ 110 (277)
T PRK06928 77 VLPLLKDCAPVLTPD-RHVVSIAAGVSLDDLLEIT 110 (277)
T ss_pred HHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHHHc
Confidence 9999987754 34 3567779999999988865
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.9e-05 Score=63.60 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=73.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCe--E---ecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGT--E---HLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~--~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.+||.++|+ |+||+.+++.+.+.| .+|+ ..++..... . ..|+.+.++..|+.+ ++|++++.+||..
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~--v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~--~aDvVilav~p~~ 77 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQIT--VSNRSNETRLQELHQKYGVKGTHNKKELLT--DANILFLAMKPKD 77 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEE--EECCCCHHHHHHHHHhcCceEeCCHHHHHh--cCCEEEEEeCHHH
Confidence 368999997 999999999998776 5566 455532111 1 126777888888877 7899999999999
Q ss_pred HHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHH
Q 030169 129 AAAAIMEAMEA--ELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 129 v~~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~ 160 (182)
..+++.+.... .=+.||-+..|++.+++.++.
T Consensus 78 ~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~ 111 (279)
T PRK07679 78 VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 99998776543 124566667999999888865
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.8e-05 Score=68.36 Aligned_cols=95 Identities=25% Similarity=0.318 Sum_probs=71.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
.++|.|+|+ |+||+.+++.+.+.|.+++ .+..+..... +..|+.+. +++|+.+ ++|++++.+|+....+++.
T Consensus 17 gktIgIIG~-GsmG~AlA~~L~~sG~~Vv-v~~r~~~~s~~~A~~~G~~~~-s~~eaa~--~ADVVvLaVPd~~~~~V~~ 91 (330)
T PRK05479 17 GKKVAIIGY-GSQGHAHALNLRDSGVDVV-VGLREGSKSWKKAEADGFEVL-TVAEAAK--WADVIMILLPDEVQAEVYE 91 (330)
T ss_pred CCEEEEEee-HHHHHHHHHHHHHCCCEEE-EEECCchhhHHHHHHCCCeeC-CHHHHHh--cCCEEEEcCCHHHHHHHHH
Confidence 467999999 9999999999999999988 5544322111 12367666 8899888 7999999999999888874
Q ss_pred HHHHcCC--CEEEEeCCCCCHHHHH
Q 030169 135 EAMEAEL--DLVVCITEGIPQHDMV 157 (182)
Q Consensus 135 eAie~GI--k~VV~iTeG~~~eD~~ 157 (182)
+.+...+ ..++.++.|++.+...
T Consensus 92 ~~I~~~Lk~g~iL~~a~G~~i~~~~ 116 (330)
T PRK05479 92 EEIEPNLKEGAALAFAHGFNIHFGQ 116 (330)
T ss_pred HHHHhcCCCCCEEEECCCCChhhce
Confidence 4443333 3456789999998864
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-05 Score=65.98 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=67.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
++.+|+|+|+ |++|+.++.+|.+.|.+++ -|..++.... +..|+.|+ +++|+.+ +.|++++.+|-....++.
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~-Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~--~aDvV~~L~PD~~q~~vy 77 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVI-VGLREGSASWEKAKADGFEVM-SVAEAVK--KADVVMLLLPDEVQPEVY 77 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC-EEE-EEE-TTCHHHHHHHHTT-ECC-EHHHHHH--C-SEEEE-S-HHHHHHHH
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCCCEE-EEecCCCcCHHHHHHCCCeec-cHHHHHh--hCCEEEEeCChHHHHHHH
Confidence 4578999999 9999999999999999998 5555544111 13588887 7888888 799999999999999998
Q ss_pred HHHHHcCCC--EEEEeCCCCCHH
Q 030169 134 MEAMEAELD--LVVCITEGIPQH 154 (182)
Q Consensus 134 ~eAie~GIk--~VV~iTeG~~~e 154 (182)
++-++-..+ .+++++-||..+
T Consensus 78 ~~~I~p~l~~G~~L~fahGfni~ 100 (165)
T PF07991_consen 78 EEEIAPNLKPGATLVFAHGFNIH 100 (165)
T ss_dssp HHHHHHHS-TT-EEEESSSHHHH
T ss_pred HHHHHhhCCCCCEEEeCCcchhh
Confidence 888876544 478889998875
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=3e-05 Score=68.99 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=69.2
Q ss_pred CceEEEEccCCCCchhhhHHHHH-hCCceEEeec--cCCCCCe---EecCccc-cccHHHHHhc---cCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGV--TPKKGGT---EHLGLPV-FNSVAEAKAE---TKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgV--dp~~~G~---~i~GvPV-y~Sv~ea~~~---~~~DvaVdfVpp~ 127 (182)
..||.|+| +|+.|+.+...+.+ .+++++ +-+ ||...|. ...|+|. |++++++++. .++|++++.+|+.
T Consensus 4 klrVAIIG-tG~IGt~hm~~l~~~~~velv-AVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 4 KLKVAIIG-SGNIGTDLMIKILRSEHLEPG-AMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCeEEEEc-CcHHHHHHHHHHhcCCCcEEE-EEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 57899999 59999998776664 458887 654 5543331 2358998 5889999875 4799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q 030169 128 FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~ 146 (182)
...+.+..+.++|+++|-.
T Consensus 82 ~H~e~a~~a~eaGk~VID~ 100 (302)
T PRK08300 82 AHVRHAAKLREAGIRAIDL 100 (302)
T ss_pred HHHHHHHHHHHcCCeEEEC
Confidence 9999999999999888755
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.3e-05 Score=68.91 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=69.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEec----Ccc-----ccccHHHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHL----GLP-----VFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~----GvP-----Vy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+||+|+|++|.+|+.+++.+.+. +.+++ +-.++...|+.+. .++ .|.++++. ...++|++++.+|...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv-~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIV-AVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE-ILAGADVVFLALPHGV 80 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEE-EEECccccCcchHHhCcccccccCceeecCCHH-HhcCCCEEEECCCcHH
Confidence 68999999999999999988865 68888 7676544443221 122 45555543 2237999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHD 155 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD 155 (182)
..+.+.+++++|+++|=. +..|..++
T Consensus 81 ~~~~v~~a~~aG~~VID~-S~~fR~~~ 106 (343)
T PRK00436 81 SMDLAPQLLEAGVKVIDL-SADFRLKD 106 (343)
T ss_pred HHHHHHHHHhCCCEEEEC-CcccCCCC
Confidence 999999999999766654 66666654
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=4e-05 Score=69.20 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=72.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+..+|.|+|. |+||+.+++++...|++|+ ++.++.+... ...|+.++ +++|+.+ ..|++++.+|-+...++..
T Consensus 15 kgKtVGIIG~-GsIG~amA~nL~d~G~~Vi-V~~r~~~s~~~A~~~G~~v~-sl~Eaak--~ADVV~llLPd~~t~~V~~ 89 (335)
T PRK13403 15 QGKTVAVIGY-GSQGHAQAQNLRDSGVEVV-VGVRPGKSFEVAKADGFEVM-SVSEAVR--TAQVVQMLLPDEQQAHVYK 89 (335)
T ss_pred CcCEEEEEeE-cHHHHHHHHHHHHCcCEEE-EEECcchhhHHHHHcCCEEC-CHHHHHh--cCCEEEEeCCChHHHHHHH
Confidence 3467999999 9999999999999999998 6656543211 12367665 8999999 8999999999877767765
Q ss_pred HHHHcCC--CEEEEeCCCCCHHHH
Q 030169 135 EAMEAEL--DLVVCITEGIPQHDM 156 (182)
Q Consensus 135 eAie~GI--k~VV~iTeG~~~eD~ 156 (182)
+.+.... ..+++++-||..|--
T Consensus 90 ~eil~~MK~GaiL~f~hgfni~~~ 113 (335)
T PRK13403 90 AEVEENLREGQMLLFSHGFNIHFG 113 (335)
T ss_pred HHHHhcCCCCCEEEECCCcceecC
Confidence 5444443 358888999988643
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.9e-05 Score=67.61 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=66.9
Q ss_pred ceEEEEccCCCCchhhhHHHH-HhCCceEEeec--cCCCCCe---EecCcccc-ccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAI-EYGTKMVVGGV--TPKKGGT---EHLGLPVF-NSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgV--dp~~~G~---~i~GvPVy-~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.||.|+|+ |++|+.+...++ ..+++++ +-+ ||...+. +..|+|.+ ++.+++++..++|++++.+|+....+
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~~~elv-aV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e 79 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMV-AMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR 79 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCCCcEEE-EEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 58999997 999999976665 4567887 655 4443231 23588865 57899887668999999999999999
Q ss_pred HHHHHHHcCCCEEEE
Q 030169 132 AIMEAMEAELDLVVC 146 (182)
Q Consensus 132 a~~eAie~GIk~VV~ 146 (182)
.+..|+++|++++.-
T Consensus 80 ~a~~al~aGk~VIde 94 (285)
T TIGR03215 80 HARLLAELGKIVIDL 94 (285)
T ss_pred HHHHHHHcCCEEEEC
Confidence 999999999887543
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=62.69 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=72.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC----ceEEeeccCCCCCe-----EecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVVGGVTPKKGGT-----EHLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~----~IV~AgVdp~~~G~-----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
++|.|+|+ |.||+.+++.+.+.|. +|. ..++..... ...|+.+..+..++.+ ++|++++.+||..+
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~--v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDiVilav~p~~~ 75 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLT--ITNRTPAKAYHIKERYPGIHVAKTIEEVIS--QSDLIFICVKPLDI 75 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE--EECCCHHHHHHHHHHcCCeEEECCHHHHHH--hCCEEEEecCHHHH
Confidence 36999997 9999999999888772 344 566643110 1126778888888877 79999999999999
Q ss_pred HHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHH
Q 030169 130 AAAIMEAMEA--ELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 130 ~~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~ 160 (182)
.+++++.... .=+.|+-++.|++.+++..+.
T Consensus 76 ~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~ 108 (273)
T PRK07680 76 YPLLQKLAPHLTDEHCLVSITSPISVEQLETLV 108 (273)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 9998875432 124677778999887777654
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.6e-05 Score=55.21 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=55.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCe----EecCccccc-cHHHHHhccCCcEEEEeeChHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGT----EHLGLPVFN-SVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~----~i~GvPVy~-Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
||.++|+ |+||+.+.+.+.+.| .+|. -..++..... +..++.++. +..|+.+ +.|++++.+||....+
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~advvilav~p~~~~~ 76 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVI-IVSSRSPEKAAELAKEYGVQATADDNEEAAQ--EADVVILAVKPQQLPE 76 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEE-EEEESSHHHHHHHHHHCTTEEESEEHHHHHH--HTSEEEE-S-GGGHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEE-eeccCcHHHHHHHHHhhccccccCChHHhhc--cCCEEEEEECHHHHHH
Confidence 6889998 999999999999988 7777 2324443111 123556677 7999888 7999999999999999
Q ss_pred HHHHH
Q 030169 132 AIMEA 136 (182)
Q Consensus 132 a~~eA 136 (182)
++.+.
T Consensus 77 v~~~i 81 (96)
T PF03807_consen 77 VLSEI 81 (96)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00019 Score=63.09 Aligned_cols=104 Identities=10% Similarity=0.072 Sum_probs=77.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCC--CCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKK--GGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~--~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
+||.|+|+ |.+|+.+++.+... +++++ +-.++.. ........|+++++++++.. ++|++|-.-++.++.+..
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~-~V~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQPCQLA-ALTRNAADLPPALAGRVALLDGLPGLLAW-RPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCCceEEE-EEecCCHHHHHHhhccCcccCCHHHHhhc-CCCEEEECCCHHHHHHHH
Confidence 68999999 99999999987643 26777 4333321 00012248999999997532 799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHH-HHHHHHHHhcc
Q 030169 134 MEAMEAELDLVVCITEGIPQH-DMVINFTRVNI 165 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~e-D~~~l~~~ak~ 165 (182)
+..+++|+.+++.-..-+..+ -.++|.++|++
T Consensus 80 ~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 80 EGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 999999999999844555543 35567777743
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.7e-05 Score=64.17 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=72.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhcc-CCcEEEEeeChH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~-av~~a~ 133 (182)
++|.++|. |+||+.+++.+.+.|.+|+ ..|+...-.+ ..|..++++++|+.++. .+|++++.+|+. .+.+++
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~~v~--v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~ 77 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGHEVV--GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI 77 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH
Confidence 47999998 9999999999999998888 5665431101 13788899999988742 379999999998 777777
Q ss_pred HHHHHcC-C-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 MEAMEAE-L-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 ~eAie~G-I-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++....- - +.+|. ++..+..+..++.+..+.
T Consensus 78 ~~i~~~l~~g~ivid-~st~~~~~~~~~~~~~~~ 110 (299)
T PRK12490 78 KDLYPLLSPGDIVVD-GGNSRYKDDLRRAEELAE 110 (299)
T ss_pred HHHhccCCCCCEEEE-CCCCCchhHHHHHHHHHH
Confidence 6554331 1 24555 666666666666666543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=63.68 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=71.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhcc-CCcEEEEeeChH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~-av~~a~ 133 (182)
+||.++|. |.||+.+++.+.+.|.+++ ..|+...-.+ ..|+.++++++|+.+.. ++|++++.+|+. .+.+++
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~~v~--v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~ 77 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGHEVV--GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI 77 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCCeEE--EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH
Confidence 47999998 9999999999999998888 5565431111 13788899999988743 479999999987 666666
Q ss_pred HHHHHc--CCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 134 MEAMEA--ELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+..... .=+.+|..+++-+ ++..++.+.+++-
T Consensus 78 ~~l~~~l~~g~ivid~st~~~-~~~~~~~~~~~~~ 111 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYY-KDDIRRAELLAEK 111 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCCh-hHHHHHHHHHHHc
Confidence 555443 1145666455554 4555555555443
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00017 Score=62.89 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=65.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.+||.|+|+ |.||+.+++.+.+.|.+|. ..++... .+++++.+ +.|++++.+|.....++++...
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~~V~--~~~r~~~----------~~~~~~~~--~advvi~~vp~~~~~~v~~~l~ 68 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGHRVR--VWSRRSG----------LSLAAVLA--DADVIVSAVSMKGVRPVAEQVQ 68 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEE--EEeCCCC----------CCHHHHHh--cCCEEEEECChHHHHHHHHHHH
Confidence 478999999 9999999999999998887 5555432 46788887 7999999999998888876654
Q ss_pred HcCC---CEEEEeCCCCCHHHHHHH
Q 030169 138 EAEL---DLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 138 e~GI---k~VV~iTeG~~~eD~~~l 159 (182)
...+ ..|+..|.|+.++....+
T Consensus 69 ~~~~~~~~ivi~~s~gi~~~~~~~~ 93 (308)
T PRK14619 69 ALNLPPETIIVTATKGLDPETTRTP 93 (308)
T ss_pred HhcCCCCcEEEEeCCcccCCCCcCH
Confidence 4222 345665778877654433
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=9e-05 Score=64.76 Aligned_cols=99 Identities=20% Similarity=0.131 Sum_probs=68.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-----------CeEecC------ccccccHHHHHhccCCcEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-----------GTEHLG------LPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-----------G~~i~G------vPVy~Sv~ea~~~~~~Dva 120 (182)
.+||.|+|+ |.||..++..+.+.|.+|. .+++... +..+.| +...++.+|+.+ ++|++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~--~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~--~aD~V 78 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGVPVR--LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA--GADFA 78 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--CCCEE
Confidence 468999999 9999999999998887777 5555321 000113 445667888777 79999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHH--HHHHHHHh
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD--MVINFTRV 163 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD--~~~l~~~a 163 (182)
++.+|+..+.+++.. +..+. .++.+++|+..++ ..++.+..
T Consensus 79 i~~v~~~~~~~v~~~-l~~~~-~vi~~~~Gi~~~~~~~~~l~~~l 121 (328)
T PRK14618 79 VVAVPSKALRETLAG-LPRAL-GYVSCAKGLAPDGGRLSELARVL 121 (328)
T ss_pred EEECchHHHHHHHHh-cCcCC-EEEEEeeccccCCCccchHHHHH
Confidence 999999988777644 33444 4555589987554 44554443
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=61.41 Aligned_cols=100 Identities=6% Similarity=0.009 Sum_probs=72.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCce--EEeeccCCCCC-eE----ecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKM--VVGGVTPKKGG-TE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~I--V~AgVdp~~~G-~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+||.|+|+ |+||+.+++.+.+.|.++ + ...++...- ++ ..++.++++..|+.+ ++|++++.+||....+
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i-~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~--~aDvVilav~p~~~~~ 76 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEI-IVSPRNAQIAARLAERFPKVRIAKDNQAVVD--RSDVVFLAVRPQIAEE 76 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheE-EEECCCHHHHHHHHHHcCCceEeCCHHHHHH--hCCEEEEEeCHHHHHH
Confidence 37999998 999999999988766332 2 234443211 01 225778899999887 7899999999999988
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
++.+.--..=+.||.+..|++.+++.++...
T Consensus 77 vl~~l~~~~~~~vis~~ag~~~~~l~~~~~~ 107 (258)
T PRK06476 77 VLRALRFRPGQTVISVIAATDRAALLEWIGH 107 (258)
T ss_pred HHHHhccCCCCEEEEECCCCCHHHHHHHhCC
Confidence 8876421122467777899999999988754
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=64.14 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=88.4
Q ss_pred CCceEEEEccCCCCchhhhHHHH---HhCCceEEeeccCCCCCe----Eec---CccccccHHHHHhccCCcEEEEeeCh
Q 030169 57 KNTRVICQGITGKNGTFHTEQAI---EYGTKMVVGGVTPKKGGT----EHL---GLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~---~~g~~IV~AgVdp~~~G~----~i~---GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+..|+-|+|+ |++++..++.+. +.+..|+ |-.+|...-- +-+ ..++|+|.||+.+..++|++.+-+|.
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Iv-ava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTLPESNHQIV-AVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccCcccCcEEE-EEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCC
Confidence 4578889999 999999988666 3368899 8888843110 012 35899999999997788999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
...++++..|+++|.++.+==--..++.|.++|.++|+.--|
T Consensus 83 ~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv 124 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGV 124 (351)
T ss_pred ccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence 999999999999999965433356899999999999987654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=60.58 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=70.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHHH-HH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AI- 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~-a~- 133 (182)
+||.|+|+ |.||+.+++.+.+.|.+++ +.|+...-.+ ..|+.+.++.+|+.+ ++|++++.+|...... ++
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~~v~--~~d~~~~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp~~~~~~~v~~ 77 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGYSLV--VYDRNPEAVAEVIAAGAETASTAKAVAE--QCDVIITMLPNSPHVKEVAL 77 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHc
Confidence 47999998 9999999999999998887 5666532111 136778889999888 7999999999665433 33
Q ss_pred --HHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 --MEAMEA-ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 --~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+..+.. .-..+++-++.++.....++.+..+.
T Consensus 78 ~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~ 112 (296)
T PRK11559 78 GENGIIEGAKPGTVVIDMSSIAPLASREIAAALKA 112 (296)
T ss_pred CcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 222322 12233333666777777777776644
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00015 Score=56.83 Aligned_cols=85 Identities=25% Similarity=0.180 Sum_probs=61.1
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCC-----CCeEe--cCccccccHHHHHhccCCcEEEEeeC-----hHH
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK-----GGTEH--LGLPVFNSVAEAKAETKANASVIYVP-----PPF 128 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~-----~G~~i--~GvPVy~Sv~ea~~~~~~DvaVdfVp-----p~a 128 (182)
|+|.|+||..|+.+++.+++.|.+|+ +.+-... .+-++ .++-=.+++.++++ ++|+++..++ ...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~-~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~ 77 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVT-ALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDA 77 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEE-EEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEE-EEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhcccccc
Confidence 78999999999999999999999999 6443222 11111 12222234677777 8999999998 455
Q ss_pred HHHHHHHHHHcCCCEEEEeC
Q 030169 129 AAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iT 148 (182)
+..+++.+.++|++.+|.++
T Consensus 78 ~~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 78 AKNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp HHHHHHHHHHTTSSEEEEEE
T ss_pred cccccccccccccccceeee
Confidence 66777777788999887655
|
... |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=62.33 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=70.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhc-cCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAE-TKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~-~~~DvaVdfVpp~av~~a~~ 134 (182)
++|.|+|. |+||..++..+.+.|.+|+ +.|+...--+ -.+...+.+++++.+. ..+|++++.+|+..+.++++
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~~V~--~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~ 77 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGHDCV--GYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLE 77 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHH
Confidence 47999998 9999999999999998888 4665531100 1256677888887653 26899999999998888887
Q ss_pred HHHHc---CCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 135 EAMEA---ELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 135 eAie~---GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
+.... | +.||..+++.+.+-.....++.
T Consensus 78 ~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~ 108 (298)
T TIGR00872 78 ELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLK 108 (298)
T ss_pred HHHhhCCCC-CEEEECCCCCcccHHHHHHHHH
Confidence 76543 3 4566655665554444444443
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00045 Score=60.09 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=78.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
++|.++|| |..|+.+++.+.+. +++++ +--|....--. -.+-+...++.|.++ ++|+++-.-.++++.+.
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v-~v~D~~~ek~~~~~~~~~~~~~s~ide~~~--~~DlvVEaAS~~Av~e~ 76 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELV-AVYDRDEEKAKELEASVGRRCVSDIDELIA--EVDLVVEAASPEAVREY 76 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEE-EEecCCHHHHHHHHhhcCCCccccHHHHhh--ccceeeeeCCHHHHHHH
Confidence 36899999 99999999988854 48888 66555442111 114444488999987 89999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHH-HHHHHHhcc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDM-VINFTRVNI 165 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~-~~l~~~ak~ 165 (182)
+.+++++|++.+|.-+--+.+++. +++.+++|.
T Consensus 77 ~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~ 110 (255)
T COG1712 77 VPKILKAGIDVIVMSVGALADEGLRERLRELAKC 110 (255)
T ss_pred hHHHHhcCCCEEEEechhccChHHHHHHHHHHhc
Confidence 999999999999985555665544 446667764
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00016 Score=63.91 Aligned_cols=76 Identities=12% Similarity=0.235 Sum_probs=60.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+.++|.|+|+ |.||+.+++.+.+.|.+|+ ++++..... ...|+..+.+.+++.. .++|++++.+|+....+++.
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~~V~--~~d~~~~~~~a~~~gv~~~~~~~e~~~-~~aDvVilavp~~~~~~vl~ 110 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGHTVL--ATSRSDYSDIAAELGVSFFRDPDDFCE-EHPDVVLLCTSILSTEAVLR 110 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCCEEE--EEECccHHHHHHHcCCeeeCCHHHHhh-CCCCEEEEecCHHHHHHHHH
Confidence 4568999997 9999999999998888888 777765211 1136777888888753 15899999999999988888
Q ss_pred HH
Q 030169 135 EA 136 (182)
Q Consensus 135 eA 136 (182)
+.
T Consensus 111 ~l 112 (304)
T PLN02256 111 SL 112 (304)
T ss_pred hh
Confidence 76
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00039 Score=60.94 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=75.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+||.++|+ |+||+.+...+++.| .+|+ -.+|...-.. ..|+.+.++..++.+ +.|++++.|.|....
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~--v~~~~~e~~~~l~~~~g~~~~~~~~~~~~--~advv~LavKPq~~~ 76 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEII--VTNRSEEKRAALAAEYGVVTTTDNQEAVE--EADVVFLAVKPQDLE 76 (266)
T ss_pred ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEE--EeCCCHHHHHHHHHHcCCcccCcHHHHHh--hCCEEEEEeChHhHH
Confidence 67999999 999999999999877 4566 4555542221 125556677778777 799999999999999
Q ss_pred HHHHHHHH-cCCCEEEEeCCCCCHHHHHHHHH
Q 030169 131 AAIMEAME-AELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 131 ~a~~eAie-~GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+++...-. ..=++||-+..|++.++++.+.-
T Consensus 77 ~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~ 108 (266)
T COG0345 77 EVLSKLKPLTKDKLVISIAAGVSIETLERLLG 108 (266)
T ss_pred HHHHHhhcccCCCEEEEEeCCCCHHHHHHHcC
Confidence 99888874 34456777799999999988874
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00028 Score=63.10 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=68.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCC-CCeEec----Ccc-----ccc--cHHHHHhccCCcEEEEeeC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKK-GGTEHL----GLP-----VFN--SVAEAKAETKANASVIYVP 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~-~G~~i~----GvP-----Vy~--Sv~ea~~~~~~DvaVdfVp 125 (182)
+||+|+|+||..|+.+++.+.+. +.+++ +-+++.. .|+.+. .++ .|. +.+++.+ ++|++++.+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~-~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEIT-YLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEE-EEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCC
Confidence 47999999999999999988865 58888 6545443 343221 111 133 3445444 7999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~ 156 (182)
.....+.+.++.++|+++|=. +..+..++.
T Consensus 78 ~~~s~~~~~~~~~~G~~VIDl-S~~fR~~~~ 107 (346)
T TIGR01850 78 HGVSAELAPELLAAGVKVIDL-SADFRLKDP 107 (346)
T ss_pred chHHHHHHHHHHhCCCEEEeC-ChhhhcCCh
Confidence 999999999999999665554 777776653
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00037 Score=62.75 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=72.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
+..+|+|+|+ |.+|++++.+|.+.|.+|+ =|+-++..-- +..|+.|| +++|+.+ ..|++++.+|-..-.++-
T Consensus 17 kgK~iaIIGY-GsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~-~v~ea~k--~ADvim~L~PDe~q~~vy 91 (338)
T COG0059 17 KGKKVAIIGY-GSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVY-TVEEAAK--RADVVMILLPDEQQKEVY 91 (338)
T ss_pred cCCeEEEEec-ChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEee-cHHHHhh--cCCEEEEeCchhhHHHHH
Confidence 3457999999 9999999999999999988 5665554210 13589987 5788888 799999999998888888
Q ss_pred HHHHHcCCC--EEEEeCCCCCHHH
Q 030169 134 MEAMEAELD--LVVCITEGIPQHD 155 (182)
Q Consensus 134 ~eAie~GIk--~VV~iTeG~~~eD 155 (182)
++.++-..+ .++.++-||.+|-
T Consensus 92 ~~~I~p~Lk~G~aL~FaHGfNihf 115 (338)
T COG0059 92 EKEIAPNLKEGAALGFAHGFNIHF 115 (338)
T ss_pred HHHhhhhhcCCceEEeccccceec
Confidence 877765333 2677788887764
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00037 Score=62.40 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=70.9
Q ss_pred ceEEEEccCCCCchhhhHHHHH------h--CCceEEeeccCCC-----CCeEe---------cCcccc--c--cHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIE------Y--GTKMVVGGVTPKK-----GGTEH---------LGLPVF--N--SVAEAK 112 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~------~--g~~IV~AgVdp~~-----~G~~i---------~GvPVy--~--Sv~ea~ 112 (182)
+||+|+|| |..|+.+++.+.+ + +++|| +-.|... .|-+. ..+..| + +++++.
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VV-aVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVV-SVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIF 78 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEE-EEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHh
Confidence 47999999 9999999998875 3 46777 5433321 11000 011122 2 566665
Q ss_pred hccCCcEEEEeeChH----HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 113 AETKANASVIYVPPP----FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~----av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
+ .++|++|+.+|.. -+.+...+|+++|+++|.. .-|.--....+|.++|++-.
T Consensus 79 ~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa-NKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 79 E-IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA-NKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred c-CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC-CHHHHHhhHHHHHHHHHHcC
Confidence 4 4799999999742 2678889999999999876 55555566788888887643
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00031 Score=62.42 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=68.8
Q ss_pred CceEEEEccCCCCchhhhHHH-HHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH--H
Q 030169 58 NTRVICQGITGKNGTFHTEQA-IEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI--M 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~-~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~--~ 134 (182)
.++|.|+|+ |++|+.+++.+ ..+|++|+ +.||.........+....+++|+.+ ++|++++.+|-......+ +
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~--~~d~~~~~~~~~~~~~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~ 220 (332)
T PRK08605 146 DLKVAVIGT-GRIGLAVAKIFAKGYGSDVV--AYDPFPNAKAATYVDYKDTIEEAVE--GADIVTLHMPATKYNHYLFNA 220 (332)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCEEE--EECCCccHhHHhhccccCCHHHHHH--hCCEEEEeCCCCcchhhhcCH
Confidence 457999998 99999999998 56788988 7887653211123444568999988 799999999976555444 1
Q ss_pred ---HHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 135 ---EAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 135 ---eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
..++.| ..+|+++.|..+.....+.++.
T Consensus 221 ~~l~~mk~g-ailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 221 DLFKHFKKG-AVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred HHHhcCCCC-cEEEECCCCcccCHHHHHHHHH
Confidence 222333 2577877777665555444443
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=52.20 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=61.7
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCC--CCCeEecCccccccHHHHHhc-cCCcEEEEeeC-hHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK--KGGTEHLGLPVFNSVAEAKAE-TKANASVIYVP-PPFAAAAIME 135 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~--~~G~~i~GvPVy~Sv~ea~~~-~~~DvaVdfVp-p~av~~a~~e 135 (182)
+++|+|+ |.+|+.+++.+.+.|.+++ |-+|.. +.++.+.|+|+|.+.+++.+. .+.+..++.++ +..-+++.+.
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~~~g~~vv-gfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~ 78 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAEDSGWEIV-GFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEK 78 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCEEE-EEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHH
Confidence 4889999 9999999999998899999 877655 346678899999987775442 14567777774 4555566666
Q ss_pred HHHcCCCEE
Q 030169 136 AMEAELDLV 144 (182)
Q Consensus 136 Aie~GIk~V 144 (182)
+.+.+++..
T Consensus 79 l~~~g~~~~ 87 (201)
T TIGR03570 79 LKAKGYRFA 87 (201)
T ss_pred HHhCCCcce
Confidence 667776654
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00019 Score=64.78 Aligned_cols=102 Identities=21% Similarity=0.199 Sum_probs=79.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeec-------------cCCCC-CeEe-cCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGV-------------TPKKG-GTEH-LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgV-------------dp~~~-G~~i-~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
++|.|.|+ |.+|+++++.+.+.| ..++ +- |+..- |... .++...++++++.+ ++|+++
T Consensus 2 ~kI~ViGa-GswGTALA~~la~ng~~V~lw--~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~--~ad~iv 76 (329)
T COG0240 2 MKIAVIGA-GSWGTALAKVLARNGHEVRLW--GRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD--GADIIV 76 (329)
T ss_pred ceEEEEcC-ChHHHHHHHHHHhcCCeeEEE--ecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh--cCCEEE
Confidence 68999999 999999999999887 4455 32 22211 1111 25677888999999 799999
Q ss_pred EeeChHHHHHHHHHH---HHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 122 IYVPPPFAAAAIMEA---MEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 122 dfVpp~av~~a~~eA---ie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.+|..+..++++.. +..+.+.|+| |.|+-.+....+.+..+++
T Consensus 77 ~avPs~~~r~v~~~l~~~l~~~~~iv~~-sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 77 IAVPSQALREVLRQLKPLLLKDAIIVSA-TKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred EECChHHHHHHHHHHhhhccCCCeEEEE-eccccCCCcchHHHHHHHH
Confidence 999999999999885 3567777787 9999998888888877554
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00015 Score=64.58 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=70.2
Q ss_pred EEEEccCCCCchhhhHHHHHhC-C-ceEEeeccCCC--------CCeEe----cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 61 VICQGITGKNGTFHTEQAIEYG-T-KMVVGGVTPKK--------GGTEH----LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g-~-~IV~AgVdp~~--------~G~~i----~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
|+|.|+ |.+|+.+++.+.+.+ . +|++|+-++.+ .+..+ .++-=..+++++++ +.|++|..+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--GCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--TSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--cCCEEEECCcc
Confidence 689999 999999999998766 4 77767766655 11111 12222334667777 78999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.....+++.|+++|++-|= +.+-.+++.++.+.|++--
T Consensus 78 ~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g 115 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAG 115 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTT
T ss_pred chhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhC
Confidence 9999999999999998654 4446778888888887433
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00073 Score=57.72 Aligned_cols=80 Identities=9% Similarity=0.004 Sum_probs=63.1
Q ss_pred CceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC--CHHHH
Q 030169 83 TKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI--PQHDM 156 (182)
Q Consensus 83 ~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~--~~eD~ 156 (182)
.+++ +-.|+....- +..|+++|++++|+++ .++|++++.+|+....+.+..++++|+++++. +.|- ..++.
T Consensus 2 ~eLv-aV~D~~~e~a~~~a~~~g~~~~~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~-s~gAlad~e~~ 78 (229)
T TIGR03855 2 FEIA-AVYDRNPKDAKELAERCGAKIVSDFDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLIM-SVGALADRELR 78 (229)
T ss_pred eEEE-EEECCCHHHHHHHHHHhCCceECCHHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEE-CCcccCCHHHH
Confidence 4566 6666654211 1236899999999876 37999999999999999999999999998885 6653 56889
Q ss_pred HHHHHHhcc
Q 030169 157 VINFTRVNI 165 (182)
Q Consensus 157 ~~l~~~ak~ 165 (182)
++|.+++++
T Consensus 79 ~~l~~aA~~ 87 (229)
T TIGR03855 79 ERLREVARS 87 (229)
T ss_pred HHHHHHHHh
Confidence 999998865
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00062 Score=58.44 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=68.9
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHHH-HH--
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AI-- 133 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~-a~-- 133 (182)
||.|+|. |.||+.+++.+.+.|.+|+ ++|+...--+ ..|.....+.+++.+ ++|++++.+|.....+ ++
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~--~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGYQLH--VTTIGPEVADELLAAGAVTAETARQVTE--QADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHCCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcC
Confidence 5889998 9999999999999998888 6676541110 135667788989888 7999999999864443 33
Q ss_pred -HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 -MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 -~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.++.. .- +.++. ++.++..+..++.+..++
T Consensus 76 ~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~ 109 (291)
T TIGR01505 76 ENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKE 109 (291)
T ss_pred cchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH
Confidence 112222 11 23454 566667777777776654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00064 Score=59.30 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=71.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHH--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME-- 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~e-- 135 (182)
+||.++|. |+||..+++.+.+.|.++.+-..+|....-...|..++++.+|+.+ ++|++++.+|... +.+++..
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~--~advVi~~v~~~~~v~~v~~~~~ 77 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTE--ASDIIFIMVPDTPQVEEVLFGEN 77 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCc
Confidence 36899998 9999999999999998876234555321101136778899999887 8999999999774 3444321
Q ss_pred HHHcCCC--EEEEeCCCCCHHHHHHHHHHhccc
Q 030169 136 AMEAELD--LVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 136 Aie~GIk--~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+-.+.+ .+|+-++.++..+..++.+.++.-
T Consensus 78 g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~ 110 (292)
T PRK15059 78 GCTKASLKGKTIVDMSSISPIETKRFARQVNEL 110 (292)
T ss_pred chhccCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 1111222 244447888888888888876543
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=54.77 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------E--ecCcc--cc-ccHHHHHhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------E--HLGLP--VF-NSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------~--i~GvP--Vy-~Sv~ea~~~~~~DvaVdfVpp 126 (182)
|||.|+|.+|.||+.+.+.+.+.|.+|++..-++.+... . ..|+. +. .+.+++.+ ++|++++.+|+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~--~aDvVilavp~ 78 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK--RADVVILAVPW 78 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh--cCCEEEEECCH
Confidence 579999867999999999999888777722233321100 0 01221 22 35567777 78999999999
Q ss_pred HHHHHHHHHHHHc--CCCEEEEeCCCCCH
Q 030169 127 PFAAAAIMEAMEA--ELDLVVCITEGIPQ 153 (182)
Q Consensus 127 ~av~~a~~eAie~--GIk~VV~iTeG~~~ 153 (182)
....+++++.... + +.|+-++-|++.
T Consensus 79 ~~~~~~l~~l~~~l~~-~vvI~~~ngi~~ 106 (219)
T TIGR01915 79 DHVLKTLESLRDELSG-KLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHHHhccC-CEEEEeccCcee
Confidence 9999988776432 4 778877889886
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00047 Score=61.56 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=64.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEee-ccCCCCCeEecC-ccc--c-------------c-cHHHHHhccCCcE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGG-VTPKKGGTEHLG-LPV--F-------------N-SVAEAKAETKANA 119 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~Ag-Vdp~~~G~~i~G-vPV--y-------------~-Sv~ea~~~~~~Dv 119 (182)
.||+|+|++|.+|+.+++.+.+.. .+++ +- .++...|+.+.. +|. | . +.++ .+ ++|+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~-~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~Dv 79 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVT-ALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD--DVDI 79 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEE-EEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc--CCCE
Confidence 689999999999999999888655 7888 54 455555544321 122 1 1 1222 23 7999
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 120 SVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
+++.+|+....+.++.+.++|++.|.. +.-+
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vIDl-s~~f 110 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFSN-ASAH 110 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEEC-Cchh
Confidence 999999999999999999999988766 5433
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00042 Score=61.65 Aligned_cols=87 Identities=15% Similarity=0.051 Sum_probs=61.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC-CCCeEecC-ccc--c------------ccHH-HHHhccCCcEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK-KGGTEHLG-LPV--F------------NSVA-EAKAETKANAS 120 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~-~~G~~i~G-vPV--y------------~Sv~-ea~~~~~~Dva 120 (182)
+||+|+|++|.+|+.+.+.+.+.+ ++|+ +.++.. ..|+.... +|. | .+++ +.. .++|++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~-~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELA-KVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEE-EEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh--ccCCEE
Confidence 479999999999999999888765 8888 654332 33433321 111 1 1111 222 379999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
++.+|+....+..+++.++|+++|.. +.
T Consensus 78 f~a~p~~~s~~~~~~~~~~G~~VIDl-sg 105 (341)
T TIGR00978 78 FSALPSEVAEEVEPKLAEAGKPVFSN-AS 105 (341)
T ss_pred EEeCCHHHHHHHHHHHHHCCCEEEEC-Ch
Confidence 99999999999999999999997765 53
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00027 Score=60.68 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=66.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--C------CeE---e------cCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--G------GTE---H------LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--~------G~~---i------~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
+||.|+|+ |.||..++..+.+.|.++. .+++.. . +.. . .++.+..+.+++.+ ++|+++
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi 76 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGHDVT--LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA--DADLIL 76 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh--CCCEEE
Confidence 57999998 9999999999998887765 444431 0 000 0 13445667888777 799999
Q ss_pred EeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHHHHHHHH
Q 030169 122 IYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~eD~~~l~~ 161 (182)
+.+|+..+.+++.+.... . =..|+.++.|++.+...++.+
T Consensus 77 ~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~ 118 (325)
T PRK00094 77 VAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSE 118 (325)
T ss_pred EeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHH
Confidence 999999888888766543 1 134555566888765444433
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00059 Score=58.66 Aligned_cols=99 Identities=10% Similarity=0.034 Sum_probs=69.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+||.|+|. |.||..++..+.+.|.+|. ++|+.....+ .+.+....+..++.+ ++|++++.+|+..+.+.+.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~~V~--~~d~~~~~~~~a~~~g~~~~~~~~~~~~~--~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGHTVY--GVSRRESTCERAIERGLVDEASTDLSLLK--DCDLVILALPIGLLLPPSE 75 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHCCCcccccCCHhHhc--CCCEEEEcCCHHHHHHHHH
Confidence 47999997 9999999999998898877 7776542111 112233333334455 7999999999999999888
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 135 EAMEA-ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
+.... .-..+|.-+.+++.+....+.+.
T Consensus 76 ~l~~~l~~~~ii~d~~Svk~~~~~~~~~~ 104 (279)
T PRK07417 76 QLIPALPPEAIVTDVGSVKAPIVEAWEKL 104 (279)
T ss_pred HHHHhCCCCcEEEeCcchHHHHHHHHHHh
Confidence 77654 33445554777888777766654
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00053 Score=59.10 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=71.3
Q ss_pred EEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH---HH
Q 030169 63 CQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI---ME 135 (182)
Q Consensus 63 VvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~---~e 135 (182)
++|. |.||..+++.+.+.|.+|. +.|+.....+ ..|..+.++.+++.+ ++|++++.+|+. .+.+++ +.
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~~V~--v~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGHPVR--VFDLFPDAVEEAVAAGAQAAASPAEAAE--GADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCcch
Confidence 3576 9999999999999998887 5666542111 136778889999988 799999999984 455555 33
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 136 AMEA-ELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 136 Aie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
..+. .-..+++-+++++++...++.+..++--
T Consensus 76 l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g 108 (288)
T TIGR01692 76 ILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG 108 (288)
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 3333 2223444477999999999988876543
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0021 Score=58.00 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.++|+|+|..|.||..+++.+.+.|.++. ++++.. +.+.+++.+ ++|++++.+|.....+.+.+..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~--~~d~~~----------~~~~~~~~~--~aDlVilavP~~~~~~~~~~l~ 163 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVR--ILEQDD----------WDRAEDILA--DAGMVIVSVPIHLTEEVIARLP 163 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEE--EeCCCc----------chhHHHHHh--cCCEEEEeCcHHHHHHHHHHHh
Confidence 46799999779999999999999998877 666532 135677777 7999999999999999988755
Q ss_pred HcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 138 EAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 138 e~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
...-..+|.=.+.+...-+..+.+.
T Consensus 164 ~l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 164 PLPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred CCCCCcEEEECCCccHHHHHHHHHh
Confidence 4333345553455555555555544
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=55.24 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=57.3
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCCCe-EecCcc-cccc---HHHHHhc----cC-CcEEEEeeCh--
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKGGT-EHLGLP-VFNS---VAEAKAE----TK-ANASVIYVPP-- 126 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~G~-~i~GvP-Vy~S---v~ea~~~----~~-~DvaVdfVpp-- 126 (182)
+|+|.|+||..|+.+++.+.+.|.++. +.+ +|.+... .+..++ =|.+ +.++.+. .. +|.++...|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~-~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~ 79 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFL-VASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIP 79 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEE-EEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCC
Confidence 489999999999999999999999988 554 3322110 011111 1222 4444421 14 7877766653
Q ss_pred ---HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 ---PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ---~av~~a~~eAie~GIk~VV~iT 148 (182)
.....+++.|.++|++.+|.++
T Consensus 80 ~~~~~~~~~i~aa~~~gv~~~V~~S 104 (285)
T TIGR03649 80 DLAPPMIKFIDFARSKGVRRFVLLS 104 (285)
T ss_pred ChhHHHHHHHHHHHHcCCCEEEEee
Confidence 3566778888999999988754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.001 Score=60.75 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEec---------CccccccHHHH-HhccCCcEEEEeeC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHL---------GLPVFNSVAEA-KAETKANASVIYVP 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~---------GvPVy~Sv~ea-~~~~~~DvaVdfVp 125 (182)
..+||+|+|+||.-|+.+.+.+.+. +.+|. .-......|+.+. .++.+.++++. .+ ++|+++...|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~-~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~--~~DvVf~Alp 113 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEIT-VMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS--DVDAVFCCLP 113 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEE-EEEChhhcCCCchhhCccccCccccceecCCHHHhc--CCCEEEEcCC
Confidence 5579999999999999999998876 58887 5444434443321 23323333432 33 7999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~ 156 (182)
...+.+.+..+ +.|.++|-. +.-+..++-
T Consensus 114 ~~~s~~i~~~~-~~g~~VIDl-Ss~fRl~~~ 142 (381)
T PLN02968 114 HGTTQEIIKAL-PKDLKIVDL-SADFRLRDI 142 (381)
T ss_pred HHHHHHHHHHH-hCCCEEEEc-CchhccCCc
Confidence 99999999885 788665554 766655543
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=59.43 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=61.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec----Ccccccc-HHHHHhccCCcEEEEeeChHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL----GLPVFNS-VAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~----GvPVy~S-v~ea~~~~~~DvaVdfVpp~av 129 (182)
.+||+|+|+||..|+++.+.+.+.+ .+++ ...+....|+.+. .+++-+. ..+ .+ ++|+++..+|+...
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~-~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~--~vD~vFla~p~~~s 79 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLH-LLASSESAGHSVPFAGKNLRVREVDSFD-FS--QVQLAFFAAGAAVS 79 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEE-EEECcccCCCeeccCCcceEEeeCChHH-hc--CCCEEEEcCCHHHH
Confidence 3789999999999999999999644 5666 5555555564432 1222211 122 34 79999999999999
Q ss_pred HHHHHHHHHcCCCEE
Q 030169 130 AAAIMEAMEAELDLV 144 (182)
Q Consensus 130 ~~a~~eAie~GIk~V 144 (182)
.+.+.++.++|+++|
T Consensus 80 ~~~v~~~~~~G~~VI 94 (336)
T PRK05671 80 RSFAEKARAAGCSVI 94 (336)
T ss_pred HHHHHHHHHCCCeEE
Confidence 999999999999866
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=59.00 Aligned_cols=81 Identities=16% Similarity=0.032 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+||+|+|++|.-|+.+++.+.+.+ .+++ +-......|+.+. .+++.+.-.+..+ ++|+++..+|.....+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~-~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~--~vDvVf~A~g~g~s~~ 78 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLR-LLASARSAGKELSFKGKELKVEDLTTFDFS--GVDIALFSAGGSVSKK 78 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEE-EEEccccCCCeeeeCCceeEEeeCCHHHHc--CCCEEEECCChHHHHH
Confidence 589999999999999999999854 5777 6555555555442 2333322222234 7999999999999999
Q ss_pred HHHHHHHcCCC
Q 030169 132 AIMEAMEAELD 142 (182)
Q Consensus 132 a~~eAie~GIk 142 (182)
.+..++++|.+
T Consensus 79 ~~~~~~~~G~~ 89 (334)
T PRK14874 79 YAPKAAAAGAV 89 (334)
T ss_pred HHHHHHhCCCE
Confidence 99999999983
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=52.58 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=59.7
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC----------------CCe-EecCccccccHHHHHhccCCcEEEE
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK----------------GGT-EHLGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~----------------~G~-~i~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
||.|.|+ |.+|++++..+.+.|.++. -..+.. .+. -...+.+.++++++++ +.|++++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~--l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~--~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVT--LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE--DADIIII 75 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEE--EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT--T-SEEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEE--EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC--cccEEEe
Confidence 6999999 9999999999998885544 222221 000 1124667888999998 8999999
Q ss_pred eeChHHHHHHHHHHHHc--CCCEEEEeCCCC
Q 030169 123 YVPPPFAAAAIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 123 fVpp~av~~a~~eAie~--GIk~VV~iTeG~ 151 (182)
.+|..+..+.+++.... .-..+|..+.||
T Consensus 76 avPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 76 AVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999998887763 333445558898
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=54.26 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=60.6
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--E--ecCccc----ccc---HHHHHhccCCcEEEEeeC----
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--E--HLGLPV----FNS---VAEAKAETKANASVIYVP---- 125 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~--i~GvPV----y~S---v~ea~~~~~~DvaVdfVp---- 125 (182)
|+|.|++|++|+.+++.+.+.+.+|. +.+.+..... + ..|+-+ |.+ +.++++ ++|+++..++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~-~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVR-ALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALK--GVDAVFSVTPPSHP 77 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEE-EEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHT--TCSEEEEESSCSCC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcE-EEEeccchhhhhhhhcccceEeecccCCHHHHHHHHc--CCceEEeecCcchh
Confidence 78999999999999999999888888 7666542100 0 012221 333 555566 8999999999
Q ss_pred --hHHHHHHHHHHHHcCCCEEEE
Q 030169 126 --PPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 --p~av~~a~~eAie~GIk~VV~ 146 (182)
......+++.|.++|++.+|-
T Consensus 78 ~~~~~~~~li~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 78 SELEQQKNLIDAAKAAGVKHFVP 100 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SEEEE
T ss_pred hhhhhhhhHHHhhhccccceEEE
Confidence 457788999999999999985
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=57.20 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=64.3
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e-------cC--------------ccccccHHHHHh
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H-------LG--------------LPVFNSVAEAKA 113 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i-------~G--------------vPVy~Sv~ea~~ 113 (182)
++-++|.|+|+ |.||..++..+...|.+|+ .+|+....-+ . .+ +.+.++.+++.+
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGLQVV--LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS 78 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCCeEE--EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc
Confidence 34568999999 9999999999998898888 5665331100 0 01 234456777776
Q ss_pred ccCCcEEEEeeChHH--HHHHHHHHHHc-CCC-EEEEeCCCCCHHHHHHH
Q 030169 114 ETKANASVIYVPPPF--AAAAIMEAMEA-ELD-LVVCITEGIPQHDMVIN 159 (182)
Q Consensus 114 ~~~~DvaVdfVpp~a--v~~a~~eAie~-GIk-~VV~iTeG~~~eD~~~l 159 (182)
++|++++.+|+.. ..++..+.-.. .-. .|+..|.|++.+++.+.
T Consensus 79 --~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~ 126 (311)
T PRK06130 79 --GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQA 126 (311)
T ss_pred --cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhh
Confidence 7999999999875 33444443221 112 44456889987655543
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=60.32 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=70.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eE---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+||.|+|+.|.||..+++.+.+.|.+++ ++++.... .+ ..|+.+.++.+++.+ ++|++++.+|+....+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~--v~~r~~~~~~~~a~~~gv~~~~~~~e~~~--~aDvVIlavp~~~~~~vl~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVI--VTGRDPKKGKEVAKELGVEYANDNIDAAK--DADIVIISVPINVTEDVIK 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEE--EEECChHHHHHHHHHcCCeeccCHHHHhc--cCCEEEEecCHHHHHHHHH
Confidence 4799999779999999999999998877 44443211 01 136666777888777 7999999999999988888
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 135 EAMEA-ELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
+.... .-..+|+-...+...-...+.+..
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~ 106 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYA 106 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhc
Confidence 77654 222343334445555555665554
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00059 Score=53.58 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=60.2
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-----EecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+..||.|+|+ ||.|+.+.+.+.+.|.+|+ +-.++..... .+.+.++. +++|+.+ +.|++++.||-++..
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~-~v~srs~~sa~~a~~~~~~~~~~-~~~~~~~--~aDlv~iavpDdaI~ 82 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGHEVV-GVYSRSPASAERAAAFIGAGAIL-DLEEILR--DADLVFIAVPDDAIA 82 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTSEEE-EESSCHH-HHHHHHC--TT------TTGGGC--C-SEEEE-S-CCHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCCeEE-EEEeCCccccccccccccccccc-ccccccc--cCCEEEEEechHHHH
Confidence 45789999999 9999999999999998888 4334433111 13456665 4667777 799999999999999
Q ss_pred HHHHHHHHc---CCCEEEEeCCCCCHHHHHH
Q 030169 131 AAIMEAMEA---ELDLVVCITEGIPQHDMVI 158 (182)
Q Consensus 131 ~a~~eAie~---GIk~VV~iTeG~~~eD~~~ 158 (182)
+++++.-.. .-..+|+=|.|--.-|+++
T Consensus 83 ~va~~La~~~~~~~g~iVvHtSGa~~~~vL~ 113 (127)
T PF10727_consen 83 EVAEQLAQYGAWRPGQIVVHTSGALGSDVLA 113 (127)
T ss_dssp HHHHHHHCC--S-TT-EEEES-SS--GGGGH
T ss_pred HHHHHHHHhccCCCCcEEEECCCCChHHhhh
Confidence 999888876 2334666688866555543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0021 Score=58.86 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=72.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~ 133 (182)
.++|.|+|+ |++|+.+++.+..+|++|. ++|+.....+ ..|+..+.+++|+.+ ++|++++.+|-.. +..++
T Consensus 192 gktVGIvG~-G~IG~~vA~~l~~fG~~V~--~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li 266 (385)
T PRK07574 192 GMTVGIVGA-GRIGLAVLRRLKPFDVKLH--YTDRHRLPEEVEQELGLTYHVSFDSLVS--VCDVVTIHCPLHPETEHLF 266 (385)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE--EECCCCCchhhHhhcCceecCCHHHHhh--cCCEEEEcCCCCHHHHHHh
Confidence 356999999 9999999999999999999 7887642111 235666789999998 8999999999443 33333
Q ss_pred HHHHHcCC---CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 134 MEAMEAEL---DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 ~eAie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
.+..=..+ ..+|+++-| ..-|...|.++.+.-.++
T Consensus 267 ~~~~l~~mk~ga~lIN~aRG-~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 267 DADVLSRMKRGSYLVNTARG-KIVDRDAVVRALESGHLA 304 (385)
T ss_pred CHHHHhcCCCCcEEEECCCC-chhhHHHHHHHHHhCCcc
Confidence 32222222 357775555 444666666666554443
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.003 Score=58.22 Aligned_cols=106 Identities=9% Similarity=0.097 Sum_probs=79.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCC---------eE--ecCccccccHHHHHhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGG---------TE--HLGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G---------~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+||+|.|+ |..|+.++..+.+.+ .+|.+|+-++.+-. -+ ..++-=.+.+.++++ +.|++|...|+
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~--~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK--DFDLVINAAPP 78 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--cCCEEEEeCCc
Confidence 57999999 999999999988776 89885654432211 01 123444455788888 66999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 170 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~ 170 (182)
.....+++.|++.|++.+-. +.+-+. ..++.+.+++-.+..
T Consensus 79 ~~~~~i~ka~i~~gv~yvDt-s~~~~~--~~~~~~~a~~Agit~ 119 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDT-SYYEEP--PWKLDEEAKKAGITA 119 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEc-ccCCch--hhhhhHHHHHcCeEE
Confidence 99999999999999999875 655544 377777777766543
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0016 Score=59.06 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=65.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee---------------------cC-ccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH---------------------LG-LPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i---------------------~G-vPVy~Sv~ea~~~~ 115 (182)
+||.|+|. |.||..++..+.+.|.+++ ++|+...-- .+ .| +....+.+++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~~V~--~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~-- 75 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGHEVT--GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR-- 75 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCCeEE--EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--
Confidence 47999998 9999999999999998888 665543110 00 12 455567788777
Q ss_pred CCcEEEEeeChH----------HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHH
Q 030169 116 KANASVIYVPPP----------FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 116 ~~DvaVdfVpp~----------av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~ 160 (182)
++|++++.+|.. .+.+++++..+. .-..+|+..+.+++....++.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 799999999965 356666555443 222344446777666665553
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0021 Score=58.86 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=71.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~ 133 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ ++|+..... ...|+..+.+++|+.. ++|++++.+|-. ....++
T Consensus 199 gktVGIVG~-G~IG~~vA~~L~afG~~V~--~~d~~~~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~lPlt~~T~~li 273 (386)
T PLN03139 199 GKTVGTVGA-GRIGRLLLQRLKPFNCNLL--YHDRLKMDPELEKETGAKFEEDLDAMLP--KCDVVVINTPLTEKTRGMF 273 (386)
T ss_pred CCEEEEEee-cHHHHHHHHHHHHCCCEEE--EECCCCcchhhHhhcCceecCCHHHHHh--hCCEEEEeCCCCHHHHHHh
Confidence 457999998 9999999999999999998 678753211 1236666779999998 799999999943 333443
Q ss_pred HHH-HHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 134 MEA-MEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 134 ~eA-ie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+. ++. +- ..+|+ |.-=..-|.+.|.++.+.--+
T Consensus 274 ~~~~l~~mk~ga~lIN-~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 274 NKERIAKMKKGVLIVN-NARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred CHHHHhhCCCCeEEEE-CCCCchhhHHHHHHHHHcCCc
Confidence 322 222 22 24666 444455566666666554444
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0018 Score=58.34 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=61.8
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+...||+|+|++|.-|+.+.+.+.+.+ .++. .-......|+.+. .+++-+.-.+..+ ++|+++...|...
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~-~las~rsaGk~~~~~~~~~~v~~~~~~~~~--~~D~vf~a~p~~~ 81 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLK-MLASARSAGKKVTFEGRDYTVEELTEDSFD--GVDIALFSAGGSI 81 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEE-EEEccCCCCCeeeecCceeEEEeCCHHHHc--CCCEEEECCCcHH
Confidence 455789999999999999999998744 5565 3333444454432 2222222223344 7999999999999
Q ss_pred HHHHHHHHHHcCCCEE
Q 030169 129 AAAAIMEAMEAELDLV 144 (182)
Q Consensus 129 v~~a~~eAie~GIk~V 144 (182)
..+.+.++.++|+++|
T Consensus 82 s~~~~~~~~~~g~~VI 97 (344)
T PLN02383 82 SKKFGPIAVDKGAVVV 97 (344)
T ss_pred HHHHHHHHHhCCCEEE
Confidence 9999999999998766
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0015 Score=56.79 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=68.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
++|.|+|. |.||..++..+.+.|.+|. .+|+.....+ ..|.....+..|+.+ ++|++++.+|+.. +.+++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~~V~--v~d~~~~~~~~~~~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGHQLQ--VFDVNPQAVDALVDKGATPAASPAQAAA--GAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHc
Confidence 37999998 9999999999999898887 6666542111 136778889999888 7899999999986 444432
Q ss_pred H--HHHcCC---CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 E--AMEAEL---DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 e--Aie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
. -+-+++ +.+|. ++-+++++..++.+..++
T Consensus 77 ~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~ 111 (296)
T PRK15461 77 GENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQA 111 (296)
T ss_pred CcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH
Confidence 1 122222 24555 444556666666655543
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0024 Score=56.96 Aligned_cols=101 Identities=20% Similarity=0.150 Sum_probs=67.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~eA 136 (182)
.++|.|+|+ |++|+.+++.+...|++|+ +.|+.... ....+....+++|+.+ ++|++++.+|... +...+.+.
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~G~~V~--~~d~~~~~-~~~~~~~~~~l~ell~--~aDiVil~lP~t~~t~~li~~~ 219 (330)
T PRK12480 146 NMTVAIIGT-GRIGAATAKIYAGFGATIT--AYDAYPNK-DLDFLTYKDSVKEAIK--DADIISLHVPANKESYHLFDKA 219 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE--EEeCChhH-hhhhhhccCCHHHHHh--cCCEEEEeCCCcHHHHHHHhHH
Confidence 457999999 9999999999999999999 77776532 1122334458999988 8999999999664 23333332
Q ss_pred HHcCC---CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 137 MEAEL---DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 137 ie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.-..+ ..+|+++-|--+ |...|.++-+.
T Consensus 220 ~l~~mk~gavlIN~aRG~~v-d~~aL~~aL~~ 250 (330)
T PRK12480 220 MFDHVKKGAILVNAARGAVI-NTPDLIAAVND 250 (330)
T ss_pred HHhcCCCCcEEEEcCCcccc-CHHHHHHHHHc
Confidence 22222 257775666555 44444444433
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0031 Score=59.11 Aligned_cols=102 Identities=9% Similarity=-0.001 Sum_probs=68.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------EecC--ccccccHHHHHhcc-CCcEEEEeeChH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------EHLG--LPVFNSVAEAKAET-KANASVIYVPPP- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------~i~G--vPVy~Sv~ea~~~~-~~DvaVdfVpp~- 127 (182)
.+|.|+|. |.||+.++..+.+.|.+|. +.|.....- ...| +-.+++++|+.+.. ++|++++.+|+.
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~~V~--v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~ 78 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGFKIS--VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGE 78 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChH
Confidence 46999998 9999999999999999888 555543210 0114 33688999998743 589888887666
Q ss_pred HHHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 128 FAAAAIMEAMEA---ELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 128 av~~a~~eAie~---GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.+.+++++.+.. | +.|+-.+++.+..-.....++.+
T Consensus 79 ~v~~vi~~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~ 117 (470)
T PTZ00142 79 AVDETIDNLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEE 117 (470)
T ss_pred HHHHHHHHHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 555665554432 3 34555466666655555555543
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0033 Score=55.67 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=68.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCc-cccccHHHHHhccCCcEEEEeeChHHHH-HHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGL-PVFNSVAEAKAETKANASVIYVPPPFAA-AAIM- 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~Gv-PVy~Sv~ea~~~~~~DvaVdfVpp~av~-~a~~- 134 (182)
..+|.|+|. |++|+.+++.+..+|++|+ ++|+.... .++ +.+.+++|+.+ ++|++++.+|-...- ..+.
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~afG~~V~--~~~r~~~~---~~~~~~~~~l~ell~--~aDiv~~~lp~t~~T~~li~~ 193 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAKAFGMNIY--AYTRSYVN---DGISSIYMEPEDIMK--KSDFVLISLPLTDETRGMINS 193 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCCCcc---cCcccccCCHHHHHh--hCCEEEECCCCCchhhcCcCH
Confidence 466999999 9999999999989999999 88876422 233 34789999998 799999999965433 2322
Q ss_pred HHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 135 EAMEA-E-LDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 135 eAie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.++. + =..+|+++.|=.+ |...|.++.++-
T Consensus 194 ~~l~~mk~ga~lIN~sRG~~v-d~~aL~~aL~~g 226 (303)
T PRK06436 194 KMLSLFRKGLAIINVARADVV-DKNDMLNFLRNH 226 (303)
T ss_pred HHHhcCCCCeEEEECCCcccc-CHHHHHHHHHcC
Confidence 22222 1 1357775666555 555555554433
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00066 Score=58.55 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=59.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEee----------ChH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV----------PPP- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfV----------pp~- 127 (182)
|||+|.|++|-.|+.+.+.+.+.|.+++ +.+... .++.-.+.+++.+++.+||++|... .|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~--~~~r~~-----~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~ 73 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVI--ATSRSD-----LDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEE 73 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEE--EESTTC-----S-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEE--EeCchh-----cCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhh
Confidence 6999999999999999999999888888 555542 2244455678888877899999885 332
Q ss_pred -------HHHHHHHHHHHcCCCEEEEeC
Q 030169 128 -------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 128 -------av~~a~~eAie~GIk~VV~iT 148 (182)
.+..+++.|.+.|++.|..-|
T Consensus 74 a~~iN~~~~~~la~~~~~~~~~li~~ST 101 (286)
T PF04321_consen 74 AYAINVDATKNLAEACKERGARLIHIST 101 (286)
T ss_dssp HHHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred hHHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence 334577888899999998755
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0016 Score=63.25 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=61.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+.+||.|+|+ |.||+.+++.+.+.|.+|+ ++++...... ..|+..+.+.+|+.+. .+|++++.+|+....++++
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G~~V~--~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~aDvVILavP~~~~~~vi~ 443 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQGHTVL--AYSRSDYSDEAQKLGVSYFSDADDLCEE-HPEVILLCTSILSTEKVLK 443 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCcCEEE--EEECChHHHHHHHcCCeEeCCHHHHHhc-CCCEEEECCChHHHHHHHH
Confidence 5588999997 9999999999999898888 6666532111 2366678888887652 4899999999999999888
Q ss_pred HHHH
Q 030169 135 EAME 138 (182)
Q Consensus 135 eAie 138 (182)
+...
T Consensus 444 ~l~~ 447 (667)
T PLN02712 444 SLPF 447 (667)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0029 Score=55.22 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=63.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--------C--CeE-e------cCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--------G--GTE-H------LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--------~--G~~-i------~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
+||.|+|+ |.||..+...+.+.|-+|. .+++.. . +.. . .+++++.+.+++.. .++|+++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~~V~--l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~Dlii 76 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKISVN--LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-DNATCII 76 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCeEE--EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-CCCCEEE
Confidence 47999999 9999999999998885555 333321 0 101 1 13446677777652 1689999
Q ss_pred EeeChHHHHHHHHHHHH-c-C-CCEEEEeCCCCCH
Q 030169 122 IYVPPPFAAAAIMEAME-A-E-LDLVVCITEGIPQ 153 (182)
Q Consensus 122 dfVpp~av~~a~~eAie-~-G-Ik~VV~iTeG~~~ 153 (182)
++||+....+++++... . + -..|+..+-|+..
T Consensus 77 iavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 77 LAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 99999999999998775 3 2 2246667999955
|
|
| >TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=57.19 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=65.8
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccC--CCCCeEecCccccccHHH---HHhccCCcEEEEeeChH--
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTP--KKGGTEHLGLPVFNSVAE---AKAETKANASVIYVPPP-- 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp--~~~G~~i~GvPVy~Sv~e---a~~~~~~DvaVdfVpp~-- 127 (182)
..|++|+|+ |..|..+.+.+.+ +|.+++ |-+|. .+.++. .|+||+.+.++ ..+++++|.+++..|..
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vv-G~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~ 204 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVV-GFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAE 204 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEE-EEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccH
Confidence 367999998 9999999888764 458898 76654 343434 79999988555 45667899999999874
Q ss_pred -HHHHHHHHHHHcCCCEEEE
Q 030169 128 -FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 -av~~a~~eAie~GIk~VV~ 146 (182)
...+.+++|-+.|++..+.
T Consensus 205 ~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 205 DRILELLDALEDLTVDVRLV 224 (451)
T ss_pred HHHHHHHHHHHhcCCEEEEe
Confidence 4567888888889987765
|
Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0024 Score=57.56 Aligned_cols=85 Identities=19% Similarity=0.138 Sum_probs=64.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHH--hC-CceEEeeccCCCCCeEec----CccccccHHHHH-hccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE--YG-TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAK-AETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~--~g-~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~-~~~~~DvaVdfVpp~a 128 (182)
+..||+|+|+||--|+++.+.+.+ +. .++. .-......|+.+. ++++. ++++.. + ++|+++...|+..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~-~laS~~saG~~~~~~~~~~~v~-~~~~~~~~--~~Dvvf~a~p~~~ 78 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELY-ALASEESAGETLRFGGKSVTVQ-DAAEFDWS--QAQLAFFVAGREA 78 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEE-EEEccCcCCceEEECCcceEEE-eCchhhcc--CCCEEEECCCHHH
Confidence 467899999999999999999998 33 7777 4444445565542 34444 444432 3 6899999999999
Q ss_pred HHHHHHHHHHcCCCEEE
Q 030169 129 AAAAIMEAMEAELDLVV 145 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV 145 (182)
+.+.+.++.++|+++|=
T Consensus 79 s~~~~~~~~~~g~~VID 95 (336)
T PRK08040 79 SAAYAEEATNAGCLVID 95 (336)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 99999999999997653
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00038 Score=56.28 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=65.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHH-----H
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF-----A 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-----v 129 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ ++||.....+ ..++ -+.+++|+.+ .+|++++..|-.. .
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~~fG~~V~--~~d~~~~~~~~~~~~~~-~~~~l~ell~--~aDiv~~~~plt~~T~~li 109 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLKAFGMRVI--GYDRSPKPEEGADEFGV-EYVSLDELLA--QADIVSLHLPLTPETRGLI 109 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHHHTT-EEE--EEESSCHHHHHHHHTTE-EESSHHHHHH--H-SEEEE-SSSSTTTTTSB
T ss_pred CCEEEEEEE-cCCcCeEeeeeecCCceeE--EecccCChhhhcccccc-eeeehhhhcc--hhhhhhhhhccccccceee
Confidence 467999999 9999999999999999999 8888874322 2244 5679999999 7999999999432 2
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+.....++.|. .+|+++-|=-+ |.+.|.++-+.-.
T Consensus 110 ~~~~l~~mk~ga-~lvN~aRG~~v-de~aL~~aL~~g~ 145 (178)
T PF02826_consen 110 NAEFLAKMKPGA-VLVNVARGELV-DEDALLDALESGK 145 (178)
T ss_dssp SHHHHHTSTTTE-EEEESSSGGGB--HHHHHHHHHTTS
T ss_pred eeeeeeccccce-EEEeccchhhh-hhhHHHHHHhhcc
Confidence 222222333232 57775655433 4444444444333
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0018 Score=57.48 Aligned_cols=95 Identities=20% Similarity=0.159 Sum_probs=65.3
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC---------------CeEe-cCccccccHHHHHhccCCcE
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG---------------GTEH-LGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~---------------G~~i-~GvPVy~Sv~ea~~~~~~Dv 119 (182)
.+.+||.|+|+ |.||..++..+.+.| .++.-..++... +... ..+.+.++.+++.+ ++|+
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~--~aDl 80 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN--CADV 80 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh--cCCE
Confidence 34589999999 999999999888877 443012222110 1001 12345667777777 7899
Q ss_pred EEEeeChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHH
Q 030169 120 SVIYVPPPFAAAAIMEAMEA-EL-DLVVCITEGIPQH 154 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~-GI-k~VV~iTeG~~~e 154 (182)
+++.+|+....+++++.... +- ..++.++-|+...
T Consensus 81 Vilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 81 VVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred EEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 99999999999998887654 22 2466778999864
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0019 Score=55.72 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=64.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------------------------ecCccccccHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------------------------HLGLPVFNSVAEAK 112 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------------------------i~GvPVy~Sv~ea~ 112 (182)
.+|.|+|+ |.||..++..+...|.+|+ .+|+....-+ ..+.-.+.+-.++.
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAGMDVW--LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL 81 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence 57999999 9999999999999998888 6665542110 00112233333445
Q ss_pred hccCCcEEEEeeC--hHHHHHHHHHHHHc-CCCEEE-EeCCCCCHHHHHHHHH
Q 030169 113 AETKANASVIYVP--PPFAAAAIMEAMEA-ELDLVV-CITEGIPQHDMVINFT 161 (182)
Q Consensus 113 ~~~~~DvaVdfVp--p~av~~a~~eAie~-GIk~VV-~iTeG~~~eD~~~l~~ 161 (182)
+ ++|+++..+| +..-..+..+..+. .-..++ ..|.+++..++.+...
T Consensus 82 ~--~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~ 132 (295)
T PLN02545 82 R--DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQ 132 (295)
T ss_pred C--CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC
Confidence 5 7999999999 66666666554432 222344 3589999888766543
|
|
| >TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.004 Score=56.76 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=66.3
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccCCCC-CeEecCccccccHHH---HHhccCCcEEEEeeChHH--
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTPKKG-GTEHLGLPVFNSVAE---AKAETKANASVIYVPPPF-- 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp~~~-G~~i~GvPVy~Sv~e---a~~~~~~DvaVdfVpp~a-- 128 (182)
..|++|+|+ |..|..+.+.+.+ .|.+++ |-+|.... +..+.|+||+.++++ ..+++++|.+++..|...
T Consensus 125 ~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vv-G~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~ 202 (445)
T TIGR03025 125 LRRVLIVGT-GEAARELAAALSRNPDLGYRVV-GFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEA 202 (445)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhhCccCCeEEE-EEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHH
Confidence 467999998 9999999888763 458899 76775432 235779999988655 456678999999887643
Q ss_pred -HHHHHHHHHHcCCCEEEE
Q 030169 129 -AAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 129 -v~~a~~eAie~GIk~VV~ 146 (182)
..+.+++|-+.|++..+.
T Consensus 203 ~~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 203 RILELLLQLRDLGVDVRLV 221 (445)
T ss_pred HHHHHHHHHHhcCCEEEEe
Confidence 457888999999987665
|
Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0031 Score=57.19 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=63.5
Q ss_pred CCceEEEEccCCCCchhhhHHHH-HhCCc---eEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAI-EYGTK---MVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~-~~g~~---IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+..||.|+|+||--|+.+.+.+. +..++ +. ........|+.+. .+.+.+.-.+..+ ++|+++...|...
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~-~~aS~~saGk~~~~~~~~l~v~~~~~~~~~--~~Divf~a~~~~~ 80 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVT-LLSSKRSAGKTVQFKGREIIIQEAKINSFE--GVDIAFFSAGGEV 80 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEE-EEECcccCCCCeeeCCcceEEEeCCHHHhc--CCCEEEECCChHH
Confidence 45789999999999999999998 56676 65 4445555565442 3444433223334 7999999999999
Q ss_pred HHHHHHHHHHcCCCEE
Q 030169 129 AAAAIMEAMEAELDLV 144 (182)
Q Consensus 129 v~~a~~eAie~GIk~V 144 (182)
..+.+..+.++|.++|
T Consensus 81 s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 81 SRQFVNQAVSSGAIVI 96 (347)
T ss_pred HHHHHHHHHHCCCEEE
Confidence 9999999999997666
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0033 Score=57.19 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=69.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC---------CceEEeeccCCCCCe-------------E-ec------Ccccccc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG---------TKMVVGGVTPKKGGT-------------E-HL------GLPVFNS 107 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g---------~~IV~AgVdp~~~G~-------------~-i~------GvPVy~S 107 (182)
..+||.|.|+ |.+|++++..+-+.+ ..++ +-++...++ . .. ++.+.++
T Consensus 10 ~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw--~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 10 GPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMW--VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEE--EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 3478999999 999999999887654 2344 444321000 0 11 3334566
Q ss_pred HHHHHhccCCcEEEEeeChHHHHHHHHHHHH--c--CCCEEEEeCCCCCHHHH--HHHHHHh
Q 030169 108 VAEAKAETKANASVIYVPPPFAAAAIMEAME--A--ELDLVVCITEGIPQHDM--VINFTRV 163 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVpp~av~~a~~eAie--~--GIk~VV~iTeG~~~eD~--~~l~~~a 163 (182)
++++++ +.|++++.|||....+++.+... . .-..+|.++.|+..++- ..+.+..
T Consensus 87 l~eav~--~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi 146 (365)
T PTZ00345 87 LKEAVE--DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVI 146 (365)
T ss_pred HHHHHh--cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHH
Confidence 888888 89999999999999999999865 2 12256767999986653 3344443
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0042 Score=53.93 Aligned_cols=86 Identities=21% Similarity=0.130 Sum_probs=62.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccc------cHHHHHhccCCcEEEEeeChHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFN------SVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~------Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
+||+|.|+||- |+.+++.+.+.|.+++ +-+.-....+. ..+.||.. ++.+.+.++++|++||.++|-+.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~-~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEIL-VTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAA 78 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEE-EEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHH
Confidence 58999999995 9999999999998888 43322222211 22456653 26667777789999999999875
Q ss_pred H---HHHHHHHHcCCCEEEE
Q 030169 130 A---AAIMEAMEAELDLVVC 146 (182)
Q Consensus 130 ~---~a~~eAie~GIk~VV~ 146 (182)
. .+.+-|.+.||+.+=.
T Consensus 79 ~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 79 QITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHHHHhCCcEEEE
Confidence 3 6677777889988743
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0038 Score=55.83 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=70.6
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-ecCccc----cccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-HLGLPV----FNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i~GvPV----y~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+|.|+|. |.||..+++.+.+.|.++.+-+.++...... ..++.+ ..+++++.+ ++|++++.+|+....+++.
T Consensus 2 ~I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~aDlVilavP~~~~~~vl~ 78 (359)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAA--EADLIVLAVPVDATAALLA 78 (359)
T ss_pred eEEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhc--CCCEEEEeCCHHHHHHHHH
Confidence 6899998 9999999999999886555236666542110 112333 345677766 7999999999999988888
Q ss_pred HHHHc--CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 135 EAMEA--ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
+.... .-..+|.-..+++..-...+.++
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 77642 33345555788888777777766
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0024 Score=57.21 Aligned_cols=81 Identities=17% Similarity=0.107 Sum_probs=56.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec--C--ccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL--G--LPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~--G--vPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
||+|+|++|.-|+.+++.+.+.+ .+++ ........|+.+. | +.+.+.-.+..+ ++|+++..+|.....+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~-~~as~~~~g~~~~~~~~~~~~~~~~~~~~~--~~D~v~~a~g~~~s~~~ 77 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLV-LLASDRSAGRKVTFKGKELEVNEAKIESFE--GIDIALFSAGGSVSKEF 77 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEE-EEeccccCCCeeeeCCeeEEEEeCChHHhc--CCCEEEECCCHHHHHHH
Confidence 58999999999999999988855 4444 2223334444332 2 222222122234 79999999999999999
Q ss_pred HHHHHHcCCCE
Q 030169 133 IMEAMEAELDL 143 (182)
Q Consensus 133 ~~eAie~GIk~ 143 (182)
+..++++|.++
T Consensus 78 a~~~~~~G~~V 88 (339)
T TIGR01296 78 APKAAKCGAIV 88 (339)
T ss_pred HHHHHHCCCEE
Confidence 99999999853
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0017 Score=61.23 Aligned_cols=93 Identities=13% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC-----CCCeEe---cCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK-----KGGTEH---LGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~-----~~G~~i---~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+..+|+|+|+ |.+|+.++.+|...|.+++ -|+-++ ..+.+. .|+++ .+++|+.+ +.|++++.+|-..
T Consensus 35 kgKtIaIIGy-GSqG~AqAlNLrdSGvnVv-vglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~--~ADvVviLlPDt~ 109 (487)
T PRK05225 35 KGKKIVIVGC-GAQGLNQGLNMRDSGLDIS-YALRKEAIAEKRASWRKATENGFKV-GTYEELIP--QADLVINLTPDKQ 109 (487)
T ss_pred CCCEEEEEcc-CHHHHHHhCCCccccceeE-EeccccccccccchHHHHHhcCCcc-CCHHHHHH--hCCEEEEcCChHH
Confidence 3578999999 9999999999999999888 555443 222122 57887 57999988 8999999999995
Q ss_pred HHHHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030169 129 AAAAIMEAMEAELD--LVVCITEGIPQHD 155 (182)
Q Consensus 129 v~~a~~eAie~GIk--~VV~iTeG~~~eD 155 (182)
+..+.+.+....+ ..++++-||..+.
T Consensus 110 -q~~v~~~i~p~LK~Ga~L~fsHGFni~~ 137 (487)
T PRK05225 110 -HSDVVRAVQPLMKQGAALGYSHGFNIVE 137 (487)
T ss_pred -HHHHHHHHHhhCCCCCEEEecCCceeee
Confidence 6666666666554 4888899988663
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0073 Score=52.09 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=58.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccC-CCCCe-EecCcccc-------ccHHHHHhccCCcEEEEeeChH--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP-KKGGT-EHLGLPVF-------NSVAEAKAETKANASVIYVPPP-- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp-~~~G~-~i~GvPVy-------~Sv~ea~~~~~~DvaVdfVpp~-- 127 (182)
|||+|.|++|..|+.+++.+.+.|.+|. +.+-. .+... ...++.++ .++.++++ ++|+++..++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~-~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~ 77 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVR-CLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPS 77 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEE-EEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCC
Confidence 4799999999999999999999999988 55422 11100 01123222 23566666 789988765421
Q ss_pred -----------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 128 -----------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 128 -----------av~~a~~eAie~GIk~VV~iTe 149 (182)
....+++.|.++|++.+|.+++
T Consensus 78 ~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 78 DLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2355677777889988876554
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0033 Score=54.53 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=66.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeE---ecCc--cccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTE---HLGL--PVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~---i~Gv--PVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
++|.|+|+ |.||..++..+.+.|. +|+ ++++...-.+ ..|+ .+..+.+++.+ ++|++++.+|+....+
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~--~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvViiavp~~~~~~ 81 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIV--GADRSAETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGASGA 81 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEE--EEECCHHHHHHHHhCCCCceecCCHHHHhc--CCCEEEECCCHHHHHH
Confidence 57999997 9999999999998884 555 6666532100 0122 34567777776 7999999999998888
Q ss_pred HHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 132 AIMEAMEA-ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 132 a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
++++.... .-..+|....++...-+..+.+.
T Consensus 82 v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~ 113 (307)
T PRK07502 82 VAAEIAPHLKPGAIVTDVGSVKASVIAAMAPH 113 (307)
T ss_pred HHHHHHhhCCCCCEEEeCccchHHHHHHHHHh
Confidence 77765533 22334444666666655555544
|
|
| >TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.005 Score=56.30 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=63.7
Q ss_pred CceEEEEccCCCCchhhhHHHH---HhCCceEEeeccCC--CCCeEecCcccccc--HHHHHhccCCcEEEEeeC---hH
Q 030169 58 NTRVICQGITGKNGTFHTEQAI---EYGTKMVVGGVTPK--KGGTEHLGLPVFNS--VAEAKAETKANASVIYVP---PP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~---~~g~~IV~AgVdp~--~~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVp---p~ 127 (182)
..|++|+|+ |..|..+.+.+. +.|.+++ |-+|.. ..|..+.|+||+.+ +.+..+++++|.+++..| ++
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vv-Gfidd~~~~~~~~i~g~pVlg~~~l~~~i~~~~id~ViIAip~~~~~ 202 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPL-AVVDTDPAASGRLLTGLPVVGADDALRLYARTRYAYVIVAMPGTQAE 202 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEE-EEEeCCccccccccCCCcccChhHHHHHHHhCCCCEEEEecCCccHH
Confidence 357999998 899999988876 3468899 777654 44456789999987 334455578999888887 34
Q ss_pred HHHHHHHHHHHcCC-CEEE
Q 030169 128 FAAAAIMEAMEAEL-DLVV 145 (182)
Q Consensus 128 av~~a~~eAie~GI-k~VV 145 (182)
...+.++.|.+.|+ +..+
T Consensus 203 ~~~~ll~~l~~~~v~~V~~ 221 (456)
T TIGR03022 203 DMARLVRKLGALHFRNVLI 221 (456)
T ss_pred HHHHHHHHHHhCCCeEEEE
Confidence 56678888888888 4433
|
This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0036 Score=53.52 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=61.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeE---ecCcc-ccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTE---HLGLP-VFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~---i~GvP-Vy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+||.|+|. |.||..++..+.+.|. +|+ ++|+.....+ ..|+. .+.+.+++. ++|++++.+|+..+.+.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~--~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aD~Vilavp~~~~~~~ 74 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVY--GYDHNELHLKKALELGLVDEIVSFEELK---KCDVIFLAIPVDAIIEI 74 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHHHHCCCCcccCCHHHHh---cCCEEEEeCcHHHHHHH
Confidence 47999997 9999999999998884 565 6777542110 12432 345677743 48999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHH
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVI 158 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~ 158 (182)
+.+.....-..+|+ ..|....++.+
T Consensus 75 ~~~l~~l~~~~iv~-d~gs~k~~i~~ 99 (275)
T PRK08507 75 LPKLLDIKENTTII-DLGSTKAKIIE 99 (275)
T ss_pred HHHHhccCCCCEEE-ECccchHHHHH
Confidence 88865522122443 34444444443
|
|
| >PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0061 Score=56.85 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=63.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCCeEecCccccccHHHH---HhccCCcEEEEeeChH---HH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGGTEHLGLPVFNSVAEA---KAETKANASVIYVPPP---FA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea---~~~~~~DvaVdfVpp~---av 129 (182)
.+++|+|+ |..|+.+.+.+.+. |.+++ |-+|....++.+.|+||+.+.+++ .+++.+|+ ++..|.. .-
T Consensus 147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vV-GfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r 223 (476)
T PRK15204 147 KKTIILGS-GQNARGAYSALQSEEMMGFDVI-AFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKT 223 (476)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhCccCCcEEE-EEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHH
Confidence 57999998 99999998887743 78999 889876555568899999996643 33345675 6777732 45
Q ss_pred HHHHHHHHHcCCCEEEE
Q 030169 130 AAAIMEAMEAELDLVVC 146 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~ 146 (182)
.+.++++.+.|++.|..
T Consensus 224 ~~il~~l~~~gv~~V~v 240 (476)
T PRK15204 224 HFWLRELSKHHCRSVTV 240 (476)
T ss_pred HHHHHHHhhcCCeEEEE
Confidence 57888888889875443
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0033 Score=58.73 Aligned_cols=95 Identities=22% Similarity=0.246 Sum_probs=66.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----------------------ecC-ccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----------------------HLG-LPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----------------------i~G-vPVy~Sv~ea~~~~ 115 (182)
+||.|+|+ |.||..++..+...|.+|+ ..|+.....+ ..| +.+.++++++.+
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~--v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~-- 79 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVA--VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA-- 79 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence 57999998 9999999999999998887 5555421100 012 567778888888
Q ss_pred CCcEEEEeeChHH-HHHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030169 116 KANASVIYVPPPF-AAAAIMEAMEAELD---LVVCITEGIPQHDMVI 158 (182)
Q Consensus 116 ~~DvaVdfVpp~a-v~~a~~eAie~GIk---~VV~iTeG~~~eD~~~ 158 (182)
++|+++..+|+.. +++.+..-++...+ .|...|.|++..++.+
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~ 126 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE 126 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 8999999999986 33433222333222 5666789999876654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0073 Score=58.82 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=59.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+.++|.|+|+ |+||+.+++.+.+.|.+|+ ++++...-. ...|+..+.+.+|+... ++|++++.+|+....++++
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~G~~V~--~~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~vl~ 126 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQGHTVL--AHSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENVLK 126 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHHHH
Confidence 3468999997 9999999999999998888 566653111 12367778888886542 5899999999999888888
Q ss_pred HHH
Q 030169 135 EAM 137 (182)
Q Consensus 135 eAi 137 (182)
+..
T Consensus 127 ~l~ 129 (667)
T PLN02712 127 SLP 129 (667)
T ss_pred hhh
Confidence 754
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0027 Score=53.14 Aligned_cols=51 Identities=22% Similarity=0.132 Sum_probs=39.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
+||.|+|.+|+||+..++.+.+.|.++. . + ++|++++.+|.....+.+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-~------------------------~--~~DlVilavPv~~~~~~i~~~ 51 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-I------------------------K--KADHAFLSVPIDAALNYIESY 51 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-E------------------------C--CCCEEEEeCCHHHHHHHHHHh
Confidence 4899999999999999999999997754 1 2 566666666666666666553
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0051 Score=54.83 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=71.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~- 133 (182)
..+|.|+|+ |++|+.+++.+..+|++|+ ++|+...... ..+++ +.+++|+.+ +.|++++.+|-.. ....+
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~~~G~~V~--~~d~~~~~~~~~~~~~~-~~~l~ell~--~aDiV~l~lP~t~~T~~~i~ 223 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAKGFGMRIL--YYSRTRKPEAEKELGAE-YRPLEELLR--ESDFVSLHVPLTKETYHMIN 223 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCCCChhhHHHcCCE-ecCHHHHHh--hCCEEEEeCCCChHHhhccC
Confidence 467999999 9999999999999999988 7887643211 12443 568999988 7999999999654 33333
Q ss_pred HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 134 MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 ~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
.+.++. +- ..+|+++.|-.+ |...|.++.++-.++
T Consensus 224 ~~~~~~mk~ga~lIN~aRg~~v-d~~aL~~aL~~g~i~ 260 (333)
T PRK13243 224 EERLKLMKPTAILVNTARGKVV-DTKALVKALKEGWIA 260 (333)
T ss_pred HHHHhcCCCCeEEEECcCchhc-CHHHHHHHHHcCCeE
Confidence 233333 11 346775666555 556666655554443
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.013 Score=53.42 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=57.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..+|.|+|.+|.||+.+++.+.+. +.+|+ |+|+...+ ..+.+++.+ ++|++++.+|.....+.+++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~--g~D~~d~~--------~~~~~~~v~--~aDlVilavPv~~~~~~l~~l 71 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI--GHDPADPG--------SLDPATLLQ--RADVLIFSAPIRHTAALIEEY 71 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEE--EEcCCccc--------cCCHHHHhc--CCCEEEEeCCHHHHHHHHHHH
Confidence 357999999999999999999864 77888 89985422 235677777 799999999999999999998
Q ss_pred HHc
Q 030169 137 MEA 139 (182)
Q Consensus 137 ie~ 139 (182)
...
T Consensus 72 ~~~ 74 (370)
T PRK08818 72 VAL 74 (370)
T ss_pred hhh
Confidence 864
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0043 Score=55.67 Aligned_cols=85 Identities=14% Similarity=0.029 Sum_probs=63.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCC-----------------------CeE--e--cCccccc--
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKG-----------------------GTE--H--LGLPVFN-- 106 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~-----------------------G~~--i--~GvPVy~-- 106 (182)
||.|.|| |+.|+.+.+.+.+.+ ++|+ +-.+.... |+. + ..++++.
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vv-aInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVV-ALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEE-EEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 6899999 999999999888753 8888 64432221 100 1 1355663
Q ss_pred cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++.+ .+.++|+++..+++....+.+..++++|.+.|++
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~ 119 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLF 119 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEe
Confidence 466654 3458999999999999999999999999998888
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=52.54 Aligned_cols=99 Identities=9% Similarity=0.092 Sum_probs=66.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcc---ccccHHHHHhccCCcEEEEeeChHHH-HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLP---VFNSVAEAKAETKANASVIYVPPPFA-AAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvP---Vy~Sv~ea~~~~~~DvaVdfVpp~av-~~a~ 133 (182)
..+|.|+|+ |++|+.+++.+..+|+++. ++++.... ..++- -+.+++|+++ ++|++++.+|-... ...+
T Consensus 136 g~tvgIvG~-G~IG~~vA~~l~afG~~V~--~~~~~~~~--~~~~~~~~~~~~l~e~l~--~aDvvv~~lPlt~~T~~li 208 (312)
T PRK15469 136 DFTIGILGA-GVLGSKVAQSLQTWGFPLR--CWSRSRKS--WPGVQSFAGREELSAFLS--QTRVLINLLPNTPETVGII 208 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEeCCCCC--CCCceeecccccHHHHHh--cCCEEEECCCCCHHHHHHh
Confidence 467999999 9999999999999999999 78875422 11211 2457889888 89999999996544 3333
Q ss_pred HH-HHHc---CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 ME-AMEA---ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 ~e-Aie~---GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.+ .++. | ..+|+++-|--+ |.+.|.++-+.
T Consensus 209 ~~~~l~~mk~g-a~lIN~aRG~vV-de~aL~~aL~~ 242 (312)
T PRK15469 209 NQQLLEQLPDG-AYLLNLARGVHV-VEDDLLAALDS 242 (312)
T ss_pred HHHHHhcCCCC-cEEEECCCcccc-CHHHHHHHHhc
Confidence 32 2222 3 357786666555 44444444433
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.01 Score=52.62 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=58.9
Q ss_pred ceEEEE----ccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------------ecCcc-ccccHHH---HHhccC
Q 030169 59 TRVICQ----GITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------------HLGLP-VFNSVAE---AKAETK 116 (182)
Q Consensus 59 trViVv----G~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------------i~GvP-Vy~Sv~e---a~~~~~ 116 (182)
+||+|. |++|..|+.+++.+.+.|.+|+ +++....... ..++. +..++.+ ++...+
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~--~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~ 130 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVT--LFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG 130 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEE--EEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence 679999 9999999999999999998888 4443321100 01232 2334443 443347
Q ss_pred CcEEEEeeC--hHHHHHHHHHHHHcCCCEEEEeC
Q 030169 117 ANASVIYVP--PPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 117 ~DvaVdfVp--p~av~~a~~eAie~GIk~VV~iT 148 (182)
+|+++.... ...+..+++.|.+.|++.+|.++
T Consensus 131 ~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 131 FDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 899988754 33466777778889998776544
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.007 Score=53.48 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHH-HHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av-~~a~~eA 136 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ ++||.... ...+++ |.+++|+++ +.|++++.+|-... ...+.+.
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~~fgm~V~--~~d~~~~~-~~~~~~-~~~l~ell~--~sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQAFGAKVV--YYSTSGKN-KNEEYE-RVSLEELLK--TSDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhcCCEEE--EECCCccc-cccCce-eecHHHHhh--cCCEEEEeCCCCchhhcccCHH
Confidence 356999999 9999999999999999999 88886422 223454 668999998 79999999995432 2222222
Q ss_pred -HHc-CC-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 137 -MEA-EL-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 137 -ie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++. +- ..+|+++-|=-+ |.+.|.++-+.
T Consensus 218 ~~~~Mk~~a~lIN~aRG~vV-De~AL~~AL~~ 248 (311)
T PRK08410 218 ELKLLKDGAILINVGRGGIV-NEKDLAKALDE 248 (311)
T ss_pred HHHhCCCCeEEEECCCcccc-CHHHHHHHHHc
Confidence 222 21 235664444333 44444444433
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0068 Score=54.61 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=66.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhC--------CceEEeec-------------cCCCCCeE-ecC------ccccccHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG--------TKMVVGGV-------------TPKKGGTE-HLG------LPVFNSVAEA 111 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g--------~~IV~AgV-------------dp~~~G~~-i~G------vPVy~Sv~ea 111 (182)
||.|.|+ |.+|++++..+-+.| -+|..=+. +..+.... ..| +...++++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 5899999 999999999887644 33330022 11111101 112 3366789998
Q ss_pred HhccCCcEEEEeeChHHHHHHHHHHHHc---CCCEEEEeCCCCCHH--HHHHHHHHhc
Q 030169 112 KAETKANASVIYVPPPFAAAAIMEAMEA---ELDLVVCITEGIPQH--DMVINFTRVN 164 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av~~a~~eAie~---GIk~VV~iTeG~~~e--D~~~l~~~ak 164 (182)
++ +.|++++.+|+....+++.+.-.. +. .+|.+|.|+..+ ....+-+..+
T Consensus 80 l~--~ADiIIlAVPs~~i~~vl~~l~~~l~~~~-~iVs~tKGie~~~~~~~~~se~i~ 134 (342)
T TIGR03376 80 AK--GADILVFVIPHQFLEGICKQLKGHVKPNA-RAISCIKGLEVSKDGVKLLSDIIE 134 (342)
T ss_pred Hh--cCCEEEEECChHHHHHHHHHHHhhcCCCC-EEEEEeCCcccCCCcCccHHHHHH
Confidence 88 899999999999999988886543 33 456669999877 4444444443
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0035 Score=56.57 Aligned_cols=85 Identities=19% Similarity=0.138 Sum_probs=66.8
Q ss_pred EEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCC--------------------e--EecCccccccHHHHHhccCC
Q 030169 61 VICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGG--------------------T--EHLGLPVFNSVAEAKAETKA 117 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G--------------------~--~i~GvPVy~Sv~ea~~~~~~ 117 (182)
|.|.|+ |+.|+.+++.+.+ .++++| |-.|+.... . +-.+++++.+++|+++ ++
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elV-aVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~v 76 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLV-GVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KV 76 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEE-EEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cC
Confidence 578999 9999999998764 458999 655533210 0 1135888889999987 79
Q ss_pred cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 118 NASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 118 DvaVdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
|++++.+|........+..++.|.+.|+.-.+
T Consensus 77 DiVve~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 77 DIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred CEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 99999999999999999999999999987333
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.009 Score=53.17 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=60.4
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe----------cCccccccHHHHHhccCCcEEEE
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH----------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i----------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
.+++.++||+|.|++|-.|+.+++.+.+.|.+|+ +++........ .++.-..++.++++ ++|+++.
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~--~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih 91 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYII--ASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFN 91 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEE--EEEeccccccccccccceEEECCCCCHHHHHHHHh--CCCEEEE
Confidence 3566789999999999999999999999998888 55533211100 12211122334444 6899888
Q ss_pred eeCh-------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 123 YVPP-------------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 123 fVpp-------------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
+... .....+++.|.+++++.+|.+++
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 8621 12345667777889988776543
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0049 Score=56.43 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=66.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-----HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-----AAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-----v~~a 132 (182)
..+|.|+|+ |++|+.+++.+..+|++++ +.||.... ...--.|.+++|+++ ++|++++-+|-.. ....
T Consensus 116 gktvGIIG~-G~IG~~vA~~l~a~G~~V~--~~dp~~~~--~~~~~~~~~L~ell~--~sDiI~lh~PLt~~g~~~T~~l 188 (378)
T PRK15438 116 DRTVGIVGV-GNVGRRLQARLEALGIKTL--LCDPPRAD--RGDEGDFRSLDELVQ--EADILTFHTPLFKDGPYKTLHL 188 (378)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCcccc--cccccccCCHHHHHh--hCCEEEEeCCCCCCcccccccc
Confidence 567999999 9999999999999999999 88886532 111124789999998 7999999999543 4444
Q ss_pred HHHHHHcCC---CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 133 IMEAMEAEL---DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 133 ~~eAie~GI---k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+.+..=... ..+|+.+-| ++-|...|.++-+
T Consensus 189 i~~~~l~~mk~gailIN~aRG-~vVDe~AL~~aL~ 222 (378)
T PRK15438 189 ADEKLIRSLKPGAILINACRG-AVVDNTALLTCLN 222 (378)
T ss_pred cCHHHHhcCCCCcEEEECCCc-hhcCHHHHHHHHH
Confidence 433322222 346774444 4445555555443
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0042 Score=58.58 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=71.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-H
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-M 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~-~ 134 (182)
.+|.|+|. |++|+.+++.+..+|++|+ ++||..... ...|++.+++++|+.+ ++|++++.+|-.. ...++ .
T Consensus 139 ktvgIiG~-G~IG~~vA~~l~~fG~~V~--~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 139 KTLGVIGL-GRIGSIVAKRAKAFGMKVL--AYDPYISPERAEQLGVELVDDLDELLA--RADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE--EECCCCChhHHHhcCCEEcCCHHHHHh--hCCEEEEccCCChhhccCcCH
Confidence 56999999 9999999999999999999 888853221 1235665678999998 7999999999653 33333 2
Q ss_pred HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 135 EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 135 eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
+.++. +- ..+|+++.|=- -|...|.++-+.-.++
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGI-IDEAALYEALEEGHVR 249 (525)
T ss_pred HHHhcCCCCeEEEEcCCCce-eCHHHHHHHHHcCCee
Confidence 33332 22 24666455544 4556666655554443
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.016 Score=52.33 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=59.0
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-----------EecCcc-------ccccHHHHHhcc--
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-----------EHLGLP-------VFNSVAEAKAET-- 115 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-----------~i~GvP-------Vy~Sv~ea~~~~-- 115 (182)
...++|+|.|++|..|+.+++.+.+.|.+|+ +.+ ....+. ...++. =.++++++.+..
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~-~l~-R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVV-AVA-REKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEE-echhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 3457899999999999999999999999988 543 222110 011221 123355555533
Q ss_pred CCcEEEEeeCh-------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 116 KANASVIYVPP-------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 116 ~~DvaVdfVpp-------------~av~~a~~eAie~GIk~VV~iT 148 (182)
++|+++....+ .....+++.|.+.|++.+|.++
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iS 181 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLS 181 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 58998875432 2245677778888998776655
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0047 Score=56.54 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=66.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-----HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-----AAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-----v~~a 132 (182)
..+|.|+|+ |++|+.+++.+..+|++++ +.||.... ..+..-|.+++|+.+ ++|++++.+|-.. ....
T Consensus 116 gktvGIIG~-G~IG~~va~~l~a~G~~V~--~~Dp~~~~--~~~~~~~~~l~ell~--~aDiV~lh~Plt~~g~~~T~~l 188 (381)
T PRK00257 116 ERTYGVVGA-GHVGGRLVRVLRGLGWKVL--VCDPPRQE--AEGDGDFVSLERILE--ECDVISLHTPLTKEGEHPTRHL 188 (381)
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCEEE--EECCcccc--cccCccccCHHHHHh--hCCEEEEeCcCCCCcccccccc
Confidence 456999999 9999999999999999999 78886532 222234678999988 7999999999642 3444
Q ss_pred HHHHHHcCC---CEEEEeCCCCCHHHHHHHHHH
Q 030169 133 IMEAMEAEL---DLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 133 ~~eAie~GI---k~VV~iTeG~~~eD~~~l~~~ 162 (182)
+.+..=... ..+|+.+-|=.+.+...+.++
T Consensus 189 i~~~~l~~mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 189 LDEAFLASLRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred CCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 333222222 346775555555444444443
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0043 Score=58.04 Aligned_cols=102 Identities=10% Similarity=-0.017 Sum_probs=68.6
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----e----cCccccccHHHHHhcc-CCcEEEEeeCh-HHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----H----LGLPVFNSVAEAKAET-KANASVIYVPP-PFA 129 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----i----~GvPVy~Sv~ea~~~~-~~DvaVdfVpp-~av 129 (182)
+|.++|. |.||..++..+.+.|.+|+ +.|+...-.+ . .++..+++++|+.+.. ++|++++.+|+ ..+
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~~V~--v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v 77 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGFTVS--VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPV 77 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCCeEE--EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHH
Confidence 3788998 9999999999999999888 5555331110 1 1367888999987643 68999999999 566
Q ss_pred HHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 130 AAAIMEAMEA--ELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 130 ~~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.+++++.+.. .=+.||-.++..+........++.+
T Consensus 78 ~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~ 114 (467)
T TIGR00873 78 DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA 114 (467)
T ss_pred HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh
Confidence 6666655543 1135555455566555555555543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0026 Score=57.34 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=64.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE--------------------------ec--Cccccc--c
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE--------------------------HL--GLPVFN--S 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~--------------------------i~--GvPVy~--S 107 (182)
+||.|.|+ ||||+.+.+.+.+. +++|+ |+.+|...-+. ++ .++|+. +
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~~~~~iv-aind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~ 80 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDWPELEFV-QINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA 80 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhCCCcEEE-EecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence 68999999 99999999988865 49999 88875422110 11 344552 3
Q ss_pred HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++..=. ++|+++..+......+.+..++++|.+.|++
T Consensus 81 ~~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 81 IADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred hhhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 5554322 7999999999999999999999999998887
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.013 Score=49.95 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=62.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC-------CCCeEe--------cCccccccHHHHHhccCCcEEEEe
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK-------KGGTEH--------LGLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~-------~~G~~i--------~GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
+||+|+|+ |.+|..++..+.+.|.++. .+++. ..|-.+ ...++.++.+++.+ ++|++++.
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vila 75 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGRDVT--FLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILA 75 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCCceE--EEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEE
Confidence 57999999 9999999999988887766 44441 111111 11223455666545 78999999
Q ss_pred eChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030169 124 VPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 155 (182)
Q Consensus 124 Vpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~eD 155 (182)
+++....+++++.... + =..|+.+.-|+..++
T Consensus 76 vk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~ 109 (305)
T PRK12921 76 VKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLE 109 (305)
T ss_pred ecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHH
Confidence 9999888888777653 2 234555678986443
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0042 Score=58.69 Aligned_cols=107 Identities=11% Similarity=-0.024 Sum_probs=73.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--e-----cCc---cccccHHHHHhcc-CCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--H-----LGL---PVFNSVAEAKAET-KANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i-----~Gv---PVy~Sv~ea~~~~-~~DvaVdfVpp~ 127 (182)
++|.++|. |.||+.++.++.+.|++++ ..|+....-+ . .|. -+++|++|+.+.. .+|+++..+|..
T Consensus 7 ~~IG~IGL-G~MG~~mA~nL~~~G~~V~--V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 7 SRIGLAGL-AVMGQNLALNIAEKGFPIS--VYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCEEEEee-HHHHHHHHHHHHhCCCeEE--EECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 46999998 9999999999999999888 5554321111 0 132 2788999998842 499999999988
Q ss_pred HHHHHH-HHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 128 FAAAAI-MEAMEA-ELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 128 av~~a~-~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+.+.+ +..+.. .-..+++-++-...++..++.+..++-.+
T Consensus 84 ~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi 126 (493)
T PLN02350 84 APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGL 126 (493)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 766554 444433 11224444677777888888777655444
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0086 Score=54.59 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=69.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEec-Ccc---------ccc-cHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHL-GLP---------VFN-SVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~-GvP---------Vy~-Sv~ea~~~~~~DvaVdfVp 125 (182)
..||.|+|++|--|.++.+.+... +.++. ........|+.+. -.| ... +.+++ ...++|+++..+|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~-~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlalP 79 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELI-LISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLALP 79 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEE-EeechhhcCCchHHhCcccccccccccccCChhhh-hcccCCEEEEecC
Confidence 468999999999999999988854 58866 4444443554432 111 111 12232 3336999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
+..+.+.+.+.++.|++ |+=.+.-|..+|.+.-.
T Consensus 80 hg~s~~~v~~l~~~g~~-VIDLSadfR~~d~~~ye 113 (349)
T COG0002 80 HGVSAELVPELLEAGCK-VIDLSADFRLKDPEVYE 113 (349)
T ss_pred chhHHHHHHHHHhCCCe-EEECCcccccCCHHHHH
Confidence 99999999999999999 44447666666544433
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.014 Score=49.60 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=61.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCc-----------cccccHHHHHhccCCcEEEEee
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGL-----------PVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~Gv-----------PVy~Sv~ea~~~~~~DvaVdfV 124 (182)
+||+|+|+ |.+|..++..+.+.|.++. .+++...-. . ..|+ .+.++.+++ + ++|++++.+
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGHDVT--LVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE--EEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEec
Confidence 57999999 9999999999998887766 444421000 0 0133 234455554 4 799999999
Q ss_pred ChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHHH
Q 030169 125 PPPFAAAAIMEAMEA-EL-DLVVCITEGIPQHD 155 (182)
Q Consensus 125 pp~av~~a~~eAie~-GI-k~VV~iTeG~~~eD 155 (182)
++..+.+++...... +- ..||.+.-|+..++
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 999888888776653 22 25666688987444
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=52.34 Aligned_cols=106 Identities=20% Similarity=0.180 Sum_probs=78.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
+||.++|. |.||.-.++.+.+.|.++.+-..+|.+.-+. ..|..++.|..|+.+ +.|++|..+|.......+...
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~V~~V~~g 77 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAA--EADVVITMLPDDAAVRAVLFG 77 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHH--hCCEEEEecCCHHHHHHHHhC
Confidence 47999998 9999999999999998888334555442111 238999999999998 899999999988777666543
Q ss_pred ---HHcC--CCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 137 ---MEAE--LDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 137 ---ie~G--Ik~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
+-.+ ...+|+--+=++.++..++.+.++.--
T Consensus 78 ~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G 113 (286)
T COG2084 78 ENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG 113 (286)
T ss_pred ccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 2221 223444456688999999988887653
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0075 Score=51.66 Aligned_cols=95 Identities=8% Similarity=0.099 Sum_probs=63.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---------------e------------cCccccccHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---------------H------------LGLPVFNSVAEA 111 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---------------i------------~GvPVy~Sv~ea 111 (182)
.||.|+|+ |.||..++..+...|.+++ .+|+....-+ . .++.+..+.++
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~--~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVV--MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD- 79 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 47999999 9999999999998898888 5554331110 0 03344555654
Q ss_pred HhccCCcEEEEeeChHHH--HHHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030169 112 KAETKANASVIYVPPPFA--AAAIMEAMEAELD---LVVCITEGIPQHDMVINF 160 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av--~~a~~eAie~GIk---~VV~iTeG~~~eD~~~l~ 160 (182)
.+ ++|++++.+|++.. .++..+ ++..++ .++..|.|++..++.+..
T Consensus 80 ~~--~aDlVi~av~e~~~~k~~~~~~-l~~~~~~~~il~s~ts~~~~~~la~~~ 130 (282)
T PRK05808 80 LK--DADLVIEAATENMDLKKKIFAQ-LDEIAKPEAILATNTSSLSITELAAAT 130 (282)
T ss_pred hc--cCCeeeecccccHHHHHHHHHH-HHhhCCCCcEEEECCCCCCHHHHHHhh
Confidence 44 79999999997555 455555 443332 233558899988776544
|
|
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0095 Score=47.67 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=59.4
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCe--------EecC-------------------cccc--ccH
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGT--------EHLG-------------------LPVF--NSV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~--------~i~G-------------------vPVy--~Sv 108 (182)
+||+|.|+ |+||+.+++.+.+ .+++++ +..++..... ..+| ++++ .++
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lv-ai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVV-AINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEE-EeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCCh
Confidence 47999999 9999999998774 569999 8777521110 0111 1222 224
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++ .+.++|++++.+..-...+.+..-+++|.|.|+.
T Consensus 79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred HHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence 4433 3347899999977767777777888899999998
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=49.36 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=56.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH------------
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP------------ 127 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~------------ 127 (182)
||+|.|++|..|+.+++.+.+.|.+++ +++... .++.-..++.++++..++|+++.+....
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~--~~~r~~-----~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~ 73 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVV--ALTSSQ-----LDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKA 73 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEE--EeCCcc-----cCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHH
Confidence 589999999999999999999898888 555432 2343445677777765689999876431
Q ss_pred ------HHHHHHHHHHHcCCCEEEE
Q 030169 128 ------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 ------av~~a~~eAie~GIk~VV~ 146 (182)
....+++.|.+.|.+.|..
T Consensus 74 ~~~n~~~~~~l~~~~~~~~~~~v~~ 98 (287)
T TIGR01214 74 FAVNALAPQNLARAAARHGARLVHI 98 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1344555666778766554
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=53.47 Aligned_cols=104 Identities=14% Similarity=0.045 Sum_probs=69.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~eA 136 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ +.||.... ...++.-..+++|+.+ ..|++++-+|-.. ....+.+.
T Consensus 151 gktvGIiG~-G~IG~~vA~~~~~fGm~V~--~~d~~~~~-~~~~~~~~~~l~ell~--~sDiVslh~Plt~~T~~li~~~ 224 (409)
T PRK11790 151 GKTLGIVGY-GHIGTQLSVLAESLGMRVY--FYDIEDKL-PLGNARQVGSLEELLA--QSDVVSLHVPETPSTKNMIGAE 224 (409)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EECCCccc-ccCCceecCCHHHHHh--hCCEEEEcCCCChHHhhccCHH
Confidence 356999999 9999999999999999999 88886421 2223444568999999 7999999999644 33444332
Q ss_pred HHcCCC---EEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 137 MEAELD---LVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 137 ie~GIk---~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.=..+| .+|+++-|--+ |...|.++-++-.+
T Consensus 225 ~l~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i 258 (409)
T PRK11790 225 ELALMKPGAILINASRGTVV-DIDALADALKSGHL 258 (409)
T ss_pred HHhcCCCCeEEEECCCCccc-CHHHHHHHHHcCCc
Confidence 222222 46775555555 44445444444333
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0055 Score=52.73 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---------------------------ecCccccccHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---------------------------HLGLPVFNSVAEA 111 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---------------------------i~GvPVy~Sv~ea 111 (182)
.||.|+|+ |.||..++..+.+.|.+|+ .+|+...--+ ...+....+++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTT--LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 46999999 9999999999999898888 4554321100 0124456778888
Q ss_pred HhccCCcEEEEeeChHHHH--HHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030169 112 KAETKANASVIYVPPPFAA--AAIMEAMEAELD---LVVCITEGIPQHDMVINF 160 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av~--~a~~eAie~GIk---~VV~iTeG~~~eD~~~l~ 160 (182)
.+ ++|+++..+|.+... .++.+ ++..++ .++.-|+.++..++.+..
T Consensus 79 ~~--~aD~Vi~avpe~~~~k~~~~~~-l~~~~~~~~il~~~tSt~~~~~l~~~~ 129 (288)
T PRK09260 79 VA--DADLVIEAVPEKLELKKAVFET-ADAHAPAECYIATNTSTMSPTEIASFT 129 (288)
T ss_pred hc--CCCEEEEeccCCHHHHHHHHHH-HHhhCCCCcEEEEcCCCCCHHHHHhhc
Confidence 87 899999999988642 33333 333332 232337889988765543
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0064 Score=56.48 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=33.1
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
.-.+.+.|+|+|++|+-|+.+++.+++.|+.+- |+|-...
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vr-a~VRd~~ 114 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVR-ALVRDEQ 114 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCCeee-eeccChh
Confidence 344567799999999999999999999998888 7765543
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.01 Score=52.54 Aligned_cols=82 Identities=20% Similarity=0.151 Sum_probs=66.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEe---------------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIY--------------- 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdf--------------- 123 (182)
|||+|.|++|.+|+.+.+.+. .+.+++ ..+... .++--.+++.++.++.+||++|-.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~--a~~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~ 72 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVI--ATDRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPEL 72 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEE--eccCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHH
Confidence 569999999999999999888 557788 444433 457788889999998899999865
Q ss_pred ---eChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 124 ---VPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 124 ---Vpp~av~~a~~eAie~GIk~VV~iT 148 (182)
++...+..+++.|-+.|.++|-+-|
T Consensus 73 A~~vNa~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 73 AFAVNATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred HHHhHHHHHHHHHHHHHHhCCeEEEeec
Confidence 4556677889999999999998744
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0082 Score=56.69 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=69.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~- 133 (182)
..+|.|+|+ |++|+.+++.+..+|++|+ ++||..... ...|+... +++|+.+ ++|++++.+|-. ....++
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~~fG~~V~--~~d~~~~~~~~~~~g~~~~-~l~ell~--~aDiV~l~lP~t~~t~~li~ 213 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAKAFGMKVI--AYDPYISPERAAQLGVELV-SLDELLA--RADFITLHTPLTPETRGLIG 213 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE--EECCCCChhHHHhcCCEEE-cHHHHHh--hCCEEEEccCCChHhhcCcC
Confidence 466999999 9999999999999999999 888853211 12355544 8999988 799999999975 334443
Q ss_pred HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 134 MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 134 ~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+.++. +- ..+|+++-|=.+ |...|.++.+.-.+
T Consensus 214 ~~~l~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i 249 (526)
T PRK13581 214 AEELAKMKPGVRIINCARGGII-DEAALAEALKSGKV 249 (526)
T ss_pred HHHHhcCCCCeEEEECCCCcee-CHHHHHHHHhcCCe
Confidence 222322 11 246665666555 55555555444333
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.016 Score=55.95 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=70.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeE---ecCcc--ccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTE---HLGLP--VFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~---i~GvP--Vy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.||.|+|+ |.||..+++.+.+.|. +|+ ++|+.....+ ..|+. ...+.+++++ ++|++++.+|+....+
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~--~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~ 78 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVV--AVDRRAKSLELAVSLGVIDRGEEDLAEAVS--GADVIVLAVPVLAMEK 78 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEE--EEECChhHHHHHHHCCCCCcccCCHHHHhc--CCCEEEECCCHHHHHH
Confidence 67999997 9999999999998883 666 6777642211 12332 3456777777 7999999999999888
Q ss_pred HHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 132 AIMEAMEA-ELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 132 a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
++.+.... .-..+|....+++..-...+.+..
T Consensus 79 vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~ 111 (735)
T PRK14806 79 VLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF 111 (735)
T ss_pred HHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence 88876653 223455547788866666666553
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.012 Score=52.74 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=58.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..||.|+|++|--|+++.+.+.+.. ++++ +- .... ++.. ...++..+ ++|+++...|...+.+.+.++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~-~~-~s~~-~~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~ 70 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELL-SI-PEAK-RKDA------AARRELLN--AADVAILCLPDDAAREAVALI 70 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEE-EE-ecCC-CCcc------cCchhhhc--CCCEEEECCCHHHHHHHHHHH
Confidence 4689999999999999999998665 8888 43 3222 2211 23334344 699999999999999999999
Q ss_pred HHcCCCEE
Q 030169 137 MEAELDLV 144 (182)
Q Consensus 137 ie~GIk~V 144 (182)
.+.|+++|
T Consensus 71 ~~~g~~VI 78 (313)
T PRK11863 71 DNPATRVI 78 (313)
T ss_pred HhCCCEEE
Confidence 99999765
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.012 Score=50.64 Aligned_cols=84 Identities=17% Similarity=0.106 Sum_probs=56.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC----------hH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP----------PP- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp----------p~- 127 (182)
|||+|.|++|-.|+.+++.+.+.| +++ +++....- ...++.=...+++++++.++|+++-+.- |.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~--~~~~~~~~-~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~ 76 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLI--ALDVHSTD-YCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEF 76 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEE--Eecccccc-ccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHH
Confidence 479999999999999999999888 777 55543211 1123433445667777667898885431 22
Q ss_pred -------HHHHHHHHHHHcCCCEEEE
Q 030169 128 -------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 -------av~~a~~eAie~GIk~VV~ 146 (182)
.+..+++.|.++|++.|..
T Consensus 77 ~~~~N~~~~~~l~~aa~~~g~~~v~~ 102 (299)
T PRK09987 77 AQLLNATSVEAIAKAANEVGAWVVHY 102 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 2345677777889876655
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=52.02 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=65.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME- 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~e- 135 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ ++++.... .. ..+ |.+++|+++ ..|++++.+|-.. ....+..
T Consensus 147 gktvgIiG~-G~IG~~va~~l~~fg~~V~--~~~~~~~~-~~-~~~-~~~l~ell~--~sDiv~l~~Plt~~T~~li~~~ 218 (314)
T PRK06932 147 GSTLGVFGK-GCLGTEVGRLAQALGMKVL--YAEHKGAS-VC-REG-YTPFEEVLK--QADIVTLHCPLTETTQNLINAE 218 (314)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCCEEE--EECCCccc-cc-ccc-cCCHHHHHH--hCCEEEEcCCCChHHhcccCHH
Confidence 357999999 9999999999999999999 67875421 11 122 678999998 7999999999433 2233322
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 136 AMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 136 Aie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.++. +- ..+|+++-| ..-|.+.|.++-+.-.+
T Consensus 219 ~l~~mk~ga~lIN~aRG-~~Vde~AL~~aL~~g~i 252 (314)
T PRK06932 219 TLALMKPTAFLINTGRG-PLVDEQALLDALENGKI 252 (314)
T ss_pred HHHhCCCCeEEEECCCc-cccCHHHHHHHHHcCCc
Confidence 2222 11 235663433 33355555555444333
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.008 Score=51.77 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--e--------------------------EecCccccccHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--T--------------------------EHLGLPVFNSVAE 110 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~--------------------------~i~GvPVy~Sv~e 110 (182)
+||.|+|+ |.||..++..+...|.+|+ .+|+...- + ....+.+..++++
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~--l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVT--IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 57999998 9999999999988898877 55543210 0 0123456778888
Q ss_pred HHhccCCcEEEEeeChH--HHHHHHHHHHHc-CCCEEE-EeCCCCCHHHHHHH
Q 030169 111 AKAETKANASVIYVPPP--FAAAAIMEAMEA-ELDLVV-CITEGIPQHDMVIN 159 (182)
Q Consensus 111 a~~~~~~DvaVdfVpp~--av~~a~~eAie~-GIk~VV-~iTeG~~~eD~~~l 159 (182)
+.+ ++|+++..+|.+ ...+++.+..+. .-+.++ .-|+.++..++.+.
T Consensus 81 a~~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~ 131 (287)
T PRK08293 81 AVK--DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEA 131 (287)
T ss_pred Hhc--CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhh
Confidence 887 899999999955 445555544332 112233 34778877665543
|
|
| >PRK10124 putative UDP-glucose lipid carrier transferase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.019 Score=53.34 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=63.3
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccCCCCCeEecCccccccHHH---HHhccCCcEEEEeeCh---HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTPKKGGTEHLGLPVFNSVAE---AKAETKANASVIYVPP---PF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~e---a~~~~~~DvaVdfVpp---~a 128 (182)
..|++|+|+ |..|..+.+.+.+ .|.+++ |-+|....+ -.++|++.++++ ..+++++|-+++..|. +.
T Consensus 143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vV-GfiDdd~~~--g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~ 218 (463)
T PRK10124 143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVV-GVYHDPKPG--GVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGAR 218 (463)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEE-EEEeCCccc--cCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHH
Confidence 357999998 9999999998874 368899 878755422 124566988655 4566789999999884 44
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 030169 129 AAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~ 146 (182)
..+++++|.+.|++..+.
T Consensus 219 l~ell~~~~~~~v~V~iv 236 (463)
T PRK10124 219 VKKLVRQLADTTCSVLLI 236 (463)
T ss_pred HHHHHHHHHHcCCeEEEe
Confidence 567788888889987665
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=55.66 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=68.5
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC--CCCeEecCcccccc--HHHHHhccCCcEEEEeeCh---H
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK--KGGTEHLGLPVFNS--VAEAKAETKANASVIYVPP---P 127 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~--~~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp---~ 127 (182)
...++++|+|+ |..|..+.+.+...+ +.+| |-+|+. +.|.++.|+|||.+ +.++.+++.+|-+++..|. +
T Consensus 114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV-~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~ 191 (588)
T COG1086 114 DNRIRLLIIGA-GSAGDLLLRALRRDPEYTPV-AFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQE 191 (588)
T ss_pred cCCCceEEEcC-chHHHHHHHHHHhCCCcceE-EEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHH
Confidence 44588999999 999999999888544 8888 877654 67778899999999 5666777888988887774 5
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 030169 128 FAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV 145 (182)
...+..+.+-+.|++.=.
T Consensus 192 ~~~~i~~~l~~~~~~v~~ 209 (588)
T COG1086 192 ERRRILLRLARTGIAVRI 209 (588)
T ss_pred HHHHHHHHHHhcCCcEEe
Confidence 566777777788865533
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.013 Score=53.59 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=58.6
Q ss_pred ceEEEEccCCCCchhhhH-HHHHhCCc---eEEeeccCCCCCeEe---c--CccccccH-HHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTE-QAIEYGTK---MVVGGVTPKKGGTEH---L--GLPVFNSV-AEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k-~~~~~g~~---IV~AgVdp~~~G~~i---~--GvPVy~Sv-~ea~~~~~~DvaVdfVpp~a 128 (182)
++|+|+|+||--|+++.+ .+.+.+++ ++ . +.....|+.. . ...+++.. .+..+ ++|+++...|...
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~-~-~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~--~~Divf~a~~~~~ 77 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPV-F-FSTSQAGGAAPSFGGKEGTLQDAFDIDALK--KLDIIITCQGGDY 77 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEE-E-ecchhhCCcccccCCCcceEEecCChhHhc--CCCEEEECCCHHH
Confidence 579999999999999999 55566776 77 4 4444444333 1 24455422 22234 6999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 030169 129 AAAAIMEAMEAELD 142 (182)
Q Consensus 129 v~~a~~eAie~GIk 142 (182)
+.+.+.++.++|.+
T Consensus 78 s~~~~~~~~~aG~~ 91 (369)
T PRK06598 78 TNEVYPKLRAAGWQ 91 (369)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999999987
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.015 Score=53.21 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=66.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCcccccc-HHHHHhc-------------cCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNS-VAEAKAE-------------TKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~S-v~ea~~~-------------~~~DvaV 121 (182)
+||.|+|. |.||..++..+.+.|.+++ ++|....--+ ...+|++.. +++++.+ .++|+++
T Consensus 4 ~kI~VIGl-G~~G~~~A~~La~~G~~V~--~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGL-GYIGLPTAAAFASRQKQVI--GVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFL 80 (415)
T ss_pred cEEEEECc-chhhHHHHHHHHhCCCEEE--EEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEE
Confidence 68999998 9999999999999999988 6665432111 135666544 5554321 1689999
Q ss_pred EeeCh----------HHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHH
Q 030169 122 IYVPP----------PFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 122 dfVpp----------~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+.+|. ..+.++++....+ .-..+|++.+-++..-..++.+
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~ 131 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE 131 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence 99997 4777776655554 2223555566666666666654
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.012 Score=50.72 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=61.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE------------e-----cC-------------ccccccH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE------------H-----LG-------------LPVFNSV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~------------i-----~G-------------vPVy~Sv 108 (182)
.+|.|+|+ |.||..++..+...|.+|+ .+|+...--+ . .| +...++.
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~~V~--l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGYDVT--IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 57999999 9999999999999998888 5554431100 0 01 1122334
Q ss_pred HHHHhccCCcEEEEeeChHHH-HHHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030169 109 AEAKAETKANASVIYVPPPFA-AAAIMEAMEAELD---LVVCITEGIPQHDMVINF 160 (182)
Q Consensus 109 ~ea~~~~~~DvaVdfVpp~av-~~a~~eAie~GIk---~VV~iTeG~~~eD~~~l~ 160 (182)
++.+ ++|+++..+|+... +..+..-++.-++ .++..|.|++..++.+..
T Consensus 81 -~~~~--~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 81 -ESLS--DADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATAL 133 (291)
T ss_pred -HHhC--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhc
Confidence 3445 79999999998863 4433333444332 345557899888877544
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.015 Score=52.23 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=67.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---------------cCccccccHHHHHhccCCcEEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---------------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---------------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
..+|.|+|+ |++|+.+++.+..+|++|+ ++||....... .+. -+.+++|++. +.|++++
T Consensus 159 gktvGIiG~-G~IG~~vA~~l~afG~~V~--~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~--~aDiVvl 232 (347)
T PLN02928 159 GKTVFILGY-GAIGIELAKRLRPFGVKLL--ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG--EADIVVL 232 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCCEEE--EECCCCChhhhhhhccccccccccccccC-cccCHHHHHh--hCCEEEE
Confidence 467999999 9999999999999999999 78875311100 012 3668999998 7999999
Q ss_pred eeChHH-HHHHHHHHHHcCC---CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 123 YVPPPF-AAAAIMEAMEAEL---DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 123 fVpp~a-v~~a~~eAie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+|-.. ...++.+..=+.+ ..+|+++-| ..-|.+.|.++-+.--+
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG-~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARG-GLLDYDAVLAALESGHL 281 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCc-cccCHHHHHHHHHcCCe
Confidence 999433 2333332222222 247775655 34455555555444333
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0098 Score=51.82 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=60.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCcc-----------------ccccHHHHHhccCCcE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLP-----------------VFNSVAEAKAETKANA 119 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvP-----------------Vy~Sv~ea~~~~~~Dv 119 (182)
+||.|+|+ |.||..++..+.+.|.+|. .+++...-+. ..|+. +..+. +..+ ++|+
T Consensus 3 mkI~IiG~-G~mG~~~A~~L~~~G~~V~--~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~D~ 76 (341)
T PRK08229 3 ARICVLGA-GSIGCYLGGRLAAAGADVT--LIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA--TADL 76 (341)
T ss_pred ceEEEECC-CHHHHHHHHHHHhcCCcEE--EEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc--CCCE
Confidence 67999999 9999999999999898877 5554321000 01222 22334 3344 7999
Q ss_pred EEEeeChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHH
Q 030169 120 SVIYVPPPFAAAAIMEAMEA-EL-DLVVCITEGIPQH 154 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~-GI-k~VV~iTeG~~~e 154 (182)
+++.++.....+++++.... .- ..|+.++.|+...
T Consensus 77 vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 77 VLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 99999999988888766543 11 2355567888754
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.018 Score=51.64 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=57.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.||.|+|++|-.|.++.+.+... .++++ . +..... +..+ +.+++.+ ++|+++...|...+.+.+.++.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~-~-l~s~~~------~~~~-~~~~~~~--~~D~vFlalp~~~s~~~~~~~~ 70 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELL-S-IAPDRR------KDAA-ERAKLLN--AADVAILCLPDDAAREAVSLVD 70 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEE-E-Eecccc------cCcC-CHhHhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence 47999999999999999999854 58888 3 333321 1011 3445555 7999999999999999999999
Q ss_pred HcCCCEE
Q 030169 138 EAELDLV 144 (182)
Q Consensus 138 e~GIk~V 144 (182)
++|+++|
T Consensus 71 ~~g~~VI 77 (310)
T TIGR01851 71 NPNTCII 77 (310)
T ss_pred hCCCEEE
Confidence 9999765
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.018 Score=52.77 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=61.4
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccCCCCCeEecCccccccHHH---HHhccCCcEEEEeeChHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTPKKGGTEHLGLPVFNSVAE---AKAETKANASVIYVPPPFAA- 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~e---a~~~~~~DvaVdfVpp~av~- 130 (182)
..|++|+|+ |..|..+.+.+.+ .|.+++ |-++.......+.|+||+.++++ ..+++++|.+++..|...-.
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vV-Gfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~ 201 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIV-GFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSL 201 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEE-EEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcch
Confidence 467999998 8899888444432 468899 77743222225789999987554 56678899999999865433
Q ss_pred --HHHHHHHHcCCCEEEE
Q 030169 131 --AAIMEAMEAELDLVVC 146 (182)
Q Consensus 131 --~a~~eAie~GIk~VV~ 146 (182)
+.+++|-+.|++..+.
T Consensus 202 ~~~~l~~~~~~gv~V~iv 219 (442)
T TIGR03013 202 PVDELLECKLSGIEVVDA 219 (442)
T ss_pred HHHHHHHHHhCCCEEEEc
Confidence 3467777788877654
|
Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0084 Score=53.68 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=68.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~e 135 (182)
..|-|+|+ |+.|+.+++.+..+|++|+ +.||....+ ...++--..+++++++ +.|++++.+|-.- ...++.+
T Consensus 143 kTvGIiG~-G~IG~~va~~l~afgm~v~--~~d~~~~~~~~~~~~~~~~~~Ld~lL~--~sDiv~lh~PlT~eT~g~i~~ 217 (324)
T COG0111 143 KTVGIIGL-GRIGRAVAKRLKAFGMKVI--GYDPYSPRERAGVDGVVGVDSLDELLA--EADILTLHLPLTPETRGLINA 217 (324)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE--EECCCCchhhhccccceecccHHHHHh--hCCEEEEcCCCCcchhcccCH
Confidence 45999999 9999999999999999999 999944221 2345556688999999 8999999999643 2233322
Q ss_pred H----HHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 136 A----MEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 136 A----ie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
. ++.|. .+|+.+=|- .-|.+.|.++-+.-
T Consensus 218 ~~~a~MK~ga-ilIN~aRG~-vVde~aL~~AL~~G 250 (324)
T COG0111 218 EELAKMKPGA-ILINAARGG-VVDEDALLAALDSG 250 (324)
T ss_pred HHHhhCCCCe-EEEECCCcc-eecHHHHHHHHHcC
Confidence 2 23344 677744443 44444444544443
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.023 Score=54.90 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=59.7
Q ss_pred eeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCC---------------Ce------E--ecCcccccc
Q 030169 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKG---------------GT------E--HLGLPVFNS 107 (182)
Q Consensus 52 ~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~---------------G~------~--i~GvPVy~S 107 (182)
.........|+|.|++|..|+.+++.+++.|.+|+ +.+ ++.+. |. + ..++-=.++
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vv-al~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVR-AGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34444566799999999999999999999999888 432 21110 00 0 012222223
Q ss_pred HHHHHhccCCcEEEEeeCh----------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 108 VAEAKAETKANASVIYVPP----------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVpp----------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
+++++. ++|++|..... ..+..+++.|.++|++.+|.+++
T Consensus 153 I~~aLg--giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 153 IGPALG--NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred HHHHhc--CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 444444 68988876532 13456677777889988887664
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.041 Score=45.98 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=55.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--e---Ee----------cCccccccHHHHHhccCCcEEEEee
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--T---EH----------LGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~---~i----------~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
||+|.|++|..|+.+++.+.+.|.+++ +++..... . .. .++.-..+++++.+..++|+++.+.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~a 78 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVV--VLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFA 78 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEE--EEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECc
Confidence 589999999999999999999898887 44321100 0 00 1222223355655545789988766
Q ss_pred Ch------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 125 PP------------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 125 pp------------------~av~~a~~eAie~GIk~VV~iT 148 (182)
.. ..+..+++.|.+.+++.+|.++
T Consensus 79 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~s 120 (328)
T TIGR01179 79 GLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSS 120 (328)
T ss_pred cccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEec
Confidence 32 1234556667778887777655
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.016 Score=48.94 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC----Ce----------EecCcccccc-----HHHHHhccCCc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG----GT----------EHLGLPVFNS-----VAEAKAETKAN 118 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~----G~----------~i~GvPVy~S-----v~ea~~~~~~D 118 (182)
..||+|||+ |+.|+.+++.+.+.|.++| +..|.... |- +..++..|+. -+++.. .++|
T Consensus 23 g~~vaIqGf-GnVG~~~a~~L~~~G~~vV-~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D 99 (217)
T cd05211 23 GLTVAVQGL-GNVGWGLAKKLAEEGGKVL-AVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDVD 99 (217)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEE-EEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-cccc
Confidence 478999999 9999999999999999888 75554320 10 1123333331 233333 3788
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 119 ASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 119 vaVdfVpp~av~~a~~eAie~GIk~VV~iTeG 150 (182)
+.+-..+.... ..+.+.+.+.+.|+. ...
T Consensus 100 VlipaA~~~~i--~~~~a~~l~a~~V~e-~AN 128 (217)
T cd05211 100 IFAPCALGNVI--DLENAKKLKAKVVAE-GAN 128 (217)
T ss_pred EEeeccccCcc--ChhhHhhcCccEEEe-CCC
Confidence 88877776633 334555668899987 444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.018 Score=49.48 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=59.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe--------------cC-------------ccccccHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH--------------LG-------------LPVFNSVAE 110 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i--------------~G-------------vPVy~Sv~e 110 (182)
.+||.|+|+ |.||..++..+...|.+|+ .+|+....-+. .| +.+-+++++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 80 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGYDVL--LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED 80 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH
Confidence 468999999 9999999999999898888 55543211000 01 334455644
Q ss_pred HHhccCCcEEEEeeChH-HHHHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030169 111 AKAETKANASVIYVPPP-FAAAAIMEAMEAELD---LVVCITEGIPQHDMVI 158 (182)
Q Consensus 111 a~~~~~~DvaVdfVpp~-av~~a~~eAie~GIk---~VV~iTeG~~~eD~~~ 158 (182)
.+ ++|+++..+|.+ .++..+..-++..++ .++.-|.+++..++.+
T Consensus 81 -~~--~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~ 129 (292)
T PRK07530 81 -LA--DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS 129 (292)
T ss_pred -hc--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 44 799999999875 333333333433332 3333588998765433
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.022 Score=52.41 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=57.3
Q ss_pred CCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--e------cCcccc-cc-HHHHHhccCCcE
Q 030169 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--H------LGLPVF-NS-VAEAKAETKANA 119 (182)
Q Consensus 50 ~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i------~GvPVy-~S-v~ea~~~~~~Dv 119 (182)
++-=+-.+.+||+|.|++|-.|+.+++.+++.|.+|+ +++....+.. . ..+..+ .+ +++.+. ++|+
T Consensus 112 ~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~--~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~--~~D~ 187 (436)
T PLN02166 112 VPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVI--VIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILL--EVDQ 187 (436)
T ss_pred CCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEE--EEeCCCCccHhHhhhhccCCceEEEECcccccccc--CCCE
Confidence 3333345569999999999999999999999999998 4543221110 0 011111 12 222333 6888
Q ss_pred EEEeeCh----H--------------HHHHHHHHHHHcCCCEEEE
Q 030169 120 SVIYVPP----P--------------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 120 aVdfVpp----~--------------av~~a~~eAie~GIk~VV~ 146 (182)
++-+.-. . ....+++.|.++|++.|+.
T Consensus 188 ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~ 232 (436)
T PLN02166 188 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLT 232 (436)
T ss_pred EEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 7776521 1 1456777777889876655
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.028 Score=50.89 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=65.8
Q ss_pred ceEEEEccCCCCchhhhHHHHH--------hC--CceEEeeccCCCCCeEecCcccc----------------c-cHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIE--------YG--TKMVVGGVTPKKGGTEHLGLPVF----------------N-SVAEA 111 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~--------~g--~~IV~AgVdp~~~G~~i~GvPVy----------------~-Sv~ea 111 (182)
.+|++.|+ |.-|+.+++.+.+ +| ++|+ +-.+....-....|++.- . ...+.
T Consensus 3 i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~-~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 3 IKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVS-GVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEE-EEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 68999998 9999999887652 24 4455 433432211011122211 1 12222
Q ss_pred H-hccCCcEEEEeeCh-----HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 112 K-AETKANASVIYVPP-----PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 112 ~-~~~~~DvaVdfVpp-----~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
. +..++|++|+.+|. +.+++.+.+|+++|+++|-+ --+.--.+..+|.++|++--+
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTA-NK~~la~~~~eL~~lA~~~g~ 142 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAI-SKGALVTNWREINEAAKIANV 142 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcC-CcHHHhccHHHHHHHHHHcCC
Confidence 2 22258999999886 57889999999999999855 444444555777777765433
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.055 Score=44.92 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=56.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeecc-CCCCCe---EecCcccc-cc----HHHHHhc--cCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT-PKKGGT---EHLGLPVF-NS----VAEAKAE--TKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd-p~~~G~---~i~GvPVy-~S----v~ea~~~--~~~DvaVdfVpp 126 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +.+. +..... +..++.++ -+ .+++.+. .++|+++...+.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~-~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVK-AGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEE-EEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 46899999999999999999998898888 5432 211000 00112211 11 2223222 268999877553
Q ss_pred H--------------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 P--------------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ~--------------av~~a~~eAie~GIk~VV~iTe 149 (182)
. ....+++.+.+.|++.+|.+++
T Consensus 96 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS 132 (251)
T PLN00141 96 RRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSS 132 (251)
T ss_pred CcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2 2456677777788888777664
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.015 Score=52.74 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=67.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCC-----------------CCe--------Ee--cCccccccHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKK-----------------GGT--------EH--LGLPVFNSVA 109 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~-----------------~G~--------~i--~GvPVy~Sv~ 109 (182)
.||.|-|| |+.|+.+.+.+.+.+ +++| |-.+... .++ .+ .++||+.+.+
T Consensus 2 ikV~INGf-GrIGR~v~ra~~~~~~dieVV-aInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 2 IKVAINGF-GRIGRLVARAALERDGDIEVV-AINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred cEEEEecC-cHHHHHHHHHHHhCCCCeEEE-EEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 58999999 999999999888764 9999 6433110 010 11 2799999866
Q ss_pred -HHHh--ccCCcEEEEeeChHHHHHHHHHHHHc-CCCEEEEeCCC
Q 030169 110 -EAKA--ETKANASVIYVPPPFAAAAIMEAMEA-ELDLVVCITEG 150 (182)
Q Consensus 110 -ea~~--~~~~DvaVdfVpp~av~~a~~eAie~-GIk~VV~iTeG 150 (182)
+.+. +..+|++++.+|--.-.+.++.-+++ |.|.|+.-.++
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 5543 34689999999999999999988888 59999884444
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.044 Score=45.42 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=27.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCc-eEEeeccCCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVVGGVTPKKG 95 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~-IV~AgVdp~~~ 95 (182)
+.||+|+|+ |..|..+++.+...|.. |. -+|+...
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg~i~--lvD~d~v 56 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIGSLT--ILDDRTV 56 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCCEEE--EEECCcc
Confidence 467999999 66999999999999944 44 6666643
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.048 Score=46.50 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=66.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCCC----eEecCcccccc--HHHHHhccCCcEEEEeeChHH---
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKGG----TEHLGLPVFNS--VAEAKAETKANASVIYVPPPF--- 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~G----~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp~a--- 128 (182)
|||+|+|++|+.|+.+.+.....|-+++ |-| ||.+.- ..+..--||+- +++.+. +.|++|....+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVT-AivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~~~~~ 77 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVT-AIVRNASKLAARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGAGASDN 77 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeE-EEEeChHhccccccceeecccccChhhhHhhhc--CCceEEEeccCCCCCh
Confidence 6899999999999999999999998888 653 333321 11222334443 446666 7899999876651
Q ss_pred ------HHHHHHHHHHc-CCCEEEEeC----------------CCCCHHHHHHHHHHhc
Q 030169 129 ------AAAAIMEAMEA-ELDLVVCIT----------------EGIPQHDMVINFTRVN 164 (182)
Q Consensus 129 ------v~~a~~eAie~-GIk~VV~iT----------------eG~~~eD~~~l~~~ak 164 (182)
..+.+.++++. |++..+++. ..||.+......+-++
T Consensus 78 ~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~ae 136 (211)
T COG2910 78 DELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAE 136 (211)
T ss_pred hHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHHH
Confidence 12335566666 777654332 5666666555554444
|
|
| >PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.023 Score=43.69 Aligned_cols=86 Identities=23% Similarity=0.285 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccCCC--CCeEecCccccccHHHH---HhccCCcEEEEeeCh---
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTPKK--GGTEHLGLPVFNSVAEA---KAETKANASVIYVPP--- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp~~--~G~~i~GvPVy~Sv~ea---~~~~~~DvaVdfVpp--- 126 (182)
..+..++|. |..|..+.+.+.+ .|.+++ |-+|+.. .+.+..++|++.+++++ .+++++|-+++..|.
T Consensus 77 ~~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vv-g~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~ 154 (175)
T PF13727_consen 77 GRNVLIVGA-GGAGRELAEALRSNPRLGYRVV-GFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEE 154 (175)
T ss_dssp -EEEEEE---SHHHHHHHHHHHH--SSSEEEE-EEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-H
T ss_pred ccceEEEEE-echHHHHHHHHHhhhhcCceEE-EEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCH
Confidence 344566674 6678888887774 568888 7666655 35567899999875554 556799999999765
Q ss_pred HHHHHHHHHHHHcCCCEEE
Q 030169 127 PFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV 145 (182)
+...+++++|-+.|++.-+
T Consensus 155 ~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 155 EQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp HHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 4556778888888887644
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.055 Score=46.30 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=55.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-----------------ecCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-----------------HLGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-----------------i~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
|||+|.|++|-.|+.+++.+.+.|.+|+ + ++....... ..++--..++.++.+..++|+++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVV-I-LDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEE-E-EecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 5799999999999999999999898888 4 432110000 01111112345555544689998
Q ss_pred EeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 122 IYVPP------------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 122 dfVpp------------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
.+... .....+++.|.++|++.+|.+++
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 124 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSS 124 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 87421 02345666677789887775453
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.064 Score=45.15 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=55.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eEec--Cc-------cccccHHHHHhccCCcEEEEeeCh--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TEHL--GL-------PVFNSVAEAKAETKANASVIYVPP-- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~i~--Gv-------PVy~Sv~ea~~~~~~DvaVdfVpp-- 126 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+ +++..... .... ++ --.++++++.+ ++|+++.....
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~vi~~a~~~~ 76 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVR--VLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVA--GCRALFHVAADYR 76 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEE--EEEecCccccccccCCceEEEeeCCCHHHHHHHHh--CCCEEEEeceecc
Confidence 3699999999999999999999998888 43332211 0111 22 12233555555 68888876532
Q ss_pred --------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 --------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 --------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
..+..+++.+.+.+++.+|.+++
T Consensus 77 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 77 LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 12345567777888887776553
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.027 Score=59.10 Aligned_cols=102 Identities=19% Similarity=0.114 Sum_probs=72.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeC-hHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVp-p~av~~a~ 133 (182)
.++|.++|. |.||..+++.+...|.++. +.|+...-.+ -.|....++.+++.+ ++|++++.+| +..+.+++
T Consensus 324 ~~~IGfIGl-G~MG~~mA~~L~~~G~~V~--v~dr~~~~~~~l~~~Ga~~~~s~~e~~~--~aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 324 VKRIGFIGL-GAMGFGMASHLLKSNFSVC--GYDVYKPTLVRFENAGGLAGNSPAEVAK--DVDVLVIMVANEVQAENVL 398 (1378)
T ss_pred CCeEEEECc-hHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEecCChHHHHHHH
Confidence 478999998 9999999999999998888 5555431110 125566789999988 7999999999 77777776
Q ss_pred H---HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 M---EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 ~---eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
. .++.. .- +.+|. .+-+++....++.+..++
T Consensus 399 ~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 399 FGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred hchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh
Confidence 2 23332 11 24444 666777788888776654
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.035 Score=49.17 Aligned_cols=100 Identities=13% Similarity=-0.026 Sum_probs=64.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~eA 136 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ ++++.... ... -+.+++|+++ +.|++++..|-.. ....+.+.
T Consensus 148 gktvgIiG~-G~IG~~vA~~l~~fgm~V~--~~~~~~~~---~~~-~~~~l~ell~--~sDiv~l~lPlt~~T~~li~~~ 218 (317)
T PRK06487 148 GKTLGLLGH-GELGGAVARLAEAFGMRVL--IGQLPGRP---ARP-DRLPLDELLP--QVDALTLHCPLTEHTRHLIGAR 218 (317)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCCEEE--EECCCCCc---ccc-cccCHHHHHH--hCCEEEECCCCChHHhcCcCHH
Confidence 356999999 9999999999999999999 77875322 112 2458999998 7999999999543 33333222
Q ss_pred HHcCC---CEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 137 MEAEL---DLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 137 ie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.=+.+ ..+|+++-|=-+ |...|.++-+.-.
T Consensus 219 ~~~~mk~ga~lIN~aRG~vV-de~AL~~AL~~g~ 251 (317)
T PRK06487 219 ELALMKPGALLINTARGGLV-DEQALADALRSGH 251 (317)
T ss_pred HHhcCCCCeEEEECCCcccc-CHHHHHHHHHcCC
Confidence 22222 246664444444 4444444443333
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.042 Score=48.99 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=67.8
Q ss_pred CceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHH-HHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA-AAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~-~a~ 133 (182)
..++.|+|+ |+.|+.+++.+. .+|++|+ +.+|..... ...++ .|.+++|+++ .+|++++-+|-...- ..+
T Consensus 145 gktvGIiG~-G~IG~~va~~l~~~fgm~V~--~~~~~~~~~~~~~~~~-~~~~l~ell~--~sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 145 HKTLGIVGM-GRIGMALAQRAHFGFNMPIL--YNARRHHKEAEERFNA-RYCDLDTLLQ--ESDFVCIILPLTDETHHLF 218 (323)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHhcCCCEEE--EECCCCchhhHHhcCc-EecCHHHHHH--hCCEEEEeCCCChHHhhcc
Confidence 456999999 999999999998 8999988 677653221 11244 3669999999 899999999954432 222
Q ss_pred H-HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 134 M-EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 ~-eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
. +.+++ +- ..+|+++=| +.-|...|.++-++-.++
T Consensus 219 ~~~~l~~mk~ga~lIN~aRG-~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 219 GAEQFAKMKSSAIFINAGRG-PVVDENALIAALQKGEIH 256 (323)
T ss_pred CHHHHhcCCCCeEEEECCCc-cccCHHHHHHHHHcCCee
Confidence 2 22222 22 236664444 444666666665554443
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.032 Score=58.49 Aligned_cols=103 Identities=19% Similarity=0.114 Sum_probs=72.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
.+||.++|. |.||..+++.+.+.|.++. +.|....-.+ ..|..+.+|++|+.+ .+|+++..+|...+.+.+.
T Consensus 4 ~~~IGfIGL-G~MG~~mA~~L~~~G~~v~--v~dr~~~~~~~l~~~Ga~~~~s~~e~a~--~advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 4 AGVVGFVGL-DSLSFELASSLLRSGFKVQ--AFEISTPLMEKFCELGGHRCDSPAEAAK--DAAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CCeEEEEch-hHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEEcCChHHHHHHH
Confidence 467999998 9999999999999998887 5555432111 137888999999998 7999999999876655442
Q ss_pred ---HHHHcCCC--EEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 ---EAMEAELD--LVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 ---eAie~GIk--~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.+-.+.+ .+|+-.+=++.+...++.+..++
T Consensus 79 ~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~ 114 (1378)
T PLN02858 79 FGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTE 114 (1378)
T ss_pred hchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHh
Confidence 22333332 24443555777777777766654
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.089 Score=45.27 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC----------------CeE----ecCccccccHHHHHhccCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG----------------GTE----HLGLPVFNSVAEAKAETKA 117 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~----------------G~~----i~GvPVy~Sv~ea~~~~~~ 117 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ + ++.... +.. ..++-=..+++++.++.++
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGYKVV-V-IDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-E-EeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 36799999999999999999999998888 4 431110 000 1122222335555554478
Q ss_pred cEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 118 NASVIYVPP------------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 118 DvaVdfVpp------------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
|.++.+... .....+++.|.+.|++.+|.+++
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 998887632 12335666677788887766443
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.066 Score=46.87 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=33.0
Q ss_pred eeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccC
Q 030169 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP 92 (182)
Q Consensus 52 ~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp 92 (182)
..+..+.+||+|.|++|-.|+.+++.+++.|.+|+ +++.
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~--~~d~ 47 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVI--GLDN 47 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHCCCEEE--EEeC
Confidence 34666778999999999999999999999998888 5543
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.036 Score=51.34 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHHH-HH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA-IM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a-~~ 134 (182)
...+|+|+|+ |+.|+.+++.+..+|.++++..+||.+.-. ...|+.+. +++|+.+ +.|++|..+....+.+. ..
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~--~aDVVItaTG~~~vI~~~~~ 269 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAK--IGDIFITATGNKDVIRGEHF 269 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHh--cCCEEEECCCCHHHHHHHHH
Confidence 4568999999 999999999999999998844567754211 11255444 4677776 78999998876554432 22
Q ss_pred HHHHcCCCEEEEeCCCCCH-HHHHHHHHHhc
Q 030169 135 EAMEAELDLVVCITEGIPQ-HDMVINFTRVN 164 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~~-eD~~~l~~~ak 164 (182)
.+++.|- +++.+.++.. =|...|.+++.
T Consensus 270 ~~mK~Ga--iliN~G~~~~eId~~aL~~~~~ 298 (406)
T TIGR00936 270 ENMKDGA--IVANIGHFDVEIDVKALEELAV 298 (406)
T ss_pred hcCCCCc--EEEEECCCCceeCHHHHHHHHh
Confidence 3333333 3333555554 56666666553
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.035 Score=51.69 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHH-HHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~-a~~ 134 (182)
...+|+|+|+ |.+|+.+++.+...|.+|++..++|.+.-. ...|+.+. +++++.+ .+|+++..+....+.+ -..
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~eal~--~aDVVI~aTG~~~vI~~~~~ 286 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TMEEAAE--LGDIFVTATGNKDVITAEHM 286 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHHHHHh--CCCEEEECCCCHHHHHHHHH
Confidence 4567999998 999999999999999998855677765321 11255543 5788877 7999999986544333 233
Q ss_pred HHHHcCCCEEEEeCCCCC-HHHHHHHHHHh
Q 030169 135 EAMEAELDLVVCITEGIP-QHDMVINFTRV 163 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~-~eD~~~l~~~a 163 (182)
+.++.|. .+++ ..++. +-|+..|.+.+
T Consensus 287 ~~mK~Ga-iliN-vG~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 287 EAMKDGA-ILAN-IGHFDNEIDVAALEELA 314 (425)
T ss_pred hcCCCCC-EEEE-cCCCCCccChHHHhhcC
Confidence 3334442 3333 33333 34566666654
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.062 Score=44.49 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeE--------------e----------------cCcc--c
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTE--------------H----------------LGLP--V 104 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~--------------i----------------~GvP--V 104 (182)
++||+|+|+ |..|..+++.+...|. +|. -+|....... + .++. +
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GVg~i~--lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGIDSIT--IVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 478999999 6699999999999993 344 4444322110 0 0111 1
Q ss_pred c--------ccHHHHHhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 105 F--------NSVAEAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 105 y--------~Sv~ea~~~~~~DvaVdfVpp-~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
+ ++.++..+ ++|++++...+ .....+-+.|.++++|.|.+-+.|+
T Consensus 96 ~~~~~~~~~~~~~~~~~--~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~ 149 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQ--KFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGL 149 (198)
T ss_pred EecccccchhhHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 1 12233344 67888877644 3445666777788888887766665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.071 Score=48.04 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=55.8
Q ss_pred chhhhHHHHHhCCceEEeeccCCCCC--------eEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHHHHHcC-
Q 030169 71 GTFHTEQAIEYGTKMVVGGVTPKKGG--------TEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEAMEAE- 140 (182)
Q Consensus 71 G~~v~k~~~~~g~~IV~AgVdp~~~G--------~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~eAie~G- 140 (182)
|..++..+.+.|.+|+ ++|+.... -...|+.+..+..++.+ ++|++++++|+.. +.++++...++-
T Consensus 32 G~~MA~~La~aG~~V~--v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~--~ADvVIlaVP~~~~v~~Vl~~L~~~L~ 107 (342)
T PRK12557 32 GSRMAIEFAEAGHDVV--LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK--HGEIHILFTPFGKKTVEIAKNILPHLP 107 (342)
T ss_pred HHHHHHHHHhCCCeEE--EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh--CCCEEEEECCCcHHHHHHHHHHHhhCC
Confidence 4455667777787777 66765421 01247778888888887 8999999999998 677776555431
Q ss_pred C-CEEEEeCCCCCHHHH-HHHHHH
Q 030169 141 L-DLVVCITEGIPQHDM-VINFTR 162 (182)
Q Consensus 141 I-k~VV~iTeG~~~eD~-~~l~~~ 162 (182)
- ..|+. +..++.... ..+.+.
T Consensus 108 ~g~IVId-~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 108 ENAVICN-TCTVSPVVLYYSLEGE 130 (342)
T ss_pred CCCEEEE-ecCCCHHHHHHHHHHH
Confidence 1 23444 445555555 455444
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.074 Score=46.35 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=59.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC----CCCeEe---------cCccccccHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK----KGGTEH---------LGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~----~~G~~i---------~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
.+||+|+|+ |.+|..+...+.+.|.++...+-++. ..|..+ ..++++.+.++ .. .+|+++++|
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~D~vilav 80 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-MP--PCDWVLVGL 80 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-cC--CCCEEEEEe
Confidence 478999999 99999999999888866551122220 011111 11334445443 23 689999999
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEeCCCCCHHHHH
Q 030169 125 PPPFAAAAIMEAMEAE--LDLVVCITEGIPQHDMV 157 (182)
Q Consensus 125 pp~av~~a~~eAie~G--Ik~VV~iTeG~~~eD~~ 157 (182)
+.....+++......- -..|+.+.-|+..++..
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l 115 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQL 115 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHH
Confidence 9988887666554331 12455667898755433
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.015 Score=51.07 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=65.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe-Ee---cCcc--ccccHHHHHhccCCcEEEEeeChHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT-EH---LGLP--VFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~-~i---~GvP--Vy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
+..+|+|+|+ |.||+.+++.+...| .+|+ .+++..... +. .|.. .++++.+++. ++|+++..++....
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~--v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVi~at~~~~~ 251 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEIT--IANRTYERAEELAKELGGNAVPLDELLELLN--EADVVISATGAPHY 251 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEE--EEeCCHHHHHHHHHHcCCeEEeHHHHHHHHh--cCCEEEECCCCCch
Confidence 4678999999 999999999998877 4454 445442110 11 1222 2344666666 78999999998777
Q ss_pred HHHHHHHHHcC---CCEEEEeC------------CCCCHHHHHHHHHHhc
Q 030169 130 AAAIMEAMEAE---LDLVVCIT------------EGIPQHDMVINFTRVN 164 (182)
Q Consensus 130 ~~a~~eAie~G---Ik~VV~iT------------eG~~~eD~~~l~~~ak 164 (182)
.+....+++.. -..++-++ +|+..-|++.|.++++
T Consensus 252 ~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 252 AKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVE 301 (311)
T ss_pred HHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHH
Confidence 66666665442 23444434 3566666777776664
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.051 Score=48.66 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=64.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-----------------------EecCccccccHHHHHhc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-----------------------EHLGLPVFNSVAEAKAE 114 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-----------------------~i~GvPVy~Sv~ea~~~ 114 (182)
-.+|.|+|+ |-||..++..+...|.+++ .+|+..... ....+-..++++++.+
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~--l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~- 82 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVV--AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA- 82 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc-
Confidence 467999999 9999999999999999888 555542100 0112345667888887
Q ss_pred cCCcEEEEeeChHHH-HHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030169 115 TKANASVIYVPPPFA-AAAIMEAMEAELD---LVVCITEGIPQHDMVI 158 (182)
Q Consensus 115 ~~~DvaVdfVpp~av-~~a~~eAie~GIk---~VV~iTeG~~~eD~~~ 158 (182)
++|.++-.+|.+.. +..+-.-++...+ .+..-|.+++..++..
T Consensus 83 -~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~ 129 (321)
T PRK07066 83 -DADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA 129 (321)
T ss_pred -CCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH
Confidence 89999999997764 4444444444333 2333357887766654
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.08 Score=47.04 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEe---------------------------c---Cccccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEH---------------------------L---GLPVFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i---------------------------~---GvPVy~ 106 (182)
+.||+|+|+ |-.|..+++.+...| .+|. -+|........ + .+-+|+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG~i~--lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIGKFT--IADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCCeEE--EEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 578999999 999999999999989 4444 55554332210 0 222232
Q ss_pred ------cHHHHHhccCCcEEEEeeCh---HHHHHHHHHHHHcCCCEEEE
Q 030169 107 ------SVAEAKAETKANASVIYVPP---PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp---~av~~a~~eAie~GIk~VV~ 146 (182)
+.+++++ ++|++||.+.. +.-+.+-+.|.++|+|.|.+
T Consensus 104 ~~l~~~n~~~ll~--~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 104 EGIGKENADAFLD--GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred cccCccCHHHHHh--CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 2445555 67888887764 45566677788888888765
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.018 Score=43.20 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=52.5
Q ss_pred eEEEEccCCCCchhhhHHHHH-hCCceEEeecc-CCCCCeEec----Ccc--ccccHH-HHHhccCCcEEEEeeChHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIE-YGTKMVVGGVT-PKKGGTEHL----GLP--VFNSVA-EAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVd-p~~~G~~i~----GvP--Vy~Sv~-ea~~~~~~DvaVdfVpp~av~ 130 (182)
|+.|+|++|.+|+.+.+.+.+ .+++++ +-+. +...|+... .+. ++..++ +-.+..++|++++.+|+....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~-av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVV-ALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEE-EEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHH
Confidence 589999999999999998887 478888 5433 322232221 121 122221 111123789999999999999
Q ss_pred HHHHHH---HHcCCCEE
Q 030169 131 AAIMEA---MEAELDLV 144 (182)
Q Consensus 131 ~a~~eA---ie~GIk~V 144 (182)
+.+... ++.|...|
T Consensus 80 ~~~~~~~~~~~~g~~vi 96 (122)
T smart00859 80 EIAPLLPKAAEAGVKVI 96 (122)
T ss_pred HHHHHHHhhhcCCCEEE
Confidence 975533 35565444
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.16 Score=42.32 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ +++..... ++++.+. +++ +..|...++.+.+++++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~--~~~r~~~~-----------l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVY--GAARRVDK-----------MEDLASL-GVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH-----------HHHHHhC-CCeEEEeeCCCHHHHHHHHHHH
Confidence 35799999999999999999999998888 44443211 1121111 222 346788888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 69 ~~~~~~id~li~-~ag~ 84 (273)
T PRK06182 69 IAEEGRIDVLVN-NAGY 84 (273)
T ss_pred HHhcCCCCEEEE-CCCc
Confidence 765 6888887 6565
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.047 Score=45.18 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=52.1
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCcccc--ccHHHHHhccCCcEEEEeeChH--------
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGLPVF--NSVAEAKAETKANASVIYVPPP-------- 127 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~GvPVy--~Sv~ea~~~~~~DvaVdfVpp~-------- 127 (182)
|+|.|++|-.|+.+++.+.+.|.+|+ + ++........ .++-.+ ....+.+. ++|+++.+....
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~ 76 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVT-I-LTRSPPAGANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTE 76 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEE-E-EeCCCCCCCcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCH
Confidence 57999999999999999999999998 4 4433221111 111111 22333344 789998777421
Q ss_pred ------------HHHHHHHHHHHcCCC-EEEEeC
Q 030169 128 ------------FAAAAIMEAMEAELD-LVVCIT 148 (182)
Q Consensus 128 ------------av~~a~~eAie~GIk-~VV~iT 148 (182)
.++.+++.|.++|++ .+++.+
T Consensus 77 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~ 110 (292)
T TIGR01777 77 ERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISA 110 (292)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEe
Confidence 156677778888884 444433
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.12 Score=42.13 Aligned_cols=86 Identities=21% Similarity=0.208 Sum_probs=56.0
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~ 134 (182)
-++.+++|.|++|..|+.+++.+.+.|.+|+ .++..... .+ .+.+...+.++ -+..|+..++...++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~--~~~r~~~~-----~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVH--VCDVSEAA-----LA---ATAARLPGAKVTATVADVADPAQVERVFD 78 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE--EEeCCHHH-----HH---HHHHHHhcCceEEEEccCCCHHHHHHHHH
Confidence 3568899999999999999999999998877 55543211 10 11111111111 24567788888888877
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030169 135 EAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~ 152 (182)
+..+. ++..|+. ..|..
T Consensus 79 ~~~~~~~~~d~vi~-~ag~~ 97 (264)
T PRK12829 79 TAVERFGGLDVLVN-NAGIA 97 (264)
T ss_pred HHHHHhCCCCEEEE-CCCCC
Confidence 77654 7888887 54443
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.035 Score=42.52 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=49.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEecC-ccccc----------cHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEHLG-LPVFN----------SVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i~G-vPVy~----------Sv~ea~~~~~~DvaVdfVp 125 (182)
+.||+|+|+ |..|..+++.+...|. ++. -+|+.....+..+ -+.|. .+++.+.+..|++-+...+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~--lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKIT--LVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEE--EEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCcee--ecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 578999999 9999999999999893 455 5555543321111 11111 1333344445555565555
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG 150 (182)
.....+..++.+ .+...||+.+..
T Consensus 79 ~~~~~~~~~~~~-~~~d~vi~~~d~ 102 (135)
T PF00899_consen 79 EKIDEENIEELL-KDYDIVIDCVDS 102 (135)
T ss_dssp SHCSHHHHHHHH-HTSSEEEEESSS
T ss_pred cccccccccccc-cCCCEEEEecCC
Confidence 555444445544 355566553333
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.088 Score=43.25 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=54.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e----------------------cCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H----------------------LGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i----------------------~GvPVy~Sv~ea~~~~ 115 (182)
|||.|+|. |..|-..+-.+.+.|.+++ |+|.+..--+ + ..+-...+.+++++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~--g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGHQVI--GVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEE--EE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred CEEEEECC-CcchHHHHHHHHhCCCEEE--EEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 68999998 9999999999999999999 6665541100 0 13345556777666
Q ss_pred CCcEEEEeeCh----------HHHHHHHHHHHHcCC-CEEEEeCCCCCHHHHH
Q 030169 116 KANASVIYVPP----------PFAAAAIMEAMEAEL-DLVVCITEGIPQHDMV 157 (182)
Q Consensus 116 ~~DvaVdfVpp----------~av~~a~~eAie~GI-k~VV~iTeG~~~eD~~ 157 (182)
++|+.++.||- +.+..+++...++-- ..+|++-+=+|+.-.+
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 68999999983 345666666655422 3444445445544444
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.032 Score=50.44 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=62.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHh----CCceEEeecc--------------CC---------CCCeE--ec--Cccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY----GTKMVVGGVT--------------PK---------KGGTE--HL--GLPVFN- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~----g~~IV~AgVd--------------p~---------~~G~~--i~--GvPVy~- 106 (182)
.||.|.|| |+.|+.+.+.+.+. +++++ |--| .. ..|+. ++ .+.|+.
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vv-aind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVV-AINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 58999999 99999999988874 37777 4322 11 11111 12 366663
Q ss_pred -cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 -Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++.+ .+.++|+++..+......+.+..++++|.+.|++
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i 121 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF 121 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe
Confidence 456554 3358999999999999999999999999999887
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.084 Score=44.20 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=57.7
Q ss_pred EEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC-----------hH---
Q 030169 62 ICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP-----------PP--- 127 (182)
Q Consensus 62 iVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp-----------p~--- 127 (182)
+|.|++|-.|+.+++.+.+.|.+++ ....... + ++--..+++++++..++|++|-+.. +.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~-~~~~~~~-~----Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~ 74 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNL-VLRTHKE-L----DLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFI 74 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEE-Eeecccc-C----CCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHH
Confidence 4789999999999999999887777 4443322 2 3444566778777777899988751 11
Q ss_pred -----HHHHHHHHHHHcCCCEEEEeCC
Q 030169 128 -----FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 128 -----av~~a~~eAie~GIk~VV~iTe 149 (182)
....+++.|.+++++.+|.+++
T Consensus 75 ~~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 75 RENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 2455788888889876555443
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.12 Score=45.56 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=69.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec-Ccccccc----H-HHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL-GLPVFNS----V-AEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~-GvPVy~S----v-~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.++|+|+|. |.||+-+++.+.+.|..+.+-|.|......+.. .+=+-++ . .+... ++|++|+.||..+..+
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~ 79 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE 79 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence 467999996 999999999999999555214888876321111 1112222 2 33333 6899999999999999
Q ss_pred HHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 132 AIMEAME-AELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 132 a~~eAie-~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
++++... .....+|.=++.+...-++.+.+..
T Consensus 80 ~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 80 VLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred HHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 9999885 3444455545666666666666655
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.15 Score=44.42 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e--------------cCccccccHHHHHhccCCcEEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H--------------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i--------------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ +++....... . .++-=..++.++.++.++|+++.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVY--GYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEE--EEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 47899999999999999999999998988 4443221110 0 01111123455566556898887
Q ss_pred eeCh------------------HHHHHHHHHHHHcC-CCEEEEeCC
Q 030169 123 YVPP------------------PFAAAAIMEAMEAE-LDLVVCITE 149 (182)
Q Consensus 123 fVpp------------------~av~~a~~eAie~G-Ik~VV~iTe 149 (182)
+... .....+++.|.+.+ ++.+|.+++
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 6631 12345556666666 666666564
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.0062 Score=49.10 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=64.2
Q ss_pred ceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCeE--------------------------ecC--cccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGTE--------------------------HLG--LPVFNS-- 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~~--------------------------i~G--vPVy~S-- 107 (182)
.||.|-|+ |+.|+.+.+.+. ..+++|+ |--|+...-+. ++| ++++..
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~~~~evv-aInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQPDIEVV-AINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTSTTEEEE-EEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSS
T ss_pred CEEEEECC-CcccHHHHHhhcccceEEEE-EEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhh
Confidence 48999999 999999999888 4569999 76666522111 123 333332
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++++ .+.++|++++.++.....+.++.-+++|.|.|+.
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVii 118 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVII 118 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEE
T ss_pred hcccccccccccEEEeccccceecccccccccccccceee
Confidence 44443 3458999999999999999999999999999998
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O .... |
| >COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.018 Score=51.94 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=75.2
Q ss_pred ceEEEEccCCCCchhhhHHHHH--hCCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHH---
Q 030169 59 TRVICQGITGKNGTFHTEQAIE--YGTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFA--- 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~--~g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av--- 129 (182)
.+|+|+| -+.|+.....++. .+++++ |-..-+-.-+ .-.|+|.|..++|+++ ++|++.+.|-...+
T Consensus 5 ksVvV~G--trFGq~Ylaaf~~~~~~~eLa-GiLaqGSeRSRaLAh~~GVply~~~eelpd--~idiACVvVrsai~Gg~ 79 (361)
T COG4693 5 KSVVVCG--TRFGQFYLAAFAAAPPRFELA-GILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQ 79 (361)
T ss_pred ceEEEec--chHHHHHHHHhccCCCCceee-hhhhcccHHHHHHHHHhCCccccCHhhCCC--CCCeEEEEEeeeeecCC
Confidence 3899999 6899999887774 468888 4333322111 0249999999999999 89999998876654
Q ss_pred -HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 130 -AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 130 -~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.++++..++.||+++.= -=+-.+|+.++.++|++
T Consensus 80 Gs~larall~RGi~VlqE--HPl~p~di~~l~rlA~r 114 (361)
T COG4693 80 GSALARALLARGIHVLQE--HPLHPRDIQDLLRLAER 114 (361)
T ss_pred cHHHHHHHHHcccHHHHh--CCCCHHHHHHHHHHHHH
Confidence 57888889999997642 33557899999999865
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.064 Score=48.71 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=63.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeE-e--c--CccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTE-H--L--GLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~-i--~--GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.||.|+|+||--|+...+.|.+.+ ++.+.-.-.+...|++ . . .+++-+++.+..+-.++|+++-.-+.+...+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~ 81 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE 81 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence 589999999999999999999855 4433133444444544 1 1 3566666555444337999999999999999
Q ss_pred HHHHHHHcCCCEE
Q 030169 132 AIMEAMEAELDLV 144 (182)
Q Consensus 132 a~~eAie~GIk~V 144 (182)
...++.++|.-+|
T Consensus 82 ~~p~~~~~G~~VI 94 (334)
T COG0136 82 VEPKAAEAGCVVI 94 (334)
T ss_pred HHHHHHHcCCEEE
Confidence 9999999996655
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.11 Score=43.20 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=41.9
Q ss_pred eEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCC--CCe-E---e----------cCccccccHHHHHhccCCcEEE
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKK--GGT-E---H----------LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~--~G~-~---i----------~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
+|+|.|++|..|+.+++.+++.| .+|+ +++... ... . . .++--.+++.++++...+|+++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 78 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVI--VLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVV 78 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEE--EecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEE
Confidence 58999999999999999998776 6777 444210 000 0 0 1222223466677755699999
Q ss_pred EeeC
Q 030169 122 IYVP 125 (182)
Q Consensus 122 dfVp 125 (182)
.+..
T Consensus 79 ~~a~ 82 (317)
T TIGR01181 79 HFAA 82 (317)
T ss_pred Eccc
Confidence 8874
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.12 Score=41.40 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=52.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+++ ..+...... ...+.+..+.. ++ -+..|+..++.+.++++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 76 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGADVV-VHYRSDEEA--------AEELVEAVEALGRRAQAVQADVTDKAALEAAVA 76 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCCCHHH--------HHHHHHHHHhcCCceEEEECCcCCHHHHHHHHH
Confidence 45899999999999999999999998877 433332211 11111111111 12 13456677787777776
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
+..+. ++..|+. ..|
T Consensus 77 ~~~~~~~~id~vi~-~ag 93 (249)
T PRK12825 77 AAVERFGRIDILVN-NAG 93 (249)
T ss_pred HHHHHcCCCCEEEE-CCc
Confidence 66554 6777776 555
|
|
| >PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.08 Score=49.89 Aligned_cols=107 Identities=20% Similarity=0.130 Sum_probs=66.6
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE--------------ec-----------------C
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE--------------HL-----------------G 101 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~--------------i~-----------------G 101 (182)
.+...||+|.|+||.-|+...+.+.++ .++++ |- .-+..-+. +. +
T Consensus 54 ~~~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vv-aL-aag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~ 131 (454)
T PLN02696 54 WDGPKPISLLGSTGSIGTQTLDIVAENPDKFKVV-AL-AAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDK 131 (454)
T ss_pred cCCccEEEEecCCcHhhHHHHHHHHhCccccEEE-EE-ECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCC
Confidence 344468999999999999999988864 38888 42 22211100 00 1
Q ss_pred ccccc---cHHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhcchhhhhhh
Q 030169 102 LPVFN---SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLNFIMKLT 178 (182)
Q Consensus 102 vPVy~---Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~~~~~~~~~ 178 (182)
..|+. .+.++.+..++|++|..+.-.+...-..+|+++|.++..+ =|+..|..|.+||++.
T Consensus 132 ~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALA----------------NKESLV~aG~lI~~~a 195 (454)
T PLN02696 132 PEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALA----------------NKETLIAGGPFVLPLA 195 (454)
T ss_pred cEEEECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEe----------------cHHHHHhhHHHHHHHH
Confidence 22443 2445444446777777777777777777778888665543 2555666666776654
Q ss_pred c
Q 030169 179 R 179 (182)
Q Consensus 179 ~ 179 (182)
+
T Consensus 196 k 196 (454)
T PLN02696 196 K 196 (454)
T ss_pred H
Confidence 3
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=44.80 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeecc-CCCC-----------CeEe----cCccccccHHHHHhccCCcEE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT-PKKG-----------GTEH----LGLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd-p~~~-----------G~~i----~GvPVy~Sv~ea~~~~~~Dva 120 (182)
+.++|+|.|++|-.|+.+++.+.+.|.+|+ +-+. +... +..+ .++--..+++++++ ++|++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~V 85 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVK-GTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID--GCDGV 85 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEE-EEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh--cCCEE
Confidence 456799999999999999999999998888 4321 1110 0000 12222233556666 68988
Q ss_pred EEeeCh-------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 121 VIYVPP-------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 121 VdfVpp-------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
+-+..+ ..+..+++.|.++|++.+|.+++
T Consensus 86 ih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 86 FHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 877643 12455677788889987766453
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.032 Score=48.59 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------------ecC-------------ccccccHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------------HLG-------------LPVFNSVAEA 111 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------------i~G-------------vPVy~Sv~ea 111 (182)
++|.|+|+ |.||..++..+.+.|.+|+ .+|+...--+ ..| +-+..+++++
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~~V~--v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGHEVR--LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCCeeE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence 57999996 9999999999999998888 6666531000 011 3466778888
Q ss_pred HhccCCcEEEEeeChHH-HHHHHHHHH
Q 030169 112 KAETKANASVIYVPPPF-AAAAIMEAM 137 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~a-v~~a~~eAi 137 (182)
.+ ++|+++..+|... +...+...+
T Consensus 80 ~~--~ad~Vi~avpe~~~~k~~~~~~l 104 (308)
T PRK06129 80 VA--DADYVQESAPENLELKRALFAEL 104 (308)
T ss_pred hC--CCCEEEECCcCCHHHHHHHHHHH
Confidence 77 7999999999763 344333333
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=46.64 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
..+|+|+|+ |..|..+++.+...|. +|. -||+..
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg~i~--lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIGKLT--IADRDY 58 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEcCCc
Confidence 467999999 9999999999999994 455 677754
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.039 Score=50.91 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=58.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeec-cCCC--CCeE----------ec---------------Ccccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGV-TPKK--GGTE----------HL---------------GLPVFNS- 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgV-dp~~--~G~~----------i~---------------GvPVy~S- 107 (182)
.||+|.|.||.-|+.+.+.+.++ .++|+ |.. +.+. .-+. +. ++.|+.-
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~Vv-aLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVV-ALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEE-EEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 57999999999999999887754 48888 543 1111 0000 00 1224333
Q ss_pred --HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 --VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 --v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+.++.+..++|+++..++-.+....+.+|+++|.+++.+
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA 121 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA 121 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence 444444446899999999888888899999999887663
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.058 Score=53.17 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=56.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccc-c-----cHHHHHhccCCcEEEEeeChH-----
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVF-N-----SVAEAKAETKANASVIYVPPP----- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy-~-----Sv~ea~~~~~~DvaVdfVpp~----- 127 (182)
|||+|.|++|..|+.+++.+.+.|.+|+ + ++.........++.++ . .+.+++. ++|+++-+.+..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi-~-ldr~~~~~~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~ 76 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVS-G-IAQHPHDALDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPG 76 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-E-EeCChhhcccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchh
Confidence 4799999999999999999999998888 4 4332111001112111 1 2444444 789999988632
Q ss_pred -----HHHHHHHHHHHcCCCEEEEeCCC
Q 030169 128 -----FAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 128 -----av~~a~~eAie~GIk~VV~iTeG 150 (182)
.+..+++.|.++|++.|+. ++.
T Consensus 77 ~vNv~Gt~nLleAA~~~GvRiV~~-SS~ 103 (699)
T PRK12320 77 GVGITGLAHVANAAARAGARLLFV-SQA 103 (699)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEE-ECC
Confidence 2456677788889975554 543
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.16 Score=41.66 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=54.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
++|+|.|++|..|..+++.+.+.|.+++ +++..... + +.+.+... .+++ +..|...++.+.+++++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~--~~~r~~~~-----~---~~~~~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVI--ATGRRQER-----L---QELKDELG-DNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE--EEECCHHH-----H---HHHHHHhc-cceEEEEecCCCHHHHHHHHHHHH
Confidence 4799999999999999999999998888 55543211 0 11111111 1222 3457788888888887776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|. ..|+
T Consensus 70 ~~~~~id~vi~-~ag~ 84 (248)
T PRK10538 70 AEWRNIDVLVN-NAGL 84 (248)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 64 6888887 5554
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.079 Score=49.68 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe--cCcccc----------ccHHHHH------------
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH--LGLPVF----------NSVAEAK------------ 112 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i--~GvPVy----------~Sv~ea~------------ 112 (182)
+..||+|||+ |+-|+.+++.+.+.|.+|| |-.|.. |.-. .|+.+- .++.+..
T Consensus 231 ~g~rVaIqGf-GnVG~~~A~~L~~~GakVV-avsDs~--G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 231 EGKRVVVSGS-GNVAIYAIEKAQQLGAKVV-TCSDSS--GYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEEcCC--ceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 3578999999 9999999999999999999 543421 1111 122222 1222221
Q ss_pred -hccCCcEEEEeeChHHHH-HHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 113 -AETKANASVIYVPPPFAA-AAIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 113 -~~~~~DvaVdfVpp~av~-~a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
-..++|+.+-........ +.+...++.+.+.|+.-+-|-...+..++.
T Consensus 307 i~~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L 356 (445)
T PRK09414 307 PWSVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF 356 (445)
T ss_pred ccccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH
Confidence 123678877666554443 444444556899999844333333344433
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.29 Score=39.05 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++.+.... . +...+... ... -+..|....+...++++++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~--~~~r~~~~~-~------~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 76 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVA--LIGRGAAPL-S------QTLPGVPA-DALRIGGIDLVDPQAARRAVDEV 76 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEE--EEeCChHhH-H------HHHHHHhh-cCceEEEeecCCHHHHHHHHHHH
Confidence 45699999999999999999998898877 665543110 0 01111111 111 1336777788888888777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..|+. ..|.
T Consensus 77 ~~~~~~~d~vi~-~ag~ 92 (239)
T PRK12828 77 NRQFGRLDALVN-IAGA 92 (239)
T ss_pred HHHhCCcCEEEE-CCcc
Confidence 665 6777777 5443
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.073 Score=48.78 Aligned_cols=82 Identities=12% Similarity=-0.033 Sum_probs=55.7
Q ss_pred ceEEEEccCCCCchhhhHHHH-HhCCc---eEEeeccCCCCCeEe--c--CccccccHHH-HHhccCCcEEEEeeChHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAI-EYGTK---MVVGGVTPKKGGTEH--L--GLPVFNSVAE-AKAETKANASVIYVPPPFA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~~g~~---IV~AgVdp~~~G~~i--~--GvPVy~Sv~e-a~~~~~~DvaVdfVpp~av 129 (182)
++|+|+|+||--|+.+.+.+. +.++. ++ ..-+...+|+.. . .+.|.+.-.+ ..+ ++|+++-..+.+.+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~-~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~--~vDivffa~g~~~s 77 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPV-FFSTSQLGQAAPSFGGTTGTLQDAFDIDALK--ALDIIITCQGGDYT 77 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEE-EEEchhhCCCcCCCCCCcceEEcCccccccc--CCCEEEEcCCHHHH
Confidence 379999999999999999888 66644 44 222323333221 1 1233322121 233 78999999999999
Q ss_pred HHHHHHHHHcCCCE
Q 030169 130 AAAIMEAMEAELDL 143 (182)
Q Consensus 130 ~~a~~eAie~GIk~ 143 (182)
.+....+.++|.+.
T Consensus 78 ~~~~p~~~~aG~~~ 91 (366)
T TIGR01745 78 NEIYPKLRESGWQG 91 (366)
T ss_pred HHHHHHHHhCCCCe
Confidence 99999999999763
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.32 Score=39.03 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.++++|.|++|..|+.+++.+.+.|.+++ .++..... ..| . + =+..|...++.+.+++++..
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~--~~~r~~~~----~~~---------~--~-~~~~D~~~~~~~~~~~~~~~ 64 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVI--GIARSAID----DFP---------G--E-LFACDLADIEQTAATLAQIN 64 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEE--EEeCCccc----ccC---------c--e-EEEeeCCCHHHHHHHHHHHH
Confidence 35799999999999999999999998888 55544321 111 0 1 13467788888888888877
Q ss_pred Hc-CCCEEEEeCCCC
Q 030169 138 EA-ELDLVVCITEGI 151 (182)
Q Consensus 138 e~-GIk~VV~iTeG~ 151 (182)
+. ++..++. ..|.
T Consensus 65 ~~~~~d~vi~-~ag~ 78 (234)
T PRK07577 65 EIHPVDAIVN-NVGI 78 (234)
T ss_pred HhCCCcEEEE-CCCC
Confidence 65 5766776 5554
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.083 Score=47.70 Aligned_cols=106 Identities=19% Similarity=0.134 Sum_probs=74.7
Q ss_pred ceEEEEccCCCCchhhhHHHH-HhCCceEEeecc--CCCCCeEec--------CccccccHHHHHhccCCc-EEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVT--PKKGGTEHL--------GLPVFNSVAEAKAETKAN-ASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVd--p~~~G~~i~--------GvPVy~Sv~ea~~~~~~D-vaVdfVpp 126 (182)
++|++.|. |..|....+.+. +.++++| |.++ +.+.|++.. |+-+-++++.... +.+| ++.+-.-|
T Consensus 3 ~~vvqyGt-G~vGv~air~l~akpe~elv-gawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlA-tl~~~~~y~~~~~ 79 (350)
T COG3804 3 LRVVQYGT-GSVGVAAIRGLLAKPELELV-GAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLA-TLADAVIYAPLLP 79 (350)
T ss_pred ceeEEecc-chHHHHHHHHHHcCCCCceE-EEEecCcccccccHHHhcCCCCceeEeeccccccee-ccccceeeecccc
Confidence 57888897 999998888777 5589999 7644 446676542 5555555555444 3343 33333334
Q ss_pred HHHHHHHHHHHHcCCCEEEE-----eCCCCCHHHHHHHHHHhcccchh
Q 030169 127 PFAAAAIMEAMEAELDLVVC-----ITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~-----iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
+ .+..++++.+||.+|-- +--+.+.+.++++.++|++.-.+
T Consensus 80 ~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~ 125 (350)
T COG3804 80 S--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNA 125 (350)
T ss_pred h--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCc
Confidence 3 67778999999987643 44678999999999999887764
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.049 Score=49.36 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=54.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccc-----cccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV-----FNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPV-----y~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
.+|.|+|+ |.+|..+++.+.+.|.+|+ |.|..... ....+. ..+.+...+ ++|+.|...+.....+.+
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~~~G~~V~--g~D~~~~~--~~~~~~~~~~~~~~~~~~~~--~~dlvV~s~gi~~~~~~l 76 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLAQKGVYVI--GVDKSLEA--LQSCPYIHERYLENAEEFPE--QVDLVVRSPGIKKEHPWV 76 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHHHCCCEEE--EEeCCccc--cchhHHHhhhhcCCcHHHhc--CCCEEEECCCCCCCcHHH
Confidence 57999999 9999999999999998877 78876532 111111 122333333 678888877666667888
Q ss_pred HHHHHcCCC
Q 030169 134 MEAMEAELD 142 (182)
Q Consensus 134 ~eAie~GIk 142 (182)
.+|+++|++
T Consensus 77 ~~A~~~g~~ 85 (418)
T PRK00683 77 QAAIASHIP 85 (418)
T ss_pred HHHHHCCCc
Confidence 999999987
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.077 Score=46.80 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
...|+|.|++|..|+.+++.+.+.|.+|+ .++.+... . ..+.+-+++...++ ..|...++.+.++++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vv--l~~R~~~~--l------~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLV--LAARDEEA--L------QAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 35699999999999999999999999988 44443211 1 11111122222333 468888999999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 77 ~~~~~~g~iD~lVn-nAG~ 94 (330)
T PRK06139 77 QAASFGGRIDVWVN-NVGV 94 (330)
T ss_pred HHHHhcCCCCEEEE-CCCc
Confidence 88775 5788887 6664
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.14 Score=41.25 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=51.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... .+++.. .+++ ...|+..++.+..++++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~--~~~r~~~~-----------~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 67 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVI--ATARDAAA-----------LAALQA-LGAEALALDVADPASVAGLAWKLD 67 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEE--EEECCHHH-----------HHHHHh-ccceEEEecCCCHHHHHHHHHHhc
Confidence 3689999999999999999999998888 45443211 122111 1121 4566777777776655543
Q ss_pred HcCCCEEEEeCCCCC
Q 030169 138 EAELDLVVCITEGIP 152 (182)
Q Consensus 138 e~GIk~VV~iTeG~~ 152 (182)
..++..++. +.|..
T Consensus 68 ~~~~d~vi~-~ag~~ 81 (222)
T PRK06953 68 GEALDAAVY-VAGVY 81 (222)
T ss_pred CCCCCEEEE-CCCcc
Confidence 335788877 66653
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.17 Score=42.94 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=55.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCCCe------------Ee----cCccccccHHHHHhccCCcE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKGGT------------EH----LGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~G~------------~i----~GvPVy~Sv~ea~~~~~~Dv 119 (182)
+.++|+|.|++|-.|+.+++.+.+.|.+|+ +-+ ++..... .+ .++--...++++++ ++|+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 79 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVK-ATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD--GCEG 79 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEE-EEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc--CCCE
Confidence 457899999999999999999999998887 432 3221100 00 12222233556666 6898
Q ss_pred EEEeeCh--------H-H--------HHHHHHHHHHc-CCCEEEEeCC
Q 030169 120 SVIYVPP--------P-F--------AAAAIMEAMEA-ELDLVVCITE 149 (182)
Q Consensus 120 aVdfVpp--------~-a--------v~~a~~eAie~-GIk~VV~iTe 149 (182)
++-+..+ . . ...+++.|.+. +++.+|.+++
T Consensus 80 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS 127 (322)
T PLN02662 80 VFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSS 127 (322)
T ss_pred EEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 8776532 1 1 12345556666 8877765453
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.2 Score=40.64 Aligned_cols=84 Identities=19% Similarity=0.138 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~e 135 (182)
+.++|.|++|..|+.+++.+.+.|.+++ ...+..... ... .++++ ++...++ ..|....+.+.+++++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv-~~~~~~~~~----~~~---~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVV-AGCGPNSPR----RVK---WLEDQ-KALGFDFIASEGNVGDWDSTKAAFDK 74 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEE-EEcCCChHH----HHH---HHHHH-HhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 4589999999999999999999998888 544332211 000 12222 1112333 3677888888888888
Q ss_pred HHHc--CCCEEEEeCCCCC
Q 030169 136 AMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~~ 152 (182)
+.+. ++..+|. ..|+.
T Consensus 75 ~~~~~~~id~li~-~ag~~ 92 (246)
T PRK12938 75 VKAEVGEIDVLVN-NAGIT 92 (246)
T ss_pred HHHHhCCCCEEEE-CCCCC
Confidence 7765 6888887 66763
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.27 Score=40.64 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=52.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... ... .. ++ -+-.|...++...++++.+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~--~~~r~~~~--~~~----------~~--~~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVF--GTSRNPAR--AAP----------IP--GVELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEE--EEeCChhh--ccc----------cC--CCeeEEeecCCHHHHHHHHHHH
Confidence 45699999999999999999999999888 33433211 110 01 11 2345777888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 68 ~~~~g~~d~li~-~ag~ 83 (270)
T PRK06179 68 IARAGRIDVLVN-NAGV 83 (270)
T ss_pred HHhCCCCCEEEE-CCCC
Confidence 664 4677776 7775
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.11 Score=52.30 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=59.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec-------CccccccHHHHHhccCCcEEEEeeCh-----
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL-------GLPVFNSVAEAKAETKANASVIYVPP----- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~-------GvPVy~Sv~ea~~~~~~DvaVdfVpp----- 126 (182)
|||+|.|++|..|+.+++.+.+.|.+|+ + ++......... ++-=..+++++++ ++|+++.+...
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv-~-l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~--~vD~VVHlAa~~~~~~ 76 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVV-G-IARHRPDSWPSSADFIAADIRDATAVESAMT--GADVVAHCAWVRGRND 76 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEE-E-EECCchhhcccCceEEEeeCCCHHHHHHHHh--CCCEEEECCCcccchH
Confidence 4799999999999999999999998888 4 44321110001 2222234555565 78999988643
Q ss_pred ----HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 127 ----PFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 127 ----~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
.....+++.|.++|++.+|.+++.-
T Consensus 77 ~vNv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 77 HINIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 2345667777788998877766653
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.15 Score=42.84 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcc--ccccHHHHHhccCCc---EEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLP--VFNSVAEAKAETKAN---ASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvP--Vy~Sv~ea~~~~~~D---vaVdfVpp~av~~a 132 (182)
+++++|.|++|-.|+.+++.+.+.|.+++ .++..... ...++ +.+..++ .++...+ ...|...++.+.++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~~~~~~~l~~~~~~-~~~~~~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIV--IAAKTAEP--HPKLPGTIHTAAEE-IEAAGGQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeccccc--ccchhhHHHHHHHH-HHhcCCceEEEEecCCCHHHHHHH
Confidence 35799999999999999999999999888 44443321 11111 1111122 2211122 34678888888888
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
+++..+. ++..+|+ ..|+
T Consensus 81 ~~~~~~~~g~id~li~-~ag~ 100 (273)
T PRK08278 81 VAKAVERFGGIDICVN-NASA 100 (273)
T ss_pred HHHHHHHhCCCCEEEE-CCCC
Confidence 8887765 6788887 6665
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.06 Score=45.47 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=58.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--e---EecCcccc---ccHHHHHhc---cCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--T---EHLGLPVF---NSVAEAKAE---TKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~---~i~GvPVy---~Sv~ea~~~---~~~DvaVdfVpp~ 127 (182)
++++|+|+ |+.|..+++.+.+.|.+++ .++....- + +..+.-++ .+-.+++++ .++|+.+..+..+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv--~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVV--LIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceE--EEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 57999999 9999999999999998888 54443311 1 01223333 233333332 2789999999995
Q ss_pred HHH-HHHHHHHH-cCCCEEEEeC
Q 030169 128 FAA-AAIMEAME-AELDLVVCIT 148 (182)
Q Consensus 128 av~-~a~~eAie-~GIk~VV~iT 148 (182)
.+. -++..|.+ .|+|.+|+-+
T Consensus 78 ~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEe
Confidence 555 45555555 5999998844
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.19 Score=40.95 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=53.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE-EEEeeChHHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA-SVIYVPPPFAAAAIME 135 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv-aVdfVpp~av~~a~~e 135 (182)
+.++|+|.|++|..|+.+++.+.+.|.+++ .++..... .. .+..++.+.......+. ..|...++.+.+++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~--~~~r~~~~--~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVI--AADIDKEA--LN--ELLESLGKEFKSKKLSLVELDITDQESLEEFLSK 76 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEE--EEecChHH--HH--HHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHH
Confidence 356799999999999999999999998888 44443211 10 01111111001112333 5688888888888887
Q ss_pred HHHc--CCCEEEEeC
Q 030169 136 AMEA--ELDLVVCIT 148 (182)
Q Consensus 136 Aie~--GIk~VV~iT 148 (182)
+.+. ++..+|..+
T Consensus 77 ~~~~~~~id~vi~~A 91 (256)
T PRK09186 77 SAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHcCCccEEEECC
Confidence 7653 467777633
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.18 Score=40.76 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+.+++|.|++|..|..+++.+.+.|.+++ +++..... .. ...+.+.+ ..++ -...|...++.+.++++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~--~~~r~~~~--~~--~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVV--VTDRNEEA--AE--RVAAEILA---GGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH--HHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHH
Confidence 45799999999999999999999998877 55544311 10 01111111 0111 2345677888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..||. ..|.
T Consensus 76 ~~~~~~~d~vi~-~ag~ 91 (251)
T PRK07231 76 LERFGSVDILVN-NAGT 91 (251)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 654 4666776 6665
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.051 Score=47.60 Aligned_cols=85 Identities=14% Similarity=0.288 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccc--cccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPV--y~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
..+|+|+|+ |++|+.+++.+...|.+|. .+++...... ..|... +.+++++.+ ++|+++..+|......-
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~--v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P~~ii~~~ 225 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGARVF--VGARSSADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIPALVLTAD 225 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCChHHhCHH
Confidence 468999999 9999999999999999888 4454431100 012222 345666666 79999999987654432
Q ss_pred HHHHHHcCCCEEEEeC
Q 030169 133 IMEAMEAELDLVVCIT 148 (182)
Q Consensus 133 ~~eAie~GIk~VV~iT 148 (182)
....++.+ ..++.++
T Consensus 226 ~l~~~k~~-aliIDla 240 (287)
T TIGR02853 226 VLSKLPKH-AVIIDLA 240 (287)
T ss_pred HHhcCCCC-eEEEEeC
Confidence 22333332 3455444
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.2 Score=42.11 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... ++++.+. .++ +..|...++.+.++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi--~~~r~~~~-----------~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVF--ATCRKEED-----------VAALEAE-GLEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH-----------HHHHHHC-CceEEEccCCCHHHHHHHHHHH
Confidence 35699999999999999999999999988 44443211 1222221 233 346788888888888888
Q ss_pred HHc---CCCEEEEeCCCC
Q 030169 137 MEA---ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~---GIk~VV~iTeG~ 151 (182)
.+. .+..+|+ ..|+
T Consensus 70 ~~~~~g~id~li~-~Ag~ 86 (277)
T PRK05993 70 LELSGGRLDALFN-NGAY 86 (277)
T ss_pred HHHcCCCccEEEE-CCCc
Confidence 663 5777877 5443
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.19 Score=42.89 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEec----------------------------C--ccccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHL----------------------------G--LPVFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~----------------------------G--vPVy~ 106 (182)
..||+|+|+ |-.|..+++.+...| .+|+ -+|+........ + +-.++
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~--lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGVGNLT--LLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEE--EEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 478999999 999999999999999 5555 555554332100 1 11121
Q ss_pred ------cHHHHHhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCC
Q 030169 107 ------SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITE 149 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp~av~~-a~~eAie~GIk~VV~iTe 149 (182)
+++++.+ ++|++|+.+-...+.. +-+.|.++++|.|.+-+.
T Consensus 101 ~~i~~~~~~~~~~--~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~ 148 (240)
T TIGR02355 101 AKLDDAELAALIA--EHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAI 148 (240)
T ss_pred ccCCHHHHHHHhh--cCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 1333444 6788888876655554 446677888888866333
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.012 Score=47.96 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=57.9
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---------------------------ecCccccccHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---------------------------HLGLPVFNSVAEAK 112 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---------------------------i~GvPVy~Sv~ea~ 112 (182)
||.|+|+ |.||+.++..+...|.+++ -+|+....-+ ...+.+..+++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~--l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVT--LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEE--EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEE--EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence 6899999 9999999999999998888 5555432110 11455667777755
Q ss_pred hccCCcEEEEeeChHHHH-HHHHHHHHc----CCCEEEEeCCCCCHHHHHHH
Q 030169 113 AETKANASVIYVPPPFAA-AAIMEAMEA----ELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~av~-~a~~eAie~----GIk~VV~iTeG~~~eD~~~l 159 (182)
++|.++..+|.+.-. .-+..-++. ..-..-+ |.+++..++..-
T Consensus 78 ---~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn-TSsl~i~~la~~ 125 (180)
T PF02737_consen 78 ---DADLVIEAIPEDLELKQELFAELDEICPPDTILASN-TSSLSISELAAA 125 (180)
T ss_dssp ---TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE---SSS-HHHHHTT
T ss_pred ---hhheehhhccccHHHHHHHHHHHHHHhCCCceEEec-CCCCCHHHHHhc
Confidence 489999999987633 333344444 3333444 789998887544
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.18 Score=43.56 Aligned_cols=79 Identities=15% Similarity=0.001 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC------------
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP------------ 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp------------ 125 (182)
.+||+|.|++|-.|+.+++.+.+.|.+++ .. ... .. -...++..++..++|+++-+.-
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~-~~-~~~-----~~---~~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~ 78 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFH-YG-SGR-----LE---NRASLEADIDAVKPTHVFNAAGVTGRPNVDWCES 78 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEE-Ee-cCc-----cC---CHHHHHHHHHhcCCCEEEECCcccCCCCchhhhh
Confidence 47899999999999999999999998887 32 111 11 1123444455457888773321
Q ss_pred ---------hHHHHHHHHHHHHcCCCEEEE
Q 030169 126 ---------PPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 ---------p~av~~a~~eAie~GIk~VV~ 146 (182)
-.....+++.|.++|++.++.
T Consensus 79 ~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 79 HKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 112445777788889997765
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.16 Score=42.93 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=27.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
+.+|+|+|+ |-.|..+++.+...| .+|. -+|+..
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~--lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGVGRIL--LIDEQT 61 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEcCCc
Confidence 467999999 999999999999999 4555 556544
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.14 Score=42.32 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=28.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
+.||+|+|+ |.+|..+++.+...|. +|. .+|+..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~~i~--lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVGTIV--IVDDDH 55 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEE--EecCCE
Confidence 477999999 9999999999999994 666 667663
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.26 Score=40.39 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=51.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ .++..... .. .. +++ +-.|...++.+.++++++
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~--~~~r~~~~-~~------------~~--~~~~~~~D~~~~~~~~~~~~~~ 71 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVV--TTARSRPD-DL------------PE--GVEFVAADLTTAEGCAAVARAV 71 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEE--EEeCChhh-hc------------CC--ceeEEecCCCCHHHHHHHHHHH
Confidence 46799999999999999999999999888 45443211 00 00 111 334667788888888777
Q ss_pred HHc--CCCEEEEeCCC
Q 030169 137 MEA--ELDLVVCITEG 150 (182)
Q Consensus 137 ie~--GIk~VV~iTeG 150 (182)
.+. ++..+|. ..|
T Consensus 72 ~~~~~~id~vi~-~ag 86 (260)
T PRK06523 72 LERLGGVDILVH-VLG 86 (260)
T ss_pred HHHcCCCCEEEE-CCc
Confidence 665 5777776 555
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.16 Score=41.17 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=54.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+++++|.|++|..|+.+++.+.+.|.+++ .+...... . -...++.....++ -+..|...+..+.+++++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVV--VADRDAEA--A-----ERVAAAIAAGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEE--EecCCHHH--H-----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45799999999999999999999998887 44433211 0 0111111111112 2345778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..|+. ..|.
T Consensus 76 ~~~~~~id~vi~-~ag~ 91 (252)
T PRK06138 76 AARWGRLDVLVN-NAGF 91 (252)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 6777776 5554
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.32 Score=40.72 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++.... .++++.+.. .+ -+..|...++.+.++++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~--~~~r~~~-----------~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~ 70 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVV--GTVRSEA-----------ARADFEALHPDRALARLLDVTDFDAIDAVVA 70 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEE--EEeCCHH-----------HHHHHHhhcCCCeeEEEccCCCHHHHHHHHH
Confidence 35699999999999999999999999988 4443321 112222211 12 23557888888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 71 ~~~~~~~~~d~vv~-~ag~ 88 (277)
T PRK06180 71 DAEATFGPIDVLVN-NAGY 88 (277)
T ss_pred HHHHHhCCCCEEEE-CCCc
Confidence 87765 5777877 6555
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.37 Score=39.63 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC-CcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK-ANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~-~DvaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|..+++.+.+.|.+++ .++.... ..++..++.+ --...|...++.+.++++++
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVV--VGDIDPE-----------AGKAAADEVGGLFVPTDVTDEDAVNALFDTA 73 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEE--EEeCCHH-----------HHHHHHHHcCCcEEEeeCCCHHHHHHHHHHH
Confidence 46799999999999999999999998888 4443221 1122212111 12456778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|.
T Consensus 74 ~~~~~~id~vi~-~ag~ 89 (255)
T PRK06057 74 AETYGSVDIAFN-NAGI 89 (255)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 654 5777877 6554
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.12 Score=42.14 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=55.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~ 133 (182)
++++|+|.|++|-.|+.+++.+.+.|.+|+ .++..... .. ...++... ... =+..|...++....++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVV--LAARTAER--LD-----EVAAEIDD-LGRRALAVPTDITDEDQCANLV 73 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHHHH-hCCceEEEecCCCCHHHHHHHH
Confidence 356799999999999999999999999888 55443211 10 01122111 111 2456677788888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. .+..+|. ..|.
T Consensus 74 ~~~~~~~g~~d~vi~-~ag~ 92 (258)
T PRK07890 74 ALALERFGRVDALVN-NAFR 92 (258)
T ss_pred HHHHHHcCCccEEEE-CCcc
Confidence 887665 4777777 5554
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.083 Score=45.96 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=65.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------------Ee------------cCccccccHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------------EH------------LGLPVFNSVAEAK 112 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------------~i------------~GvPVy~Sv~ea~ 112 (182)
-.||.|+|+ |.||.-++..+...|.+++.-.++|..... +. ..+.+.+++++ .
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 82 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-F 82 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-h
Confidence 358999999 999999999999989888822344443111 00 12336677744 5
Q ss_pred hccCCcEEEEeeChHHHHHH-HHHHHHcCC-C--EE-EEeCCCCCHHHHHHHHHHh
Q 030169 113 AETKANASVIYVPPPFAAAA-IMEAMEAEL-D--LV-VCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~av~~a-~~eAie~GI-k--~V-V~iTeG~~~eD~~~l~~~a 163 (182)
+ ++|+++..+|.+...+- +...++.-. + .| +--|+++|..++..-....
T Consensus 83 ~--~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~ 136 (286)
T PRK07819 83 A--DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRP 136 (286)
T ss_pred C--CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCC
Confidence 5 79999999998776433 323333332 2 22 2237899998887754443
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.17 Score=40.96 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=51.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
.+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. .+++. .... -..+|...++.+.+++++..+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~--~~~r~~~~--~~------~~~~~-~~~~-~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVT--ATVRGPQQ--DT------ALQAL-PGVH-IEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEE--EEeCCCcc--hH------HHHhc-cccc-eEEcCCCCHHHHHHHHHHhhc
Confidence 4589999999999999999999999888 55544311 11 01111 1111 123466677778888777765
Q ss_pred cCCCEEEEeCCCC
Q 030169 139 AELDLVVCITEGI 151 (182)
Q Consensus 139 ~GIk~VV~iTeG~ 151 (182)
.++..|+. ..|.
T Consensus 70 ~~id~vi~-~ag~ 81 (225)
T PRK08177 70 QRFDLLFV-NAGI 81 (225)
T ss_pred CCCCEEEE-cCcc
Confidence 57888776 5444
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.22 Score=38.33 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=26.7
Q ss_pred eEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
||+|+|+ |.+|..+++.+...|. ++. .+|+..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~--ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKIT--LIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEE--EEcCCC
Confidence 5899999 9999999999999994 565 666654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.21 Score=41.67 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
++++|.|++|-.|+.+++.+.+.|.+|+ .++.... .++++.+. +++ +..|...++.+.++++++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 67 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVW--ATARKAE-----------DVEALAAA-GFTAVQLDVNDGAALARLAEELE 67 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHC-CCeEEEeeCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999888 4444321 12222221 233 3478889999999988887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|. ..|+
T Consensus 68 ~~~~~id~vi~-~ag~ 82 (274)
T PRK05693 68 AEHGGLDVLIN-NAGY 82 (274)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 65 5777887 6664
|
|
| >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.072 Score=48.30 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=66.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE--------------------------ec--Ccccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE--------------------------HL--GLPVFNS-- 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~--------------------------i~--GvPVy~S-- 107 (182)
.||.|-|| ||.|+.+.+.+.+. +++|| |--||...-+. ++ -+++|..
T Consensus 3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vv-aiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~d 80 (337)
T PTZ00023 3 VKLGINGF-GRIGRLVFRAALEREDVEVV-AINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKD 80 (337)
T ss_pred eEEEEECc-ChHHHHHHHHHHhcCCeEEE-EecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCC
Confidence 48999999 99999999987754 59999 75554321110 11 3556643
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
+++++ .+.++|+++..+......+-+..++++|.+.|++ +.
T Consensus 81 p~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~i-Sa 122 (337)
T PTZ00023 81 PAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM-SA 122 (337)
T ss_pred hhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEe-CC
Confidence 77765 3458999999999999999999999999999887 53
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.099 Score=50.61 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=71.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe------------------EecCccccccHHHHHhccCCc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT------------------EHLGLPVFNSVAEAKAETKAN 118 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~------------------~i~GvPVy~Sv~ea~~~~~~D 118 (182)
..+|+|.|++|..|+++++.+.+++ -+|+ -++.....+ .+.++-=++.+++++++++||
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p~~i~--l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNPKEII--LFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCCCEEE--EecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 4679999999999999999999888 4455 333322111 123444455688888888899
Q ss_pred EEEEe-----------eChHH-------HHHHHHHHHHcCCCEEEEeCC----------CCCHHHHHHHHHHh
Q 030169 119 ASVIY-----------VPPPF-------AAAAIMEAMEAELDLVVCITE----------GIPQHDMVINFTRV 163 (182)
Q Consensus 119 vaVdf-----------Vpp~a-------v~~a~~eAie~GIk~VV~iTe----------G~~~eD~~~l~~~a 163 (182)
++.=. =|.++ ++.+++.|+++|++.+|+++| |.+..-++++...+
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaTKr~aE~~~~a~ 400 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGATKRLAEKLFQAA 400 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHHHHHHHHHHHHH
Confidence 87532 22232 456788999999999999886 55556666665555
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.34 Score=39.00 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+++ +++...... -+-...+.+-......+ +..|...++....+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVI--VLDIHPMRG----RAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALD 79 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE--EEcCccccc----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999999998888 554332110 11111111112111122 2356677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..||. ..|+
T Consensus 80 ~~~~~~~~~d~vi~-~ag~ 97 (249)
T PRK12827 80 AGVEEFGRLDILVN-NAGI 97 (249)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87765 5777776 6664
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.32 Score=40.06 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
+.+++|.|++|-.|..+++.+.+.|.++++-...+.... .. .....+.++..+.+ +-+|+..++.+.++++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 81 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASK---AD---AEETVAAVKAAGAKAVAFQADLTTAAAVEKLFD 81 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccch---HH---HHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHH
Confidence 467999999999999999999999988651222222211 00 11111112211222 3467888888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 82 ~~~~~~~~id~li~-~ag~ 99 (257)
T PRK12744 82 DAKAAFGRPDIAIN-TVGK 99 (257)
T ss_pred HHHHhhCCCCEEEE-CCcc
Confidence 88765 5777776 6675
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.25 Score=40.02 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=55.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~ 133 (182)
+..+++|.|++|..|+.+++.+.+.|.+|+ .++..... .. .+.+.+++. +++ +..|...++....++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~--~~~r~~~~--~~------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLA--LVARSQDA--LE------ALAAELRSTGVKAAAYSIDLSNPEAIAPGI 74 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH------HHHHHHHhCCCcEEEEEccCCCHHHHHHHH
Confidence 446799999999999999999999998888 45543211 11 111111111 222 345777888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|. ..|.
T Consensus 75 ~~~~~~~~~id~lv~-~ag~ 93 (241)
T PRK07454 75 AELLEQFGCPDVLIN-NAGM 93 (241)
T ss_pred HHHHHHcCCCCEEEE-CCCc
Confidence 887765 5777776 6665
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.078 Score=48.21 Aligned_cols=88 Identities=22% Similarity=0.194 Sum_probs=58.0
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe----EecCcccccc-HHHHHhcc--CCcEEEEeeC
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----EHLGLPVFNS-VAEAKAET--KANASVIYVP 125 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~----~i~GvPVy~S-v~ea~~~~--~~DvaVdfVp 125 (182)
-.+.|..+|+|+|+ |-.|+..++..+..|.+++ .++.+..-. +...--++.+ -++..+.. .+|+++++++
T Consensus 162 ~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Vi--a~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 162 ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVI--AITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEE--EEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 35788899999999 8899999999999999999 555544211 2222223332 12222222 3999999999
Q ss_pred hHHHHHHHHHHHHcCCCEE
Q 030169 126 PPFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~V 144 (182)
....+....+++.|=..|
T Consensus 239 -~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 239 -PATLEPSLKALRRGGTLV 256 (339)
T ss_pred -hhhHHHHHHHHhcCCEEE
Confidence 666666666666644443
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.23 Score=41.21 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|..+++.+.+.|.+++ .++..... . ..+.+.++.. +++ .-+|...++.+..+++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi--~~~r~~~~--~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVL--IAARTESQ--L------DEVAEQIRAAGRRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 46799999999999999999999999988 55543211 0 1111212111 222 2367888899989888
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..||. ..|
T Consensus 80 ~~~~~~~~id~vi~-~Ag 96 (263)
T PRK07814 80 QAVEAFGRLDIVVN-NVG 96 (263)
T ss_pred HHHHHcCCCCEEEE-CCC
Confidence 88775 6888887 455
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.094 Score=48.58 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=62.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccC---------------C----------CCCeE--ec--Cccccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTP---------------K----------KGGTE--HL--GLPVFN 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp---------------~----------~~G~~--i~--GvPVy~ 106 (182)
.||+|.|| |+.|+.+.+.+.+. ..+|+ | ||. . ..|+. ++ .++|+.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evv-a-INd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-A-INDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEE-E-EcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEE
Confidence 68999999 99999999988765 36777 4 321 0 01111 12 366665
Q ss_pred c--HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 S--VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 S--v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
. +++.+ .+.++|+++..+......+.+...+++|.+.|++
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~i 180 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 180 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEe
Confidence 2 66654 3358999999999999999999999999999887
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.31 Score=40.47 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=53.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
.+++|.|++|..|..+++.+.+.|.+|+ .++..... .. . -.-+..|...+..+.++++++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~Vi--~~~r~~~~--~~------------~--~~~~~~D~~~~~~i~~~~~~~~~ 68 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVI--NFDIKEPS--YN------------D--VDYFKVDVSNKEQVIKGIDYVIS 68 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEE--EEeCCccc--cC------------c--eEEEEccCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999888 44433211 00 0 01234577888888888888876
Q ss_pred c--CCCEEEEeCCCC
Q 030169 139 A--ELDLVVCITEGI 151 (182)
Q Consensus 139 ~--GIk~VV~iTeG~ 151 (182)
. ++..+|+ ..|+
T Consensus 69 ~~~~id~li~-~Ag~ 82 (258)
T PRK06398 69 KYGRIDILVN-NAGI 82 (258)
T ss_pred HcCCCCEEEE-CCCC
Confidence 5 5788887 5554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.22 Score=42.64 Aligned_cols=87 Identities=23% Similarity=0.231 Sum_probs=59.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecC-ccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLG-LPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~G-vPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+++.|.|. |++|..++..+...|.+|+++.-+..+.-. +..+ .=.=.+.+++.+ ..|++++.||-.+..+++.
T Consensus 2 ~~~~i~Gt-GniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~--~aDVVvLAVP~~a~~~v~~ 78 (211)
T COG2085 2 MIIAIIGT-GNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAA--LADVVVLAVPFEAIPDVLA 78 (211)
T ss_pred cEEEEecc-ChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHh--cCCEEEEeccHHHHHhHHH
Confidence 44556665 999999999999999888845443332110 0111 112234677777 7999999999999999999
Q ss_pred HHHHc-CCCEEEEeC
Q 030169 135 EAMEA-ELDLVVCIT 148 (182)
Q Consensus 135 eAie~-GIk~VV~iT 148 (182)
+..+. +=|.||=.|
T Consensus 79 ~l~~~~~~KIvID~t 93 (211)
T COG2085 79 ELRDALGGKIVIDAT 93 (211)
T ss_pred HHHHHhCCeEEEecC
Confidence 99875 535555434
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.16 Score=43.47 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=27.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
+.||+|+|+ |..|..+++.+...| .+|. -+|+..
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~--lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGVGTLT--LVDFDT 66 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEE--EEcCCE
Confidence 478999999 999999999999988 4444 455443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.013 Score=45.05 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=46.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCC-eEe---cCc----cccccHHHHHhccCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGG-TEH---LGL----PVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G-~~i---~Gv----PVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
..+|+|+|+ |.||..+++.+.+.| .++. .+++.... ++. .+. ..+.+.+++.+ ++|+++..+|+..
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~--v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGAAKIV--IVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEE--EEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCC
Confidence 467999998 999999999998876 4455 55554311 111 121 24556666655 7999999999987
Q ss_pred H
Q 030169 129 A 129 (182)
Q Consensus 129 v 129 (182)
.
T Consensus 94 ~ 94 (155)
T cd01065 94 K 94 (155)
T ss_pred C
Confidence 4
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.27 Score=44.99 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=70.2
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
-.++|-.+|.|.|+-| .|+..++..+.+|++++ .++.... .-+|+++....|.-++++--..-.+.
T Consensus 177 ~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~--vis~~~~-----------kkeea~~~LGAd~fv~~~~d~d~~~~ 242 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVT--VISTSSK-----------KKEEAIKSLGADVFVDSTEDPDIMKA 242 (360)
T ss_pred cCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEE--EEeCCch-----------hHHHHHHhcCcceeEEecCCHHHHHH
Confidence 4566899999999956 99999999999999999 6666542 23677887888999999954555566
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
+..+.+-++..|..+ +++.++.+.++.
T Consensus 243 ~~~~~dg~~~~v~~~----a~~~~~~~~~~l 269 (360)
T KOG0023|consen 243 IMKTTDGGIDTVSNL----AEHALEPLLGLL 269 (360)
T ss_pred HHHhhcCcceeeeec----cccchHHHHHHh
Confidence 678888888888884 444444444444
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.1 Score=48.42 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=56.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHHH-HH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA-IM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a-~~ 134 (182)
+..+|+|+|+ |..|..+++.+...|.++++..++|.+... ...|+.+. +++++.+ .+|++++.+....+.+. ..
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~--~aDVVI~atG~~~~i~~~~l 276 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVK--EGDIFVTTTGNKDIITGEHF 276 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHc--CCCEEEECCCCHHHHHHHHH
Confidence 4567999999 999999999999999888844556654221 01255443 3467666 78999999875554443 25
Q ss_pred HHHHcCCCEE
Q 030169 135 EAMEAELDLV 144 (182)
Q Consensus 135 eAie~GIk~V 144 (182)
++++.|-..+
T Consensus 277 ~~mk~Ggilv 286 (413)
T cd00401 277 EQMKDGAIVC 286 (413)
T ss_pred hcCCCCcEEE
Confidence 5555555443
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.15 Score=42.15 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eAi 137 (182)
++++|.|++|..|+.+++.+.+.|.+++ .++..... .-...+++.+..++ -+..|...++.+.++++++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~--~~~r~~~~-------~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVV--ISSRNEEN-------LEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEE--EEeCCHHH-------HHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999998877 44443211 01112222111112 13456778888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|+ ..|+
T Consensus 72 ~~~g~id~li~-naG~ 86 (259)
T PRK08340 72 ELLGGIDALVW-NAGN 86 (259)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 64 5777777 6665
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=47.96 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=54.3
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--Ee------cCcc-cccc-HHHHHhccCCcEEEEeeC
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EH------LGLP-VFNS-VAEAKAETKANASVIYVP 125 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i------~GvP-Vy~S-v~ea~~~~~~DvaVdfVp 125 (182)
.+.+||+|.|++|-.|+.+++.+++.|.+|+ + ++....+. .. .++. +..+ +++++. ++|+++-+.-
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~-~-ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~--~~D~ViHlAa 192 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVI-V-VDNFFTGRKENVMHHFSNPNFELIRHDVVEPILL--EVDQIYHLAC 192 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEE-E-EeCCCccchhhhhhhccCCceEEEECCccChhhc--CCCEEEEeee
Confidence 3668999999999999999999999999998 4 43211110 00 0111 1112 333344 6888776652
Q ss_pred ----------hH--------HHHHHHHHHHHcCCCEEEE
Q 030169 126 ----------PP--------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 ----------p~--------av~~a~~eAie~GIk~VV~ 146 (182)
|. ....+++.|.+.|++.|.+
T Consensus 193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~ 231 (442)
T PLN02206 193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 231 (442)
T ss_pred ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 11 1356677788889876655
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.23 Score=49.66 Aligned_cols=109 Identities=13% Similarity=-0.031 Sum_probs=69.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHH--------hC--CceEEeeccCCCCCeEecCcc---------------ccccHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE--------YG--TKMVVGGVTPKKGGTEHLGLP---------------VFNSVAEA 111 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~--------~g--~~IV~AgVdp~~~G~~i~GvP---------------Vy~Sv~ea 111 (182)
+..+|++.|+ |.-|+.+.+.+.+ +| ++|+ +-.+....--...|+. -.+.+.|.
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~-~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~ 534 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLV-GVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLW 534 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEE-EEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHH
Confidence 4578999999 9999999886652 35 4455 4333322100111221 11122333
Q ss_pred HhccCC--cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHhcccch
Q 030169 112 KAETKA--NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI---PQHDMVINFTRVNILLV 168 (182)
Q Consensus 112 ~~~~~~--DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~---~~eD~~~l~~~ak~ipv 168 (182)
+.+.++ +++|+.++.........+|+++|+++|-+ -... +.+...+|.++|++-.+
T Consensus 535 i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVta-NK~~~a~~~~~~~~l~~~a~~~~~ 595 (810)
T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISA-NKLAGSSPSNFYRQIKDAFAKTGR 595 (810)
T ss_pred HhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcC-CcccccccHHHHHHHHHHHHHcCC
Confidence 433333 59999999988888888999999998755 3322 45788899999875443
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.18 Score=46.22 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=62.4
Q ss_pred CceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCe-E----ec------------CccccccHHHHHhccCCcE
Q 030169 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGT-E----HL------------GLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~-~----i~------------GvPVy~Sv~ea~~~~~~Dv 119 (182)
..+|.|+|+ |+.|+.+++.+. .+|++|+ ++||..... + .. ++..+.+++|+++ +.|+
T Consensus 165 gktvGIiG~-G~IG~~vA~~l~~~fGm~V~--~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~--~sDi 239 (386)
T PLN02306 165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI--YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR--EADV 239 (386)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCEEE--EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh--hCCE
Confidence 456999999 999999999985 8999999 888764211 0 00 1122458999998 7999
Q ss_pred EEEeeChH-HHHHHHHHHHHcCCC---EEEEeCCCCCHHHHHHHHHH
Q 030169 120 SVIYVPPP-FAAAAIMEAMEAELD---LVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 120 aVdfVpp~-av~~a~~eAie~GIk---~VV~iTeG~~~eD~~~l~~~ 162 (182)
+++.+|-. .....+.+..=.-+| .+|+++-|=-+ |...|.++
T Consensus 240 V~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lV-De~AL~~A 285 (386)
T PLN02306 240 ISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVI-DEVALVEH 285 (386)
T ss_pred EEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCcccc-CHHHHHHH
Confidence 99988843 333333332222222 46775555444 44444444
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.18 Score=50.33 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=71.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-------C--CceEEeeccCCCCCeEecCccc---------------cccHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-------G--TKMVVGGVTPKKGGTEHLGLPV---------------FNSVAEAK 112 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-------g--~~IV~AgVdp~~~G~~i~GvPV---------------y~Sv~ea~ 112 (182)
+..+|.+.|+ |.-|+.+.+.+.+. | ++|+ +-.+....--...|+.. .+.+-|.+
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~-~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVC-GIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLV 541 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEE-EEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHH
Confidence 5788999998 99999998876531 3 4455 43332221000112221 11223333
Q ss_pred hcc--CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHhcccchhc
Q 030169 113 AET--KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI---PQHDMVINFTRVNILLVAF 170 (182)
Q Consensus 113 ~~~--~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~---~~eD~~~l~~~ak~ipv~~ 170 (182)
... ..|++|+.++-....+...+|+++|+++|-+ -.+. |.++..+|.++|++-.+.+
T Consensus 542 ~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVta-NK~~~a~~~~~~~el~~~a~~~~~~~ 603 (819)
T PRK09436 542 KEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTP-NKKANTSSYAYYHQLREAARKSRRKF 603 (819)
T ss_pred hhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcC-CchhccCCHHHHHHHHHHHHHcCCeE
Confidence 322 3599999999988888889999999999855 3332 3368899999998766544
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.31 Score=39.57 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
+.+|+|.|++|..|+.+++.+.+.|.+++ .++..... .. ....+.... .++. +..|+..++.+.+++++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVV--IADLNDEA--AA-----AAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEE--EEeCCHHH--HH-----HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999999999998888 55544321 00 011121110 0121 44577888888888887
Q ss_pred HHHc--CCCEEEEeCCC
Q 030169 136 AMEA--ELDLVVCITEG 150 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG 150 (182)
..+. ++..||. ..|
T Consensus 75 ~~~~~~~~d~vi~-~a~ 90 (258)
T PRK12429 75 AVETFGGVDILVN-NAG 90 (258)
T ss_pred HHHHcCCCCEEEE-CCC
Confidence 7665 6777777 444
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.19 Score=43.57 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=61.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccc-------ccHHHHHhccCCcEEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVF-------NSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy-------~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.++|+|.|.| ..|+.+++.+.+.|.++++.-+..... .+..+++++ ..+++.+.++++|++||.++|-+..
T Consensus 2 ~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~-~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~ 79 (248)
T PRK08057 2 MPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGG-PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQ 79 (248)
T ss_pred CceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCC-cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHH
Confidence 3578999975 488999999988887777233333221 223355554 3377778788999999999998765
Q ss_pred ---HHHHHHHHcCCCEEEE
Q 030169 131 ---AAIMEAMEAELDLVVC 146 (182)
Q Consensus 131 ---~a~~eAie~GIk~VV~ 146 (182)
.+.+-|-+.||+.+=.
T Consensus 80 is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 80 ISANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHHHHHHHhCCcEEEE
Confidence 6677777889998743
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.16 Score=46.42 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=59.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--CCeEe-----------------cCcccccc--HHHHHhccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--GGTEH-----------------LGLPVFNS--VAEAKAETKA 117 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--~G~~i-----------------~GvPVy~S--v~ea~~~~~~ 117 (182)
+||.|+|. |.||..++..+. .|.+++ |+|... ...-. .+.-...+ .+++.+ ++
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA-~G~~Vi--gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~a 74 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIA-QNHEVV--ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DA 74 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCcEE--EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CC
Confidence 47999998 999999995554 588888 655433 11000 11112122 456555 79
Q ss_pred cEEEEeeChH-----------HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 118 NASVIYVPPP-----------FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 118 DvaVdfVpp~-----------av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
|++++.||.. .+.++++...+..-..+|++.+=+|+.-.+++.+...+
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~ 133 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRT 133 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhc
Confidence 9999999954 44555544444222223333555666666666665443
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.18 Score=45.75 Aligned_cols=106 Identities=17% Similarity=0.057 Sum_probs=65.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh--------C--CceEEeeccCCCCCe-EecCcc---ccccH-----HHHHhccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY--------G--TKMVVGGVTPKKGGT-EHLGLP---VFNSV-----AEAKAETKA 117 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~--------g--~~IV~AgVdp~~~G~-~i~GvP---Vy~Sv-----~ea~~~~~~ 117 (182)
+..||.|.|+ |.-|+.+.+.+.+. | ++++ +..+....-. .....+ ...+. .+.....++
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVV-AVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDI 79 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEE-EEEeccchhcccccccchhhheecccccccHhhhccccC
Confidence 3578999999 99999998877753 3 4455 4444433111 122222 22234 555555578
Q ss_pred cEEEEeeCh--HHH--HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 118 NASVIYVPP--PFA--AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 118 DvaVdfVpp--~av--~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
|+.+..++. ..+ .+...+|+++|+++|=. =.+.=-..-.+|.++|++
T Consensus 80 dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTa-NK~~lA~~~~el~~~A~~ 130 (333)
T COG0460 80 DVVVELVGGDVEPAEPADLYLKALENGKHVVTA-NKALLALHYHELREAAEK 130 (333)
T ss_pred CEEEecCcccCCchhhHHHHHHHHHcCCeEECC-CchHhHhhHHHHHHHHHH
Confidence 888887776 334 48999999999998733 222222236677777765
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.37 Score=38.47 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=51.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEE---EEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS---VIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dva---VdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +++..... .. .+.+..++...++. .|+..+..+.++++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~--~~~r~~~~--~~------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVV--IYDSNEEA--AE------ALAAELRAAGGEARVLVFDVSDEAAVRALIE 74 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCChhH--HH------HHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 35799999999999999999999998866 66554311 10 11111111122222 46777887878777
Q ss_pred HHHHc--CCCEEEEeC
Q 030169 135 EAMEA--ELDLVVCIT 148 (182)
Q Consensus 135 eAie~--GIk~VV~iT 148 (182)
+..+. .+..|+..+
T Consensus 75 ~~~~~~~~id~vi~~a 90 (246)
T PRK05653 75 AAVEAFGALDILVNNA 90 (246)
T ss_pred HHHHHhCCCCEEEECC
Confidence 76543 567777633
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.41 Score=44.03 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=26.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G~~V~ 75 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRGYEVA 75 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 5799999999999999999999998888
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.27 Score=40.27 Aligned_cols=74 Identities=19% Similarity=0.109 Sum_probs=47.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
+|++|.|++|.+|+.+++.+.+.|.+++ .++.... .++++.++.+.+ +..|...++.+.+++++..
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 67 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVT--LVGARRD-----------DLEVAAKELDVDAIVCDNTDPASLEEARGLFP 67 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHhccCcEEecCCCCHHHHHHHHHHHh
Confidence 4799999999999999999999998888 4444321 112222211122 2245666777766665543
Q ss_pred HcCCCEEEE
Q 030169 138 EAELDLVVC 146 (182)
Q Consensus 138 e~GIk~VV~ 146 (182)
+ ++..+|+
T Consensus 68 ~-~id~lv~ 75 (223)
T PRK05884 68 H-HLDTIVN 75 (223)
T ss_pred h-cCcEEEE
Confidence 2 5777776
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.43 Score=40.84 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=28.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeec
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV 90 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV 90 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ +.+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~-~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVH-AAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEE-EEE
Confidence 45799999999999999999999999988 543
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.095 Score=49.68 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=64.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..+|+|+|+ |+.|+.+++.+..+|.+|++-.++|.+... ...|+.+. +++|+++ ..|+++..+....+. ..+.
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~--~ADVVI~tTGt~~vI--~~e~ 327 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVS--EADIFVTTTGNKDII--MVDH 327 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHh--hCCEEEECCCCccch--HHHH
Confidence 467999999 999999999999999998833556653211 12356554 5788887 789999866644322 1333
Q ss_pred HHc-CCCEEEEeCCCC-CHHHHHHHHHHh
Q 030169 137 MEA-ELDLVVCITEGI-PQHDMVINFTRV 163 (182)
Q Consensus 137 ie~-GIk~VV~iTeG~-~~eD~~~l~~~a 163 (182)
++. +-..+++-+.++ ++=|...|.+++
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL~~~~ 356 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGLETYP 356 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHHhhcc
Confidence 333 222233323443 677888888773
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.42 Score=40.86 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ . ++....... ...+++..++...+ +..|...++.+.++++
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~~Vi-~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 120 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGADVA-I-SYLPVEEED------AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVH 120 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEE-E-ecCCcchhh------HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHH
Confidence 35799999999999999999999999988 3 333221100 11223322221212 4567888899999988
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 121 ~~~~~~g~id~lv~-~Ag~ 138 (294)
T PRK07985 121 EAHKALGGLDIMAL-VAGK 138 (294)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 88765 5777776 4443
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.62 Score=37.22 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
+.+++|.|++|..|+.+++.+.+.|.++++...++.. . . -.+ .+++... .++. +-.|...++.+.+++++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~-~--~--~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASSEA-G--A--EAL---VAEIGALGGKALAVQGDVSDAESVERAVDE 76 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh-H--H--HHH---HHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 4579999999999999999999999888613333221 1 0 011 1121111 1222 22377888888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..|+. ..|.
T Consensus 77 ~~~~~~~id~vi~-~ag~ 93 (248)
T PRK05557 77 AKAEFGGVDILVN-NAGI 93 (248)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7664 6777877 5554
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.08 Score=47.93 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=62.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeE----------------------------ec--Ccccc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTE----------------------------HL--GLPVF 105 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~----------------------------i~--GvPVy 105 (182)
+..||.|.|+ |++|+.+.+.+.+ .+.+++ |-.||...-+. ++ .++|+
T Consensus 4 ~~lrVaI~G~-GrIGr~~~r~~~~~~~velv-aI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 4 KKIRIGINGF-GRIGRLVARVVLQRDDVELV-AVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CceEEEEEee-cHHHHHHHHHHhhCCCcEEE-EEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 3579999999 9999999997775 469999 76665332211 01 12232
Q ss_pred cc--HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 106 NS--VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 106 ~S--v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
.. .++.+ .+.++|+++..+......+.+..++++|.+.|++
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vii 125 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVI 125 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEe
Confidence 22 22322 1247999999999999999999999999988877
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.2 Score=46.30 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=44.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--CeEecC-cc---------------ccccHHHHHhccCCc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--GTEHLG-LP---------------VFNSVAEAKAETKAN 118 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--G~~i~G-vP---------------Vy~Sv~ea~~~~~~D 118 (182)
+.+||.|+|. |.||.-.+..+.+ +.+++ |+|.... ..-..| .| .+.+..++.+ ++|
T Consensus 5 ~~mkI~vIGl-GyvGlpmA~~la~-~~~V~--g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~--~ad 78 (425)
T PRK15182 5 DEVKIAIIGL-GYVGLPLAVEFGK-SRQVV--GFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIK--ECN 78 (425)
T ss_pred CCCeEEEECc-CcchHHHHHHHhc-CCEEE--EEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc--CCC
Confidence 3489999998 9999999888665 68888 6665441 111112 22 3445445555 799
Q ss_pred EEEEeeChH
Q 030169 119 ASVIYVPPP 127 (182)
Q Consensus 119 vaVdfVpp~ 127 (182)
++++.||-.
T Consensus 79 vvii~Vptp 87 (425)
T PRK15182 79 FYIITVPTP 87 (425)
T ss_pred EEEEEcCCC
Confidence 999999954
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.16 Score=41.81 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=54.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc---cCC-cEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE---TKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~---~~~-DvaVdfVpp~av~~a~~ 134 (182)
++++|.|++|..|+.+++.+.+.|.+++ .+++.... ++++.+. ..+ -+.+|....+.+.++++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 68 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVG--AYDINEAG-----------LAALAAELGAGNAWTGALDVTDRAAWDAALA 68 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEE--EEeCCHHH-----------HHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 3599999999999999999999998887 45443211 2222111 122 23567888898888888
Q ss_pred HHHHc---CCCEEEEeCCCC
Q 030169 135 EAMEA---ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~---GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|.
T Consensus 69 ~~~~~~~~~id~vi~-~ag~ 87 (260)
T PRK08267 69 DFAAATGGRLDVLFN-NAGI 87 (260)
T ss_pred HHHHHcCCCCCEEEE-CCCC
Confidence 87653 6777877 5554
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.21 Score=47.75 Aligned_cols=81 Identities=15% Similarity=0.013 Sum_probs=55.4
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC----------
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP---------- 125 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp---------- 125 (182)
.+.+||+|.|++|-.|+.+++.+.+.|.++. -.. + .+.=...+.+.++..+||++|-+.-
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~-~~~-----~----~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~ 447 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYE-YGK-----G----RLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWC 447 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEE-eec-----c----ccccHHHHHHHHHhhCCCEEEECCcccCCCCCChH
Confidence 3568999999999999999999998887773 121 1 1111233555566667888874431
Q ss_pred -----------hHHHHHHHHHHHHcCCCEEEE
Q 030169 126 -----------PPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 -----------p~av~~a~~eAie~GIk~VV~ 146 (182)
-..+..+++.|.+.|++.++.
T Consensus 448 ~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~ 479 (668)
T PLN02260 448 ESHKVETIRANVVGTLTLADVCRENGLLMMNF 479 (668)
T ss_pred HhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEE
Confidence 123556788888999987765
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.22 Score=40.66 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+.+|+|.|++|..|..+++.+.+.|.+++ .++...... ....+. ....+ =...|...+..+.++++++
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi--~~~r~~~~~--------~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVA--LLDRSEDVA--------EVAAQL-LGGNAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHHH--------HHHHHh-hCCceEEEEecCCCHHHHHHHHHHH
Confidence 46799999999999999999999998887 555433110 001111 11111 2346778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|.
T Consensus 84 ~~~~~~~d~vi~-~ag~ 99 (255)
T PRK06841 84 ISAFGRIDILVN-SAGV 99 (255)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 765 5777776 5554
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.48 Score=39.34 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc-EEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D-vaVdfVpp~av~~a~~eA 136 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++.... .++++.++. .+. +..|+..++.+.++++++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVA--IGDLDEA-----------LAKETAAELGLVVGGPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEE--EEECCHH-----------HHHHHHHHhccceEEEccCCCHHHHHHHHHHH
Confidence 5699999999999999999999998877 3332210 011111111 122 345778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 73 ~~~~~~id~li~-~ag~ 88 (273)
T PRK07825 73 EADLGPIDVLVN-NAGV 88 (273)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 764 6777776 6664
|
|
| >PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.086 Score=47.67 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----------------E---------ec--Cccccc--cH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----------------E---------HL--GLPVFN--SV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----------------~---------i~--GvPVy~--Sv 108 (182)
.||.|-|| ||.|+.+.+.+.+. +++|| |--|+..... + ++ .+.|+. ++
T Consensus 3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vv-aiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (331)
T PRK15425 3 IKVGINGF-GRIGRIVFRAAQKRSDIEIV-AINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 80 (331)
T ss_pred eEEEEEee-ChHHHHHHHHHHHCCCCEEE-EEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCCh
Confidence 48999999 99999999987754 59999 6433221000 0 11 355553 46
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++.. .+.++|+++..+......+-+..++++|.+.|++
T Consensus 81 ~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i 119 (331)
T PRK15425 81 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119 (331)
T ss_pred hhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEe
Confidence 6654 3458999999999998999999999999998887
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.46 Score=38.24 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. .. ..+..+...++ +..|...+..+.+.++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~--~~~r~~~~--~~--~~---~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVA--ITARDQKE--LE--EA---AAELNNKGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEE--EeeCCHHH--HH--HH---HHHHhccCcEEEEEccCCCHHHHHHHHHHH
Confidence 46799999999999999999998898888 44433211 00 01 11111111222 234677788888888877
Q ss_pred HHc--CCCEEEEeCCC
Q 030169 137 MEA--ELDLVVCITEG 150 (182)
Q Consensus 137 ie~--GIk~VV~iTeG 150 (182)
.+. ++..||. ..|
T Consensus 77 ~~~~~~~d~vi~-~ag 91 (237)
T PRK07326 77 VAAFGGLDVLIA-NAG 91 (237)
T ss_pred HHHcCCCCEEEE-CCC
Confidence 664 6788887 444
|
|
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.49 Score=34.67 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=57.5
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEE---eeChHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVI---YVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVd---fVpp~av~~a~~eA 136 (182)
+|+|+|....+-....+.+.++|++++ -. -.++|. -+--..+++.+. ++|++|+ |+.+.....+-++|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~--~h-g~~~~~----~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~a 71 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLI--HH-GRDGGD----EKKASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAA 71 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEE--EE-ecCCCC----ccchhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHH
Confidence 589999544787888888889998887 33 112120 111112445455 6898876 46788999999999
Q ss_pred HHcCCCEEEEeCCCCC
Q 030169 137 MEAELDLVVCITEGIP 152 (182)
Q Consensus 137 ie~GIk~VV~iTeG~~ 152 (182)
-+.++|.+.+=+.|++
T Consensus 72 kk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 72 KKYGIPIIYSRSRGVS 87 (97)
T ss_pred HHcCCcEEEECCCCHH
Confidence 9999999988445554
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.57 Score=37.79 Aligned_cols=84 Identities=20% Similarity=0.156 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
.++++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...+++... .+++ ..+|+..++.+.+++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVA--FNDGLAAE--AR-----ELAAALEAAGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 46799999999999999999999999888 44432211 10 111221111 1222 24577888888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..++. ..|.
T Consensus 78 ~~~~~~~id~vi~-~ag~ 94 (250)
T PRK12939 78 AAAALGGLDGLVN-NAGI 94 (250)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7765 5777777 5555
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.45 Score=38.45 Aligned_cols=80 Identities=20% Similarity=0.142 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++.... .+++..++...+ +-.|....+...++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVA--ITGRDPA-----------SLEAARAELGESALVIRADAGDVAAQKALAQ 72 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EecCCHH-----------HHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence 35799999999999999999999998888 5544321 122222221112 2346677777777777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|. ..|.
T Consensus 73 ~~~~~~~~id~vi~-~ag~ 90 (249)
T PRK06500 73 ALAEAFGRLDAVFI-NAGV 90 (249)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 66654 5677776 4443
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.64 Score=37.82 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~eA 136 (182)
+.|+|.|++|-.|+.+++.+.+.|.+++ .++..... . .-...++..+. .+++ +-.|+..++...++++++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi--~~~r~~~~-~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLA--INDRPDDE-E-----LAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEE--EEecCchh-H-----HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4588999999999999999999998888 45533211 0 00111111111 1222 246788888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..||. ..|+
T Consensus 75 ~~~~~~id~vi~-~ag~ 90 (256)
T PRK12745 75 QAAWGRIDCLVN-NAGV 90 (256)
T ss_pred HHhcCCCCEEEE-CCcc
Confidence 765 5777777 6665
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.46 Score=41.17 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=26.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.+|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~ 28 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVH 28 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEE
Confidence 3699999999999999999999999988
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.36 Score=43.99 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=27.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
++.||+|+|+ |..|..+++.+...| .+|. .||+..
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~--lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLG--IVEFDV 76 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEE--EECCCE
Confidence 4578999999 999999999999989 4444 556543
|
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.11 Score=47.35 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----------------E---------ec--Ccccc--ccH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----------------E---------HL--GLPVF--NSV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----------------~---------i~--GvPVy--~Sv 108 (182)
+||.|-|| ||.|+.+.+.+.+. +++|| |--|+..... + ++ .++|+ +++
T Consensus 3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vv-aINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (343)
T PRK07729 3 TKVAINGF-GRIGRMVFRKAIKESAFEIV-AINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDP 80 (343)
T ss_pred eEEEEECc-ChHHHHHHHHHhhcCCcEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCh
Confidence 58999999 99999999987754 48999 6333211000 0 11 35565 246
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iT 148 (182)
++++ .+.++|+++..+......+.+..++++|.+.|++ +
T Consensus 81 ~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i-S 120 (343)
T PRK07729 81 KELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVIL-T 120 (343)
T ss_pred hhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEe-C
Confidence 6664 3358999999999999999999999999999887 5
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.11 Score=46.80 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=57.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--Ce--EecCccccc-c------HHHH-HhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--GT--EHLGLPVFN-S------VAEA-KAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--G~--~i~GvPVy~-S------v~ea-~~~~~~DvaVdfVpp 126 (182)
|+|+|+|+ |++|+.+++.+.+.|.+++ .+++... .. +..+++++. + ++++ ++ ++|+++..++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~--vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~--~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVT--VIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAE--DADLLIAVTDS 75 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEE--EEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCC--cCCEEEEecCC
Confidence 47999999 9999999999999898888 6654321 10 012444442 1 2332 22 78999999987
Q ss_pred HHHHH-HHHHHHHc-CCCEEEEeCCC
Q 030169 127 PFAAA-AIMEAMEA-ELDLVVCITEG 150 (182)
Q Consensus 127 ~av~~-a~~eAie~-GIk~VV~iTeG 150 (182)
..... ++..+.+. +.+.+|+-+..
T Consensus 76 ~~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 76 DETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred hHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 65554 44555554 77777775544
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.14 Score=39.26 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=57.6
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCC---------------CCeEecCccccccHHHHHhccCCcEEEEeeC
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK---------------GGTEHLGLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~---------------~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
|+|+|+ |.+|...+-.+.+.|.++. .+.... .|++....+.+..-. .....++|.++++|.
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~~V~--l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGHDVT--LVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAP-SADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTCEEE--EEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSH-GHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCCceE--EEEccccHHhhhheeEEEEecccceecccccccCcc-hhccCCCcEEEEEec
Confidence 689999 9999999998887776655 333222 011112222222222 112237999999999
Q ss_pred hHHHHHHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030169 126 PPFAAAAIMEAMEAELD--LVVCITEGIPQHD 155 (182)
Q Consensus 126 p~av~~a~~eAie~GIk--~VV~iTeG~~~eD 155 (182)
.....+++......--+ .|+.+--|+..++
T Consensus 77 a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~ 108 (151)
T PF02558_consen 77 AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEE 108 (151)
T ss_dssp GGGHHHHHHHHCTGEETTEEEEEESSSSSHHH
T ss_pred ccchHHHHHHHhhccCCCcEEEEEeCCCCcHH
Confidence 99999998886555333 4676688988663
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.28 Score=39.54 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++..... .-...+++.+ ...+ .-+|...++.+.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi--~~~r~~~~-------~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLA--LIDLNQEK-------LEEAVAECGA-LGTEVRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-------HHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHH
Confidence 45799999999999999999999998877 55544311 1111222211 1222 3566777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..||. ..|.
T Consensus 75 ~~~~~~~~id~vi~-~ag~ 92 (253)
T PRK08217 75 QIAEDFGQLNGLIN-NAGI 92 (253)
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 77653 5788887 6564
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.32 Score=39.75 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--Cc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+++ .++..... .. ...+.+++.. +. ...|...++.+.++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~--~~~r~~~~--~~------~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVV--VADRDAAG--GE------ETVALIREAGGEALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEE--EEeCCHHH--HH------HHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 45799999999999999999999998887 55544311 11 1111122111 21 3467777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 77 ~~~~~~g~id~li~-~ag~ 94 (253)
T PRK06172 77 QTIAAYGRLDYAFN-NAGI 94 (253)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 77665 5677777 5554
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.37 Score=40.14 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=28.1
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
+|+|.|++|-.|+.+++.+.+.|.+|+ +++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~--~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVR--GLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEE--EEeCC
Confidence 499999999999999999999898999 66543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.11 Score=43.14 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=47.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eE---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
.++|+|+|+ |++|+.+++.+.+.|.+|+ +.|....- .+ ..+....++ +++.. .++|+.+-...... +.
T Consensus 28 gk~v~I~G~-G~vG~~~A~~L~~~G~~Vv--v~D~~~~~~~~~~~~~g~~~v~~-~~l~~-~~~Dv~vp~A~~~~---I~ 99 (200)
T cd01075 28 GKTVAVQGL-GKVGYKLAEHLLEEGAKLI--VADINEEAVARAAELFGATVVAP-EEIYS-VDADVFAPCALGGV---IN 99 (200)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEcCCHHHHHHHHHHcCCEEEcc-hhhcc-ccCCEEEecccccc---cC
Confidence 367999999 9999999999999999999 44443210 00 113344433 44433 26777663322221 11
Q ss_pred HHHH-HcCCCEEEEeC
Q 030169 134 MEAM-EAELDLVVCIT 148 (182)
Q Consensus 134 ~eAi-e~GIk~VV~iT 148 (182)
++.+ +-+.+.|+.-+
T Consensus 100 ~~~~~~l~~~~v~~~A 115 (200)
T cd01075 100 DDTIPQLKAKAIAGAA 115 (200)
T ss_pred HHHHHHcCCCEEEECC
Confidence 2222 22567777633
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.45 Score=41.43 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=27.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.+||+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~ 38 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVH 38 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 56899999999999999999999999988
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.54 Score=38.45 Aligned_cols=84 Identities=15% Similarity=0.091 Sum_probs=54.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCcE-EEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KANA-SVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~Dv-aVdfVpp~av~~a~ 133 (182)
+.++++|.|++|..|+.+++.+.+.|.+|+ .++... . .. ..+.+-+++. +++. -.|...++.+.+++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~--~~~r~~-~-~~------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVL--VNGRNA-A-TL------EAAVAALRAAGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEE--EEeCCH-H-HH------HHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 356799999999999999999999999888 555532 1 01 1111111111 2222 34677788888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. .+..+|. ..|.
T Consensus 80 ~~~~~~~~~id~vi~-~ag~ 98 (256)
T PRK06124 80 ARIDAEHGRLDILVN-NVGA 98 (256)
T ss_pred HHHHHhcCCCCEEEE-CCCC
Confidence 888764 4666776 5564
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.73 Score=37.40 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--C-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~-DvaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ .++.... +...+..++.+ + -+..|+..++.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi--~~~r~~~----------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIV--GAGRSEP----------SETQQQVEALGRRFLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEcCchH----------HHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 46799999999999999999999998888 5554321 11222222111 2 23457778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|. ..|+
T Consensus 73 ~~~~~~~~~d~li~-~ag~ 90 (248)
T TIGR01832 73 SAVEEFGHIDILVN-NAGI 90 (248)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77664 4777777 5554
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.26 Score=40.00 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=29.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++++.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~--~~~r~~ 40 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVI--LVARHQ 40 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEE--EEeCCh
Confidence 5799999999999999999999999887 566544
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.62 Score=37.77 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=51.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ ....... . ..+++.++. ++. ...|+..++...++++
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~~vv-~~~~~~~-~----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGARVV-VNYHQSE-D----------AAEALADELGDRAIALQADVTDREQVQAMFA 72 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCeEE-EEcCCCH-H----------HHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 35799999999999999999999998888 3222211 1 111211111 222 2356778888888888
Q ss_pred HHHHc-C--CCEEEEeCCC
Q 030169 135 EAMEA-E--LDLVVCITEG 150 (182)
Q Consensus 135 eAie~-G--Ik~VV~iTeG 150 (182)
++.+. | +..+|. ..|
T Consensus 73 ~~~~~~g~~id~li~-~ag 90 (253)
T PRK08642 73 TATEHFGKPITTVVN-NAL 90 (253)
T ss_pred HHHHHhCCCCeEEEE-CCC
Confidence 77655 2 777776 444
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.61 Score=38.01 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=52.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
..+++|.|++|..|+.+++.+.+.|.+++ ..+.+.... . -...++.... .++. +-.|...++...+++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~~v~-i~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~ 77 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGALVA-IHYGRNKQA--A-----DETIREIESNGGKAFLIEADLNSIDGVKKLVEQ 77 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEcCCCHHH--H-----HHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHH
Confidence 35799999999999999999999998877 444443211 1 0111221110 0111 23466777777777776
Q ss_pred HHHc--------CCCEEEEeCCCC
Q 030169 136 AMEA--------ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--------GIk~VV~iTeG~ 151 (182)
..+. ++..++. +.|.
T Consensus 78 ~~~~~~~~~~~~~id~vi~-~ag~ 100 (254)
T PRK12746 78 LKNELQIRVGTSEIDILVN-NAGI 100 (254)
T ss_pred HHHHhccccCCCCccEEEE-CCCC
Confidence 6643 5777776 5554
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.47 Score=41.96 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-CCceEEeecc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVT 91 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVd 91 (182)
+.+||+|.|++|-.|+.+++.+.+. |.+|+ +++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~--~l~ 46 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVL--ALD 46 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEE--EEe
Confidence 3478999999999999999999987 47888 444
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.091 Score=41.61 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=54.9
Q ss_pred EEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeE--------------e-----------------cCcccccc
Q 030169 61 VICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTE--------------H-----------------LGLPVFNS 107 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~--------------i-----------------~GvPVy~S 107 (182)
|+|.|+||..|+...+.+.++. ++|+ |... +..-+. + .++.+|.-
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~-~Lsa-~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G 78 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVV-ALSA-GSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSG 78 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEE-EEEE-SSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEE-EEEc-CCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeC
Confidence 5788999999999999888765 8888 5333 221111 0 03445544
Q ss_pred ---HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 ---VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 ---v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+.|+.+..++|+++..+.-.+.......|+++|.++..+
T Consensus 79 ~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLA 120 (129)
T PF02670_consen 79 PEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALA 120 (129)
T ss_dssp HHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE-
T ss_pred hHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEe
Confidence 445444457888888888888888888888888776543
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.33 Score=41.98 Aligned_cols=83 Identities=20% Similarity=0.173 Sum_probs=54.5
Q ss_pred EEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCC-eEe----------cCccccccHHHHHhccCCcEEEEe---eC
Q 030169 62 ICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGG-TEH----------LGLPVFNSVAEAKAETKANASVIY---VP 125 (182)
Q Consensus 62 iVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G-~~i----------~GvPVy~Sv~ea~~~~~~DvaVdf---Vp 125 (182)
+|.|++|-.|+.+++.+++.| .+|.+....+.... ... .++-=+++++++++ ++|+++-. ++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~--g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE--GVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc--CCceEEEeCcccc
Confidence 488999999999999999998 66661122222111 001 13333445777777 78877765 22
Q ss_pred h--------------HHHHHHHHHHHHcCCCEEEE
Q 030169 126 P--------------PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 p--------------~av~~a~~eAie~GIk~VV~ 146 (182)
+ ..+..+++.|.++|++.+|.
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy 113 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY 113 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 24566888899999999876
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.28 Score=41.12 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=27.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
+.||+|+|+ |..|..+++.+...| .++. -+|+..
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg~i~--lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVGKLG--LVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEcCCE
Confidence 468999999 999999999999999 4554 566554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.46 Score=41.01 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=42.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-C-----------eE----ecCccccccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-G-----------TE----HLGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-G-----------~~----i~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
+||+|.|++|-.|+.+++.+.+.|.+.+ -+++.... + .. ..++-=..++.+++++..+|++|-
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSV-VNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeE-EEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999998886644 35543210 0 00 112222234566666556898887
Q ss_pred eeC
Q 030169 123 YVP 125 (182)
Q Consensus 123 fVp 125 (182)
+..
T Consensus 80 ~A~ 82 (352)
T PRK10084 80 LAA 82 (352)
T ss_pred CCc
Confidence 764
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.65 Score=40.06 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=26.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~ 34 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVH 34 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 46799999999999999999999998888
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.83 Score=37.66 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+++++|.|++|..|..+++.+.+.|.+++ .++..... ..+ . ++ -...|...+..+.++++++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~--~~~~~~~~--~~~-----------~--~~~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVV--NADIHGGD--GQH-----------E--NYQFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCccc--ccc-----------C--ceEEEEccCCCHHHHHHHHHHH
Confidence 46799999999999999999999998888 44433211 110 0 11 2345677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..+|. +.|+
T Consensus 72 ~~~~g~id~li~-~Ag~ 87 (266)
T PRK06171 72 IEKFGRIDGLVN-NAGI 87 (266)
T ss_pred HHHcCCCCEEEE-CCcc
Confidence 765 5677776 5554
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.51 Score=38.29 Aligned_cols=83 Identities=23% Similarity=0.226 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... . ..+.+.+.+. ++ -+..|...+..+.++..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVV--VADINAEG--A------ERVAKQIVADGGTAIAVQVDVSDPDSAKAMAD 75 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35799999999999999999999998888 55544311 1 1111211111 11 13456677777777777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..||. +.|+
T Consensus 76 ~~~~~~~~id~vi~-~ag~ 93 (250)
T PRK07774 76 ATVSAFGGIDYLVN-NAAI 93 (250)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 76655 4777777 6665
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.35 Score=42.05 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCe----------Ee----cCccccccHHHHHhccCCcEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGT----------EH----LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~----------~i----~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
.++|+|.|++|-.|+.+++.+.+.| .+|+ .++...... .+ .++-=..++.++++ ++|+++
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~--~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~--~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKII--IYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR--GVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEE--EEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh--cCCEEE
Confidence 4679999999999999999998765 5676 333221110 00 12222233555555 689888
Q ss_pred EeeCh------------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 122 IYVPP------------------PFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 122 dfVpp------------------~av~~a~~eAie~GIk~VV~iTeG 150 (182)
-+.-. ..+..+++.|.+.|++.+|.+++.
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~ 126 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD 126 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 75421 134567777888899888776653
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.27 Score=45.60 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=56.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE--------------ec---------------C--cccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE--------------HL---------------G--LPVF 105 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~--------------i~---------------G--vPVy 105 (182)
.||+|.|.||..|+...+.+.++ .++|+ |. .-+..-+. +. + ..||
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~-~L-aa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~ 79 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVV-AL-SAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVL 79 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEE-EE-EcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEE
Confidence 47999999999999999877754 38888 53 22221110 00 1 3344
Q ss_pred cc---HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 106 NS---VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 106 ~S---v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
.. +.++.+..++|+++..+.-.+......+|+++|.++..+
T Consensus 80 ~G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA 123 (389)
T TIGR00243 80 VGEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALA 123 (389)
T ss_pred ECHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe
Confidence 44 333333346788888888888888888888888776544
|
1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.73 Score=37.75 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--Cc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~D-vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... . ....+.+++.+ ++ ...|...++.+.++++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~--~~~r~~~~--~------~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVI--LNGRDPAK--L------AAAAESLKGQGLSAHALAFDVTDHDAVRAAID 79 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEE--EEeCCHHH--H------HHHHHHHHhcCceEEEEEccCCCHHHHHHHHH
Confidence 46799999999999999999999999988 45543211 1 11111122111 21 2347788888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|.
T Consensus 80 ~~~~~~~~~d~li~-~ag~ 97 (255)
T PRK07523 80 AFEAEIGPIDILVN-NAGM 97 (255)
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 87765 4666766 5554
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.37 Score=40.24 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+++ .++..... .. ...+++.. ...+ +..|...++.+.++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLV--LADVQQDA--LD-----RAVAELRA-QGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEE--EEeCChHH--HH-----HHHHHHHh-cCCeEEEEECCCCCHHHHHHHHH
Confidence 35799999999999999999999998887 44432211 00 11222221 1223 3456777888888887
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..|+. ..|+
T Consensus 76 ~~~~~~g~id~vi~-~Ag~ 93 (287)
T PRK06194 76 AALERFGAVHLLFN-NAGV 93 (287)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77655 5788877 5554
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.97 Score=41.32 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=55.5
Q ss_pred chhhhHHHHHhCCceEEeeccCCCC--Ce------EecCccccccHHHHHhccCCcEEEEeeChHHH-HHHHHHHHHcCC
Q 030169 71 GTFHTEQAIEYGTKMVVGGVTPKKG--GT------EHLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIMEAMEAEL 141 (182)
Q Consensus 71 G~~v~k~~~~~g~~IV~AgVdp~~~--G~------~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av-~~a~~eAie~GI 141 (182)
|+.++..+.+.|.+++ +.|+... .. ...|..+.+|..|+.+ ++|+++.++|-... .+++...+++-.
T Consensus 32 GspMArnLlkAGheV~--V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa--~ADVVIL~LPd~aaV~eVl~GLaa~L~ 107 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVV--LAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK--HGEIHVLFTPFGKGTFSIARTIIEHVP 107 (341)
T ss_pred HHHHHHHHHHCCCEEE--EEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh--CCCEEEEecCCHHHHHHHHHHHHhcCC
Confidence 4566778888898888 5554432 11 1248899999999998 79999999998874 466554444311
Q ss_pred --CEEEEeCCCCCHHHHHHHHH
Q 030169 142 --DLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 142 --k~VV~iTeG~~~eD~~~l~~ 161 (182)
+.||- ++=++.+..-++.+
T Consensus 108 ~GaIVID-~STIsP~t~~~~~e 128 (341)
T TIGR01724 108 ENAVICN-TCTVSPVVLYYSLE 128 (341)
T ss_pred CCCEEEE-CCCCCHHHHHHHHH
Confidence 23444 55555555555444
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.67 Score=40.05 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=42.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-Ce-------------E--ecCccccccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-GT-------------E--HLGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-G~-------------~--i~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
+||+|.|++|-.|+.+++.+.+.|.+++ ..++.... +. + ..++.-..++++++++.++|.+|-
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAV-VVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEE-EEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 4799999999999999999999887655 44443210 00 0 012222234566666556898887
Q ss_pred ee
Q 030169 123 YV 124 (182)
Q Consensus 123 fV 124 (182)
+.
T Consensus 81 ~A 82 (355)
T PRK10217 81 LA 82 (355)
T ss_pred CC
Confidence 75
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.34 Score=43.50 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=28.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
..||+|+|+ |..|+.+++.+...|. +|. -||...
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~--lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVGKVT--IVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCeEE--EEeCCc
Confidence 477999999 9999999999999994 555 677653
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.64 Score=38.03 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=55.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCc-eEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~-IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+.+++|.|++|..|+.+++.+.+.|.+ |+ .++..... . + ...+++ .+...+ +.+|+..++.+.+++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~--~~~r~~~~--~---~--~~~~~l-~~~~~~~~~~~~D~~~~~~~~~~~ 75 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGAAGLV--ICGRNAEK--G---E--AQAAEL-EALGAKAVFVQADLSDVEDCRRVV 75 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCCeEE--EEcCCHHH--H---H--HHHHHH-HhcCCeEEEEEccCCCHHHHHHHH
Confidence 467999999999999999999999987 66 55543211 1 1 112222 211222 346788888888888
Q ss_pred HHHHHc--CCCEEEEeCCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~~ 152 (182)
+.+.+. ++..++. ..|..
T Consensus 76 ~~~~~~~g~id~li~-~ag~~ 95 (260)
T PRK06198 76 AAADEAFGRLDALVN-AAGLT 95 (260)
T ss_pred HHHHHHhCCCCEEEE-CCCcC
Confidence 777654 6778877 66653
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.74 Score=40.60 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=69.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe---Ee-----cCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT---EH-----LGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~---~i-----~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.++|+|.|.| ..++.+++.+..++ ..++ .-... .+++ +. .|.==..-+.+.+++.++|++||.++|-+
T Consensus 2 ~~~ilvlGGT-~Dar~la~~L~~~~~~~~~-ss~t~-~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyA 78 (257)
T COG2099 2 MMRILLLGGT-SDARALAKKLAAAPVDIIL-SSLTG-YGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYA 78 (257)
T ss_pred CceEEEEecc-HHHHHHHHHhhccCccEEE-EEccc-ccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHH
Confidence 5789999974 47888899888876 3333 21111 1111 11 12111222777788889999999999988
Q ss_pred HH---HHHHHHHHcCCCEEEEeCCC--------CCHHHHHHHHHHhccc
Q 030169 129 AA---AAIMEAMEAELDLVVCITEG--------IPQHDMVINFTRVNIL 166 (182)
Q Consensus 129 v~---~a~~eAie~GIk~VV~iTeG--------~~~eD~~~l~~~ak~i 166 (182)
+. .+++-|-+.||+.+.--=.+ +.++|+.+..+++++.
T Consensus 79 a~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~ 127 (257)
T COG2099 79 ARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQL 127 (257)
T ss_pred HHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhcc
Confidence 76 77788889999997432222 3457778888877765
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.45 Score=41.32 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~ 33 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVR 33 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEE
Confidence 45799999999999999999999998888
|
|
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.11 Score=47.25 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=62.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCCe----------------E---------ec--Ccccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGGT----------------E---------HL--GLPVFNS- 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G~----------------~---------i~--GvPVy~S- 107 (182)
.||.|-|| ||.|+.+.+.+.+. +++|| |--|+..... + ++ .++|+..
T Consensus 2 ~ki~INGf-GRIGR~~~R~~~~~~~~~~~vv-aind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 2 IRVAINGF-GRIGRNFLRCWLGRENSQLELV-AINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred eEEEEEcc-ChHHHHHHHHHHhccCCCeEEE-EecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 58999999 99999999987654 58899 6444321100 0 11 3556652
Q ss_pred -HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 -VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 -v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++++ .+.++|+++..+......+-+..++++|.+.|++
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~i 120 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI 120 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEe
Confidence 35554 3458999999999999999999999999999887
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.91 Score=38.78 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeec
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV 90 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV 90 (182)
...+|+|.|++|-.|+.+++.+.+.|.+|+ +.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~-~~~ 36 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVK-ATV 36 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEE
Confidence 456899999999999999999999998888 544
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.27 Score=41.62 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=51.2
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCccc--cccHHHHHhc-------cCCcEEEEee----
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGLPV--FNSVAEAKAE-------TKANASVIYV---- 124 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~GvPV--y~Sv~ea~~~-------~~~DvaVdfV---- 124 (182)
|+|.|++|-.|+.+++.+.+.|.+++ +.++....+... ..+.+ +.+.++..++ .++|+++-+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~ 80 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDI-LVVDNLKDGTKFVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGACSS 80 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceE-EEecCCCcchHHHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECceecC
Confidence 78999999999999999999897777 566554322111 11111 1122222221 1689887752
Q ss_pred C------------hHHHHHHHHHHHHcCCCEEEE
Q 030169 125 P------------PPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 125 p------------p~av~~a~~eAie~GIk~VV~ 146 (182)
+ -..+..+++.|.+++++.|..
T Consensus 81 ~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~ 114 (308)
T PRK11150 81 TTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYA 114 (308)
T ss_pred CcCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 1 112345777888889975544
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.38 Score=41.07 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCcE---EEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KANA---SVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~Dv---aVdfVpp~av~~a 132 (182)
..+++|.|++|..|..+++.+.+.|.+++ .++.... .++++.++. ..++ ..|...++.+.++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~-----------~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLA--LVDLEEA-----------ELAALAAELGGDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhcCCCcEEEEEecCCCHHHHHHH
Confidence 35699999999999999999999998887 4443221 122221111 2223 2688899999999
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
+++..+. .+..+|+ ..|+
T Consensus 76 ~~~~~~~~g~id~vI~-nAG~ 95 (296)
T PRK05872 76 AEEAVERFGGIDVVVA-NAGI 95 (296)
T ss_pred HHHHHHHcCCCCEEEE-CCCc
Confidence 8888764 5788887 7665
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.94 Score=37.07 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...+++.+. ..+ ...|...++.+.+++.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vv--l~~r~~~~--~~-----~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEII--INDITAER--AE-----LAVAKLRQE-GIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEE--EEcCCHHH--HH-----HHHHHHHhc-CCeEEEEecCCCCHHHHHHHHH
Confidence 45699999999999999999999998888 33332210 00 011222111 112 2356778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 79 ~~~~~~~~id~vi~-~ag~ 96 (254)
T PRK08085 79 HIEKDIGPIDVLIN-NAGI 96 (254)
T ss_pred HHHHhcCCCCEEEE-CCCc
Confidence 88765 5777877 6664
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.17 Score=45.89 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=69.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
..++|-.+|. |.||+..++.++..|.++.|=.++..+--. +..|--|++|..|+.+ ..|+++..+|-+. |.++..
T Consensus 34 s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~v~~ 110 (327)
T KOG0409|consen 34 SKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAE--DSDVVITMVPNPKDVKDVLL 110 (327)
T ss_pred ccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHh--hcCEEEEEcCChHhhHHHhc
Confidence 4688999998 999999999999999888822344433210 1248999999999999 8999988887554 444433
Q ss_pred H------HHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 E------AMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 e------Aie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
. .+..|-+..|= .+=+.+.-..+|.+.++.
T Consensus 111 g~~Gvl~g~~~g~~~~vD-mSTidp~~s~ei~~~i~~ 146 (327)
T KOG0409|consen 111 GKSGVLSGIRPGKKATVD-MSTIDPDTSLEIAKAISN 146 (327)
T ss_pred CCCcceeeccCCCceEEe-ccccCHHHHHHHHHHHHh
Confidence 2 11122222222 344666666777666543
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.21 Score=45.88 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=51.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--------EecCcccccc--HHHHHhccCCcEEEEeeCh-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--------EHLGLPVFNS--VAEAKAETKANASVIYVPP- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--------~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp- 126 (182)
..||.|+|. |+.|..+++.+.+.|.++. +.|.+.... +-.|+.++.. ..+.++ ++|++|.. |.
T Consensus 14 ~~~i~v~G~-G~sG~a~a~~L~~~G~~V~--~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~--~~dlVV~S-pgi 87 (458)
T PRK01710 14 NKKVAVVGI-GVSNIPLIKFLVKLGAKVT--AFDKKSEEELGEVSNELKELGVKLVLGENYLDKLD--GFDVIFKT-PSM 87 (458)
T ss_pred CCeEEEEcc-cHHHHHHHHHHHHCCCEEE--EECCCCCccchHHHHHHHhCCCEEEeCCCChHHhc--cCCEEEEC-CCC
Confidence 368999999 9999999999999998877 666543211 0125655422 223344 57865543 31
Q ss_pred HHHHHHHHHHHHcCCCEE
Q 030169 127 PFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~V 144 (182)
......+..|.+.||+.+
T Consensus 88 ~~~~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 88 RIDSPELVKAKEEGAYIT 105 (458)
T ss_pred CCCchHHHHHHHcCCcEE
Confidence 222356677777787753
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.3 Score=36.43 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
.++++|.|++|..|+.+++.+.+.|.+++ .. ..... +..+++.+. ++ -+..|...++.+.++++++
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~-~~-~~~~~----------~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~ 73 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVA-VL-YNSAE----------NEAKELREK-GVFTIKCDVGNRDQVKKSKEVV 73 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE-EE-eCCcH----------HHHHHHHhC-CCeEEEecCCCHHHHHHHHHHH
Confidence 46799999999999999999999998887 32 22110 011222211 22 2456788899999998888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 74 ~~~~~~id~li~-~ag~ 89 (255)
T PRK06463 74 EKEFGRVDVLVN-NAGI 89 (255)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 775 5777776 5554
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.55 Score=40.75 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=51.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCC-eE---ecCccccc-c-------HHHHHhccCCcEEEEe--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGG-TE---HLGLPVFN-S-------VAEAKAETKANASVIY-- 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G-~~---i~GvPVy~-S-------v~ea~~~~~~DvaVdf-- 123 (182)
++|+|.|++|-.|+.+++.+++. |.+|+ +++..... .. ..++.++. + +.++.+ ++|+++-+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~--~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~d~ViH~aa 77 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVY--GMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVK--KCDVILPLVA 77 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEE--EEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHc--CCCEEEECcc
Confidence 57999999999999999999876 57888 55532210 00 11233322 2 223334 78998854
Q ss_pred --eChH--------------HHHHHHHHHHHcCCCEEEE
Q 030169 124 --VPPP--------------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 124 --Vpp~--------------av~~a~~eAie~GIk~VV~ 146 (182)
.|+. .+..+++.|.+.+.+.|.+
T Consensus 78 ~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~ 116 (347)
T PRK11908 78 IATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFP 116 (347)
T ss_pred cCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3321 2345677777788555544
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.16 Score=40.71 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=52.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccc----ccHHHH-HhccCCcEEEEeeChHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVF----NSVAEA-KAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy----~Sv~ea-~~~~~~DvaVdfVpp~av~~ 131 (182)
...+|+|+|+ |+.|...++.++++|.+|+ -|+|.... ++..++.. ..+++. ++ +.|+++..+.-..+..
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~--VIsp~~~~-~l~~l~~i~~~~~~~~~~dl~--~a~lViaaT~d~e~N~ 85 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVT--VVSPEICK-EMKELPYITWKQKTFSNDDIK--DAHLIYAATNQHAVNM 85 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE--EEcCccCH-HHHhccCcEEEecccChhcCC--CceEEEECCCCHHHHH
Confidence 4578999999 9999999999999998887 66776533 22222211 112221 22 6788888888877776
Q ss_pred HHHHHHHcC
Q 030169 132 AIMEAMEAE 140 (182)
Q Consensus 132 a~~eAie~G 140 (182)
.+.++.+.+
T Consensus 86 ~i~~~a~~~ 94 (157)
T PRK06719 86 MVKQAAHDF 94 (157)
T ss_pred HHHHHHHHC
Confidence 665555544
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.61 Score=40.91 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
...|+|.|++|..|+.+++.+.+.|.+|+ .++..... . ..+.+-+++...+ +..|...++.+.++++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vv--l~~R~~~~--l------~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVV--LLARGEEG--L------EALAAEIRAAGGEALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 35699999999999999999999998888 44443211 0 1111111211222 3468888999999988
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 78 ~~~~~~g~iD~lIn-nAg~ 95 (334)
T PRK07109 78 RAEEELGPIDTWVN-NAMV 95 (334)
T ss_pred HHHHHCCCCCEEEE-CCCc
Confidence 88765 5787877 6664
|
|
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.13 Score=47.95 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=62.4
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeE-------------------e--------c--Cccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTE-------------------H--------L--GLPVFN-- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~-------------------i--------~--GvPVy~-- 106 (182)
.||.|.|| |+.|+.+.+.+.+ .+++|| +--||....+. + + .+.|+.
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vv-aINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSRDDIEVV-AVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhcCCcEEE-EecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 49999999 9999999998875 679999 75555432211 0 1 244442
Q ss_pred cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++.. ++.++|+++..+......+.+...+++|.+.||+
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVI 204 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVI 204 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEE
Confidence 344443 3347999999999888888899999999988877
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.1 Score=36.19 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=49.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++.... ..++..+..+++ +..|+..++.+.++.++
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~- 74 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVV--AAARNAA-----------ALDRLAGETGCEPLRLDVGDDAAIRAALAA- 74 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhCCeEEEecCCCHHHHHHHHHH-
Confidence 35799999999999999999999998888 5554321 122222221222 33567777665555544
Q ss_pred HHcCCCEEEEeCCCC
Q 030169 137 MEAELDLVVCITEGI 151 (182)
Q Consensus 137 ie~GIk~VV~iTeG~ 151 (182)
..++..||. ..|.
T Consensus 75 -~~~~d~vi~-~ag~ 87 (245)
T PRK07060 75 -AGAFDGLVN-CAGI 87 (245)
T ss_pred -hCCCCEEEE-CCCC
Confidence 235777777 5554
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.82 Score=37.49 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+|+ .++..... . ..+.+-+++. ++ -+..|+..++.+.++++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVA--IAARHLDA--L------EKLADEIGTSGGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEcCCHHH--H------HHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 45699999999999999999999999988 34332211 1 1111111111 11 23467788888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~g~id~lv~-~ag~ 96 (253)
T PRK05867 79 QVTAELGGIDIAVC-NAGI 96 (253)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87765 6787777 5554
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.52 Score=38.21 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=25.6
Q ss_pred eEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
||+|+|+ |-+|..+++.+...|. ++. -+|+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~--lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLK--LVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEE--EEeCCE
Confidence 5899999 9999999999998884 355 555544
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.35 Score=43.40 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=68.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--eEecCccccccHHHHHhccCCcEEEEeeChHHHH-HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA-AAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~-~a~~ 134 (182)
.+++.|+|. |+.|+.+++.+..+|++|+ .-++.... .+..+..-++ ++|+.+ +.|++++..|...-- .++.
T Consensus 146 gktvGIiG~-GrIG~avA~r~~~Fgm~v~--y~~~~~~~~~~~~~~~~y~~-l~ell~--~sDii~l~~Plt~~T~hLin 219 (324)
T COG1052 146 GKTLGIIGL-GRIGQAVARRLKGFGMKVL--YYDRSPNPEAEKELGARYVD-LDELLA--ESDIISLHCPLTPETRHLIN 219 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCCEEE--EECCCCChHHHhhcCceecc-HHHHHH--hCCEEEEeCCCChHHhhhcC
Confidence 567999998 9999999999999999998 66665421 1122344444 999999 899999999976544 3333
Q ss_pred HHHHcCCC--E-EEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 135 EAMEAELD--L-VVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 135 eAie~GIk--~-VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
+..=+.+| . +|+ |.-=+.-|...|.++-++--|+
T Consensus 220 ~~~l~~mk~ga~lVN-taRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 220 AEELAKMKPGAILVN-TARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred HHHHHhCCCCeEEEE-CCCccccCHHHHHHHHHhCCcc
Confidence 33322333 2 566 4444555555555555544443
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.18 Score=42.80 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=28.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeecc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd 91 (182)
..||+|+|+ |+.|+.+++.+.+.|.+|+ +-.|
T Consensus 31 ~~~v~I~G~-G~VG~~~a~~L~~~g~~vv-~v~D 62 (227)
T cd01076 31 GARVAIQGF-GNVGSHAARFLHEAGAKVV-AVSD 62 (227)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEEC
Confidence 588999998 9999999999999999999 5444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.29 Score=46.40 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=57.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI-ME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~-~e 135 (182)
..+|+|+|+ |+.|+.+++.+..+|.+|++...+|.+.-+ ...|+.+ .+++++.+ .+|+++..+.. ..++ .+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~--~ADIVI~atGt---~~iI~~e 326 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVE--TADIFVTATGN---KDIITLE 326 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHh--cCCEEEECCCc---ccccCHH
Confidence 457999998 999999999999999998734557655311 1135543 36888887 79999988643 3333 35
Q ss_pred HHHc-CCCEEEEeCCCCC
Q 030169 136 AMEA-ELDLVVCITEGIP 152 (182)
Q Consensus 136 Aie~-GIk~VV~iTeG~~ 152 (182)
.++. +-..+++-+..+.
T Consensus 327 ~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 327 HMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HHhccCCCcEEEEcCCCc
Confidence 5544 3333433244443
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.67 Score=41.05 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=29.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG 96 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G 96 (182)
+.+|+|+|+ |-.|.++++++...|.+=+ .-+|+....
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~i-tI~D~d~ve 55 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVKSV-TLHDTKPCS 55 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCCeE-EEEcCCccc
Confidence 578999999 8999999999999995433 366776544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.3 Score=36.04 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=48.1
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAie 138 (182)
+|+|.|++|..|+.+++.+.+.|.+++ .++..... ++++.+ .+++ +..|...++...+.++.+.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~--~~~r~~~~-----------~~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~ 69 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVL--AACRKPDD-----------VARMNS-LGFTGILLDLDDPESVERAADEVIA 69 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH-----------hHHHHh-CCCeEEEeecCCHHHHHHHHHHHHH
Confidence 599999999999999999999898887 33332211 112111 1222 33466677777777666654
Q ss_pred ---cCCCEEEEeCCCC
Q 030169 139 ---AELDLVVCITEGI 151 (182)
Q Consensus 139 ---~GIk~VV~iTeG~ 151 (182)
.++..++. ..|+
T Consensus 70 ~~~~~~~~ii~-~ag~ 84 (256)
T PRK08017 70 LTDNRLYGLFN-NAGF 84 (256)
T ss_pred hcCCCCeEEEE-CCCC
Confidence 24555555 5554
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.65 Score=38.58 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=50.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~eA 136 (182)
+|+|.|++|..|+.+++.+.+.|.+++ .++..... .. ...+++.. .+.+ +..|+..++.+.+++++.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~--~~~r~~~~--~~-----~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLA--LADVNEEG--GE-----ETLKLLRE-AGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHh-cCCceEEEEccCCCHHHHHHHHHHH
Confidence 689999999999999999999998887 33332211 00 00111111 1112 345677777777777666
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 72 ~~~~~~id~lI~-~ag~ 87 (270)
T PRK05650 72 EEKWGGIDVIVN-NAGV 87 (270)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 554 5777777 6554
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.23 Score=45.00 Aligned_cols=83 Identities=8% Similarity=-0.148 Sum_probs=59.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCc---eEEeeccC-CCCCeEe----cCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTK---MVVGGVTP-KKGGTEH----LGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~---IV~AgVdp-~~~G~~i----~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+|+| |+||--|+.+.+.+.+.++. +. ---.+ ...|+.+ ..++|-.--++..+ ++|+++. .+.+...
T Consensus 4 ~~iAi-GATg~VG~~~l~~Leer~fpv~~l~-l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~--~vDia~f-ag~~~s~ 78 (322)
T PRK06901 4 LNIAI-AAEFELSEKLLEALEQSDLEIEQIS-IVEIEPFGEEQGIRFNNKAVEQIAPEEVEWA--DFNYVFF-AGKMAQA 78 (322)
T ss_pred ceEEE-ecCcHHHHHHHHHHHhcCCchhhee-ecccccccCCCEEEECCEEEEEEECCccCcc--cCCEEEE-cCHHHHH
Confidence 57999 99999999999999988843 22 11222 4445443 14555544444444 7999998 9999999
Q ss_pred HHHHHHHHcCCCEEEE
Q 030169 131 AAIMEAMEAELDLVVC 146 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~ 146 (182)
+.+..+.++|..+|=+
T Consensus 79 ~~ap~a~~aG~~VIDn 94 (322)
T PRK06901 79 EHLAQAAEAGCIVIDL 94 (322)
T ss_pred HHHHHHHHCCCEEEEC
Confidence 9999999999888754
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.76 Score=36.99 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=51.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--CcE-EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--ANA-SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~Dv-aVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|..+++.+.+.|.+|+ .++..... . ....+.+.+.. +++ ..|...++.+.+.++
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~--~~~r~~~~--~------~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVI--VVDICGDD--A------AATAELVEAAGGKARARQVDVRDRAALKAAVA 75 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 45799999999999999999999998888 55543211 0 01111111111 222 235667788888777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. .+..|++ ..|.
T Consensus 76 ~~~~~~~~~d~vi~-~ag~ 93 (251)
T PRK12826 76 AGVEDFGRLDILVA-NAGI 93 (251)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 76654 5777777 4433
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.44 Score=37.99 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=55.4
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------e--cCccccccHHHHHhccCCcEEEEeeChH---
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------H--LGLPVFNSVAEAKAETKANASVIYVPPP--- 127 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------i--~GvPVy~Sv~ea~~~~~~DvaVdfVpp~--- 127 (182)
|+|.|++|-.|+.+++.+++.|.+++ +-......... . .++-=-..++++++..++|+++.+.-..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~ 79 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVI-VLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNP 79 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEE-EEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccc-cccccccccccccccceEEEEEeeccccccccccccccCceEEEEeecccccc
Confidence 78999999999999999999998877 33322221100 0 1122122367777766789999886542
Q ss_pred ---------------HHHHHHHHHHHcCCCEEEEeC
Q 030169 128 ---------------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 128 ---------------av~~a~~eAie~GIk~VV~iT 148 (182)
....+++.|.+++++.++.++
T Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~s 115 (236)
T PF01370_consen 80 ESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLS 115 (236)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 123455667788985555434
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.89 Score=39.03 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=64.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC--CceEEe-----eccCCCCCeEecCcc-ccccHHHHHhc-cCCcEEEEe-----
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVVG-----GVTPKKGGTEHLGLP-VFNSVAEAKAE-TKANASVIY----- 123 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g--~~IV~A-----gVdp~~~G~~i~GvP-Vy~Sv~ea~~~-~~~DvaVdf----- 123 (182)
++.+.|.|+||--|+.+.+.+.|.+ -+++ + .+||.... .+.-.. =|+.+++.... ..+|+....
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~-~i~RR~~~d~at~k-~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTR 95 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVY-AILRRELPDPATDK-VVAQVEVDFSKLSQLATNEQGPDVLFCALGTTR 95 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhcccceeEE-EEEeccCCCccccc-eeeeEEechHHHHHHHhhhcCCceEEEeecccc
Confidence 5779999999999999999999877 4555 4 35665532 333222 24446665443 478988754
Q ss_pred ----------eChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 124 ----------VPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 124 ----------Vpp~av~~a~~eAie~GIk~VV~iT 148 (182)
|.++.+.+.++.|-+.|++.++-++
T Consensus 96 gkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvS 130 (238)
T KOG4039|consen 96 GKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVS 130 (238)
T ss_pred cccccCceEeechHHHHHHHHHHHhCCCeEEEEEe
Confidence 6788999999999999999987654
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.5 Score=44.43 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=28.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP 92 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp 92 (182)
+..||+|||+ |+.|+..++.+.+.|.+|| +|.+
T Consensus 227 ~g~rVaVQGf-GNVG~~aA~~L~e~GAkVV--aVSD 259 (444)
T PRK14031 227 KGKVCLVSGS-GNVAQYTAEKVLELGGKVV--TMSD 259 (444)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEEC
Confidence 4578999999 9999999999999999999 4444
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.85 Score=38.92 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=56.4
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe------------E----ecCccccccHHHHHhccCCcE
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT------------E----HLGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~------------~----i~GvPVy~Sv~ea~~~~~~Dv 119 (182)
+..++|+|.|++|-.|+.+++.+.+.|.+|+....++..... . ..++--..+++++.+ ++|+
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~ 80 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID--GCET 80 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc--CCCE
Confidence 445789999999999999999999999888722345432110 0 012333334556665 6888
Q ss_pred EEEeeCh----------HH--------HHHHHHHHHHc-CCCEEEEeCC
Q 030169 120 SVIYVPP----------PF--------AAAAIMEAMEA-ELDLVVCITE 149 (182)
Q Consensus 120 aVdfVpp----------~a--------v~~a~~eAie~-GIk~VV~iTe 149 (182)
++-+... .. +..+++.|.+. +++.||.+++
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS 129 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSS 129 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 8776631 11 23445555554 5666666554
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.31 Score=39.16 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=52.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc--cCCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~--~~~D-vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|.+|+.+++.+.+.|.+++ ..++..... . ..+.+.... .++. ...|+..++.+.+++++
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~-~~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVV-IAYDINEEA--A------QELLEEIKEEGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEcCCCHHH--H------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4799999999999999999998898888 332433211 0 011111111 1222 23577778888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..||. ..|.
T Consensus 77 ~~~~~~~id~vi~-~ag~ 93 (247)
T PRK05565 77 IVEKFGKIDILVN-NAGI 93 (247)
T ss_pred HHHHhCCCCEEEE-CCCc
Confidence 7664 6888877 5554
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.74 Score=37.03 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=52.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccH-HHHHhccCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSV-AEAKAETKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv-~ea~~~~~~D-vaVdfVpp~av~~a~~e 135 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ +++..... .+ .+ ++..+...+. +-.|+..++.+.+++++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~--~~~r~~~~-----~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVC--INSRNENK-----LK---RMKKTLSKYGNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-----HH---HHHHHHHhcCCeEEEECCCCCHHHHHHHHHH
Confidence 35799999999999999999999999888 55554311 11 11 1111101121 23466777888887777
Q ss_pred HHH--cCCCEEEEeCCC
Q 030169 136 AME--AELDLVVCITEG 150 (182)
Q Consensus 136 Aie--~GIk~VV~iTeG 150 (182)
+.. .++..++. +.|
T Consensus 75 ~~~~~~~id~ii~-~ag 90 (238)
T PRK05786 75 AAKVLNAIDGLVV-TVG 90 (238)
T ss_pred HHHHhCCCCEEEE-cCC
Confidence 654 35777776 444
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.1 Score=36.82 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D---vaVdfVpp~av~~a~ 133 (182)
...++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+.. +.+ +..|...++.+.+++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVA--ICGRDEER--LA-----SAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEE--EEeCCHHH--HH-----HHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 35699999999999999999999999888 45443311 10 0112222211 112 456888999999988
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~~g~id~li~-~Ag~ 97 (265)
T PRK07062 79 AAVEARFGGVDMLVN-NAGQ 97 (265)
T ss_pred HHHHHhcCCCCEEEE-CCCC
Confidence 888764 5777777 6664
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.3 Score=36.56 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCC-cEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~-DvaVdfVpp~av~~a~~eA 136 (182)
..++|.|++|..|+.+++.+.+.|.+++ +++..... ...+++.+. .++ -+-.|...++.+.++++++
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv--~~~~~~~~---------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 79 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIV--GINIVEPT---------ETIEQVTALGRRFLSLTADLRKIDGIPALLERA 79 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE--EecCcchH---------HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 5689999999999999999999999988 55543211 111221110 011 2345667788888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 80 ~~~~~~~D~li~-~Ag~ 95 (253)
T PRK08993 80 VAEFGHIDILVN-NAGL 95 (253)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 766 4667776 6554
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.6 Score=39.20 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=50.9
Q ss_pred EEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEec---Ccccccc------HHHHHhc--cCCcEEEEeeCh--
Q 030169 61 VICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEHL---GLPVFNS------VAEAKAE--TKANASVIYVPP-- 126 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i~---GvPVy~S------v~ea~~~--~~~DvaVdfVpp-- 126 (182)
|+|.|++|-.|+.+++.+.+.|. +++ +++......... +..+..+ ++.+.++ .++|+++-+...
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~ 78 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDIL--VVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSD 78 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEE--EEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccC
Confidence 68999999999999999999896 566 554332221111 1112222 2222221 379999876632
Q ss_pred --------------HHHHHHHHHHHHcCCCEEEE
Q 030169 127 --------------PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 127 --------------~av~~a~~eAie~GIk~VV~ 146 (182)
..+..+++.|.+++++.|..
T Consensus 79 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 112 (314)
T TIGR02197 79 TTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYA 112 (314)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 22345677788888875554
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.092 Score=47.01 Aligned_cols=73 Identities=25% Similarity=0.264 Sum_probs=48.4
Q ss_pred ccCCCCCeEe-------cCccccccHHHHHhccCCcEEEEeeChH------HHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030169 90 VTPKKGGTEH-------LGLPVFNSVAEAKAETKANASVIYVPPP------FAAAAIMEAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 90 Vdp~~~G~~i-------~GvPVy~Sv~ea~~~~~~DvaVdfVpp~------av~~a~~eAie~GIk~VV~iTeG~~~eD~ 156 (182)
+|+...|++. .|+|+|.+++++. .++|+.|+-+-|. .-.+.+.+|+++|...|-+ =|....|.
T Consensus 1 ID~~~aG~~a~e~~~~~~~iPi~~~~~~a~--~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsG--LH~~L~dd 76 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGGKRGIPIVASLEEAA--AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSG--LHDFLSDD 76 (301)
T ss_dssp E-TTTTTSBHHHCCSSSS--BEESSHHHHH--CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE---SSS-HCCH
T ss_pred CCcccCCCcHHHhcCCCCCCCccCCHHHHh--cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEec--ChhhhccC
Confidence 3555666554 6999999999993 4899999987543 3458999999999988776 44577778
Q ss_pred HHHHHHhccc
Q 030169 157 VINFTRVNIL 166 (182)
Q Consensus 157 ~~l~~~ak~i 166 (182)
.+|.++|++-
T Consensus 77 pel~~~A~~~ 86 (301)
T PF07755_consen 77 PELAAAAKKN 86 (301)
T ss_dssp HHHHCCHHCC
T ss_pred HHHHHHHHHc
Confidence 8888888763
|
The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A. |
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.92 Score=37.49 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|+++..|+.+++.+.+.|.+++ .++.... +..++..++...+ +.+|...++.+.++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv--~~~~~~~----------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIV--GVGVAEA----------PETQAQVEALGRKFHFITADLIQQKDIDSIVS 75 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EecCchH----------HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH
Confidence 46789999999999999999999999988 4443221 0112222222222 3568889999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 76 ~~~~~~g~iD~lv~-~ag~ 93 (251)
T PRK12481 76 QAVEVMGHIDILIN-NAGI 93 (251)
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 88765 5777877 6665
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.61 Score=38.39 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--Cc-EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~D-vaVdfVpp~av~~a~ 133 (182)
+..+|+|.|++|..|..+++.+.+.|.+++ .++..... ..+.+...+.. +. +..|...++.+.+++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~--~~~~~~~~---------~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 82 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADII--ITTHGTNW---------DETRRLIEKEGRKVTFVQVDLTKPESAEKVV 82 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCcHH---------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 346799999999999999999999998887 34332211 11222222111 21 345677788888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
++..+. ++..+|. ..|.
T Consensus 83 ~~~~~~~g~id~li~-~ag~ 101 (258)
T PRK06935 83 KEALEEFGKIDILVN-NAGT 101 (258)
T ss_pred HHHHHHcCCCCEEEE-CCCC
Confidence 888766 5788887 6554
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.34 Score=41.46 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE------------e---------------c-C--ccccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE------------H---------------L-G--LPVFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~------------i---------------~-G--vPVy~ 106 (182)
+.+|+|+|+ |..|+.+++.+...| .++. -+|+...... + + . +-.++
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~--LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGVGKLT--LIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCEEE--EECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 468999999 999999999999988 4555 5554432211 0 0 1 11111
Q ss_pred ------cHHHHHhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 107 ------SVAEAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp-~av~~a~~eAie~GIk~VV~iTeG 150 (182)
+..+... .++|++|+.+-. ..-..+.+.|.++++|.|.+.+.|
T Consensus 88 ~~i~~~~~~~l~~-~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 88 EFLTPDNSEDLLG-GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred eecCHhHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 2333332 157888887543 333456777778888888776655
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.8 Score=37.86 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+|+ .++.... .++++.+.. ++. +-.|...++.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~-----------~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVA--VLDKSAA-----------GLQELEAAHGDAVVGVEGDVRSLDDHKEAVA 71 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHhhcCCceEEEEeccCCHHHHHHHHH
Confidence 46799999999999999999999999988 4443321 112222211 121 3456777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 72 ~~~~~~g~id~li~-~Ag~ 89 (262)
T TIGR03325 72 RCVAAFGKIDCLIP-NAGI 89 (262)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87764 5777777 6564
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.76 Score=41.18 Aligned_cols=100 Identities=15% Similarity=0.041 Sum_probs=62.7
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCC-CCeEec-------Cccccc--c---HHHHHhccCCcE
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKK-GGTEHL-------GLPVFN--S---VAEAKAETKANA 119 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~-~G~~i~-------GvPVy~--S---v~ea~~~~~~Dv 119 (182)
+++..||.|+|+.|+.|+.++..+...+ -+++ .+|..+ .| +.. ...+.. + ..++++ ++|+
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elv--L~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l~--gaDv 79 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELS--LYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKALR--GADL 79 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEE--EEecCCCcc-cccchhhcCcCceEEEecCCCchHHHhC--CCCE
Confidence 4567799999999999999988777444 4555 555432 23 111 133432 1 245666 7999
Q ss_pred EEEeeChH----------------HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 120 SVIYVPPP----------------FAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 120 aVdfVpp~----------------av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
+|+..-.. .+.+++..+.++|++.+|++++ -|..-+..+.
T Consensus 80 VVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~S-NPvdv~~~~~ 135 (321)
T PTZ00325 80 VLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVS-NPVNSTVPIA 135 (321)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CcHHHHHHHH
Confidence 99765431 4456667777889998877443 4444444443
|
|
| >COG1810 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.5 Score=37.91 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=71.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeEecCcccccc-HHHHHhc-cCCcEEEEe-eChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTEHLGLPVFNS-VAEAKAE-TKANASVIY-VPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~i~GvPVy~S-v~ea~~~-~~~DvaVdf-Vpp~av~~a~ 133 (182)
+||+|+.- |..|...+++++..+ .+++ +-..+ . + .+|.|=+ .++.+.. .++|++|-+ .+|+..+.+.
T Consensus 2 mki~vlt~-g~yG~R~~~nl~~~~f~~~~v-~v~~~-P-e----~~~~fie~P~~~Lp~~~e~Di~va~~lHPDl~~~L~ 73 (224)
T COG1810 2 MKILVLTD-GEYGKRAVNNLACKGFKNQFV-AVKEY-P-E----ELPDFIEEPEDLLPKLPEADIVVAYGLHPDLLLALP 73 (224)
T ss_pred cEEEEEee-ccchHHHHHhHhhhccccceE-EEEec-c-c----cccchhhCHHHhcCCCCCCCEEEEeccCccHHHHHH
Confidence 68889887 999999999888654 6777 54444 2 1 2444433 6666655 578999998 9999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 134 MEAMEAELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
++|.+.|++.+++ ..+=+.--..+|.+...
T Consensus 74 e~~~~~~~~alIv-p~~~~~g~rkqL~~~~~ 103 (224)
T COG1810 74 EKAAEGGVKALIV-PAEPPEGLRKQLKEFCE 103 (224)
T ss_pred HHHHhCCccEEEE-ecCCChhHHHHHHHHhh
Confidence 9999999999887 55555555555555554
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.94 Score=36.90 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++ .+...+ +..|+..++.+.+++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~--~~~r~~~~--~-----~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVA--IADLNQDG--A-----NAVADEI-NKAGGKAIGVAMDVTNEDAVNAGID 76 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE--EEeCChHH--H-----HHHHHHH-HhcCceEEEEECCCCCHHHHHHHHH
Confidence 35699999999999999999999998888 44443311 0 1111221 211222 3457788888888877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 77 ~~~~~~~~~d~vi~-~ag~ 94 (262)
T PRK13394 77 KVAERFGSVDILVS-NAGI 94 (262)
T ss_pred HHHHHcCCCCEEEE-CCcc
Confidence 76543 4777777 5554
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.81 Score=37.69 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
++|+|.|++|-.|+.+++.+.+.|.+++ .++..... .. ...+++....+++ +.+|...++.+.+++++..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 73 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLG--LVARRTDA--LQ-----AFAARLPKAARVSVYAADVRDADALAAAAADFI 73 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999998888 44433211 00 0011111100121 3467778888888888876
Q ss_pred Hc-C-CCEEEEeCCCC
Q 030169 138 EA-E-LDLVVCITEGI 151 (182)
Q Consensus 138 e~-G-Ik~VV~iTeG~ 151 (182)
+. | +..+|+ ..|+
T Consensus 74 ~~~g~id~lv~-~ag~ 88 (257)
T PRK07024 74 AAHGLPDVVIA-NAGI 88 (257)
T ss_pred HhCCCCCEEEE-CCCc
Confidence 54 4 677776 6564
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.62 Score=38.20 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=52.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+|+ .++..... . ..+.+-.++. +++ +-.|.+.++.+.+++++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVV--ITGRTKEK--L------EEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQ 71 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 4689999999999999999999998888 44433210 1 1111111111 111 23467788888888888
Q ss_pred HHHc--CCCEEEEeCCC
Q 030169 136 AMEA--ELDLVVCITEG 150 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG 150 (182)
..+. ++..+|. ..|
T Consensus 72 ~~~~~~~id~lI~-~ag 87 (252)
T PRK07677 72 IDEKFGRIDALIN-NAA 87 (252)
T ss_pred HHHHhCCccEEEE-CCC
Confidence 8765 5777777 444
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.72 Score=37.89 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHh-ccCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~-~~~~D-vaVdfVpp~av~~a~~e 135 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++..... . ...++... ..+++ +..|...++.+.+++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv--~~~r~~~~-----~---~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 75 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLI--LLDISPEI-----E---KLADELCGRGHRCTAVVADVRDPASVAAAIKR 75 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EecCCHHH-----H---HHHHHHHHhCCceEEEECCCCCHHHHHHHHHH
Confidence 46799999999999999999999998887 66553210 0 11112111 11222 35677888888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. .+..+|. ..|+
T Consensus 76 ~~~~~~~id~vi~-~ag~ 92 (263)
T PRK08226 76 AKEKEGRIDILVN-NAGV 92 (263)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7765 5777776 6564
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.61 Score=38.87 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=55.2
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEecCccccccHHHHHhccC--C-cEEEEeeChHHHH
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAA 130 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~-DvaVdfVpp~av~ 130 (182)
+++..+|+|.|++|..|+.+++.+.+.| .+++ .++..... ... ...+++.+... + -+..|...++.+.
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~--~~~r~~~~-~~~-----~~~~~l~~~~~~~v~~~~~D~~~~~~~~ 76 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVV--LAALPDDP-RRD-----AAVAQMKAAGASSVEVIDFDALDTDSHP 76 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEE--EEeCCcch-hHH-----HHHHHHHhcCCCceEEEEecCCChHHHH
Confidence 4556789999999999999999998875 7887 33332210 000 01222222111 1 2345677788888
Q ss_pred HHHHHHHHc-CCCEEEEeCCCCC
Q 030169 131 AAIMEAMEA-ELDLVVCITEGIP 152 (182)
Q Consensus 131 ~a~~eAie~-GIk~VV~iTeG~~ 152 (182)
+.++++.+. ++..+|+ ..|+.
T Consensus 77 ~~~~~~~~~g~id~li~-~ag~~ 98 (253)
T PRK07904 77 KVIDAAFAGGDVDVAIV-AFGLL 98 (253)
T ss_pred HHHHHHHhcCCCCEEEE-eeecC
Confidence 888887764 5777765 55553
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.54 Score=41.39 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=69.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~ 133 (182)
+..+++|.|+++..|.++++.+.+.|.+++ .|.....- . .-++..++ +++ +++ +.+|.+-++.+..+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~li--LvaR~~~k--L--~~la~~l~---~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLI--LVARREDK--L--EALAKELE---DKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCcHHH--H--HHHHHHHH---HhhCceEEEEECcCCChhHHHHHH
Confidence 345799999999999999999999999999 88876632 1 11222222 222 232 356888889999998
Q ss_pred HHHHHc--CCCEEEEeCCC------CCHHHHHHHHHHhcccchh
Q 030169 134 MEAMEA--ELDLVVCITEG------IPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG------~~~eD~~~l~~~ak~ipv~ 169 (182)
++..+. .|...|+ -.| |.+.+.+++.++-+-.-+|
T Consensus 76 ~~l~~~~~~IdvLVN-NAG~g~~g~f~~~~~~~~~~mi~lN~~a 118 (265)
T COG0300 76 DELKERGGPIDVLVN-NAGFGTFGPFLELSLDEEEEMIQLNILA 118 (265)
T ss_pred HHHHhcCCcccEEEE-CCCcCCccchhhCChHHHHHHHHHHHHH
Confidence 888888 6777776 433 4555555555554433333
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.99 Score=36.26 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ +++...... .. ....++.+.. .+. +..|.+..+.+..++.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~--~~~r~~~~~-~~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVA--IHYHRSAAE-AD-----ALAAELNALRPGSAAALQADLLDPDALPELVA 77 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEcCCCHHH-HH-----HHHHHHHhhcCCceEEEEcCCCCHHHHHHHHH
Confidence 35799999999999999999999999888 666543110 00 0001111110 111 2346677777788877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..|+. ..|.
T Consensus 78 ~~~~~~~~~d~vi~-~ag~ 95 (249)
T PRK09135 78 ACVAAFGRLDALVN-NASS 95 (249)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77665 5677777 5553
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.38 Score=41.65 Aligned_cols=83 Identities=25% Similarity=0.249 Sum_probs=58.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe----cCcccc-------ccHHHHHhccCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH----LGLPVF-------NSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i----~GvPVy-------~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
|||+|.|.| ..|+.+++.+.+.|. +. .-|.-..+++.. .+++|. +.+++.++++++|++||.++|-
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~-~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPf 77 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VI-VSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPF 77 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EE-EEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCch
Confidence 589999974 478999999999886 55 444333333222 122332 2367778888999999999998
Q ss_pred HHH---HHHHHHHHcCCCEE
Q 030169 128 FAA---AAIMEAMEAELDLV 144 (182)
Q Consensus 128 av~---~a~~eAie~GIk~V 144 (182)
+.. .+.+-|-+.||+.+
T Consensus 78 A~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 78 AAEISQNAIEACRELGIPYL 97 (249)
T ss_pred HHHHHHHHHHHHhhcCcceE
Confidence 765 66677778899987
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.59 Score=42.10 Aligned_cols=89 Identities=13% Similarity=0.016 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEec----------------------------Cccc--cc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHL----------------------------GLPV--FN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~----------------------------GvPV--y~ 106 (182)
+.||+|+|+ |-.|..+++.+...| .+|. -||+........ .+.| ++
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg~i~--lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVGHIT--IIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCeEE--EEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 478999999 999999999999998 4444 555544221100 1111 11
Q ss_pred ------cHHHHHhccCCcEEEEeeChHHHH-HHHHHHHHcCCCEEEEeCCCC
Q 030169 107 ------SVAEAKAETKANASVIYVPPPFAA-AAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp~av~-~a~~eAie~GIk~VV~iTeG~ 151 (182)
+..+.++ ++|++|+.+-..... -+-+.|.++++|.|.+-..|+
T Consensus 105 ~~i~~~~~~~~~~--~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 105 RRLTWSNALDELR--DADVILDGSDNFDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred eecCHHHHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 1233444 677777776444333 344566677777776644444
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.13 Score=45.13 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=48.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCccc--cccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~GvPV--y~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
..||+|+|+ |.+|+.+++.+...|.+|. .+++..... . ..|... |+++.+... ++|+++..+|+....+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~--v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~--~aDiVI~t~p~~~i~~ 225 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGANVT--VGARKSAHLARITEMGLSPFHLSELAEEVG--KIDIIFNTIPALVLTK 225 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHcCCeeecHHHHHHHhC--CCCEEEECCChhhhhH
Confidence 578999998 9999999999999998888 444442110 0 123332 245666666 7999999999865443
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.73 Score=37.28 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+|+ .++..... .. ....+. +..+.+ ...|+..++.+.++++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi--~~~r~~~~--~~-----~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVG--LLARTEEN--LK-----AVAEEV-EAYGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHH-HHhCCeEEEEECCCCCHHHHHHHHH
Confidence 35699999999999999999999999888 45443211 10 011121 211112 2446677888888877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..||+ +.|.
T Consensus 77 ~~~~~~~~id~vi~-~ag~ 94 (239)
T PRK07666 77 QLKNELGSIDILIN-NAGI 94 (239)
T ss_pred HHHHHcCCccEEEE-cCcc
Confidence 77654 6888887 6554
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.43 Score=39.69 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEecCcccc----------ccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEHLGLPVF----------NSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i~GvPVy----------~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+.||+|+|+ |.+|+.+++.+...|. +++ .+|+.....+..+-=.| ...++.+.+..+++-+...+.
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i~--lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIGKLI--LVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEE--EECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 467999999 9999999999999995 566 66766322111110011 112333333355555555444
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHH
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQH 154 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~e 154 (182)
....+.+.+.+ .+..+||.-++.+..+
T Consensus 98 ~i~~~~~~~~~-~~~DlVi~a~Dn~~~k 124 (200)
T TIGR02354 98 KITEENIDKFF-KDADIVCEAFDNAEAK 124 (200)
T ss_pred eCCHhHHHHHh-cCCCEEEECCCCHHHH
Confidence 44444444444 3567777634554444
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.21 Score=47.24 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=70.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------------E------------ecCccccccHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------------E------------HLGLPVFNSVAEA 111 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------------~------------i~GvPVy~Sv~ea 111 (182)
+-.||.|+|+ |.||+.++..+...|.++++-.+++..... + ...+..-.++++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~- 81 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA- 81 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-
Confidence 4567999999 999999999999999888722333322110 0 012445666765
Q ss_pred HhccCCcEEEEeeChHHH-HHHHHHHHHcCCC--EEEE-eCCCCCHHHHHH-HHHHhcccchhcch--hhhhh
Q 030169 112 KAETKANASVIYVPPPFA-AAAIMEAMEAELD--LVVC-ITEGIPQHDMVI-NFTRVNILLVAFLN--FIMKL 177 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av-~~a~~eAie~GIk--~VV~-iTeG~~~eD~~~-l~~~ak~ipv~~~~--~~~~~ 177 (182)
.. ++|++|-.+|.+.. ++.+..-++.-.+ .|++ -|..++..++.. +.+-.+.+-+-|.| .+|+|
T Consensus 82 l~--~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~L 152 (503)
T TIGR02279 82 LA--DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMAL 152 (503)
T ss_pred hC--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCce
Confidence 34 79999999997543 4443333554333 3442 378888876433 33333555555655 44454
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.53 Score=38.69 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=54.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHh---ccCC-cEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA---ETKA-NASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~---~~~~-DvaVdfVpp~av~~a~ 133 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++..... . -...+++.+ ..++ -+..|...++.+.+++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVA--LADLDAAL--A-----ERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 35699999999999999999999999888 44443211 0 011112111 0111 1345777888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|. ..|+
T Consensus 78 ~~~~~~~g~id~li~-~ag~ 96 (260)
T PRK07063 78 AAAEEAFGPLDVLVN-NAGI 96 (260)
T ss_pred HHHHHHhCCCcEEEE-CCCc
Confidence 887765 5777777 6664
|
|
| >PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.41 Score=43.96 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=60.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-----CCceEEeeccCCCCCe----------------------------------Ee
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-----GTKMVVGGVTPKKGGT----------------------------------EH 99 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-----g~~IV~AgVdp~~~G~----------------------------------~i 99 (182)
.||.|-|| ||.|+.+.+.+.+. +++|| |-.||...-+ .+
T Consensus 4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievV-AINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVV-AVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEE-EEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 48999999 99999999987764 48899 7656421110 01
Q ss_pred cC--cccc---ccHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 100 LG--LPVF---NSVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 100 ~G--vPVy---~Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+| +++| .++++++ .+.++|+++..+-.-...+-+..=++.|.|.|++
T Consensus 82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii 134 (361)
T PTZ00434 82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI 134 (361)
T ss_pred CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE
Confidence 22 4444 3466665 3458999998777777777777777899999887
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.48 Score=39.49 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=53.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+..+++|.|++|..|..+++.+.+.|.+|+ .++..... .. ...++..+ ...+ ..+|...++.+..++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~Dv~~~~~i~~~~ 77 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVA--VASRSQEK--VD-----AAVAQLQQ-AGPEGLGVSADVRDYAAVEAAF 77 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHH-hCCceEEEECCCCCHHHHHHHH
Confidence 345799999999999999999999998888 55544311 10 11112111 1112 235677888888888
Q ss_pred HHHHHc--CCCEEEE
Q 030169 134 MEAMEA--ELDLVVC 146 (182)
Q Consensus 134 ~eAie~--GIk~VV~ 146 (182)
+++.+. ++..+|+
T Consensus 78 ~~~~~~~~~iD~vi~ 92 (264)
T PRK07576 78 AQIADEFGPIDVLVS 92 (264)
T ss_pred HHHHHHcCCCCEEEE
Confidence 888764 5788887
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.1 Score=36.68 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=53.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... .++..++. .+. +..|...++.+.+++++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVV--LADLDRER-----------GSKVAKALGENAWFIAMDVADEAQVAAGVAE 77 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEE--EEcCCHHH-----------HHHHHHHcCCceEEEEccCCCHHHHHHHHHH
Confidence 5699999999999999999999998888 44432211 11111111 111 35677788888888888
Q ss_pred HHHc--CCCEEEEeCCCCC
Q 030169 136 AMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~~ 152 (182)
+.+. .+..+|. ..|+.
T Consensus 78 ~~~~~g~id~li~-~ag~~ 95 (255)
T PRK05717 78 VLGQFGRLDALVC-NAAIA 95 (255)
T ss_pred HHHHhCCCCEEEE-CCCcc
Confidence 7764 4777777 55543
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.1 Score=36.19 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ ....+.. . -...+.+...+. +++ +-+|...++.+.++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~-~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVA-VNYAGSA-A-------AADELVAEIEAAGGRAIAVQADVADAAAVTRLFD 75 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE-EecCCCH-H-------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 45799999999999999999999998877 3222211 1 011111111111 122 2357778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..++. ..|+
T Consensus 76 ~~~~~~~~id~vi~-~ag~ 93 (245)
T PRK12937 76 AAETAFGRIDVLVN-NAGV 93 (245)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87764 6777777 5664
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.93 Score=37.16 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++... . . -...+++.+ ...+ +..|...++.+.++++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~--~~~r~~-~--~-----~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVV--LVDRSE-L--V-----HEVAAELRA-AGGEALALTADLETYAGAQAAMA 76 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCch-H--H-----HHHHHHHHh-cCCeEEEEEEeCCCHHHHHHHHH
Confidence 35699999999999999999999998888 444321 0 0 011122211 1223 3457788888888888
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..+|. ..|
T Consensus 77 ~~~~~~~~id~lv~-nAg 93 (260)
T PRK12823 77 AAVEAFGRIDVLIN-NVG 93 (260)
T ss_pred HHHHHcCCCeEEEE-CCc
Confidence 88775 5777776 555
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.98 Score=36.64 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=51.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--C-cEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~-DvaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .+..+... .. ..+.+.++... + -+-.|...++.+.+++++
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~--~~~r~~~~-~~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVV--VNYRQKAP-RA------NKVVAEIEAAGGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEE--EEeCCchH-hH------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 5799999999999999999999998888 33332211 00 11111121111 1 234577788888888777
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..+|. ..|.
T Consensus 78 ~~~~~~~~d~vi~-~ag~ 94 (248)
T PRK07806 78 AREEFGGLDALVL-NASG 94 (248)
T ss_pred HHHhCCCCcEEEE-CCCC
Confidence 6654 5676665 5544
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.71 Score=37.90 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=54.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~ 133 (182)
+..+++|.|++|-.|..+++.+.+.|.+++ .++..... . +...+.+.+. +++ .-.|...++...+++
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~--~~~r~~~~--~------~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~ 80 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGARVV--LSARKAEE--L------EEAAAHLEALGIDALWIAADVADEADIERLA 80 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEE--EEeCCHHH--H------HHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 346799999999999999999999998887 44443211 0 0111111111 111 345778888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..||. ..|.
T Consensus 81 ~~~~~~~~~id~vi~-~ag~ 99 (259)
T PRK08213 81 EETLERFGHVDILVN-NAGA 99 (259)
T ss_pred HHHHHHhCCCCEEEE-CCCC
Confidence 887775 6788877 5553
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.1 Score=36.48 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=46.9
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~eA 136 (182)
+++|.|++|..|+.+++.+.+.|.+|+ .++..... .++++.+.. ++ -+..|...++....+++++
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~--~~~r~~~~----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVI--SISRTENK----------ELTKLAEQYNSNLTFHSLDLQDVHELETNFNEI 70 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEE--EEeCCchH----------HHHHHHhccCCceEEEEecCCCHHHHHHHHHHH
Confidence 689999999999999999999998888 55543211 122222211 22 2457778888888888887
Q ss_pred HHc
Q 030169 137 MEA 139 (182)
Q Consensus 137 ie~ 139 (182)
.+.
T Consensus 71 ~~~ 73 (251)
T PRK06924 71 LSS 73 (251)
T ss_pred HHh
Confidence 654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.96 Score=38.22 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=54.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
..++|.|++|..|+.+++.+.+.|.+|+ .++..... +. ...+++ ++...+ +..|...++.+.+++++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv--~~~r~~~~-----l~--~~~~~l-~~~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVV--LGDVDKPG-----LR--QAVNHL-RAEGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-----HH--HHHHHH-HhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999999998888 33332211 10 012222 211222 34678889999999888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. .+..+|. ..|+
T Consensus 77 ~~~~~g~id~li~-nAg~ 93 (275)
T PRK05876 77 AFRLLGHVDVVFS-NAGI 93 (275)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 8765 4777777 6664
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.1 Score=40.43 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=57.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~e 135 (182)
+..+++|.|++|..|..+++.+.+.|.+++ .++..... ..+++..++.+. -+.+|...++.+.+++++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi--~~~~~~~~---------~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 277 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAHVV--CLDVPAAG---------EALAAVANRVGGTALALDITAPDAPARIAEH 277 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEE--EEeCCccH---------HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 346799999999999999999999999988 44432211 112232222222 345688888888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..||. ..|+
T Consensus 278 ~~~~~g~id~vi~-~AG~ 294 (450)
T PRK08261 278 LAERHGGLDIVVH-NAGI 294 (450)
T ss_pred HHHhCCCCCEEEE-CCCc
Confidence 7765 5888887 6665
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.6 Score=38.61 Aligned_cols=82 Identities=6% Similarity=-0.023 Sum_probs=52.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
...++|.|+++..|..+++.+.+.|.+|+ .++..... .. .+ .++ +++...+ ...|...++.+.++++
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~--~~~r~~~~--l~--~~---~~~-i~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLI--LCDQDQSA--LK--DT---YEQ-CSALTDNVYSFQLKDFSQESIRHLFD 74 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEE--EEcCCHHH--HH--HH---HHH-HHhcCCCeEEEEccCCCHHHHHHHHH
Confidence 35689999999999999999999999988 44443311 10 01 111 1111222 2245677888888888
Q ss_pred HHHHc---CCCEEEEeCCC
Q 030169 135 EAMEA---ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~---GIk~VV~iTeG 150 (182)
++.+. .+..+|+ ..|
T Consensus 75 ~~~~~~g~~iD~li~-nag 92 (227)
T PRK08862 75 AIEQQFNRAPDVLVN-NWT 92 (227)
T ss_pred HHHHHhCCCCCEEEE-CCc
Confidence 88765 4777777 443
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.8 Score=34.77 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc--cCC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~--~~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|..++ ..+.... .+++..+. .++ -...|....+.+.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVG--LHGTRVE-----------KLEALAAELGERVKIFPANLSDRDEVKALGQ 72 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEcCCHH-----------HHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence 46799999999999999999999897665 3333221 11121111 122 23456778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|. ..|.
T Consensus 73 ~~~~~~~~id~vi~-~ag~ 90 (245)
T PRK12936 73 KAEADLEGVDILVN-NAGI 90 (245)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77764 5777777 5554
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.54 Score=42.66 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-----------------ecCccccccHHHHHhccCCcE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-----------------HLGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-----------------i~GvPVy~Sv~ea~~~~~~Dv 119 (182)
..++|+|.|++|-.|+-+++.+++.|.+|. |-|-.....+. ..++--|+++.++.+ +||.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~-gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~--gcdg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVR-GTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID--GCDG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEE-EEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--CCCE
Confidence 467899999999999999999999999998 65433322111 136778888999998 6777
Q ss_pred EEEeeCh-----------------HHHHHHHHHHHHcC-CCEEEEeC
Q 030169 120 SVIYVPP-----------------PFAAAAIMEAMEAE-LDLVVCIT 148 (182)
Q Consensus 120 aVdfVpp-----------------~av~~a~~eAie~G-Ik~VV~iT 148 (182)
++=.-.| ..+..+++-|.+.. ++.||. |
T Consensus 82 VfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~-T 127 (327)
T KOG1502|consen 82 VFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY-T 127 (327)
T ss_pred EEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE-e
Confidence 6532222 12345566666666 888886 6
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.91 Score=37.26 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
.+|+|.|++|..|+.+++.+.+.|.+++ .++..... . ..+.+.+...+.. ...|...++...+++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi--~~~r~~~~--~------~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 71 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLV--LAARNETR--L------ASLAQELADHGGEALVVPTDVSDAEACERLIEA 71 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 4689999999999999999999998888 44443211 0 0111111111112 24467778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..||. ..|.
T Consensus 72 ~~~~~~~id~vi~-~ag~ 88 (263)
T PRK06181 72 AVARFGGIDILVN-NAGI 88 (263)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7765 6788887 5554
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.38 Score=38.95 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+.+++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...+.+.+... ++ -+..|...++.+.+.+++.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~--~~~r~~~~--~~--~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVA--VFDLNREA--AE--KVAADIRAKGG--NAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EecCCHHH--HH--HHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHH
Confidence 46799999999999999999999998887 45443311 00 01111111100 11 1345666777788877776
Q ss_pred HHc--CCCEEEEeCCC
Q 030169 137 MEA--ELDLVVCITEG 150 (182)
Q Consensus 137 ie~--GIk~VV~iTeG 150 (182)
.+. ++..+|. ..|
T Consensus 75 ~~~~~~~d~vi~-~ag 89 (250)
T TIGR03206 75 EQALGPVDVLVN-NAG 89 (250)
T ss_pred HHHcCCCCEEEE-CCC
Confidence 654 5676776 444
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.95 Score=37.11 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D---vaVdfVpp~av~~a~ 133 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... .-...+++.+.. +.+ +.+|+..++...+++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~--~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVL--IVARDADA-------LAQARDELAEEFPEREVHGLAADVSDDEDRRAIL 79 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEE--EEeCCHHH-------HHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 46799999999999999999999998888 44432211 011112221110 112 245777888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|. ..|.
T Consensus 80 ~~~~~~~g~id~li~-~ag~ 98 (257)
T PRK09242 80 DWVEDHWDGLHILVN-NAGG 98 (257)
T ss_pred HHHHHHcCCCCEEEE-CCCC
Confidence 877654 5777777 6664
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.5 Score=40.49 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++.+... . ..+.+-..+...+ +..|...++.+.++++
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi--~~~R~~~~--l------~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVV--AVARREDL--L------DAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 35799999999999999999999999988 44443211 1 0111111111112 2356677888888877
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030169 135 EAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~ 152 (182)
+..+. ++..+|+ ..|+.
T Consensus 110 ~~~~~~g~id~li~-~AG~~ 128 (293)
T PRK05866 110 DVEKRIGGVDILIN-NAGRS 128 (293)
T ss_pred HHHHHcCCCCEEEE-CCCCC
Confidence 76654 6888887 66653
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.65 Score=44.71 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=30.9
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTP 92 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp 92 (182)
-+.+.++|+|.|++|-.|+.+++.+.+. |.+|+ +++.
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~--~l~r 348 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVY--GLDI 348 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEE--EEeC
Confidence 4556789999999999999999999975 68899 5554
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.2 Score=35.70 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=26.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
..+|+|.|++|..|+.+++.+.+.|.+++
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~ 34 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVR 34 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence 35799999999999999999999998887
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.3 Score=47.11 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=60.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccc-c--HHHHHhc---cCCcEEEEeeChHH-H
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPF-A 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~-S--v~ea~~~---~~~DvaVdfVpp~a-v 129 (182)
..+|+|+|+ |+.|+.+++.+.+.|.++++=.-||..... ...|.+||. + =.|.+++ .++|+.++.++-+. .
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 467999999 999999999999999887711344443110 013666653 3 2222321 27899998887754 4
Q ss_pred HHHHHHHHHcCCCE-EEEeCCCCCHHHHHHHHHH
Q 030169 130 AAAIMEAMEAELDL-VVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 130 ~~a~~eAie~GIk~-VV~iTeG~~~eD~~~l~~~ 162 (182)
..++..+.++..+. |++-+ -..++..++.++
T Consensus 479 ~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~ 510 (621)
T PRK03562 479 LQLVELVKEHFPHLQIIARA--RDVDHYIRLRQA 510 (621)
T ss_pred HHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHC
Confidence 45556666654332 33323 334555555543
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.52 Score=43.86 Aligned_cols=88 Identities=20% Similarity=0.132 Sum_probs=62.7
Q ss_pred cCCceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCe----------E-----------------ecCcccccc
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGT----------E-----------------HLGLPVFNS 107 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~----------~-----------------i~GvPVy~S 107 (182)
++..||-++|+ |.||+-++.+... .|+++| |--|.+..+- + -+-+-|-++
T Consensus 15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vv-aisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D 92 (438)
T COG4091 15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVV-AISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDD 92 (438)
T ss_pred CCceEEEEecc-cccchHHHHHHhhcCCceEE-EEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecc
Confidence 45689999999 9999998776664 579999 6433322110 0 013444555
Q ss_pred HHHHHhccCCcEEEEeeC-hHHHHHHHHHHHHcCCCEEE
Q 030169 108 VAEAKAETKANASVIYVP-PPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVp-p~av~~a~~eAie~GIk~VV 145 (182)
.+++.....+|++|+.+- |....++..+|++||.++|.
T Consensus 93 ~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVM 131 (438)
T COG4091 93 AELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVM 131 (438)
T ss_pred hhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEE
Confidence 666665557899999885 56777999999999999983
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.39 Score=39.84 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
+.+++|.|++|..|+.+++.+.+.|.+|+ +++..... .. +....+.+.....++. +..|...++.+.++++++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~--~~~r~~~~--~~--~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVM--IVGRNPDK--LA--AAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEE--EEeCCHHH--HH--HHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 46799999999999999999999998887 55543311 11 0111111100000111 124667788888888887
Q ss_pred HHc--CCCEEEEeCCC
Q 030169 137 MEA--ELDLVVCITEG 150 (182)
Q Consensus 137 ie~--GIk~VV~iTeG 150 (182)
.+. ++..++. ..|
T Consensus 81 ~~~~~~~d~li~-~ag 95 (276)
T PRK05875 81 TAWHGRLHGVVH-CAG 95 (276)
T ss_pred HHHcCCCCEEEE-CCC
Confidence 765 5777776 554
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.35 Score=46.42 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--CCe-EecCcccc-cc--HHHHHhc---cCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--GGT-EHLGLPVF-NS--VAEAKAE---TKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--~G~-~i~GvPVy-~S--v~ea~~~---~~~DvaVdfVpp~a 128 (182)
+.+|+|+|+ |+.|+.+++.+.+.|.+++ .+|.+. ..+ ...|.|+| .+ =.|.+++ .++|+.+..++.+.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vv--vID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRIT--VLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEE--EEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 467999999 9999999999999998888 555443 110 01356654 33 2222322 27899999998876
Q ss_pred HH-HHHHHHHHcCC
Q 030169 129 AA-AAIMEAMEAEL 141 (182)
Q Consensus 129 v~-~a~~eAie~GI 141 (182)
.. .++..+.+...
T Consensus 477 ~n~~i~~~~r~~~p 490 (601)
T PRK03659 477 DTMKIVELCQQHFP 490 (601)
T ss_pred HHHHHHHHHHHHCC
Confidence 66 55555555543
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.7 Score=35.76 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=54.3
Q ss_pred CCceEEEEccCC-CCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc---CC-cEEEEeeChHHHHH
Q 030169 57 KNTRVICQGITG-KNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KA-NASVIYVPPPFAAA 131 (182)
Q Consensus 57 ~~trViVvG~tG-kmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~---~~-DvaVdfVpp~av~~ 131 (182)
+..+++|.|++| ..|..+++.+.+.|.+|+ .++..... .. ...+++.+.. ++ -+..|...++.+.+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~--~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVV--ISDIHERR--LG-----ETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 356799999997 699999999999998887 34433211 10 1112211111 12 23357788888888
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030169 132 AIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~ 151 (182)
+++++.+. ++..+|. ..|+
T Consensus 87 ~~~~~~~~~g~id~li~-~ag~ 107 (262)
T PRK07831 87 LIDAAVERLGRLDVLVN-NAGL 107 (262)
T ss_pred HHHHHHHHcCCCCEEEE-CCCC
Confidence 88888765 5677776 6664
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.3 Score=36.37 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
+.+++|.|++|-.|..+++.+.+.|.+++ .++..... .. .+.+.+. ..+. +..|...++.+.+++++.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~--~~~r~~~~--~~------~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVV--IADIKPAR--AR------LAALEIG-PAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEE--EEcCCHHH--HH------HHHHHhC-CceEEEEccCCCHHHHHHHHHHH
Confidence 35699999999999999999999999888 44443211 10 0111111 0122 344667788888888777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..+|. ..|.
T Consensus 75 ~~~~~~id~li~-~ag~ 90 (257)
T PRK07067 75 VERFGGIDILFN-NAAL 90 (257)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 654 4677776 5443
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.25 Score=45.22 Aligned_cols=84 Identities=24% Similarity=0.287 Sum_probs=48.2
Q ss_pred ecCCceEEEEccCCCCchh-hhHHHHHhCCceEEeeccCCCCCe--E--ecCccccc-cHHHHHhccCCcEEEEeeChHH
Q 030169 55 VDKNTRVICQGITGKNGTF-HTEQAIEYGTKMVVGGVTPKKGGT--E--HLGLPVFN-SVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~-v~k~~~~~g~~IV~AgVdp~~~G~--~--i~GvPVy~-Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+.+..+|.|+|+ |+.|.. +++.+.+.|.++. +.|.+.... + -.|++++. .-.+.++ ++|++|..-.-..
T Consensus 4 ~~~~~~v~viG~-G~sG~s~~a~~L~~~G~~V~--~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~--~~d~vv~spgi~~ 78 (461)
T PRK00421 4 LRRIKRIHFVGI-GGIGMSGLAEVLLNLGYKVS--GSDLKESAVTQRLLELGAIIFIGHDAENIK--DADVVVYSSAIPD 78 (461)
T ss_pred cCCCCEEEEEEE-chhhHHHHHHHHHhCCCeEE--EECCCCChHHHHHHHCCCEEeCCCCHHHCC--CCCEEEECCCCCC
Confidence 445678999999 999999 6889999999888 666543210 0 12555542 1122223 4665443221111
Q ss_pred HHHHHHHHHHcCCCE
Q 030169 129 AAAAIMEAMEAELDL 143 (182)
Q Consensus 129 v~~a~~eAie~GIk~ 143 (182)
-...+.+|.++|++.
T Consensus 79 ~~~~~~~a~~~~i~i 93 (461)
T PRK00421 79 DNPELVAARELGIPV 93 (461)
T ss_pred CCHHHHHHHHCCCcE
Confidence 123456666666655
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.24 Score=44.17 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=67.4
Q ss_pred EEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe-----Ee------cCc-----ccccc------HHHHHhccCC
Q 030169 61 VICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT-----EH------LGL-----PVFNS------VAEAKAETKA 117 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~-----~i------~Gv-----PVy~S------v~ea~~~~~~ 117 (182)
|+|.|++|..|+.+++.+.+++ -+|+ .+|...... +. ..+ |+..+ +.++.++++|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~li--l~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~p 78 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLI--LFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKP 78 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEE--EEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEE--EeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCC
Confidence 6899999999999999999998 4566 555442110 01 012 33334 5666677789
Q ss_pred cEEEEeeC-----------h-------HHHHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHhcccc--
Q 030169 118 NASVIYVP-----------P-------PFAAAAIMEAMEAELDLVVCITEG----------IPQHDMVINFTRVNILL-- 167 (182)
Q Consensus 118 DvaVdfVp-----------p-------~av~~a~~eAie~GIk~VV~iTeG----------~~~eD~~~l~~~ak~ip-- 167 (182)
|+++=+.- . -.++.+++.|+++|++.+|+++|. .+..-++++...+.+-.
T Consensus 79 diVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmGatKrlaE~l~~~~~~~~~~ 158 (293)
T PF02719_consen 79 DIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMGATKRLAEKLVQAANQYSGN 158 (293)
T ss_dssp SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHHHHHHHHHHHHHHHCCTSSS
T ss_pred CEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHHHHHHHHHHHHHHHhhhCCC
Confidence 99876531 1 234567889999999999998865 44455555555554444
Q ss_pred -------hhcchhh
Q 030169 168 -------VAFLNFI 174 (182)
Q Consensus 168 -------v~~~~~~ 174 (182)
|=|||.+
T Consensus 159 ~~t~f~~VRFGNVl 172 (293)
T PF02719_consen 159 SDTKFSSVRFGNVL 172 (293)
T ss_dssp S--EEEEEEE-EET
T ss_pred CCcEEEEEEeccee
Confidence 6666654
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.2 Score=45.25 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=50.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe------E--ecCcccc-cc-HHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT------E--HLGLPVF-NS-VAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~------~--i~GvPVy-~S-v~ea~~~~~~DvaVdfVpp~ 127 (182)
..+|+|+|+ |+.|..+++.+.+.|.+|+ ++|+..... + -.|+.++ .+ ..+... ++|++|......
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~~V~--~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~ 79 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGAKVI--LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVP 79 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCC
Confidence 477999998 7799999999999999888 777753110 0 0133332 22 222223 578877765544
Q ss_pred HHHHHHHHHHHcCCCE
Q 030169 128 FAAAAIMEAMEAELDL 143 (182)
Q Consensus 128 av~~a~~eAie~GIk~ 143 (182)
.....+.+|.+.||+.
T Consensus 80 ~~~~~~~~a~~~~i~~ 95 (450)
T PRK14106 80 LDSPPVVQAHKKGIEV 95 (450)
T ss_pred CCCHHHHHHHHCCCcE
Confidence 4445666666666654
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=1 Score=36.95 Aligned_cols=83 Identities=19% Similarity=0.113 Sum_probs=54.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc---cCC-cEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE---TKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~---~~~-DvaVdfVpp~av~~a~~ 134 (182)
.+|+|.|++|..|+.+++.+.+.|.+++ .++..... ... ..+++... .++ -+..|...++.+.++++
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi--~~~r~~~~--~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 73 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVA--VADINSEK--AAN-----VAQEINAEYGEGMAYGFGADATSEQSVLALSR 73 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--HHH-----HHHHHHHhcCCceeEEEEccCCCHHHHHHHHH
Confidence 4699999999999999999999998888 55543311 100 11111111 112 24457778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 74 ~~~~~~~~id~vv~-~ag~ 91 (259)
T PRK12384 74 GVDEIFGRVDLLVY-NAGI 91 (259)
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 87764 5777777 5554
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.3 Score=34.99 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=26.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
++++|.|++|.+|..+++.+.+. .+++ ++++.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi--~~~r~ 32 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVI--TAGRS 32 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEE--EEecC
Confidence 36999999999999999998877 7777 55554
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.32 Score=43.90 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=48.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--e---E--ecCccccc--cHHHHHhccCCcEEEEeeC-hH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--T---E--HLGLPVFN--SVAEAKAETKANASVIYVP-PP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~---~--i~GvPVy~--Sv~ea~~~~~~DvaVdfVp-p~ 127 (182)
..+|+|.|+ |+.|...++.+.+.|.+|+ +.|..... . + ..|+.++. ...+.+.. .+|++|. +| -.
T Consensus 5 ~k~v~v~G~-g~~G~s~a~~l~~~G~~V~--~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~d~vV~-s~gi~ 79 (447)
T PRK02472 5 NKKVLVLGL-AKSGYAAAKLLHKLGANVT--VNDGKPFSENPEAQELLEEGIKVICGSHPLELLDE-DFDLMVK-NPGIP 79 (447)
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE--EEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcC-cCCEEEE-CCCCC
Confidence 467999999 6699999999999999888 55543211 0 0 12566552 23343331 3775443 33 11
Q ss_pred HHHHHHHHHHHcCCCEE
Q 030169 128 FAAAAIMEAMEAELDLV 144 (182)
Q Consensus 128 av~~a~~eAie~GIk~V 144 (182)
.....+++|.+.|++.+
T Consensus 80 ~~~~~~~~a~~~~i~v~ 96 (447)
T PRK02472 80 YTNPMVEKALEKGIPII 96 (447)
T ss_pred CCCHHHHHHHHCCCcEE
Confidence 12345677777777654
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.69 Score=38.16 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=52.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+++|.|++|.+|..+++.+.+.|.+|+ .++..... .. .-..+.....+.. +..|...++.+.++.+..
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLL--LVGRNAEK--LE-----ALAARLPYPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEECCHHH--HH-----HHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 45799999999999999999999998877 55543211 10 0011110000111 245677888877777766
Q ss_pred HHc-CCCEEEEeCCCCC
Q 030169 137 MEA-ELDLVVCITEGIP 152 (182)
Q Consensus 137 ie~-GIk~VV~iTeG~~ 152 (182)
.+. ++..+|. ..|..
T Consensus 76 ~~~~~id~lv~-~ag~~ 91 (263)
T PRK09072 76 REMGGINVLIN-NAGVN 91 (263)
T ss_pred HhcCCCCEEEE-CCCCC
Confidence 543 5666776 66653
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.79 Score=43.89 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=27.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHh--CCceEEeecc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVT 91 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVd 91 (182)
.+||+|.|++|-.|+.+++.+.+. +.+|+ +++
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~--~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIV--VLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEE--EEe
Confidence 478999999999999999999876 57888 444
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.17 Score=47.74 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe------------EecC-------------ccccccHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT------------EHLG-------------LPVFNSVAEA 111 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~------------~i~G-------------vPVy~Sv~ea 111 (182)
+-.+|.|+|+ |.||..++..+...|.++++-..++..... ...| +..-.++++
T Consensus 6 ~i~~V~VIGa-G~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~- 83 (507)
T PRK08268 6 SIATVAVIGA-GAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD- 83 (507)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 4467999999 999999999999989888822333332111 0012 556677766
Q ss_pred HhccCCcEEEEeeChHHHHHHHH-HHHHcCCC--EEEE-eCCCCCHHHHHHHHHHhc-ccchhcch
Q 030169 112 KAETKANASVIYVPPPFAAAAIM-EAMEAELD--LVVC-ITEGIPQHDMVINFTRVN-ILLVAFLN 172 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av~~a~~-eAie~GIk--~VV~-iTeG~~~eD~~~l~~~ak-~ipv~~~~ 172 (182)
.. ++|++|-.+|.+...+... .-++.-.+ .|++ -|+.++..++..-....+ .+-+-|.|
T Consensus 84 ~~--~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~ 147 (507)
T PRK08268 84 LA--DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFN 147 (507)
T ss_pred hC--CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecC
Confidence 34 7999999999877654432 33444332 3442 288899875443222211 24555555
|
|
| >PLN02700 homoserine dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.43 Score=43.94 Aligned_cols=48 Identities=10% Similarity=-0.061 Sum_probs=35.7
Q ss_pred cCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 115 TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 115 ~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
...+++||.++.....+...+++++|+++|-+ -.+.-..+..++.+++
T Consensus 108 ~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTa-NK~~~a~~~~~~~~la 155 (377)
T PLN02700 108 STGLVVVDCSASMETIGALNEAVDLGCCIVLA-NKKPLTSTLEDYDKLA 155 (377)
T ss_pred cCCCEEEECCCChHHHHHHHHHHHCCCeEEcC-CchHhccCHHHHHHHH
Confidence 34699999999988899999999999999855 4333344444455554
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.85 Score=36.99 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=53.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ ....... . .. ..+.+.+.+...+ +-.|+..++.+.++++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~-~~~~~~~-~-~~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGAKVV-INYNSSK-E-AA------ENLVNELGKEGHDVYAVQADVSKVEDANRLVE 76 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEE-EEcCCcH-H-HH------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46799999999999999999999998887 4332221 1 00 1111112211222 2356677788888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..|+. ..|+
T Consensus 77 ~~~~~~~~id~vi~-~ag~ 94 (247)
T PRK12935 77 EAVNHFGKVDILVN-NAGI 94 (247)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87765 3677776 5665
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.93 Score=37.39 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+|+ .++..... .+++.++. ++ -+..|...++.+..+++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVA--VLERSAEK-----------LASLRQRFGDHVLVVEGDVTSYADNQRAVD 72 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-----------HHHHHHHhCCcceEEEccCCCHHHHHHHHH
Confidence 45799999999999999999999999888 44443211 12222211 11 23456777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|+
T Consensus 73 ~~~~~~g~id~li~-~ag~ 90 (263)
T PRK06200 73 QTVDAFGKLDCFVG-NAGI 90 (263)
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 87765 5777777 6664
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=1 Score=36.73 Aligned_cols=81 Identities=16% Similarity=0.091 Sum_probs=53.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~~eA 136 (182)
.+|+|.|++|..|..+++.+.+.|.+++ .++..... .. ...+++.+.. ++ -+-+|....+.+.++++++
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVI--VSSRKLDG--CQ-----AVADAIVAAGGKAEALACHIGEMEQIDALFAHI 79 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5699999999999999999999998888 55554311 11 1122222110 11 2445677788888888887
Q ss_pred HHc--CCCEEEEeC
Q 030169 137 MEA--ELDLVVCIT 148 (182)
Q Consensus 137 ie~--GIk~VV~iT 148 (182)
.+. .+..+|+..
T Consensus 80 ~~~~~~id~li~~a 93 (252)
T PRK07035 80 RERHGRLDILVNNA 93 (252)
T ss_pred HHHcCCCCEEEECC
Confidence 764 478887634
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.79 Score=37.27 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=49.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...++........ +-.|...++.+.+.+++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLY--LAARDVER--LE-----RLADDLRARGAVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEE--EEeCCHHH--HH-----HHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 4699999999999999999999998877 44444321 10 0111111110111 12345566677777776
Q ss_pred HHHcCCCEEEEeCCCC
Q 030169 136 AMEAELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~GIk~VV~iTeG~ 151 (182)
+.+ .+..+++ ..|.
T Consensus 73 ~~~-~~d~vv~-~ag~ 86 (243)
T PRK07102 73 LPA-LPDIVLI-AVGT 86 (243)
T ss_pred Hhh-cCCEEEE-CCcC
Confidence 654 4677776 5553
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.72 E-value=1.5 Score=35.50 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=50.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+++++|.|++|..|+.+++.+.+.|.+++ .++... ... ....+ =+-.|+..++.+.+++++.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~--~~~~~~-------------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVI--GFDQAF-------------LTQ--EDYPFATFVLDVSDAAAVAQVCQRL 70 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEecch-------------hhh--cCCceEEEEecCCCHHHHHHHHHHH
Confidence 46799999999999999999999998888 443322 000 00011 1335667788888887777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..++. ..|.
T Consensus 71 ~~~~~~id~vi~-~ag~ 86 (252)
T PRK08220 71 LAETGPLDVLVN-AAGI 86 (252)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 665 3667776 4444
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.53 Score=44.19 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=62.9
Q ss_pred CchhhhHHHHHhCCceEEeeccCCCCCeE--e------cCccccccHHHHHhcc-CCcEEEEeeChHHHH-HHHHHHHHc
Q 030169 70 NGTFHTEQAIEYGTKMVVGGVTPKKGGTE--H------LGLPVFNSVAEAKAET-KANASVIYVPPPFAA-AAIMEAMEA 139 (182)
Q Consensus 70 mG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i------~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~av~-~a~~eAie~ 139 (182)
||+.++.++.+.|++++ ..|......+ . .|+..++|++|+.+.. .+|++++.+|...+. ++++..+..
T Consensus 1 MG~~mA~nL~~~G~~V~--v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~ 78 (459)
T PRK09287 1 MGKNLALNIASHGYTVA--VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPL 78 (459)
T ss_pred CcHHHHHHHHhCCCeEE--EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhc
Confidence 89999999999999988 5555432111 1 2488899999998854 489999999987554 444554443
Q ss_pred -CC-CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 140 -EL-DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 140 -GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.. ..||- +.....+|..++.+..++-.+
T Consensus 79 l~~GdiiID-~gn~~~~~t~~~~~~l~~~Gi 108 (459)
T PRK09287 79 LEKGDIIID-GGNSNYKDTIRREKELAEKGI 108 (459)
T ss_pred CCCCCEEEE-CCCCCHHHHHHHHHHHHhcCC
Confidence 11 23444 555566666666665554443
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.4 Score=35.92 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=51.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCcEE-EEe--eChHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KANAS-VIY--VPPPFAAA 131 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~Dva-Vdf--Vpp~av~~ 131 (182)
+..+|+|.|++|.+|..+++.+.+.|.+++ .++..... .. .-.+++.+.. .+.+. .|. ...+.+.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi--~~~r~~~~--~~-----~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGATVI--LLGRTEEK--LE-----AVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCcEE--EEeCCHHH--HH-----HHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence 567799999999999999999999898888 55544311 10 1112221111 11111 222 25566777
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030169 132 AIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~ 151 (182)
+++++.+. .+..||. ..|.
T Consensus 82 ~~~~~~~~~~~id~vi~-~Ag~ 102 (247)
T PRK08945 82 LADTIEEQFGRLDGVLH-NAGL 102 (247)
T ss_pred HHHHHHHHhCCCCEEEE-CCcc
Confidence 77776665 5777777 5554
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.1 Score=42.44 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=28.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeecc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd 91 (182)
..+|+|||+ |+.|+..++.+.+.|.+|| +--|
T Consensus 237 Gk~VaVqG~-GnVg~~aa~~L~e~GakVV-avSD 268 (454)
T PTZ00079 237 GKTVVVSGS-GNVAQYAVEKLLQLGAKVL-TMSD 268 (454)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEEc
Confidence 468999999 9999999999999999999 6333
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.7 Score=35.57 Aligned_cols=82 Identities=18% Similarity=0.099 Sum_probs=53.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCC-cEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~-DvaVdfVpp~av~~a~~eA 136 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... .. ..+++.+. .++ -...|+..++....+++++
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~--~~~r~~~~-----~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPV--IFGRSAPD-----DE---FAEELRALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEE--EEcCChhh-----HH---HHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4699999999999999999999998887 34333211 11 12222111 011 2445677778788877777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..++. ..|.
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (258)
T PRK08628 78 VAKFGRIDGLVN-NAGV 93 (258)
T ss_pred HHhcCCCCEEEE-CCcc
Confidence 665 5777777 6564
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.76 Score=39.52 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHh-ccCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~-~~~~D-vaVdfVpp~av~~a~~e 135 (182)
..+++|.|++|-.|..+++.+.+.|.+|+ .++..... .. ...+++.. ..++. +..|...++.+.+++++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~--~~~r~~~~--~~-----~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 76 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGWHVI--MACRNLKK--AE-----AAAQELGIPPDSYTIIHIDLGDLDSVRRFVDD 76 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCCEEE--EEECCHHH--HH-----HHHHHhhccCCceEEEEecCCCHHHHHHHHHH
Confidence 45699999999999999999999998888 34432211 00 00111111 01122 34678888888888888
Q ss_pred HHHcC--CCEEEEeCCCC
Q 030169 136 AMEAE--LDLVVCITEGI 151 (182)
Q Consensus 136 Aie~G--Ik~VV~iTeG~ 151 (182)
..+.+ +..+|+ ..|+
T Consensus 77 ~~~~~~~iD~li~-nAg~ 93 (322)
T PRK07453 77 FRALGKPLDALVC-NAAV 93 (322)
T ss_pred HHHhCCCccEEEE-CCcc
Confidence 66553 788887 5553
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.60 E-value=2.4 Score=34.26 Aligned_cols=83 Identities=20% Similarity=0.172 Sum_probs=53.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC----cEEEEeeChHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA----NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~----DvaVdfVpp~av~~a~~e 135 (182)
+|+|.|++|..|..+++.+.+.|.+++ .++..... .... ..+++.+.... .+..|+..++...+++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~--~~~r~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVF--LTDINDAA-GLDA-----FAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQ 72 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCcch-HHHH-----HHHHHHhcCCCceEEEEEeecCCHHHHHHHHHH
Confidence 489999999999999999999998888 44433111 0110 01121111111 245588888988888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.++ ++..+|. ..|+
T Consensus 73 ~~~~~~~id~vi~-~ag~ 89 (251)
T PRK07069 73 AADAMGGLSVLVN-NAGV 89 (251)
T ss_pred HHHHcCCccEEEE-CCCc
Confidence 8764 5777776 5554
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.85 Score=37.30 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=53.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... .. .+.+-+.+.+++ .-.|...++.+..+++++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~--~~~r~~~~--~~------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVL--ALDIDAAA--LA------AFADALGDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH------HHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4699999999999999999999998888 44443211 00 011111111333 2567778888888887776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..|+. ..|.
T Consensus 73 ~~~~~~d~vi~-~ag~ 87 (257)
T PRK07074 73 AERGPVDVLVA-NAGA 87 (257)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 64 5777777 5554
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.44 Score=38.99 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..++|.|++|..|..+++.+.+.|.+++ .++..... .. .. .+++.+. .++. ...|...++.+.++++++
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~--~~~r~~~~--~~--~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVA--IVDYNEET--AQ--AA---ADKLSKDGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH--HH---HHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4688999999999999999999998888 45433211 00 01 1111110 0111 345788899999988888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 74 ~~~~~~id~vi~-~ag~ 89 (256)
T PRK08643 74 VDTFGDLNVVVN-NAGV 89 (256)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 6788877 6665
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.95 Score=36.94 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=40.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccC-CCC-----CeEe--cCccccccHHHHHhccCCcEEEEeeC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP-KKG-----GTEH--LGLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp-~~~-----G~~i--~GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
++|+|.|+||..|+.+++.+++.|.+++ +.+-. .+. +-++ .++---.++..+.+ +.|..++.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~-~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~a~~--G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVR-AAVRNPEAAAALAGGVEVVLGDLRDPKSLVAGAK--GVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEE-EEEeCHHHHHhhcCCcEEEEeccCCHhHHHHHhc--cccEEEEEec
Confidence 4799999999999999999998898888 54322 111 1011 11222223444444 7787777777
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.2 Score=37.56 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhC--CceEEeec
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG--TKMVVGGV 90 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g--~~IV~AgV 90 (182)
+|+|.|++|-.|+.+++.+.+.| .+|+ +.+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~-~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVI-CLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEE-EEE
Confidence 48999999999999999999887 6688 554
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.6 Score=36.14 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... .+++.++. ++ =+..|...++.+.++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 72 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVA--IVDIDADN-----------GAAVAASLGERARFIATDITDDAAIERAVA 72 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH-----------HHHHHHHhCCeeEEEEecCCCHHHHHHHHH
Confidence 45799999999999999999999999888 44443211 12222211 11 13457778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|+
T Consensus 73 ~~~~~~g~id~lv~-~ag~ 90 (261)
T PRK08265 73 TVVARFGRVDILVN-LACT 90 (261)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87764 5777776 5453
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.88 Score=37.63 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|+++..|+.+++.+.+.|.+++ .+...... ... ...+++...... -+.+|++.++.+.++++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~--~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGVNIA--FTYNSNVE-EAN-----KIAEDLEQKYGIKAKAYPLNILEPETYKELFK 79 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEcCCCHH-HHH-----HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 35689999999999999999999999887 33322100 000 011121111122 23457788899988888
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
+..+. .+..+|+ ..|
T Consensus 80 ~~~~~~g~id~lv~-nAg 96 (260)
T PRK08416 80 KIDEDFDRVDFFIS-NAI 96 (260)
T ss_pred HHHHhcCCccEEEE-Ccc
Confidence 87764 5677776 444
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=2 Score=35.31 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
...++|.|++|-.|+.+++.+.+.|.+++ .++..... -.....+.+++. ++ -+-.|...++.+.++++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~--~~~r~~~~-------~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGADVA--LFDLRTDD-------GLAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCcch-------HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 45789999999999999999999999888 44443211 011111112211 22 23457778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|+
T Consensus 79 ~~~~~~g~id~li~-~ag~ 96 (254)
T PRK06114 79 RTEAELGALTLAVN-AAGI 96 (254)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87764 5777776 6665
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.85 Score=40.06 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=27.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK 93 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~ 93 (182)
.+.+|+|+|+ |-.|..+++.+...| .+|. -+|+.
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~it--LiD~D 63 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGIGAIT--LIDMD 63 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCCCEEE--EEeCC
Confidence 3578999999 999999999999988 5555 55544
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.67 Score=38.84 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=26.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK 93 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~ 93 (182)
..+|+|+|+ |.+|..+++.+...| .+|. -+|..
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg~i~--lvD~D 61 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVGNLK--LVDFD 61 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCCeEE--EEeCC
Confidence 467999999 999999999999888 4455 55555
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.99 Score=38.28 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=46.7
Q ss_pred CccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH--cCCCEEEEeCCCCCHHHHHHHHH
Q 030169 101 GLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME--AELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 101 GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie--~GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
|+.++++..++.+ ++|++++.|+|....+++.+.-. .+=+.||-++.|++.+++.++..
T Consensus 30 g~~~~~~~~e~~~--~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~ 90 (245)
T TIGR00112 30 GIVASSDAQEAVK--EADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLG 90 (245)
T ss_pred CcEEeCChHHHHh--hCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcC
Confidence 3445667778777 78999999999999998876653 23368888899999999998764
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.4 Score=39.08 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=46.6
Q ss_pred CceEEEEccCCCC-chhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKN-GTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkm-G~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..+|+|+|+ |.| |..+++.+.+.|.+++ .++.. ++.+.+.+. ++|++|-.++.... +-.+.
T Consensus 44 gk~vlViG~-G~~~G~~~a~~L~~~g~~V~--v~~r~-----------~~~l~~~l~--~aDiVIsat~~~~i--i~~~~ 105 (168)
T cd01080 44 GKKVVVVGR-SNIVGKPLAALLLNRNATVT--VCHSK-----------TKNLKEHTK--QADIVIVAVGKPGL--VKGDM 105 (168)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCCEEE--EEECC-----------chhHHHHHh--hCCEEEEcCCCCce--ecHHH
Confidence 578999999 887 8889999999997766 44443 245666676 79999999987552 33344
Q ss_pred HHcC
Q 030169 137 MEAE 140 (182)
Q Consensus 137 ie~G 140 (182)
++.+
T Consensus 106 ~~~~ 109 (168)
T cd01080 106 VKPG 109 (168)
T ss_pred ccCC
Confidence 4443
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.75 Score=42.02 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=28.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGG 96 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G 96 (182)
+.||+|+|+ |-.|..+++++...| .+|. -+|+....
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gvg~l~--lvD~D~ve 74 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGIGRIG--IVDFDVVD 74 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EECCCEec
Confidence 478999999 999999999999999 4444 66665533
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.55 Score=46.60 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeEe-c---------CccccccHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTEH-L---------GLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~i-~---------GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
+.||+|+|+ | .|+.++..+...| ++|. -||........ + |.|=-...++.+.+.++++-|...+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~--lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELR--LADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEE--EEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 477999999 8 9999999988887 3666 55554322211 1 1111111222233334555555555
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.....+.+++.++ +...|+..+..+..+.+..-....+.+|+
T Consensus 183 ~~i~~~n~~~~l~-~~DlVvD~~D~~~~R~~ln~~a~~~~iP~ 224 (722)
T PRK07877 183 DGLTEDNVDAFLD-GLDVVVEECDSLDVKVLLREAARARRIPV 224 (722)
T ss_pred ccCCHHHHHHHhc-CCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 4444444444432 35555555555544444433334444544
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.4 Score=36.66 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
...++|.|++|..|+.+++.+.+.|.+++ .++..... . ..+.+-+++.+.+ +-.|...++.+.++++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGAKVA--ILDRNQEK--A------EAVVAEIKAAGGEALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 45689999999999999999999998887 45543211 1 1111112211122 2456677788888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 80 ~~~~~~g~id~li~-~ag~ 97 (278)
T PRK08277 80 QILEDFGPCDILIN-GAGG 97 (278)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77764 6788887 5553
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.8 Score=35.91 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+++ .+..... .++++.+.. ++. +..|...++...+++.+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 69 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVA--ATVRRPD-----------ALDDLKARYGDRLWVLQLDVTDSAAVRAVVDR 69 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHhccCceEEEEccCCCHHHHHHHHHH
Confidence 4699999999999999999999998877 3333220 122222211 121 24677788888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..||. ..|.
T Consensus 70 ~~~~~~~id~vi~-~ag~ 86 (276)
T PRK06482 70 AFAALGRIDVVVS-NAGY 86 (276)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7664 4777777 5554
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.3 Score=34.76 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=48.0
Q ss_pred chhhhHHHH-HhCCceEEeeccCCCCCeEecCccccccHHHHH---hccCCcEEEEee----ChHHHHHHHHHHHHcCCC
Q 030169 71 GTFHTEQAI-EYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK---AETKANASVIYV----PPPFAAAAIMEAMEAELD 142 (182)
Q Consensus 71 G~~v~k~~~-~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~---~~~~~DvaVdfV----pp~av~~a~~eAie~GIk 142 (182)
|..++..++ ..|++++ ..| ++.+.+++. .+.++|++++.+ ....+.++++++-+.|.+
T Consensus 18 g~~iv~~~l~~~GfeVi-------~lg-------~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~ 83 (132)
T TIGR00640 18 GAKVIATAYADLGFDVD-------VGP-------LFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP 83 (132)
T ss_pred HHHHHHHHHHhCCcEEE-------ECC-------CCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCC
Confidence 344455444 6679888 323 444544443 245899998876 445666777777677763
Q ss_pred EE-EEeCCCCCHHHHHHHHHHh
Q 030169 143 LV-VCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 143 ~V-V~iTeG~~~eD~~~l~~~a 163 (182)
.+ |.+.-.+|.+|..++.++-
T Consensus 84 ~i~vivGG~~~~~~~~~l~~~G 105 (132)
T TIGR00640 84 DILVVVGGVIPPQDFDELKEMG 105 (132)
T ss_pred CCEEEEeCCCChHhHHHHHHCC
Confidence 32 3323347888888877754
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.6 Score=35.32 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=52.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... . ..+.+..+.. ++. +..|+..++.+.+++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVV--VNDLGEAG--A------EAAAKVATDAGGSVIYLVADVTKEDEIADMIAA 71 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 3699999999999999999999998888 55554311 0 0111111111 232 23577888888887777
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..|+. ..|.
T Consensus 72 ~~~~~~~~d~vi~-~a~~ 88 (255)
T TIGR01963 72 AAAEFGGLDILVN-NAGI 88 (255)
T ss_pred HHHhcCCCCEEEE-CCCC
Confidence 7653 5777776 4443
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.1 Score=40.26 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=54.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeec--cCCCCCe---EecCcccc-cc---HHHHHhc--cCCcEEEEeeC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV--TPKKGGT---EHLGLPVF-NS---VAEAKAE--TKANASVIYVP 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV--dp~~~G~---~i~GvPVy-~S---v~ea~~~--~~~DvaVdfVp 125 (182)
+..+++|+|+ |+.|+.+++.+.+.|.+++ .+ +|..... +..+++++ .+ .+.+.+. .++|+++..++
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~--vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVK--LIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEE--EEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence 3577999999 9999999999999888887 55 4432110 11245543 22 2222121 27898888877
Q ss_pred hHHHH-HHHHHHHHcCCCEEEEeC
Q 030169 126 PPFAA-AAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 126 p~av~-~a~~eAie~GIk~VV~iT 148 (182)
.+... .++..|.+.+.+.|+..+
T Consensus 307 ~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 307 DDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CcHHHHHHHHHHHHhCCCeEEEEE
Confidence 54333 334445666777666533
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.98 Score=36.97 Aligned_cols=83 Identities=19% Similarity=0.142 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+++ .++..... .. ...++ +++...+ +..|...++.+..+++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~--~~~r~~~~--~~-----~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVV--VGARRQAE--LD-----QLVAE-IRAEGGEAVALAGDVRDEAYAKALVA 75 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHH-HHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35699999999999999999999998888 44433211 10 01112 1111112 3357788888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|. ..|+
T Consensus 76 ~~~~~~~~id~li~-~ag~ 93 (254)
T PRK07478 76 LAVERFGGLDIAFN-NAGT 93 (254)
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 88775 6777777 5554
|
|
| >KOG1254 consensus ATP-citrate lyase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.29 Score=46.98 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=77.0
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-------eEecCccccccHHHHHhcc-CCcEEEEeeC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-------TEHLGLPVFNSVAEAKAET-KANASVIYVP 125 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-------~~i~GvPVy~Sv~ea~~~~-~~DvaVdfVp 125 (182)
++..++|.++.|- =+...+.+.+.--.++ |-+.+.... +...-+|||.+.++++.+| ..|+-+-|..
T Consensus 5 lfe~dtKAi~~~~----q~ravqlckr~~psVa-a~~~~~~~~lqk~~~g~kei~IPv~~t~~~a~~~hp~~dv~~~faS 79 (600)
T KOG1254|consen 5 LFEYDTKAIVWGM----QQRAVQLCKRHFPSVA-AIIYFTGDRLQKIYFGQKEILIPVEKTMENALVEHPEADVEPWFAS 79 (600)
T ss_pred hhhccchHhhhhh----hhhhhhhhhccCccce-eeecccccchhheecCCceEEeechhhHHHHHhcCcccceeechhh
Confidence 4566788888884 2233334443333344 444422211 1122599999988887665 7799999999
Q ss_pred hHHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 126 PPFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 126 p~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
-..|++-..++++. .+++|-++.||+|+.|..++..-+++-
T Consensus 80 ~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~k 121 (600)
T KOG1254|consen 80 TRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEVK 121 (600)
T ss_pred hhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhccccc
Confidence 99999999999998 488898889999999999998877653
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.4 Score=41.05 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=28.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP 92 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp 92 (182)
..+|+|||+ |+-|+.+++.+.+.|.+|| |-.|.
T Consensus 206 g~~VaIqGf-GnVG~~~A~~L~e~GakVV-aVsD~ 238 (410)
T PLN02477 206 GQTFVIQGF-GNVGSWAAQLIHEKGGKIV-AVSDI 238 (410)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEE-EEECC
Confidence 478999999 9999999999999999999 64443
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.4 Score=35.44 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=26.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV 86 (182)
+.+|+|.|++|..|+.+++.+.+.|. +++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~ 35 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVY 35 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEE
Confidence 46799999999999999999999997 777
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=2.1 Score=35.70 Aligned_cols=80 Identities=23% Similarity=0.246 Sum_probs=52.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~e 135 (182)
++|+|.|++|.+|+.+++.+.+.|.+|+ .++..... ++++.+.. .+ -+..|+..++.+.++++.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVV--ATARDTAT-----------LADLAEKYGDRLLPLALDVTDRAAVFAAVET 70 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEE--EEECCHHH-----------HHHHHHhccCCeeEEEccCCCHHHHHHHHHH
Confidence 4699999999999999999999898877 44433211 11221111 11 134677788888888777
Q ss_pred HHHc--CCCEEEEeCCCCC
Q 030169 136 AMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~~ 152 (182)
+.+. ++..+|. ..|+.
T Consensus 71 ~~~~~~~~d~vi~-~ag~~ 88 (275)
T PRK08263 71 AVEHFGRLDIVVN-NAGYG 88 (275)
T ss_pred HHHHcCCCCEEEE-CCCCc
Confidence 7654 5677776 66653
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.5 Score=37.35 Aligned_cols=91 Identities=25% Similarity=0.241 Sum_probs=55.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccccc-HHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNS-VAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~S-v~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
...++|.|+++..|..+++.+.+.|.+++..+.+....|..- +-.-... .+++.+ ...+ +..|...++.+.+++
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSAS-GGSAAQAVVDEIVA-AGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCcccccccc-chhHHHHHHHHHHh-cCCceEEEeCCCCCHHHHHHHH
Confidence 457999999999999999999999988872333321111000 0001111 222211 1122 235778888899999
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. .+..+|+ ..|+
T Consensus 84 ~~~~~~~g~id~lv~-nAG~ 102 (286)
T PRK07791 84 DAAVETFGGLDVLVN-NAGI 102 (286)
T ss_pred HHHHHhcCCCCEEEE-CCCC
Confidence 888865 5788877 6665
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.98 Score=42.10 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=26.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
+.+|+|+|+ |-.|.++++++.-.| .++. -+|+..
T Consensus 20 ~s~VlliG~-gglGsEilKNLvL~GIg~~t--IvD~~~ 54 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLVLPGIGSFT--IVDGSK 54 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHHHcCCCeEE--EECCCc
Confidence 578999999 669999999999999 3444 555554
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.8 Score=36.07 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=54.3
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~eA 136 (182)
+++|.|++|..|..+++.+.+.|.+++ .++..... . -...+++.... ... ...|...++.+.+++++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELF--LTDRDADG--L-----AQTVADARALGGTVPEHRALDISDYDAVAAFAADI 72 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHH
Confidence 589999999999999999999998877 44443211 0 01122221111 122 357888899998888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|.
T Consensus 73 ~~~~~~id~lv~-~ag~ 88 (272)
T PRK07832 73 HAAHGSMDVVMN-IAGI 88 (272)
T ss_pred HHhcCCCCEEEE-CCCC
Confidence 765 5777777 5554
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.7 Score=35.42 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=26.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEee
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGG 89 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~Ag 89 (182)
.+|+|.|++|..|+.+++.+.+.|.+++ +.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~-~~ 32 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVI-AG 32 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEE-EE
Confidence 4699999999999999999999998888 53
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.75 Score=37.88 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~eA 136 (182)
.+|+|.|++|..|+.+++.+.+.|.+++ ......... . -.. .+++... .+++ +..|+..++.+.++++++
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~-~~~~~~~~~--~--~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIG-ITWHSDEEG--A--KET---AEEVRSHGVRAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCCChHH--H--HHH---HHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4689999999999999999999998887 332222211 0 001 1121111 1222 246788889999998888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..+|+ ..|+
T Consensus 75 ~~~~~~id~li~-~ag~ 90 (256)
T PRK12743 75 IQRLGRIDVLVN-NAGA 90 (256)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 4677776 5554
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.6 Score=36.32 Aligned_cols=81 Identities=11% Similarity=0.141 Sum_probs=50.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc----CCc-EEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET----KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~----~~D-vaVdfVpp~av~~a~ 133 (182)
..++|.|++|.+|+.+++.+.+.|.+|+ .++..... . ..+.+...+. ++. +..|...++.+.+ +
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~ 72 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVI--ATMRNPEK--Q------ENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-F 72 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCCCceeEEecCCCCHHHHHH-H
Confidence 3589999999999999999999999888 33332211 1 1111111111 122 2457778888888 7
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..||. ..|.
T Consensus 73 ~~~~~~~~~id~vv~-~ag~ 91 (280)
T PRK06914 73 QLVLKEIGRIDLLVN-NAGY 91 (280)
T ss_pred HHHHHhcCCeeEEEE-CCcc
Confidence 776654 4666666 5554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.3 Score=42.99 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=55.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCC-cEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~-DvaVdfVpp~av~~a~~e 135 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... . ....+.+.. ..+ -+..|.+.++.+.+++++
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vv--l~~r~~~~--~------~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVV--LADLDEEA--A------EAAAAELGGPDRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEE--EEeCCHHH--H------HHHHHHHhccCcEEEEEecCCCHHHHHHHHHH
Confidence 46799999999999999999999998888 44443211 0 011111110 012 344577888888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..||. ..|+
T Consensus 492 ~~~~~g~iDvvI~-~AG~ 508 (681)
T PRK08324 492 AALAFGGVDIVVS-NAGI 508 (681)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7765 6888887 6664
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.7 Score=37.11 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ . +........ ...+.+.++....+ +-.|...++.+.++++
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~-i-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIA-L-NYLPEEEQD------AAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEE-E-EeCCcchHH------HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 35799999999999999999999998887 2 222111100 01122222211222 2356778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 127 ~~~~~~g~iD~lV~-nAg~ 144 (300)
T PRK06128 127 RAVKELGGLDILVN-IAGK 144 (300)
T ss_pred HHHHHhCCCCEEEE-CCcc
Confidence 87764 6888887 5554
|
|
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.18 Score=38.37 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=49.1
Q ss_pred ceEEEEccCCCCchhh--hHHHHHh-C-CceEEeeccCCCCCeEecCccc----cccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFH--TEQAIEY-G-TKMVVGGVTPKKGGTEHLGLPV----FNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v--~k~~~~~-g-~~IV~AgVdp~~~G~~i~GvPV----y~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
|||+|+|- | |++| +..+.+. . .+|++++=||+-... -..+++ ++.+.+..++.++|.+|+---...+.
T Consensus 1 MkVLviGs-G--gREHAia~~l~~s~~v~~v~~aPGN~G~~~~-~~~~~~~~~d~~~l~~~a~~~~idlvvvGPE~pL~~ 76 (100)
T PF02844_consen 1 MKVLVIGS-G--GREHAIAWKLSQSPSVEEVYVAPGNPGTAEL-GKNVPIDITDPEELADFAKENKIDLVVVGPEAPLVA 76 (100)
T ss_dssp EEEEEEES-S--HHHHHHHHHHTTCTTEEEEEEEE--TTGGGT-SEEE-S-TT-HHHHHHHHHHTTESEEEESSHHHHHT
T ss_pred CEEEEECC-C--HHHHHHHHHHhcCCCCCEEEEeCCCHHHHhh-ceecCCCCCCHHHHHHHHHHcCCCEEEECChHHHHH
Confidence 68999996 4 6665 4444433 2 466633334432110 011222 22255555567899999888888888
Q ss_pred HHHHHHHHcCCCEE
Q 030169 131 AAIMEAMEAELDLV 144 (182)
Q Consensus 131 ~a~~eAie~GIk~V 144 (182)
.+++.+.+.||+.+
T Consensus 77 Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 77 GLADALRAAGIPVF 90 (100)
T ss_dssp THHHHHHHTT-CEE
T ss_pred HHHHHHHHCCCcEE
Confidence 99999999998864
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=90.78 E-value=1 Score=37.49 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
.++++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...++.....++. +-.|...++.+.+++++.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~--~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVC--IVDLQDDL--GQ-----NVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 35699999999999999999999998888 44432211 00 0011111101121 346778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 89 ~~~~g~id~li~-~Ag~ 104 (280)
T PLN02253 89 VDKFGTLDIMVN-NAGL 104 (280)
T ss_pred HHHhCCCCEEEE-CCCc
Confidence 765 5777877 5554
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.74 Score=38.29 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=68.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe------cCccccc-cHHH-HHhccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH------LGLPVFN-SVAE-AKAETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i------~GvPVy~-Sv~e-a~~~~~~DvaVdfVpp~a 128 (182)
+..+|+|+|+ |++|...++.+.+.|.+|+ -|+|.... ++ ..+..-. ...+ -++ ++|+++..+....
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~--VIs~~~~~-~l~~l~~~~~i~~~~~~~~~~~l~--~adlViaaT~d~e 82 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIV--VISPELTE-NLVKLVEEGKIRWKQKEFEPSDIV--DAFLVIAATNDPR 82 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEE--EEcCCCCH-HHHHHHhCCCEEEEecCCChhhcC--CceEEEEcCCCHH
Confidence 4568999999 9999999999999998877 66665422 11 1122111 1111 133 6899888887777
Q ss_pred HHHHHHHHHHcCCCEE----------------------EEe-CCCCCHHHHHHHHHHhcc-cchhcchhhh
Q 030169 129 AAAAIMEAMEAELDLV----------------------VCI-TEGIPQHDMVINFTRVNI-LLVAFLNFIM 175 (182)
Q Consensus 129 v~~a~~eAie~GIk~V----------------------V~i-TeG~~~eD~~~l~~~ak~-ipv~~~~~~~ 175 (182)
....+.+..+.++..- |.| |.|-+..-..+|.+--+. +|=..+.|+-
T Consensus 83 lN~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~~~~ 153 (202)
T PRK06718 83 VNEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYDESYESYID 153 (202)
T ss_pred HHHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHHHHH
Confidence 6655544446665321 122 467777777666655544 4555555543
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=90.65 E-value=2.9 Score=36.02 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=62.7
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCc--cccccHHHHHhcc-CCcEEEEeeChHH
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGL--PVFNSVAEAKAET-KANASVIYVPPPF 128 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~Gv--PVy~Sv~ea~~~~-~~DvaVdfVpp~a 128 (182)
+.|..+++|+|+ |+-++.+++....-|++++ -+|+...-.. ..+. -++...++..... .-+.+++.++-..
T Consensus 97 ~~p~~~L~IfGa-G~va~~la~la~~lGf~V~--v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h~ 173 (246)
T TIGR02964 97 APPAPHVVLFGA-GHVGRALVRALAPLPCRVT--WVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLTHDHA 173 (246)
T ss_pred cCCCCEEEEECC-cHHHHHHHHHHhcCCCEEE--EEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEeCChH
Confidence 457789999999 9999999999999999998 6777653110 1111 1223345554432 3466677676333
Q ss_pred -HHHHHHHHH-HcCCCEEEEeC--------------CCCCHHHHHHH
Q 030169 129 -AAAAIMEAM-EAELDLVVCIT--------------EGIPQHDMVIN 159 (182)
Q Consensus 129 -v~~a~~eAi-e~GIk~VV~iT--------------eG~~~eD~~~l 159 (182)
=.+++..++ +....=|=.+. +|++++++++|
T Consensus 174 ~D~~~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~~~~~l~ri 220 (246)
T TIGR02964 174 LDLELCHAALRRGDFAYFGLIGSKTKRARFEHRLRARGVDPAQIARM 220 (246)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCCHHHHhhE
Confidence 346677777 34443443323 56666665554
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.6 Score=38.63 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=58.3
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hC--CceEEeecc--CCCCCeE--e-c-C--cccc----ccHHHHHhccCCcEEEEe
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YG--TKMVVGGVT--PKKGGTE--H-L-G--LPVF----NSVAEAKAETKANASVIY 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g--~~IV~AgVd--p~~~G~~--i-~-G--vPVy----~Sv~ea~~~~~~DvaVdf 123 (182)
+||+|+|++|+.|+.++..+.. .+ -+++ -++ +...|.. + + + ..|. +++.+.++ ++|++|+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~--L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELS--LYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEE--EEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEc
Confidence 5899999999999999986643 33 3455 433 3332211 1 1 1 2232 34455566 79999987
Q ss_pred eCh----------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Q 030169 124 VPP----------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157 (182)
Q Consensus 124 Vpp----------------~av~~a~~eAie~GIk~VV~iTeG~~~eD~~ 157 (182)
.-. ..+.++++...+++.+.+|++++. |..-+.
T Consensus 77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN-P~D~~t 125 (312)
T PRK05086 77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN-PVNTTV 125 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC-chHHHH
Confidence 653 155667777778898888876654 444333
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.82 Score=39.25 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++ . +++ +..|...++.+.+++++.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv--~~~R~~~~--~~-----~~~~~l-~--~v~~~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVI--VPARRPDV--AR-----EALAGI-D--GVEVVMLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHh-h--hCeEEEccCCCHHHHHHHHHHH
Confidence 35799999999999999999999999988 34432211 00 001111 1 122 345778888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 94 ~~~~~~iD~li~-nAg~ 109 (315)
T PRK06196 94 LDSGRRIDILIN-NAGV 109 (315)
T ss_pred HhcCCCCCEEEE-CCCC
Confidence 764 6788887 5554
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.3 Score=45.27 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=48.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe----EecCcccccc--HHHHHhccCCcEEEEeeCh-HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----EHLGLPVFNS--VAEAKAETKANASVIYVPP-PFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~----~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp-~av~ 130 (182)
.+||+|+|+ |+.|..+++.+.+.|.++. +.|...... +..|++++.. ..+-++ ++|++| ++|. ..-.
T Consensus 15 ~~~v~v~G~-G~sG~a~a~~L~~~G~~V~--~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~--~~d~vV-~Spgi~~~~ 88 (473)
T PRK00141 15 SGRVLVAGA-GVSGRGIAAMLSELGCDVV--VADDNETARHKLIEVTGVADISTAEASDQLD--SFSLVV-TSPGWRPDS 88 (473)
T ss_pred CCeEEEEcc-CHHHHHHHHHHHHCCCEEE--EECCChHHHHHHHHhcCcEEEeCCCchhHhc--CCCEEE-eCCCCCCCC
Confidence 357999998 9999999999999998777 666532211 1237777643 223233 567554 3431 1112
Q ss_pred HHHHHHHHcCCCE
Q 030169 131 AAIMEAMEAELDL 143 (182)
Q Consensus 131 ~a~~eAie~GIk~ 143 (182)
..+.+|.+.|++.
T Consensus 89 p~~~~a~~~gi~v 101 (473)
T PRK00141 89 PLLVDAQSQGLEV 101 (473)
T ss_pred HHHHHHHHCCCce
Confidence 3456666777654
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.5 Score=43.02 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.8
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
+..+--|+|+|+ |+.|..+++.+.+.|.++. |.|.+.
T Consensus 3 ~~~~~~~~v~G~-G~sG~s~a~~L~~~G~~v~--~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGL-GKTGLSVVRFLARQGIPFA--VMDSRE 39 (448)
T ss_pred cccCCeEEEEee-cHhHHHHHHHHHhCCCeEE--EEeCCC
Confidence 445666999999 9999998999999998877 666543
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.5 Score=36.35 Aligned_cols=82 Identities=10% Similarity=0.044 Sum_probs=53.4
Q ss_pred CceEEEEccC--CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~t--GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~ 134 (182)
...++|.|++ +..|+.+++.+.+.|.+|+ .++..... -..+++.... .+ =+.+|...++.+.++++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi--~~~r~~~~--------~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVI--YTYQNDRM--------KKSLQKLVDE-EDLLVECDVASDESIERAFA 75 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEE--EecCchHH--------HHHHHhhccC-ceeEEeCCCCCHHHHHHHHH
Confidence 3568999998 6899999999999999988 33332100 0112221111 11 23467788899999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 76 ~~~~~~g~iD~lv~-nAg~ 93 (252)
T PRK06079 76 TIKERVGKIDGIVH-AIAY 93 (252)
T ss_pred HHHHHhCCCCEEEE-cccc
Confidence 88764 4777776 5554
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.31 Score=43.06 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=64.0
Q ss_pred CceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCeE--------ecC--ccccccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGTE--------HLG--LPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~~--------i~G--vPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
..+++|+|+ |.+|+.++..+. ..+++-+ .-+++....-+ ..+ +.+|.+.++++. +.|+++..+|.
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v-~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDiVi~aT~s 202 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERV-RVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIE--EADIIVTVTNA 202 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEE-EEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHh--cCCEEEEccCC
Confidence 456999999 999999987665 4565555 45555431110 113 345888999887 89999999986
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCC---CCCHHHHHHHH
Q 030169 127 PFAAAAIMEAMEAELDLVVCITE---GIPQHDMVINF 160 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTe---G~~~eD~~~l~ 160 (182)
. ..-.. ++++.|.++.-+ .. +..|.|.+.+.
T Consensus 203 ~-~p~i~-~~l~~G~hV~~i-Gs~~p~~~E~~~~~~~ 236 (325)
T PRK08618 203 K-TPVFS-EKLKKGVHINAV-GSFMPDMQELPSEAIA 236 (325)
T ss_pred C-CcchH-HhcCCCcEEEec-CCCCcccccCCHHHHh
Confidence 6 44445 888999886544 33 55566654333
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.27 Score=40.09 Aligned_cols=83 Identities=14% Similarity=-0.023 Sum_probs=54.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC---------CeEe----cCccccccHHHHHh----c-cCCcEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG---------GTEH----LGLPVFNSVAEAKA----E-TKANAS 120 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~---------G~~i----~GvPVy~Sv~ea~~----~-~~~Dva 120 (182)
|+++|.|++| +|..+++.+.+.|.++++..-++... +..+ .++--..++.++++ + ..+|+.
T Consensus 1 m~vlVtGGtG-~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~l 79 (177)
T PRK08309 1 MHALVIGGTG-MLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLA 79 (177)
T ss_pred CEEEEECcCH-HHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 4689999986 77778999998898877223222110 0011 12222233444333 2 257999
Q ss_pred EEeeChHHHHHHHHHHHHcCCC
Q 030169 121 VIYVPPPFAAAAIMEAMEAELD 142 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk 142 (182)
+..++......++..|-+.|++
T Consensus 80 v~~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 80 VAWIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred EEeccccchhhHHHHHHHHccC
Confidence 9999999999999999999998
|
|
| >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.67 Score=41.84 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=58.8
Q ss_pred eEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCC------------------------C--eEecC---ccccc-
Q 030169 60 RVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKG------------------------G--TEHLG---LPVFN- 106 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~------------------------G--~~i~G---vPVy~- 106 (182)
||.|-|| |+.|+.+.+.+++. +++|| |.-|+... + -.++| +.|+.
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~iv-aind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVV-AINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEE-EEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEec
Confidence 5889999 99999999987754 48888 64433110 0 00112 23342
Q ss_pred -cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 -Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++.. ++.++|+++..+......+.+..++++|.+.|++
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~i 120 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 120 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEe
Confidence 344443 3347999999999999999999999999998887
|
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. |
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=2.4 Score=34.45 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=42.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+++ .++..... +. .++ .. .++ =+.+|+..++.+.+++.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~--~~~r~~~~-~~--------~~~-~~-~~~~~~~~D~~~~~~~~~~~~~ 66 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVL--GVARSRHP-SL--------AAA-AG-ERLAEVELDLSDAAAAAAWLAG 66 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEE--EEecCcch-hh--------hhc-cC-CeEEEEEeccCCHHHHHHHHHH
Confidence 4799999999999999999999998888 45443311 00 010 00 011 134677778878777666
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=1.9 Score=34.68 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=50.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+++ ..+..... +. ....+..... +++ ...|+..++.+.+++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi--~~~r~~~~-~~------~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 73 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVI--ATYFSGND-CA------KDWFEEYGFTEDQVRLKELDVTDTEECAEALAE 73 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEE--EEeCCcHH-HH------HHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3689999999999999999998898888 33332210 00 0011111111 122 23466777888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. .+..+|+ ..|.
T Consensus 74 ~~~~~~~id~vi~-~ag~ 90 (245)
T PRK12824 74 IEEEEGPVDILVN-NAGI 90 (245)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7654 5787887 5553
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.68 Score=42.15 Aligned_cols=88 Identities=13% Similarity=-0.002 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE------------e---------------c-C--ccccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE------------H---------------L-G--LPVFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~------------i---------------~-G--vPVy~ 106 (182)
+.||+|+|+ |-.|..+++.+...| .+|. .+|+...... + + + +-.++
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gvg~i~--ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGVGTIT--LIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 467999999 999999999999999 4555 5555432211 0 0 1 11222
Q ss_pred ------cHHHHHhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCCC
Q 030169 107 ------SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp~av~~-a~~eAie~GIk~VV~iTeG 150 (182)
++.++++ ++|++++.+-...+.. +-+.|.+.++|.|.+-..|
T Consensus 118 ~~i~~~~~~~~~~--~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 118 ERLTAENAVELLN--GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred eecCHHHHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 1334444 6788877776555543 3355667788877664433
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.17 Score=48.22 Aligned_cols=102 Identities=20% Similarity=0.187 Sum_probs=62.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCe-E----ecCc----cccccHHHHHhccCCcEEEEee---
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGT-E----HLGL----PVFNSVAEAKAETKANASVIYV--- 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~-~----i~Gv----PVy~Sv~ea~~~~~~DvaVdfV--- 124 (182)
..+|+|+|+ |.||+.+++.+...|. +|+ .+++....- . ..+. ..++++.+++. ++|+++..+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~--V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~--~aDVVIsAT~s~ 340 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMV--VVNRSEERVAALREEFPDVEIIYKPLDEMLACAA--EADVVFTSTSSE 340 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEE--EEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHh--cCCEEEEccCCC
Confidence 467999999 9999999999998885 566 455542110 1 1122 12445666666 799988885
Q ss_pred ChHHHHHHHHHHHHc----CCCEE-EEeC------------CCCCHHHHHHHHHHhc
Q 030169 125 PPPFAAAAIMEAMEA----ELDLV-VCIT------------EGIPQHDMVINFTRVN 164 (182)
Q Consensus 125 pp~av~~a~~eAie~----GIk~V-V~iT------------eG~~~eD~~~l~~~ak 164 (182)
+|-...+.++.+... |-+.+ |=++ +|+..-|++.|.+.+.
T Consensus 341 ~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l~~v~lydiDdL~~i~~ 397 (519)
T PLN00203 341 TPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSELESARVYNVDDLKEVVA 397 (519)
T ss_pred CCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccCCCCeEEEeccHHHHHH
Confidence 344455666666532 23333 2222 5666666666666553
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.5 Score=36.60 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=55.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~~e 135 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++... . . -...+++.+.. ++ -+..|...++.+..++++
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi--~~~r~~-~--~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVL--AVDIAE-A--V-----SETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCcH-H--H-----HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 45799999999999999999999999988 444331 1 0 01122221110 12 245778888888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 76 ~~~~~g~id~li~-~Ag~ 92 (272)
T PRK08589 76 IKEQFGRVDVLFN-NAGV 92 (272)
T ss_pred HHHHcCCcCEEEE-CCCC
Confidence 8865 4777776 5454
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=2 Score=34.87 Aligned_cols=84 Identities=17% Similarity=0.053 Sum_probs=50.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eAi 137 (182)
++|+|.|++|..|+.+++.+.+.|.+++ ..+...... . -.++..+++.. .++ -+..|...++...++++++.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~-~~~~~~~~~--~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVG-INYARDAAA--A--EETADAVRAAG--GRACVVAGDVANEADVIAMFDAVQ 75 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeCCCHHH--H--HHHHHHHHhcC--CcEEEEEeccCCHHHHHHHHHHHH
Confidence 4699999999999999999999998877 333222111 0 01111111100 011 23356667778888887776
Q ss_pred Hc--CCCEEEEeCCC
Q 030169 138 EA--ELDLVVCITEG 150 (182)
Q Consensus 138 e~--GIk~VV~iTeG 150 (182)
+. .+..+|+ ..|
T Consensus 76 ~~~~~id~li~-~ag 89 (248)
T PRK06947 76 SAFGRLDALVN-NAG 89 (248)
T ss_pred HhcCCCCEEEE-CCc
Confidence 54 4777776 444
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=2.7 Score=33.93 Aligned_cols=84 Identities=11% Similarity=0.083 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ ..+.+.... . .+.+.+..+ .+.+ ...|...+....++++
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~-~~~~~~~~~--~-----~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 76 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVV-VNAKKRAEE--M-----NETLKMVKE-NGGEGIGVLADVSTREGCETLAK 76 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEE-EEeCCChHH--H-----HHHHHHHHH-cCCeeEEEEeccCCHHHHHHHHH
Confidence 35799999999999999999999998877 433332210 1 111222111 1112 2356777777777777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..||. ..|+
T Consensus 77 ~~~~~~~~~d~vi~-~ag~ 94 (252)
T PRK06077 77 ATIDRYGVADILVN-NAGL 94 (252)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77654 5777776 6664
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.55 Score=42.38 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.2
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
||.|+|+ |+.|..+++.+.+.|.+|. |.|.+
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~~~G~~V~--~sD~~ 31 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLHKKGAEVT--VTDLK 31 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHHHCCCEEE--EEeCC
Confidence 5789998 9999988999999999888 66644
|
|
| >PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.82 Score=37.03 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=47.1
Q ss_pred cCCceEEEEccCCCCchhhhHHHHH-hC-CceEEeeccCCCCCeEecC--ccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIE-YG-TKMVVGGVTPKKGGTEHLG--LPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~-~g-~~IV~AgVdp~~~G~~i~G--vPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
....+|+++|| |.-|..+...+-- .. ...+ ...||.+-|.-..| +||++.= ++.+ ..+|.++++ ++....+
T Consensus 66 ~~gk~I~~yGA-~~kg~tlln~~g~~~~~I~~v-vD~np~K~G~~~PGt~ipI~~p~-~l~~-~~pd~vivl-aw~y~~E 140 (160)
T PF08484_consen 66 AEGKRIAGYGA-GAKGNTLLNYFGLDNDLIDYV-VDDNPLKQGKYLPGTHIPIVSPE-ELKE-RKPDYVIVL-AWNYKDE 140 (160)
T ss_dssp HTT--EEEE----SHHHHHHHHHT--TTTS--E-EES-GGGTTEE-TTT--EEEEGG-G--S-S--SEEEES--GGGHHH
T ss_pred HcCCEEEEECc-chHHHHHHHHhCCCcceeEEE-EeCChhhcCcccCCCCCeECCHH-HHhh-CCCCEEEEc-ChhhHHH
Confidence 45577999999 7777777666552 22 4445 58899999977764 9998763 3333 378998774 4677777
Q ss_pred HHH---HHHHcCCCEEEE
Q 030169 132 AIM---EAMEAELDLVVC 146 (182)
Q Consensus 132 a~~---eAie~GIk~VV~ 146 (182)
+.+ +..+.|-+.|+.
T Consensus 141 I~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 141 IIEKLREYLERGGKFIVP 158 (160)
T ss_dssp HHHHTHHHHHTT-EEEE-
T ss_pred HHHHHHHHHhcCCEEEEe
Confidence 664 445678777765
|
; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.5 Score=38.61 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=51.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCC---CeEe-----------c-CccccccHHHHHhccCCcEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKG---GTEH-----------L-GLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~---G~~i-----------~-GvPVy~Sv~ea~~~~~~DvaV 121 (182)
++||.|+|+ |.||..++..+...|. +++ .+|.... |+.. . -+....+.++ .+ ++|+++
T Consensus 1 ~~KV~VIGa-G~vG~~iA~~la~~g~~~Vv--lvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~--~aDiVI 74 (305)
T TIGR01763 1 RKKISVIGA-GFVGATTAFRLAEKELADLV--LLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TA--NSDIVV 74 (305)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCCeEE--EEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hC--CCCEEE
Confidence 368999998 9999999998888773 766 6666321 1100 0 1222345655 44 689999
Q ss_pred EeeCh----------------HHHHHHHHHHHHcCCCEEEE
Q 030169 122 IYVPP----------------PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 122 dfVpp----------------~av~~a~~eAie~GIk~VV~ 146 (182)
++++. ..+.++++...+++-+.+++
T Consensus 75 itag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iI 115 (305)
T TIGR01763 75 ITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIV 115 (305)
T ss_pred EcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 98872 34445555556665555444
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.83 Score=41.19 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=27.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK 93 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~ 93 (182)
++.||+|+|+ |..|..+++.+...| .+|. -+|+.
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~--lvD~d 168 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLG--IVDHD 168 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEE--EEeCC
Confidence 4678999999 999999999999999 4555 66665
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=1.8 Score=37.25 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|..+++.+.+.|.+++ .++..... ..-...+++ +.... -.-.|...++.+.++++
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv--~~~~~~~~------~~~~~~~~i-~~~g~~~~~~~~Dv~d~~~~~~~~~ 82 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGATVV--VNDVASAL------DASDVLDEI-RAAGAKAVAVAGDISQRATADELVA 82 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EecCCchh------HHHHHHHHH-HhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 35699999999999999999999998888 33332111 000111222 11111 23346677888888888
Q ss_pred HHHHc-CCCEEEEeCCCCC
Q 030169 135 EAMEA-ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~ 152 (182)
++.+. ++..+|+ ..|+.
T Consensus 83 ~~~~~g~iD~li~-nAG~~ 100 (306)
T PRK07792 83 TAVGLGGLDIVVN-NAGIT 100 (306)
T ss_pred HHHHhCCCCEEEE-CCCCC
Confidence 77764 4777777 66653
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.09 E-value=1.5 Score=39.85 Aligned_cols=83 Identities=18% Similarity=0.070 Sum_probs=55.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
+.+++|.|++|-.|+.+++.+.+.|.+|+ .++..... . ..+.+.+.+...+ +..|...++.+.++++
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGAEVV--ASDIDEAA--A------ERTAELIRAAGAVAHAYRVDVSDADAMEAFAE 384 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 46799999999999999999999998877 44443211 0 1111111111111 2467788899999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 385 ~~~~~~g~id~lv~-~Ag~ 402 (582)
T PRK05855 385 WVRAEHGVPDIVVN-NAGI 402 (582)
T ss_pred HHHHhcCCCcEEEE-CCcc
Confidence 88765 4788887 6665
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.4 Score=35.53 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=28.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..
T Consensus 6 k~~lVtGas~~iG~~ia~~l~~~G~~v~--~~~r~ 38 (235)
T PRK06550 6 KTVLITGAASGIGLAQARAFLAQGAQVY--GVDKQ 38 (235)
T ss_pred CEEEEcCCCchHHHHHHHHHHHCCCEEE--EEeCC
Confidence 5689999999999999999999998888 44443
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.62 Score=43.86 Aligned_cols=30 Identities=30% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEe
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVG 88 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~A 88 (182)
+..||+|||+ |+.|+..++.+.+.|.+|| +
T Consensus 227 ~g~~vaIQGf-GnVG~~aA~~L~e~GakvV-a 256 (445)
T PRK14030 227 KGKTVAISGF-GNVAWGAATKATELGAKVV-T 256 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-E
Confidence 3578999999 9999999999999999999 5
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=2 Score=34.75 Aligned_cols=79 Identities=10% Similarity=0.031 Sum_probs=52.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eAi 137 (182)
.+++|.|++|..|+.+++.+.+.|.+|+ .++..... . .+++ ++.++ =+..|...++.+.+++++..
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~-------~---~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 69 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVI--VSYRTHYP-------A---IDGL-RQAGAQCIQADFSTNAGIMAFIDELK 69 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEE--EEeCCchh-------H---HHHH-HHcCCEEEEcCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999988 44443211 1 1221 11111 13456777888888888777
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|. ..|+
T Consensus 70 ~~~~~id~lv~-~ag~ 84 (236)
T PRK06483 70 QHTDGLRAIIH-NASD 84 (236)
T ss_pred hhCCCccEEEE-CCcc
Confidence 64 4777777 4443
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=3.1 Score=34.13 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc--cCCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~--~~~D-vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+++ ......... . ..+.+.+.. .+++ +..|...++.+.++++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~~v~-~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 79 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGFDVA-VHYNRSRDE--A------EALAAEIRALGRRAVALQADLADEAEVRALVA 79 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCCCHHH--H------HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 45799999999999999999999998887 433322111 0 111111111 1222 3346777888888877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 80 ~~~~~~~~iD~vi~-~ag~ 97 (258)
T PRK09134 80 RASAALGPITLLVN-NASL 97 (258)
T ss_pred HHHHHcCCCCEEEE-CCcC
Confidence 77653 5777777 5554
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.3 Score=39.58 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=66.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEe-eccCCCCCeE-ecCccccccHHHHHhcc-CCcEEEEeeChH-HHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVG-GVTPKKGGTE-HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~A-gVdp~~~G~~-i~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~-av~~a~~ 134 (182)
+++-++|. ||||..+++.+++.|-++| + .+||.....- -.|...-.|++|++... .|.++-+-||+. .+..+++
T Consensus 1 M~iGmiGL-GrMG~n~v~rl~~~ghdvV-~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~ 78 (300)
T COG1023 1 MQIGMIGL-GRMGANLVRRLLDGGHDVV-GYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID 78 (300)
T ss_pred Ccceeecc-chhhHHHHHHHHhCCCeEE-EEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH
Confidence 35778898 9999999999999999999 3 3444331100 13677788888888765 678888889988 5555555
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 135 EAMEA-ELDLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
+.-.. .---||+=.-.---+|..+-.+..++--|.
T Consensus 79 ~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~ 114 (300)
T COG1023 79 DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH 114 (300)
T ss_pred HHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe
Confidence 54333 222244312222234444444444443333
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=2.5 Score=34.19 Aligned_cols=83 Identities=14% Similarity=0.043 Sum_probs=51.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
.++++|.|++|..|+.+++.+.+.|.+++ ....+.. . . .-...++.... .++. +..|...++.+..++++
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~-~~~~r~~-~-~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGYDIA-VNYARSR-K-A-----AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQ 75 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEcCCCH-H-H-----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999999999998877 4333322 1 0 11112221111 0111 33566777777777777
Q ss_pred HHHc--CCCEEEEeC
Q 030169 136 AMEA--ELDLVVCIT 148 (182)
Q Consensus 136 Aie~--GIk~VV~iT 148 (182)
..+. ++..+|+.+
T Consensus 76 ~~~~~~~id~vi~~a 90 (250)
T PRK08063 76 IDEEFGRLDVFVNNA 90 (250)
T ss_pred HHHHcCCCCEEEECC
Confidence 6654 577787733
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.1 Score=40.61 Aligned_cols=72 Identities=26% Similarity=0.216 Sum_probs=54.6
Q ss_pred CCceEEEEccCCCCc---------hhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 57 KNTRVICQGITGKNG---------TFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 57 ~~trViVvG~tGkmG---------~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
+..+|+|.|.+=|-+ ..+++.+.+.|.+|. ..||.........++.+.+++|+.+ +.|++|+.+..+
T Consensus 312 ~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~--~~DP~~~~~~~~~~~~~~~~~~~~~--~ad~~v~~t~~~ 387 (411)
T TIGR03026 312 KGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVK--AYDPLVPEEEVKGLPLIDDLEEALK--GADALVILTDHD 387 (411)
T ss_pred cCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEE--EECCCCChhhhhhcccCCCHHHHHh--CCCEEEEecCCH
Confidence 457899999985555 355788889998888 8999864433334555688988888 899999999988
Q ss_pred HHHHH
Q 030169 128 FAAAA 132 (182)
Q Consensus 128 av~~a 132 (182)
.-.+.
T Consensus 388 ~~~~~ 392 (411)
T TIGR03026 388 EFKDL 392 (411)
T ss_pred HHhcc
Confidence 76544
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=2.2 Score=36.35 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=51.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|..+++.+.+.|.+++ .++..... ... ..++..+....+ +..|....+...++++
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~--l~~r~~~~----~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIA--IVYLDEHE----DAN---ETKQRVEKEGVKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCcch----HHH---HHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 46799999999999999999999998877 44333211 011 112222211222 3456777888888877
Q ss_pred HHHHc--CCCEEEE
Q 030169 135 EAMEA--ELDLVVC 146 (182)
Q Consensus 135 eAie~--GIk~VV~ 146 (182)
+..+. ++..+|.
T Consensus 117 ~i~~~~~~iD~lI~ 130 (290)
T PRK06701 117 ETVRELGRLDILVN 130 (290)
T ss_pred HHHHHcCCCCEEEE
Confidence 77664 5777776
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.3 Score=37.90 Aligned_cols=88 Identities=16% Similarity=0.025 Sum_probs=54.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE------------e----------------cCc---ccccc
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE------------H----------------LGL---PVFNS 107 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~------------i----------------~Gv---PVy~S 107 (182)
||+|+|+ |..|..+++.+...| .+|. .+|+...... + .++ +....
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~--ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIH--VIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEE--EEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 6899998 999999999999888 4454 4444332211 0 011 11122
Q ss_pred H-------HHHHhccCCcEEEEeeChHHHH-HHHHHHHHcCCCEEEEeCCCCC
Q 030169 108 V-------AEAKAETKANASVIYVPPPFAA-AAIMEAMEAELDLVVCITEGIP 152 (182)
Q Consensus 108 v-------~ea~~~~~~DvaVdfVpp~av~-~a~~eAie~GIk~VV~iTeG~~ 152 (182)
+ .+..+ ++|++++.+-.-.+. -+-+.|.+.++|.|-+-|+|+.
T Consensus 78 i~~~~~~~~~f~~--~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~ 128 (234)
T cd01484 78 VGPEQDFNDTFFE--QFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFK 128 (234)
T ss_pred CChhhhchHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCc
Confidence 2 22334 688888876555554 4556667778888877666653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=1.7 Score=37.98 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=59.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC---------CCeEe------cCccccccHHHHHhccCCcEEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK---------GGTEH------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~---------~G~~i------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
.+||+|+|+ |.+|..+.-.+.+.|.++. .+++.. .|-.+ ..+|+.....+..+ .+|.+++
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~~V~--lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~--~~D~viv 76 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGLPVR--LILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAE--PIHRLLL 76 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCCCeE--EEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccccc--ccCEEEE
Confidence 478999999 9999999998888886665 444431 12111 11222222222122 6899999
Q ss_pred eeChHHHHHHHHHHHHc-CCC-EEEEeCCCCCHHHH
Q 030169 123 YVPPPFAAAAIMEAMEA-ELD-LVVCITEGIPQHDM 156 (182)
Q Consensus 123 fVpp~av~~a~~eAie~-GIk-~VV~iTeG~~~eD~ 156 (182)
+|-.....+++...... +-. .|+.+--|+..++.
T Consensus 77 ~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~ 112 (305)
T PRK05708 77 ACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDA 112 (305)
T ss_pred ECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHH
Confidence 99998888877665442 222 35555788876553
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.55 Score=39.98 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc---cCCc-EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE---TKAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~---~~~D-vaVdfVpp~av~~a~ 133 (182)
.++|+|.|++|..|+.+++.+.+.|.+++ .+...... . -.. .+++.+. .++. +.+|...++.+..++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~~vi--~~~r~~~~--~--~~~---~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGAHVV--LAVRNLDK--G--KAA---AARITAATPGADVTLQELDLTSLASVRAAA 86 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEE--EEeCCHHH--H--HHH---HHHHHHhCCCCceEEEECCCCCHHHHHHHH
Confidence 46799999999999999999999998887 34332211 0 011 1222211 1122 245777888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|. ..|+
T Consensus 87 ~~~~~~~~~iD~li~-nAg~ 105 (306)
T PRK06197 87 DALRAAYPRIDLLIN-NAGV 105 (306)
T ss_pred HHHHhhCCCCCEEEE-CCcc
Confidence 888765 5787877 5554
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.8 Score=39.54 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+...++|.|+++..|..+++.+.+.|.+|+ .++..... ++++.++...+ +.+|...++.+.+++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 70 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVV--VADRNVER-----------ARERADSLGPDHHALAMDVSDEAQIREGF 70 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH-----------HHHHHHHhCCceeEEEeccCCHHHHHHHH
Q ss_pred HHHHHc--CCCEEEEeCCCC--------CHHHHHHHHHHhcccchhcchhhhhhhccC
Q 030169 134 MEAMEA--ELDLVVCITEGI--------PQHDMVINFTRVNILLVAFLNFIMKLTRNW 181 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~--------~~eD~~~l~~~ak~ipv~~~~~~~~~~~~~ 181 (182)
++..+. ++..+|+ ..|+ .+.+.+++.+.-+..-.+..+++..+.+.+
T Consensus 71 ~~~~~~~g~iD~li~-nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 127 (520)
T PRK06484 71 EQLHREFGRIDVLVN-NAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLM 127 (520)
T ss_pred HHHHHHhCCCCEEEE-CCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHH
|
|
| >PLN02237 glyceraldehyde-3-phosphate dehydrogenase B | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.55 Score=44.23 Aligned_cols=87 Identities=13% Similarity=-0.023 Sum_probs=61.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCC------------------------eE--ec--Ccccccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGG------------------------TE--HL--GLPVFNS 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G------------------------~~--i~--GvPVy~S 107 (182)
+||.|-|| ||.|+.+.+.+.+. +++|| |--|+.... +. ++ .+.|+..
T Consensus 76 ikVgINGF-GRIGR~vlR~~~~~~~~~ievV-aINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~ 153 (442)
T PLN02237 76 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-VVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSN 153 (442)
T ss_pred EEEEEECC-ChHHHHHHHHHHHccCCCeEEE-EECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEc
Confidence 78999999 99999999986643 58999 633221100 00 11 2444432
Q ss_pred --HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 108 --VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 108 --v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iT 148 (182)
.++.. .+.++|+++..+......+.+...+++|.+.|++ +
T Consensus 154 ~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~i-S 196 (442)
T PLN02237 154 RDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII-T 196 (442)
T ss_pred CCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEE-C
Confidence 33443 2358999999999999999999999999999887 5
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=2.5 Score=37.48 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=55.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCC---CeEe--------c----CccccccHHHHHhccCCcEE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKG---GTEH--------L----GLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~---G~~i--------~----GvPVy~Sv~ea~~~~~~Dva 120 (182)
+..||.|+|+ |.+|..++..+...| .+|+ -+|.... |... . .+....+.+ +.+ ++|++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~--L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~--~ADiV 77 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVV--LYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK--DSDVV 77 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEE--EEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC--CCCEE
Confidence 4579999998 999999988877777 5655 6665431 1110 1 122234455 345 68888
Q ss_pred EEee--Ch--------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 121 VIYV--PP--------------PFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 121 VdfV--pp--------------~av~~a~~eAie~GIk~VV~iTeG 150 (182)
|+.. |. ....+.++..-+...+.++++.++
T Consensus 78 Vitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 78 VITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 8887 22 446677777777776764444443
|
|
| >PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.63 Score=44.26 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=60.4
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh-----CCceEEeeccCCCCCeE-------------------------------e
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY-----GTKMVVGGVTPKKGGTE-------------------------------H 99 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~-----g~~IV~AgVdp~~~G~~-------------------------------i 99 (182)
....||.|.|| ||.|+.+.+.+.+. +++|| |-++.+....+ +
T Consensus 125 ~~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lv-AIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~lii 202 (477)
T PRK08289 125 IEPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLR-AIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIA 202 (477)
T ss_pred CCCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEE-EEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEE
Confidence 34679999999 99999999987754 58899 66432111101 0
Q ss_pred cC--cccccc--HHHHH-hccCCc--EEEEeeChHHHHHHHHHHHH-cCCCEEEE
Q 030169 100 LG--LPVFNS--VAEAK-AETKAN--ASVIYVPPPFAAAAIMEAME-AELDLVVC 146 (182)
Q Consensus 100 ~G--vPVy~S--v~ea~-~~~~~D--vaVdfVpp~av~~a~~eAie-~GIk~VV~ 146 (182)
+| ++++.. +++++ .+.++| ++|+.+..-.-.+-+..=++ +|.+.|++
T Consensus 203 ng~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkVii 257 (477)
T PRK08289 203 NGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLL 257 (477)
T ss_pred CCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEE
Confidence 11 333332 55554 345789 99999888777777777777 79888886
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.92 Score=36.58 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=28.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
+..+++|.|++|.+|+.+++.+.+.|.+++ .+++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~--l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVV--LVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEcCC
Confidence 347899999999999999999998887777 44443
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.3 Score=38.71 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=61.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCeE---ecCcccccc-HHHHHhcc---CCcEEEEeeC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGTE---HLGLPVFNS-VAEAKAET---KANASVIYVP 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~~---i~GvPVy~S-v~ea~~~~---~~DvaVdfVp 125 (182)
...||+|+|- |+.|+-+.-.++..| .... -|+||+.+|-. -.|+|--+- ++.++... ++|.+.+.+.
T Consensus 3 sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~m-vgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdats 80 (310)
T COG4569 3 SKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVM-VGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATS 80 (310)
T ss_pred CcceEEEEcc-CcccHHHHHHHHhcCCcccceeE-EccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccc
Confidence 4578999996 999998855555444 3333 39999987721 136765554 55554432 4568888888
Q ss_pred hHHHHHHHHHHHHcCCCEEE
Q 030169 126 PPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV 145 (182)
+.+..+++-...|.||+.|=
T Consensus 81 a~~h~~~a~~~ae~gi~~id 100 (310)
T COG4569 81 AGAHVKNAAALAEAGIRLID 100 (310)
T ss_pred cchhhcchHhHHhcCCceee
Confidence 88888888888999999873
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.72 Score=39.66 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=53.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
+..+|+|+|+ |-.|...++.++.+|.+.+ ..++......+ .....+++.-++ ....+|++++.+......+.+.+
T Consensus 144 ~~~~vlV~G~-G~vG~~a~q~ak~~G~~~v-~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G~~~~~~~~~~ 219 (308)
T TIGR01202 144 KVLPDLIVGH-GTLGRLLARLTKAAGGSPP-AVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASGDPSLIDTLVR 219 (308)
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCCceE-EEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCCCHHHHHHHHH
Confidence 3456999996 9999999999999998865 45554321111 112233433222 22368999999998766566666
Q ss_pred HHHcCCCEE
Q 030169 136 AMEAELDLV 144 (182)
Q Consensus 136 Aie~GIk~V 144 (182)
++..+=+.+
T Consensus 220 ~l~~~G~iv 228 (308)
T TIGR01202 220 RLAKGGEIV 228 (308)
T ss_pred hhhcCcEEE
Confidence 666654444
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=89.44 E-value=2.1 Score=38.11 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=28.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeec
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV 90 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV 90 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ +.+
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~-~~~ 84 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVR-IAV 84 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEE-EEe
Confidence 46799999999999999999999998887 544
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.73 Score=41.64 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=60.0
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHHHHH
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~eAi 137 (182)
.+|.|+|+..|+..++++.+.|+++| -+....+- .. ..-+|+.+++++ =+++||..++.+++.+++-+
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~nvv--LIsRt~~K--L~-----~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l 122 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGFNVV--LISRTQEK--LE-----AVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKL 122 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHh
Confidence 67889999999999999999999988 77776622 21 223444444443 36789999999999998888
Q ss_pred Hc-CCCEEEEeCCCCC
Q 030169 138 EA-ELDLVVCITEGIP 152 (182)
Q Consensus 138 e~-GIk~VV~iTeG~~ 152 (182)
+. .|-..|+ --|..
T Consensus 123 ~~~~VgILVN-NvG~~ 137 (312)
T KOG1014|consen 123 AGLDVGILVN-NVGMS 137 (312)
T ss_pred cCCceEEEEe-ccccc
Confidence 76 4666665 44433
|
|
| >PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length | Back alignment and domain information |
|---|
Probab=89.37 E-value=1.6 Score=32.07 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=50.7
Q ss_pred hCCceEEeeccCCCCCeEecCcccccc-HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030169 81 YGTKMVVGGVTPKKGGTEHLGLPVFNS-VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 81 ~g~~IV~AgVdp~~~G~~i~GvPVy~S-v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l 159 (182)
-+.+++ .|-+... ..+..+-|... ++++.+..+.+.+++..--. .|+...|++++++.++. |.|.++++...=
T Consensus 6 L~~~~l-~g~~~~~--~~~~~v~v~a~~~~~~~~~~~~~~lvIt~gdR--~di~~~a~~~~i~~iIl-tg~~~~~~~v~~ 79 (105)
T PF07085_consen 6 LDGEVL-NGGEELD--RRVGKVVVGAMSLSDFLEYLKPGDLVITPGDR--EDIQLAAIEAGIACIIL-TGGLEPSEEVLE 79 (105)
T ss_dssp TT-EEE-E--TTS----EESEEEE-SS-HHHHHHCHHTTEEEEEETT---HHHHHHHCCTTECEEEE-ETT----HHHHH
T ss_pred cCCEEE-ECCcccc--eEEeeEEEEECCHHHHHhhcCCCeEEEEeCCc--HHHHHHHHHhCCCEEEE-eCCCCCCHHHHH
Confidence 456777 6655444 23666777777 77777765667766664333 78889999999999998 887777665444
Q ss_pred HHHhcccchhcchh
Q 030169 160 FTRVNILLVAFLNF 173 (182)
Q Consensus 160 ~~~ak~ipv~~~~~ 173 (182)
..-.+.+||=+.++
T Consensus 80 la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 80 LAKELGIPVISTPY 93 (105)
T ss_dssp HHHHHT-EEEE-SS
T ss_pred HHHHCCCEEEEECC
Confidence 44444588766554
|
It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 182 | ||||
| 2fp4_A | 305 | Crystal Structure Of Pig Gtp-Specific Succinyl-Coa | 1e-28 | ||
| 2fpg_A | 305 | Crystal Structure Of Pig Gtp-Specific Succinyl-Coa | 1e-28 | ||
| 1eud_A | 311 | Crystal Structure Of Phosphorylated Pig Heart, Gtp- | 1e-28 | ||
| 1euc_A | 311 | Crystal Structure Of Dephosphorylated Pig Heart, Gt | 2e-28 | ||
| 2nu7_A | 288 | C123as Mutant Of E. Coli Succinyl-Coa Synthetase Le | 9e-23 | ||
| 2nua_A | 288 | C123av Mutant Of E. Coli Succinyl-Coa Synthetase Le | 9e-23 | ||
| 2nu8_A | 288 | C123at Mutant Of E. Coli Succinyl-Coa Synthetase Le | 9e-23 | ||
| 2nu9_A | 288 | C123at Mutant Of E. Coli Succinyl-Coa Synthetase Or | 1e-22 | ||
| 2nu6_A | 288 | C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Le | 1e-22 | ||
| 1cqi_A | 286 | Crystal Structure Of The Complex Of Adp And Mg2+ Wi | 1e-22 | ||
| 1jkj_A | 288 | E. Coli Scs Length = 288 | 1e-22 | ||
| 2scu_A | 288 | A Detailed Description Of The Structure Of Succinyl | 1e-22 | ||
| 2yv1_A | 294 | Crystal Structure Of Succinyl-Coa Synthetase Alpha | 4e-17 | ||
| 2yv2_A | 297 | Crystal Structure Of Succinyl-Coa Synthetase Alpha | 1e-16 | ||
| 3ufx_A | 296 | Thermus Aquaticus Succinyl-coa Synthetase In Comple | 1e-14 | ||
| 1oi7_A | 288 | The Crystal Structure Of Succinyl-Coa Synthetase Al | 3e-14 |
| >pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 305 | Back alignment and structure |
|
| >pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gdp Length = 305 | Back alignment and structure |
|
| >pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 311 | Back alignment and structure |
|
| >pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 311 | Back alignment and structure |
|
| >pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Orthorhombic Crystal Form Length = 288 | Back alignment and structure |
|
| >pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 286 | Back alignment and structure |
|
| >pdb|1JKJ|A Chain A, E. Coli Scs Length = 288 | Back alignment and structure |
|
| >pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa Synthetase From Escherichia Coli Length = 288 | Back alignment and structure |
|
| >pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Methanocaldococcus Jannaschii Dsm 2661 Length = 294 | Back alignment and structure |
|
| >pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Aeropyrum Pernix K1 Length = 297 | Back alignment and structure |
|
| >pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 296 | Back alignment and structure |
|
| >pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha Subunit From Thermus Thermophilus Length = 288 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 182 | |||
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 1e-74 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 6e-74 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 8e-74 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 4e-73 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 2e-72 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 5e-57 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 2e-51 | |
| 3dmy_A | 480 | Protein FDRA; predicted actyl-COA synthetase, nysg | 8e-30 |
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Length = 305 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 1e-74
Identities = 81/113 (71%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +V GG TP KGG HLGLPV
Sbjct: 1 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLV-GGTTPGKGGKTHLGLPV 59
Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 60 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 112
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Length = 288 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 6e-74
Identities = 70/106 (66%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMV GGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREA 59
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 60 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Length = 294 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 8e-74
Identities = 59/106 (55%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+ +D+NT+ I QGITG+ G+FHT++ +E GTK+V GGVTP KGG G+PVF++V EA
Sbjct: 7 MILLDENTKAIVQGITGRQGSFHTKKMLECGTKIV-GGVTPGKGGQNVHGVPVFDTVKEA 65
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
ET ANASVI+VP PFA A+ EA++A ++L+V ITE IP HD +
Sbjct: 66 VKETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTM 111
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Length = 288 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 4e-73
Identities = 58/105 (55%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
+ V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV+++V EA
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIV-AGVTPGKGGMEVLGVPVYDTVKEAV 60
Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
A + +AS+I+VP P AA A +EA A + L+V ITEGIP DMV
Sbjct: 61 AHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Length = 297 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 2e-72
Identities = 60/107 (56%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
AV VD TRV+ QGITG+ G+FH + +EYGTK+V GVTP KGG+E G+PV++SV EA
Sbjct: 7 AVLVDSETRVLVQGITGREGSFHAKAMLEYGTKVV-AGVTPGKGGSEVHGVPVYDSVKEA 65
Query: 112 KAE-TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
AE + N S+++VP PFA A+ EA++A + LVV ITEGIP HD +
Sbjct: 66 LAEHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTM 112
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Length = 334 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 5e-57
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
Query: 52 AVFVDKNTRVICQGITGK--NGTFHTEQAIEYGTKMVVGGVTPKKG--------GTEHLG 101
++T+ I G+ + G + V V P G G + +
Sbjct: 4 TTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEIL 63
Query: 102 LPVFNSVAEA-KAETKANASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMV 157
+PVF ++A+A + + + + + A + ME M A++ + I EGIP+
Sbjct: 64 IPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTR 121
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 2e-51
Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 18/174 (10%)
Query: 2 ARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASH------PAVFV 55
L GS + PS +S S R A + S
Sbjct: 434 TANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKSTTLF 493
Query: 56 DKNTRVICQGITGKN--GTFHTEQAIEYGTKMVVGGVTPKKG--------GTEHLGLPVF 105
++T+ I G+ + G + V V P G G + + +PVF
Sbjct: 494 SRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVF 553
Query: 106 NSVAEA-KAETKANASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMV 157
++A+A + + + + + A + ME M A++ + I EGIP+
Sbjct: 554 KNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTR 607
|
| >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Length = 480 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 8e-30
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 77 QAIEYGTKMVVGGVTPKKGGTEHL-GLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135
Q +E K + G ++ L + ++S + AN ++I V +AA +
Sbjct: 2 QQLEEALK----QLAQGSGSSQALTQVRRWDSACQK--LPDANLALISVAGEYAAELANQ 55
Query: 136 AMEAELDLVVCITEGIPQHDMV 157
A++ L+ V+ ++ + D +
Sbjct: 56 ALDRNLN-VMMFSDNVTLEDEI 76
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 182 | |||
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 99.91 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 99.91 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 99.91 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 99.9 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 99.9 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 99.86 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 99.79 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 99.76 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 99.72 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 99.69 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 99.67 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 99.66 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 99.64 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 99.64 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 99.63 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 99.62 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 99.62 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 99.57 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 99.56 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 99.27 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 99.1 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 99.03 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 99.0 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 98.99 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 98.97 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.95 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.95 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.94 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.93 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.92 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.91 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.91 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.9 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.9 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.9 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 98.89 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.88 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.88 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.87 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.87 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.87 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.87 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.86 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.86 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.85 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.83 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.83 | |
| 3dmy_A | 480 | Protein FDRA; predicted actyl-COA synthetase, nysg | 98.82 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.82 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.8 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.8 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.79 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.78 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.78 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.78 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.78 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.77 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.77 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.76 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.76 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.76 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.75 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.73 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.71 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 98.69 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.69 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.68 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 98.66 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.61 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.6 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.59 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.59 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.55 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.51 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 98.42 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 98.41 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.38 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 98.31 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 98.3 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 98.29 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 98.24 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.24 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.23 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.19 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 98.14 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.12 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 98.08 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.07 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.07 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.05 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 98.03 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 98.03 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 98.0 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.97 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.97 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.93 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.91 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.9 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.9 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.88 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.87 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.87 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.86 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.86 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 97.85 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.85 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 97.83 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.82 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.8 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.79 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.79 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.79 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.74 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.74 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.74 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.72 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.72 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.71 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.7 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 97.69 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.68 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.68 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.68 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 97.67 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.65 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.65 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 97.64 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 97.62 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.62 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.62 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.61 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.6 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.59 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.58 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.57 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.56 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.52 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.52 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.52 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.51 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.49 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 97.48 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.47 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 97.47 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.45 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.42 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.41 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.41 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.41 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.41 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.39 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.39 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 97.35 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.35 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.34 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 96.45 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.33 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.3 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 97.27 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 97.27 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 97.26 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.26 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.25 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.23 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.23 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.23 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.23 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.22 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.21 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.21 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.2 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.2 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.2 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.19 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 97.19 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 97.18 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 97.17 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 97.16 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.16 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.13 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.1 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 97.1 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 97.1 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.1 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 97.09 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 97.09 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 97.07 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.07 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 97.06 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 97.04 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 97.04 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.04 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 97.04 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 97.03 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.02 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.02 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 97.0 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.0 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.99 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 96.99 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.98 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 96.98 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.97 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 96.96 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 96.95 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 96.94 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.94 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.94 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 96.93 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.93 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 96.92 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.92 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 96.92 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 96.91 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.91 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.91 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.9 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 96.89 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.89 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 96.88 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.86 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 96.86 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.85 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.85 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 96.83 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 96.82 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 96.8 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 96.8 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 96.79 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 96.78 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.77 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 96.77 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.75 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 96.75 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.74 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 96.72 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 96.71 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 96.7 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 96.7 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.7 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 96.66 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 96.66 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.65 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.64 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 96.63 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.62 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 96.62 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 96.62 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 96.61 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 96.61 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 96.59 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 96.58 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 96.56 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 96.54 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 96.53 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 96.51 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.51 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 96.5 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.49 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 96.49 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 96.48 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.46 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 96.45 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.45 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.44 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.43 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 96.39 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.38 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 96.35 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 96.33 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 96.33 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 96.33 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.32 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 96.31 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.3 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 96.3 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.28 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 96.27 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 96.27 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 96.26 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 96.22 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.21 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 96.17 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 96.16 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 96.15 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 96.13 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 96.13 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 96.11 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 96.11 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 96.11 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.1 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.08 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 96.07 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.05 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 96.02 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 96.02 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 96.01 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.98 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.97 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.96 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.92 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.92 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 95.91 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.91 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 95.91 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.9 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.89 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 95.85 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 95.83 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.83 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 95.78 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 95.74 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 95.74 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 95.74 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 95.73 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 95.72 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.69 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 95.62 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.61 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 95.6 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 95.57 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 95.55 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 95.51 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 95.48 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 95.47 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 95.43 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.4 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 95.36 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 95.33 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 95.3 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 95.2 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 95.18 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 95.16 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 95.12 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 95.12 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 95.1 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 95.05 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 95.05 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 95.05 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.02 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 94.97 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 94.97 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 94.96 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 94.93 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 94.91 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 94.91 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 94.87 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 94.87 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 94.8 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 94.77 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 94.74 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 94.73 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 94.72 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 94.72 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 94.7 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 94.7 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 94.7 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.67 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 94.65 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 94.63 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 94.6 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 94.55 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 94.52 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 94.49 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.48 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 94.47 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 94.46 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 94.45 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 94.43 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 94.43 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 94.43 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 94.42 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 94.4 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 94.39 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 94.39 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 94.38 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 94.37 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 94.35 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 94.34 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 94.33 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 94.31 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 94.29 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 94.26 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.26 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 94.24 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 94.23 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 94.22 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 94.2 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 94.18 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 94.15 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 94.14 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 94.12 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.12 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.09 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 94.08 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 94.06 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 94.05 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 94.04 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 94.04 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 94.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 93.95 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 93.94 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 93.94 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 93.93 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 93.92 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 93.92 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 93.92 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 93.91 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 93.87 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 93.86 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 93.86 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 93.84 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 93.83 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 93.82 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 93.81 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 93.79 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 93.75 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 93.74 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 93.74 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 93.73 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 93.71 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 93.69 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 93.69 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 93.65 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 93.64 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 93.64 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 93.63 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 93.62 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 93.62 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 93.59 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 93.58 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 93.57 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 93.55 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 93.55 | |
| 1gr0_A | 367 | Inositol-3-phosphate synthase; isomerase, oxidored | 93.55 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 93.54 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 93.53 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 93.53 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 93.52 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 93.52 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 93.5 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 93.49 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.48 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 93.48 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 93.47 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 93.46 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 93.44 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 93.43 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 93.43 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.41 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 93.4 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 93.39 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 93.38 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 93.38 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 93.36 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 93.34 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 93.34 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 93.34 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 93.33 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 93.32 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 93.26 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.23 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 93.23 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.23 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 93.22 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 93.22 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 93.22 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 93.21 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 93.19 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 93.18 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 93.18 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 93.15 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 93.14 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 93.14 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 93.12 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 93.12 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 93.12 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 93.11 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 93.1 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 93.1 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 93.09 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 93.08 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 93.08 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 93.06 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 93.02 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 93.02 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 93.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 92.99 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 92.98 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 92.95 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.95 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 92.94 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.93 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 92.92 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 92.91 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 92.9 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 92.83 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 92.77 |
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=187.47 Aligned_cols=115 Identities=51% Similarity=0.837 Sum_probs=109.2
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+++++++||+|+|++|+||+.+++.++++|++++ ++|+|++.|+++.|+|||+|++|+++++++|+++||+||+.+.++
T Consensus 2 ~~~~~~~~VaVvGasG~~G~~~~~~l~~~g~~~v-~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~ 80 (288)
T 1oi7_A 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIV-AGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADA 80 (288)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHH
T ss_pred eecCCCCEEEEECCCCCHHHHHHHHHHHcCCeEE-EEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHH
Confidence 6899999999999999999999999999999988 999999877788999999999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+++|+++|++.+|++|+||+++|+.++.++|++.++
T Consensus 81 ~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi 116 (288)
T 1oi7_A 81 ALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGS 116 (288)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999989999999999999999988766
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=186.78 Aligned_cols=118 Identities=51% Similarity=0.800 Sum_probs=107.7
Q ss_pred CCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC-CcEEEEeeChHH
Q 030169 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK-ANASVIYVPPPF 128 (182)
Q Consensus 50 ~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~-~DvaVdfVpp~a 128 (182)
.|.++++++++|+|+|++|+||+.+++.++++|+++| ++|||++.|+++.|+|||+|++|++++++ +|+++||+||+.
T Consensus 5 ~~~~l~~~~~~vvV~Gasg~~G~~~~~~l~~~g~~~v-~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~ 83 (297)
T 2yv2_A 5 VMAVLVDSETRVLVQGITGREGSFHAKAMLEYGTKVV-AGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPF 83 (297)
T ss_dssp ----CCSTTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGG
T ss_pred hhhHhhCCCCEEEEECCCCCHHHHHHHHHHhCCCcEE-EEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHH
Confidence 3678999999999999999999999999999999988 99999987778899999999999988655 999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+.+++++|+++|++.+|++|+||+++|+.+|.++|++.++
T Consensus 84 ~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi 123 (297)
T 2yv2_A 84 APDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGA 123 (297)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999988888999999999999999988776
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-24 Score=184.34 Aligned_cols=116 Identities=52% Similarity=0.838 Sum_probs=109.1
Q ss_pred eeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 52 ~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
..+++++++++|+|++|+||+.+++.++++|+++| ++|||++.|+++.|+|+|+|++|+++++++|+++||+||..+.+
T Consensus 7 ~~l~~~~~~v~V~Gasg~~G~~~~~~l~~~g~~~V-~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~ 85 (294)
T 2yv1_A 7 MILLDENTKAIVQGITGRQGSFHTKKMLECGTKIV-GGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKD 85 (294)
T ss_dssp CCSSCTTCCEEEETTTSHHHHHHHHHHHHTTCCEE-EEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHH
T ss_pred HHHhCCCCEEEEECCCCCHHHHHHHHHHhCCCeEE-EEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHH
Confidence 46889999999999999999999999999999988 99999987778899999999999998778999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
++++|+++|++.+|++|+||+++|+.+|.++|++.++
T Consensus 86 ~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi 122 (294)
T 2yv1_A 86 AVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGV 122 (294)
T ss_dssp HHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999998888999999999999999988766
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-24 Score=184.41 Aligned_cols=120 Identities=68% Similarity=1.038 Sum_probs=112.9
Q ss_pred cCCCCCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC
Q 030169 46 AAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 46 ~~~~~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
|++|+|..++++++.++|+|++|++|+.+++.++++|++++ ++|||++.|+++.|+|||+|++|+++++++|++++|+|
T Consensus 2 ~~~~~~~~l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v-~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP 80 (305)
T 2fp4_A 2 YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLV-GGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVP 80 (305)
T ss_dssp TGGGGGGGCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCC
T ss_pred chhhHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEE-EEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecC
Confidence 55899999999999888889999999999999999999988 99999987778999999999999998778999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
++.+++++++|+++|++.+|++|+|++++|+.++.+.+++-
T Consensus 81 ~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~ 121 (305)
T 2fp4_A 81 PPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 121 (305)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999765
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=180.89 Aligned_cols=115 Identities=62% Similarity=0.992 Sum_probs=108.1
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+++++++||+|+|++|+||+.+++.+.++|++++ ++|||++.|+++.|+|+|+|++|+++++++|++++|+|+..+.++
T Consensus 2 ~~~~~~~rVaViG~sG~~G~~~~~~l~~~g~~~V-~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~ 80 (288)
T 2nu8_A 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDS 80 (288)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHH
T ss_pred eecCCCCEEEEECCCChHHHHHHHHHHHCCCeEE-EEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHH
Confidence 6899999999999999999999999999999988 999999766678999999999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+++|+++|++.+|++|+|++++|+.+|.++|++..+
T Consensus 81 ~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv 116 (288)
T 2nu8_A 81 ILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGV 116 (288)
T ss_dssp HHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999989999999999999999987665
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-22 Score=175.54 Aligned_cols=108 Identities=19% Similarity=0.364 Sum_probs=95.8
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHh-------CCceEEeeccCCCCC--eEe------cCccccccHHHHHhcc-C
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEY-------GTKMVVGGVTPKKGG--TEH------LGLPVFNSVAEAKAET-K 116 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~-------g~~IV~AgVdp~~~G--~~i------~GvPVy~Sv~ea~~~~-~ 116 (182)
.++++++||+|+|++||+ ++.|+++ ++++| |||||+++| +++ .|+|||+|++|+++++ +
T Consensus 5 ~l~~~~tkviV~G~~Gk~----~~~ml~~~~~~~r~~~~vV-agV~P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~ 79 (334)
T 3mwd_B 5 TLFSRHTKAIVWGMQTRA----VQGMLDFDYVCSRDEPSVA-AMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPE 79 (334)
T ss_dssp CCCCTTCCEEEESCCHHH----HHHHHHHHHHTTCSSCSEE-EEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTT
T ss_pred cccCCCCeEEEECCchHH----HHHHHHhcccccCCCceEE-EEEcCCCCCccceEeccCccCCceeeCCHHHHhhcCCC
Confidence 589999999999999884 5566655 49999 999999985 544 3899999999998876 6
Q ss_pred CcEEEEeeChHHHHHHHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 117 ANASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 117 ~DvaVdfVpp~av~~a~~eAie-~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+|++|+||||..+.+.+.|+++ +|++.|||||+|||++|+.+|.++|++
T Consensus 80 ~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~ 129 (334)
T 3mwd_B 80 VDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQ 129 (334)
T ss_dssp CCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999975
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=175.94 Aligned_cols=108 Identities=19% Similarity=0.365 Sum_probs=97.9
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhC-------CceEEeeccCCCCC--eEe------cCccccccHHHHHhcc-C
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYG-------TKMVVGGVTPKKGG--TEH------LGLPVFNSVAEAKAET-K 116 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g-------~~IV~AgVdp~~~G--~~i------~GvPVy~Sv~ea~~~~-~ 116 (182)
.++++++||+|+|++|| +++.|++|| +++| |||+|+++| +++ .|+|||+|++|+++++ +
T Consensus 491 ~l~~~~trviV~G~tg~----~~~~ml~~~~~~~~~~~~vV-a~V~P~~~g~~~~~~~G~~~~Gvp~y~sv~ea~~~~p~ 565 (829)
T 3pff_A 491 TLFSRHTKAIVWGMQTR----AVQGMLDFDYVCSRDEPSVA-AMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPE 565 (829)
T ss_dssp CCCCTTCCEEEESCCHH----HHHHHHHHHHHTTCSSCSEE-EEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTT
T ss_pred eeecCCCeEEEECCcHH----HHHHHHHhcccccCCCCcEE-EEEcCCCCCccceEEecCCcCCcccCCcHHHHhhccCC
Confidence 68999999999999877 778888775 8999 999999985 233 4799999999999875 6
Q ss_pred CcEEEEeeChHHHHHHHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 117 ANASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 117 ~DvaVdfVpp~av~~a~~eAie-~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+|++|+|||+..+.++++||++ +|++.+|+||+||+++|+.+|.++|++
T Consensus 566 ~DlaVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~ 615 (829)
T 3pff_A 566 VDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQ 615 (829)
T ss_dssp CCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999 999999999999999999999999965
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.8e-19 Score=151.78 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=98.6
Q ss_pred CCceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCC---CCeE--------ecCccccccHHHHHhccCCcEEEEee
Q 030169 57 KNTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKK---GGTE--------HLGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~---~G~~--------i~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
..+||+|+|++|+||+.+++.+. +.+++++ |++++.. .|++ ..|+|+|++++++++ ++|++|||+
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLv-g~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~--~aDVvIDFT 96 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELC-AVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFS--NTEGILDFS 96 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEE-EEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTT--SCSEEEECS
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEecCCccccccchHHhhccCcCCceeeCCHHHHhc--CCCEEEEcC
Confidence 45799999999999999999887 4579999 9988753 2332 248999999999988 899999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchh-cchh
Q 030169 125 PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA-FLNF 173 (182)
Q Consensus 125 pp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~-~~~~ 173 (182)
+|+.+.+.++.|+++|+++|++ |||+++++..+|.++|+++||- +.||
T Consensus 97 ~p~a~~~~~~~~l~~Gv~vViG-TTG~~~e~~~~L~~aa~~~~~~~a~N~ 145 (288)
T 3ijp_A 97 QPQASVLYANYAAQKSLIHIIG-TTGFSKTEEAQIADFAKYTTIVKSGNM 145 (288)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEC-CCCCCHHHHHHHHHHHTTSEEEECSCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhCcCCEEEECCC
Confidence 9999999999999999999999 9999999999999999999864 3354
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=143.64 Aligned_cols=109 Identities=16% Similarity=0.274 Sum_probs=95.9
Q ss_pred CceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCC---CCeEe-------cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKK---GGTEH-------LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~---~G~~i-------~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
.+||+|+|++|+||+.+++.+.+ .+++++ |.+++.. .|++. .|+|+|++++++++ ++|++|||++|
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv-~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~--~~DVVIDfT~p 83 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLV-GALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCA--EADYLIDFTLP 83 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEE-EEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHH--HCSEEEECSCH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEEecCcccccccHHHHhCCCCCceecCCHHHHhc--CCCEEEEcCCH
Confidence 37999999999999999998875 569999 8888763 23221 28999999999988 79999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 170 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~ 170 (182)
..+.+++++|+++|+++|++ |||+++++..+|.++|+++||-+
T Consensus 84 ~a~~~~~~~al~~G~~vVig-TTG~s~~~~~~L~~aa~~~~vv~ 126 (272)
T 4f3y_A 84 EGTLVHLDAALRHDVKLVIG-TTGFSEPQKAQLRAAGEKIALVF 126 (272)
T ss_dssp HHHHHHHHHHHHHTCEEEEC-CCCCCHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhccCCEEE
Confidence 99999999999999999998 99999999999999999998743
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=128.37 Aligned_cols=104 Identities=16% Similarity=0.288 Sum_probs=90.1
Q ss_pred eecCCceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 54 FVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 54 li~~~trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+++...+|+|+|++ |++|+.+.+.+.++|++|+ +|||++.++++.|+|+|+|++|+++ ++|++++++|++.++
T Consensus 9 ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~--~vnp~~~~~~i~G~~~~~sl~el~~--~vDlavi~vp~~~~~ 84 (140)
T 1iuk_A 9 YLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVL--PVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPPSALM 84 (140)
T ss_dssp HHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEE--EECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCHHHHT
T ss_pred HHcCCCEEEEECCCCCCCChHHHHHHHHHHCCCEEE--EeCCCcccCcCCCEEecCCHHHCCC--CCCEEEEEeCHHHHH
Confidence 45445679999998 8999999999999999977 9999976678999999999999988 899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
+++++|++.|++.+|+ .+|+.++++.++.+.
T Consensus 85 ~v~~~~~~~gi~~i~~-~~g~~~~~~~~~a~~ 115 (140)
T 1iuk_A 85 DHLPEVLALRPGLVWL-QSGIRHPEFEKALKE 115 (140)
T ss_dssp TTHHHHHHHCCSCEEE-CTTCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEE-cCCcCHHHHHHHHHH
Confidence 9999999999999987 778876555544443
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-17 Score=138.76 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=99.4
Q ss_pred CCceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCC---CeE--------ecCccccccHHHHHhccCCcEEEEee
Q 030169 57 KNTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKG---GTE--------HLGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~---G~~--------i~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
+.+||+|+|++|+||+.+++.+. ..+.+++ |.+++... |++ ..+++++++++++++ ++|++|||+
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elv-a~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~--~~DvVIDft 80 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLG-AALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFT 80 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECC-CEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECS
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhc--CCCEEEEcC
Confidence 45899999999999999999877 5679999 88876542 221 237899999999887 799999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc-------chhhhhhh
Q 030169 125 PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-------LNFIMKLT 178 (182)
Q Consensus 125 pp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~-------~~~~~~~~ 178 (182)
+|+.+.++++.|+++|+++|++ |+|+++++..+|.++++++|+-+ .|.+|+|.
T Consensus 81 ~p~~~~~~~~~a~~~G~~vVig-TtG~~~e~~~~L~~~a~~~~vv~a~N~siGvn~~~~l~ 140 (273)
T 1dih_A 81 RPEGTLNHLAFCRQHGKGMVIG-TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLL 140 (273)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEC-CCCCCHHHHHHHHHHTTTSCEEECSCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCEEEE-CCCCCHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHH
Confidence 9999999999999999999888 88999999999999999998643 34556654
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.5e-17 Score=136.06 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=92.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
+||+|+|+ |+||+.+++.+.+.+-+++ |.+|+.... ..|+|+|++++++. ++|++|||++|+.+.+.++ ++
T Consensus 4 mkI~ViGa-GrMG~~i~~~l~~~~~eLv-a~~d~~~~~--~~gv~v~~dl~~l~---~~DVvIDft~p~a~~~~~~--l~ 74 (243)
T 3qy9_A 4 MKILLIGY-GAMNQRVARLAEEKGHEIV-GVIENTPKA--TTPYQQYQHIADVK---GADVAIDFSNPNLLFPLLD--ED 74 (243)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEECSSCC----CCSCBCSCTTTCT---TCSEEEECSCHHHHHHHHT--SC
T ss_pred eEEEEECc-CHHHHHHHHHHHhCCCEEE-EEEecCccc--cCCCceeCCHHHHh---CCCEEEEeCChHHHHHHHH--Hh
Confidence 79999999 9999999998886544888 889987743 57899999999976 6999999999999999997 89
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHHhcccchhcc-hh
Q 030169 139 AELDLVVCITEGIPQHDMVINFTRVNILLVAFL-NF 173 (182)
Q Consensus 139 ~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~~-~~ 173 (182)
+|+++|++ |||+++++.++|.++|+++||-+. ||
T Consensus 75 ~g~~vVig-TTG~s~e~~~~l~~aa~~~~v~~a~N~ 109 (243)
T 3qy9_A 75 FHLPLVVA-TTGEKEKLLNKLDELSQNMPVFFSANM 109 (243)
T ss_dssp CCCCEEEC-CCSSHHHHHHHHHHHTTTSEEEECSSC
T ss_pred cCCceEeC-CCCCCHHHHHHHHHHHhcCCEEEECCc
Confidence 99999998 999999999999999999997543 55
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-16 Score=142.75 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=91.3
Q ss_pred eecCCceEEEEccCC---CCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 54 FVDKNTRVICQGITG---KNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 54 li~~~trViVvG~tG---kmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+++| .+|+|+|+++ +.|+.+.++++++|...| .+|||+. +++.|+|+|+|++|+++ ++|++++|+|+..+.
T Consensus 5 l~~p-~siAVvGas~~~~~~g~~v~~~l~~~g~~~v-~pVnP~~--~~i~G~~~y~sl~~lp~--~~Dlavi~vp~~~~~ 78 (457)
T 2csu_A 5 FFNP-KGIAVIGASNDPKKLGYEVFKNLKEYKKGKV-YPVNIKE--EEVQGVKAYKSVKDIPD--EIDLAIIVVPKRFVK 78 (457)
T ss_dssp TTSC-SEEEEETCCSCTTSHHHHHHHHHTTCCSSEE-EEECSSC--SEETTEECBSSTTSCSS--CCSEEEECSCHHHHH
T ss_pred hcCC-CeEEEECcCCCCCchHHHHHHHHHHcCCCEE-EEECCCC--CeECCEeccCCHHHcCC--CCCEEEEecCHHHHH
Confidence 5665 6699999995 568899999999963344 5999984 57999999999999988 899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHH-H-----HHHHHHHhcc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQH-D-----MVINFTRVNI 165 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~e-D-----~~~l~~~ak~ 165 (182)
++++||+++|++.+|++|+||++. + ..++.+.+++
T Consensus 79 ~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~ 119 (457)
T 2csu_A 79 DTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHK 119 (457)
T ss_dssp HHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHH
Confidence 999999999999999999999863 2 6778888764
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-16 Score=120.70 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=88.7
Q ss_pred eeecCCceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 53 ~li~~~trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
.++++..+|+|+|++ |++|+.+.+.+.+.|++|+ +|||+. +++.|+|+|+|++|+++ ++|++++++|++.+
T Consensus 17 ~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~--~Vnp~~--~~i~G~~~y~sl~~l~~--~vDlvvi~vp~~~~ 90 (144)
T 2d59_A 17 EILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVY--PVNPKY--EEVLGRKCYPSVLDIPD--KIEVVDLFVKPKLT 90 (144)
T ss_dssp HHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEE--EECTTC--SEETTEECBSSGGGCSS--CCSEEEECSCHHHH
T ss_pred HHHcCCCEEEEEccCCCCCchHHHHHHHHHHCCCEEE--EECCCC--CeECCeeccCCHHHcCC--CCCEEEEEeCHHHH
Confidence 456645779999998 8999999999999999977 999986 57899999999999988 79999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
.+++++|+++|++.+|+ ..|...+++.++.+.
T Consensus 91 ~~vv~~~~~~gi~~i~~-~~g~~~~~l~~~a~~ 122 (144)
T 2d59_A 91 MEYVEQAIKKGAKVVWF-QYNTYNREASKKADE 122 (144)
T ss_dssp HHHHHHHHHHTCSEEEE-CTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEE-CCCchHHHHHHHHHH
Confidence 99999999999999886 788875555444443
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-16 Score=122.54 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=89.7
Q ss_pred eecCCceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 54 FVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 54 li~~~trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
++++..+|+|+|++ |+||..+++.+.+.|++|+ +|||++.|+++.|+|+|+|++|+++ ++|++++++|+..+.
T Consensus 9 ll~~p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~--~vnp~~~g~~i~G~~~~~sl~el~~--~~Dlvii~vp~~~v~ 84 (145)
T 2duw_A 9 ILTSTRTIALVGASDKPDRPSYRVMKYLLDQGYHVI--PVSPKVAGKTLLGQQGYATLADVPE--KVDMVDVFRNSEAAW 84 (145)
T ss_dssp HHHHCCCEEEESCCSCTTSHHHHHHHHHHHHTCCEE--EECSSSTTSEETTEECCSSTTTCSS--CCSEEECCSCSTHHH
T ss_pred HHhCCCEEEEECcCCCCCChHHHHHHHHHHCCCEEE--EeCCcccccccCCeeccCCHHHcCC--CCCEEEEEeCHHHHH
Confidence 45534679999998 8999999999999999977 9999997778999999999999887 899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+++++|++.|++.||+.+..+ ..++.+++++-
T Consensus 85 ~v~~~~~~~g~~~i~i~~~~~----~~~l~~~a~~~ 116 (145)
T 2duw_A 85 GVAQEAIAIGAKTLWLQLGVI----NEQAAVLAREA 116 (145)
T ss_dssp HHHHHHHHHTCCEEECCTTCC----CHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEEcCChH----HHHHHHHHHHc
Confidence 999999999999999966444 34455555443
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.4e-16 Score=118.00 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=92.3
Q ss_pred CceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
..+|+|+|++ ++.|..+.+.+++.|++|+ +|||+. +++.|+|+|+|++|+++ +|++++|+|++.+.++++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~--pVnP~~--~~i~G~~~y~sl~dlp~---vDlavi~~p~~~v~~~v~ 76 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFI--PVGRKK--GEVLGKTIINERPVIEG---VDTVTLYINPQNQLSEYN 76 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEE--EESSSC--SEETTEECBCSCCCCTT---CCEEEECSCHHHHGGGHH
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEE--EECCCC--CcCCCeeccCChHHCCC---CCEEEEEeCHHHHHHHHH
Confidence 4569999999 7788899999999999999 999986 47999999999999876 899999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhcchhhh
Q 030169 135 EAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLNFIM 175 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~~~~~~ 175 (182)
+|.+.|++.|| ++.|+.++++.++.+.+..-.| +|-++
T Consensus 77 e~~~~g~k~v~-~~~G~~~~e~~~~a~~~Girvv--~nC~g 114 (122)
T 3ff4_A 77 YILSLKPKRVI-FNPGTENEELEEILSENGIEPV--IGCTL 114 (122)
T ss_dssp HHHHHCCSEEE-ECTTCCCHHHHHHHHHTTCEEE--ESCHH
T ss_pred HHHhcCCCEEE-ECCCCChHHHHHHHHHcCCeEE--CCcCe
Confidence 99999999876 5999988777777666653334 36544
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=116.28 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=86.0
Q ss_pred eeecCCceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 53 ~li~~~trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
.++++ .+|+|+|++ |+||+.+++.+++.|++|+ ++||+. +++.|+|+|+|++|+++ ++|++++++|++.+
T Consensus 10 ~l~~p-~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~--~vnp~~--~~i~G~~~~~s~~el~~--~vDlvii~vp~~~v 82 (138)
T 1y81_A 10 NSKEF-RKIALVGASKNPAKYGNIILKDLLSKGFEVL--PVNPNY--DEIEGLKCYRSVRELPK--DVDVIVFVVPPKVG 82 (138)
T ss_dssp ----C-CEEEEETCCSCTTSHHHHHHHHHHHTTCEEE--EECTTC--SEETTEECBSSGGGSCT--TCCEEEECSCHHHH
T ss_pred cccCC-CeEEEEeecCCCCCHHHHHHHHHHHCCCEEE--EeCCCC--CeECCeeecCCHHHhCC--CCCEEEEEeCHHHH
Confidence 34555 679999998 9999999999999999977 999986 57899999999999988 79999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.+++++|++.|++.+|+.+.++. .++.+++++
T Consensus 83 ~~v~~~~~~~g~~~i~~~~~~~~----~~l~~~a~~ 114 (138)
T 1y81_A 83 LQVAKEAVEAGFKKLWFQPGAES----EEIRRFLEK 114 (138)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCC----HHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCccHH----HHHHHHHHH
Confidence 99999999999999999887763 444444443
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-15 Score=125.14 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=86.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
+||+|+|++|+||+.+++.+.+. +.+++ +.+++. ++++++.. .++|++|||++|+.+.++++.|+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elv-a~~d~~------------~dl~~~~~-~~~DvvIDfT~p~a~~~~~~~a~ 66 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLS-AELDAG------------DPLSLLTD-GNTEVVIDFTHPDVVMGNLEFLI 66 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEE-EEECTT------------CCTHHHHH-TTCCEEEECSCTTTHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEccC------------CCHHHHhc-cCCcEEEEccChHHHHHHHHHHH
Confidence 48999999999999999988754 79999 888874 34666654 36999999999999999999999
Q ss_pred HcCCCEEEEeCCCCCHHHHHHHHHHhc---ccch-hcchh
Q 030169 138 EAELDLVVCITEGIPQHDMVINFTRVN---ILLV-AFLNF 173 (182)
Q Consensus 138 e~GIk~VV~iTeG~~~eD~~~l~~~ak---~ipv-~~~~~ 173 (182)
++|++.|++ |||+++++..+|.++++ .+|+ -..||
T Consensus 67 ~~g~~~Vig-TTG~~~e~~~~l~~aa~~~~~~~vv~a~N~ 105 (245)
T 1p9l_A 67 DNGIHAVVG-TTGFTAERFQQVESWLVAKPNTSVLIAPNF 105 (245)
T ss_dssp HTTCEEEEC-CCCCCHHHHHHHHHHHHTSTTCEEEECSCC
T ss_pred HcCCCEEEc-CCCCCHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 999999999 99999999999999987 6774 44454
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-15 Score=126.19 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=85.1
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
..++|-.|.|++||||+.+.+...+.|.+++ |++++.. . +++ + ++|++|||+.|+++.++++.
T Consensus 10 ~~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv-~~id~~~--~--------~~l----~--~~DVvIDFT~P~a~~~~~~~ 72 (228)
T 1vm6_A 10 HHHMKYGIVGYSGRMGQEIQKVFSEKGHELV-LKVDVNG--V--------EEL----D--SPDVVIDFSSPEALPKTVDL 72 (228)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEEETTE--E--------EEC----S--CCSEEEECSCGGGHHHHHHH
T ss_pred hccceeEEEEecCHHHHHHHHHHhCCCCEEE-EEEcCCC--c--------ccc----c--CCCEEEECCCHHHHHHHHHH
Confidence 4578899999999999999887667889999 9998753 1 111 2 68999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc-chh
Q 030169 136 AMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 173 (182)
Q Consensus 136 Aie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~-~~~ 173 (182)
|+++|+++|++ |||+++++..++.++++++||-. .||
T Consensus 73 ~~~~g~~~ViG-TTG~~~~~~~~l~~~a~~~~vv~apNf 110 (228)
T 1vm6_A 73 CKKYRAGLVLG-TTALKEEHLQMLRELSKEVPVVQAYNF 110 (228)
T ss_dssp HHHHTCEEEEC-CCSCCHHHHHHHHHHTTTSEEEECSCC
T ss_pred HHHcCCCEEEe-CCCCCHHHHHHHHHHHhhCCEEEeccc
Confidence 99999999999 99999999999999999988643 344
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-12 Score=109.21 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=80.8
Q ss_pred eeecCCceEEEEccCCCCchhhhHHH--HHhCCceEEee--ccCC-CCCe-EecCccccc--cHHHHHhccCCcEEEEee
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVVGG--VTPK-KGGT-EHLGLPVFN--SVAEAKAETKANASVIYV 124 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~--~~~g~~IV~Ag--Vdp~-~~G~-~i~GvPVy~--Sv~ea~~~~~~DvaVdfV 124 (182)
+..++.++|+|+|+ |++|+.+++.+ .+.|++++ |. .||. +.|+ .+.|+|||+ ++++.++++++|++++.+
T Consensus 79 Lg~~~~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iV-g~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAv 156 (212)
T 3keo_A 79 LNDHSTTNVMLVGC-GNIGRALLHYRFHDRNKMQIS-MAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTV 156 (212)
T ss_dssp TTTTSCEEEEEECC-SHHHHHHTTCCCCTTSSEEEE-EEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECS
T ss_pred hCCCCCCEEEEECc-CHHHHHHHHhhhcccCCeEEE-EEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEec
Confidence 45778889999999 99999998863 35679999 86 5666 7787 789999996 467777777899999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 125 PPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 125 pp~av~~a~~eAie~GIk~VV~iT 148 (182)
|...++++++.++++||+.||++|
T Consensus 157 Ps~~aq~v~d~lv~~GIk~I~nFa 180 (212)
T 3keo_A 157 PSTEAQEVADILVKAGIKGILSFS 180 (212)
T ss_dssp CGGGHHHHHHHHHHHTCCEEEECS
T ss_pred CchhHHHHHHHHHHcCCCEEEEcC
Confidence 999999999999999999999998
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.1e-11 Score=102.65 Aligned_cols=112 Identities=9% Similarity=-0.012 Sum_probs=91.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEe-cCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i-~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
..||+|+|+ |+||+.+.+.+.+. +++++ +.+|+.... .. .|+++|+++++++. ++|++++++|+....+.+..
T Consensus 3 ~irV~IiG~-G~mG~~~~~~l~~~~~~elv-av~d~~~~~-~~~~gv~~~~d~~~ll~--~~DvViiatp~~~h~~~~~~ 77 (320)
T 1f06_A 3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLV-GIFSRRATL-DTKTPVFDVADVDKHAD--DVDVLFLCMGSATDIPEQAP 77 (320)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTCSSEEEE-EEEESSSCC-SSSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHHHHHH
T ss_pred CCEEEEEee-cHHHHHHHHHHhcCCCCEEE-EEEcCCHHH-hhcCCCceeCCHHHHhc--CCCEEEEcCCcHHHHHHHHH
Confidence 468999998 99999999988865 68998 877776422 22 36888999998874 89999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCCHHHH-HHHHHHhcc---cchhcchhh
Q 030169 136 AMEAELDLVVCITEGIPQHDM-VINFTRVNI---LLVAFLNFI 174 (182)
Q Consensus 136 Aie~GIk~VV~iTeG~~~eD~-~~l~~~ak~---ipv~~~~~~ 174 (182)
|+++|+++|+..+.+++.++. .+|.+++++ +.+.+.||.
T Consensus 78 al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~~~ 120 (320)
T 1f06_A 78 KFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWD 120 (320)
T ss_dssp HHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSBT
T ss_pred HHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEecCCh
Confidence 999999888775567888888 899999976 666555654
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=94.83 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=78.6
Q ss_pred eeecCCceEEEEccCCCCchhhhHHH--HHhCCceEEee--ccCCCCCeEecCcccc--ccHHHHHhccCCcEEEEeeCh
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVVGG--VTPKKGGTEHLGLPVF--NSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~--~~~g~~IV~Ag--Vdp~~~G~~i~GvPVy--~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+..++.+||+|+|+ |++|+.+++.+ .. |++++ |. .||.+.|+.+.|+||+ +++++++++ ++|++++.+|.
T Consensus 75 lg~~~~~rV~IIGa-G~~G~~la~~~~~~~-g~~iV-g~~D~dp~k~g~~i~gv~V~~~~dl~ell~~-~ID~ViIA~Ps 150 (211)
T 2dt5_A 75 LGLNRKWGLCIVGM-GRLGSALADYPGFGE-SFELR-GFFDVDPEKVGRPVRGGVIEHVDLLPQRVPG-RIEIALLTVPR 150 (211)
T ss_dssp HTTTSCEEEEEECC-SHHHHHHHHCSCCCS-SEEEE-EEEESCTTTTTCEETTEEEEEGGGHHHHSTT-TCCEEEECSCH
T ss_pred hCcCCCCEEEEECc-cHHHHHHHHhHhhcC-CcEEE-EEEeCCHHHHhhhhcCCeeecHHhHHHHHHc-CCCEEEEeCCc
Confidence 34567789999999 99999999852 24 88898 75 4677888888999985 568888877 89999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iT 148 (182)
...+++++.|+++|++.|++++
T Consensus 151 ~~~~ei~~~l~~aGi~~Ilnf~ 172 (211)
T 2dt5_A 151 EAAQKAADLLVAAGIKGILNFA 172 (211)
T ss_dssp HHHHHHHHHHHHHTCCEEEECS
T ss_pred hhHHHHHHHHHHcCCCEEEECC
Confidence 9999999999999999999966
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=94.16 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=87.3
Q ss_pred CceEEEEccCCCCch-hhhHHHHHh-CCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGT-FHTEQAIEY-GTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~-~v~k~~~~~-g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~DvaVdfVpp~av~~a~~ 134 (182)
..||.|+|+ |++|+ .+.+.+.+. +++++ |..|+... ..|+|+|++++|+++. .++|++++.+|+....+.+.
T Consensus 25 ~~rvgiiG~-G~ig~~~~~~~l~~~~~~~lv-av~d~~~~---~~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~ 99 (330)
T 4ew6_A 25 PINLAIVGV-GKIVRDQHLPSIAKNANFKLV-ATASRHGT---VEGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAY 99 (330)
T ss_dssp CEEEEEECC-SHHHHHTHHHHHHHCTTEEEE-EEECSSCC---CTTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred CceEEEEec-CHHHHHHHHHHHHhCCCeEEE-EEEeCChh---hcCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 479999998 99998 788888764 68999 88887752 4689999999999986 68999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 135 EAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.|+++|+++++==--..+.+|..+|.++|++-
T Consensus 100 ~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~ 131 (330)
T 4ew6_A 100 KALVAGKHVFLEKPPGATLSEVADLEALANKQ 131 (330)
T ss_dssp HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 99999966553311268999999999999653
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-09 Score=91.49 Aligned_cols=110 Identities=13% Similarity=0.018 Sum_probs=89.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe----EecCccccccHHHHH--------hccCCcEEEEee
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAK--------AETKANASVIYV 124 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~--------~~~~~DvaVdfV 124 (182)
+..||.|+|+.|.+|+.+.+.+.+.+.+++ |.+|+..... ...+.++|.++++++ +..++|++++.+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lv-av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~t 80 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLV-ASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIAS 80 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTTCEEE-EEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECS
T ss_pred CceEEEEECCChHHHHHHHHHHHhCCCEEE-EEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECC
Confidence 457999999988999999999888888999 8888775431 234789999999988 455899999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 125 PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 125 pp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
|+....+.+.+|+++|+++++==-=..+.+|..+|.++|++--
T Consensus 81 P~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 123 (312)
T 3o9z_A 81 PNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTG 123 (312)
T ss_dssp CGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHC
T ss_pred CchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999775532112588999999999997643
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.6e-10 Score=91.64 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=72.7
Q ss_pred eeecCCceEEEEccCCCCchhhhHH--HHHhCCceEEee--ccCCCCCeEecCccccc--cHHHHHhccCCcEEEEeeCh
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQ--AIEYGTKMVVGG--VTPKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~--~~~~g~~IV~Ag--Vdp~~~G~~i~GvPVy~--Sv~ea~~~~~~DvaVdfVpp 126 (182)
+..++.+||+|+|+ |++|+.+++. ....|++++ |. .||.+.|+.+.|+||+. ++++++++. |++++.+|.
T Consensus 80 lg~~~~~rV~IIGA-G~~G~~La~~~~~~~~g~~iV-g~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~--D~ViIAvPs 155 (215)
T 2vt3_A 80 LDQDEMTDVILIGV-GNLGTAFLHYNFTKNNNTKIS-MAFDINESKIGTEVGGVPVYNLDDLEQHVKDE--SVAILTVPA 155 (215)
T ss_dssp HHHC---CEEEECC-SHHHHHHHHCC------CCEE-EEEESCTTTTTCEETTEEEEEGGGHHHHCSSC--CEEEECSCH
T ss_pred hCcCCCCEEEEEcc-CHHHHHHHHHHhcccCCcEEE-EEEeCCHHHHHhHhcCCeeechhhHHHHHHhC--CEEEEecCc
Confidence 34667789999999 9999999994 335679999 75 56778888899999875 467776643 999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iT 148 (182)
...+++++.++++|++.|++++
T Consensus 156 ~~~~ei~~~l~~aGi~~Ilnf~ 177 (215)
T 2vt3_A 156 VAAQSITDRLVALGIKGILNFT 177 (215)
T ss_dssp HHHHHHHHHHHHTTCCEEEECS
T ss_pred hhHHHHHHHHHHcCCCEEEEcC
Confidence 9999999999999999999987
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-09 Score=89.63 Aligned_cols=108 Identities=10% Similarity=-0.010 Sum_probs=86.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCC--Ce--EecCcc-ccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKG--GT--EHLGLP-VFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~--G~--~i~GvP-Vy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
..||.|+|+ |++|+.+++.+.+. +.+++ |..|+... .. +..|+| +|.+.+|+++..++|++++.+|+....+
T Consensus 5 ~~rigiiG~-G~ig~~~~~~l~~~~~~~~~-av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 82 (329)
T 3evn_A 5 KVRYGVVST-AKVAPRFIEGVRLAGNGEVV-AVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYK 82 (329)
T ss_dssp CEEEEEEBC-CTTHHHHHHHHHHHCSEEEE-EEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred ceEEEEEec-hHHHHHHHHHHHhCCCcEEE-EEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 478999999 99999999888765 47888 76665532 21 124777 9999999998778999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+..|+++|+++++==.-..+.+|..+|.++|++--
T Consensus 83 ~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~ 118 (329)
T 3evn_A 83 VAKAALLAGKHVLVEKPFTLTYDQANELFALAESCN 118 (329)
T ss_dssp HHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcC
Confidence 999999999876654223678999999999997643
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=93.93 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=89.7
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
++..||.|+|+ |.||+.+++.+.+. +.+++ |..|+....- +..|+++|++++|+++..++|++++.+|+...
T Consensus 11 ~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lv-av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 88 (354)
T 3q2i_A 11 DRKIRFALVGC-GRIANNHFGALEKHADRAELI-DVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLH 88 (354)
T ss_dssp SSCEEEEEECC-STTHHHHHHHHHHTTTTEEEE-EEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGH
T ss_pred CCcceEEEEcC-cHHHHHHHHHHHhCCCCeEEE-EEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHH
Confidence 35689999999 99999999988865 68898 8777764221 12378999999999987789999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+.+.+|+++|+++++-=.-..+.+|..+|.+++++-.
T Consensus 89 ~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g 126 (354)
T 3q2i_A 89 PTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAK 126 (354)
T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhC
Confidence 99999999999766553223688999999999997643
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-09 Score=88.91 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=79.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
+||.|+|+ |+||+.+++.+.+.|++++ +..|+.... .. +|++++|+.+ .++|++++++|+....+.+.++++
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv-~v~d~~~~~---~~--~~~~~~~l~~-~~~DvVv~~~~~~~~~~~~~~~l~ 72 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNGFEIA-AILDVRGEH---EK--MVRGIDEFLQ-REMDVAVEAASQQAVKDYAEKILK 72 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEECSSCCC---TT--EESSHHHHTT-SCCSEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEE-EEEecCcch---hh--hcCCHHHHhc-CCCCEEEECCCHHHHHHHHHHHHH
Confidence 48999999 9999999998888889998 777776421 11 8999999884 379999999999999999999999
Q ss_pred cCCCEEEEeCCCCCH-HHH-HHHHHHhcc
Q 030169 139 AELDLVVCITEGIPQ-HDM-VINFTRVNI 165 (182)
Q Consensus 139 ~GIk~VV~iTeG~~~-eD~-~~l~~~ak~ 165 (182)
+|+++++. +++.+. ++. .+|.+++++
T Consensus 73 ~G~~vv~~-~~~~~~~~~~~~~l~~~a~~ 100 (236)
T 2dc1_A 73 AGIDLIVL-STGAFADRDFLSRVREVCRK 100 (236)
T ss_dssp TTCEEEES-CGGGGGSHHHHHHHHHHHHH
T ss_pred CCCcEEEE-CcccCChHHHHHHHHHHHHh
Confidence 99976666 666543 444 788888865
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=92.22 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=89.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
..||.|+|+ |.||+.+++.+.+. +.+++ |..|+....- +..|.++|++++|+++..++|++++.+|+....+.
T Consensus 4 ~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~-av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~ 81 (344)
T 3euw_A 4 TLRIALFGA-GRIGHVHAANIAANPDLELV-VIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDL 81 (344)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCTTEEEE-EEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHH
T ss_pred ceEEEEECC-cHHHHHHHHHHHhCCCcEEE-EEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHH
Confidence 478999999 99999999988865 68888 7777654211 12368999999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+..|+++|+++++-=.-.++.++..+|.+++++-.+
T Consensus 82 ~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~ 117 (344)
T 3euw_A 82 ITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGAS 117 (344)
T ss_dssp HHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 999999998866542237899999999999977554
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=91.23 Aligned_cols=110 Identities=11% Similarity=-0.016 Sum_probs=89.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCe----EecCcc-ccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGT----EHLGLP-VFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~----~i~GvP-Vy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+..||.|+|+ |+||+.+++.+.+ .+.+++ |..|+....- +..|+| +|.+.+|+++..++|++++.+|+....
T Consensus 4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 81 (330)
T 3e9m_A 4 DKIRYGIMST-AQIVPRFVAGLRESAQAEVR-GIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHY 81 (330)
T ss_dssp CCEEEEECSC-CTTHHHHHHHHHHSSSEEEE-EEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHH
T ss_pred CeEEEEEECc-hHHHHHHHHHHHhCCCcEEE-EEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHH
Confidence 3478999999 9999999998887 468888 7777764221 123774 999999999877899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+.+..|+++|+++++-=.-..+.+|..+|.+++++--+
T Consensus 82 ~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~ 119 (330)
T 3e9m_A 82 SAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGV 119 (330)
T ss_dssp HHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998876643347899999999999976443
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=90.85 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=85.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHH--------hCCceEEeeccCCCCCeE----ecCcc-ccccHHHHHhccCCcEEEEe
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE--------YGTKMVVGGVTPKKGGTE----HLGLP-VFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~--------~g~~IV~AgVdp~~~G~~----i~GvP-Vy~Sv~ea~~~~~~DvaVdf 123 (182)
+..||.|+|+ |.+|+.+++.+.. .+.+|+ |-.|+...--+ ..|+| +|++.+|+++..++|++++.
T Consensus 24 kkirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lv-av~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Ia 101 (393)
T 4fb5_A 24 KPLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLV-HLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVT 101 (393)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEE-EEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEEC
T ss_pred CCccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEE-EEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEEC
Confidence 3478999998 9999988775542 247899 87777653211 13665 99999999987789999999
Q ss_pred eChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 124 VPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 124 Vpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+|+....+.+..|+++|+++++==-=..+.+|..+|.++|++-.+
T Consensus 102 tP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 146 (393)
T 4fb5_A 102 TPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGK 146 (393)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCC
Confidence 999999999999999998865421225889999999999966443
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-09 Score=94.03 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=90.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+..||.|+|+ |.||+.+++.+.+. +.+++ |..|+...-- +..|+|.|++++|+++..++|++++.+|+....+
T Consensus 4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~lv-av~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~ 81 (354)
T 3db2_A 4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLV-TCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAE 81 (354)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSSEEEE-EEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHH
T ss_pred CcceEEEEcc-CHHHHHHHHHHHhCCCcEEE-EEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence 4579999999 99999999988865 78988 7777764211 1248999999999997668999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+..|+++|+++++-=.-..+.+|..+|.+++++-.
T Consensus 82 ~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~ 117 (354)
T 3db2_A 82 VIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETG 117 (354)
T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcC
Confidence 999999999876654334789999999999997643
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-09 Score=89.89 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=86.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCC--CeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~--G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
+.+||.|+|+ |+||+.+++.+.+. +.+++ +.+|+... ......+++|++.+|+++..++|++++.+|+....+.+
T Consensus 9 ~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v-~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 86 (315)
T 3c1a_A 9 SPVRLALIGA-GRWGKNYIRTIAGLPGAALV-RLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEIT 86 (315)
T ss_dssp CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEE-EEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHHH
T ss_pred CcceEEEECC-cHHHHHHHHHHHhCCCcEEE-EEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHHH
Confidence 4578999999 99999999988874 68888 76666431 10111278999999998755799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 134 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+|+++|+++++-=.-.++.++..+|.++|++-.
T Consensus 87 ~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g 120 (315)
T 3c1a_A 87 LAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATG 120 (315)
T ss_dssp HHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcC
Confidence 9999999766644235678999999999997644
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-09 Score=93.55 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=88.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
..||.|+|+ |.||+.+++.+.+. +++++ |.+|+..... ...|+++|++++|+++..++|++++.+|+....+.+
T Consensus 5 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~-av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 82 (359)
T 3e18_A 5 KYQLVIVGY-GGMGSYHVTLASAADNLEVH-GVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELA 82 (359)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTSTTEEEE-EEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred cCcEEEECc-CHHHHHHHHHHHhCCCcEEE-EEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 478999999 99999999988765 68898 7767654211 124899999999999877899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 134 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
..|+++|+++++==--..+.+|..+|.++|++--
T Consensus 83 ~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g 116 (359)
T 3e18_A 83 ISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVN 116 (359)
T ss_dssp HHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhC
Confidence 9999999776543223688999999999997643
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=93.69 Aligned_cols=108 Identities=12% Similarity=-0.014 Sum_probs=87.7
Q ss_pred CCceEEEEccCCCCch-hhhHHHHHh-CCceEEeeccCCCCC-e---EecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 57 KNTRVICQGITGKNGT-FHTEQAIEY-GTKMVVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 57 ~~trViVvG~tGkmG~-~v~k~~~~~-g~~IV~AgVdp~~~G-~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+..||.|+|+ |+||+ .+.+.+.+. +.+++ |.+|+...- + +..|+|.|.+++|+++..++|++++.+|+....
T Consensus 26 ~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~-av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 103 (350)
T 3rc1_A 26 NPIRVGVIGC-ADIAWRRALPALEAEPLTEVT-AIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHA 103 (350)
T ss_dssp CCEEEEEESC-CHHHHHTHHHHHHHCTTEEEE-EEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHH
T ss_pred CceEEEEEcC-cHHHHHHHHHHHHhCCCeEEE-EEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHH
Confidence 3579999998 99998 788887765 68888 777765311 1 123899999999999866899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.+..|+++|+++++==.-..+.+|..+|.++|++-
T Consensus 104 ~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 104 EWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999988655322368999999999999664
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.3e-09 Score=88.16 Aligned_cols=109 Identities=10% Similarity=-0.046 Sum_probs=88.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe----EecCccccccHHHHHh---------ccCCcEEEEe
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKA---------ETKANASVIY 123 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~---------~~~~DvaVdf 123 (182)
+..||.|+|+.|.+|+.+.+.+.+.+.+++ |.+|+..... ...+.++|.+.+++++ ..++|++++.
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lv-av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~ 80 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLV-SAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSIC 80 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTTCEEE-EEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEEC
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCCCEEE-EEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEEC
Confidence 457999999988999999999888788999 8888765321 1247899999999873 4589999999
Q ss_pred eChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 124 VPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 124 Vpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+|+....+.+..|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 81 tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 81 SPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999977543211268999999999999764
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.7e-09 Score=88.31 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=85.5
Q ss_pred CceEEEEccCCCCchh-hhHHHHH-hCCceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTF-HTEQAIE-YGTKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~-v~k~~~~-~g~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.+||.|+|+ |+||+. +++.+.+ .+.+++ |.+|+....-+ ..|+|+|++.+++. .++|++++++|+....+
T Consensus 5 ~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lv-av~d~~~~~~~~~~~~~g~~~~~~~~~l~--~~~D~V~i~tp~~~h~~ 80 (319)
T 1tlt_A 5 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQ-GAWSPTRAKALPICESWRIPYADSLSSLA--ASCDAVFVHSSTASHFD 80 (319)
T ss_dssp CEEEEEECC-STHHHHTHHHHHHSCSSEEEE-EEECSSCTTHHHHHHHHTCCBCSSHHHHH--TTCSEEEECSCTTHHHH
T ss_pred cceEEEECC-CHHHHHHHHHHHHhCCCeEEE-EEECCCHHHHHHHHHHcCCCccCcHHHhh--cCCCEEEEeCCchhHHH
Confidence 478999999 999996 8887765 468888 77776653211 23788999998873 37999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+..|+++|+++++-=.-..+.+|..+|.++|++-.+
T Consensus 81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~ 117 (319)
T 1tlt_A 81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKL 117 (319)
T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998766543457889999999999976544
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-09 Score=91.80 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=86.7
Q ss_pred ceEEEEccCCCCch-hhhHHHHHh-CCceEEeeccCCCCCeEe------cCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGT-FHTEQAIEY-GTKMVVGGVTPKKGGTEH------LGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~-~v~k~~~~~-g~~IV~AgVdp~~~G~~i------~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.||.|+|+ |.+|+ .+.+.+.+. +.+|+ |.+++.. .++. .++++|.+++|+++..++|++++.+|+....
T Consensus 3 ~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~-av~d~~~-~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 79 (349)
T 3i23_A 3 VKMGFIGF-GKSANRYHLPYVMIRETLEVK-TIFDLHV-NEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHY 79 (349)
T ss_dssp EEEEEECC-SHHHHHTTHHHHTTCTTEEEE-EEECTTC-CHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHH
T ss_pred eEEEEEcc-CHHHHHHHHHHHhhCCCeEEE-EEECCCH-HHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHH
Confidence 68999999 99998 678877654 68999 8888873 3344 5789999999999877799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.+..|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 80 ~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (349)
T 3i23_A 80 DLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEK 115 (349)
T ss_dssp HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHc
Confidence 999999999976554211257899999999999763
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-09 Score=92.03 Aligned_cols=108 Identities=14% Similarity=0.093 Sum_probs=88.2
Q ss_pred CCceEEEEccCCCCchh-hhHHHHHh-CCceEEeeccCCCC--CeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~-v~k~~~~~-g~~IV~AgVdp~~~--G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+..||.|+|+ |.+|+. +.+.+.+. +++|+ |..|+... .....+.++|++++|+++..++|++++.+|+....+.
T Consensus 6 ~~~rvgiiG~-G~~g~~~~~~~~~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 83 (352)
T 3kux_A 6 DKIKVGLLGY-GYASKTFHAPLIMGTPGLELA-GVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPL 83 (352)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHHHTSTTEEEE-EEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHH
T ss_pred CCceEEEECC-CHHHHHHHHHHHhhCCCcEEE-EEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 4579999999 999996 88877754 68898 77666532 1224588999999999987679999999999999999
Q ss_pred HHHHHHcCCCEEEEeCC-CCCHHHHHHHHHHhcccc
Q 030169 133 IMEAMEAELDLVVCITE-GIPQHDMVINFTRVNILL 167 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTe-G~~~eD~~~l~~~ak~ip 167 (182)
+..|+++|+++++= -. ..+.+|..+|.++|++-.
T Consensus 84 ~~~al~aGkhV~~E-KPla~~~~e~~~l~~~a~~~g 118 (352)
T 3kux_A 84 AQSALAAGKHVVVD-KPFTVTLSQANALKEHADDAG 118 (352)
T ss_dssp HHHHHHTTCEEEEC-SSCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCcEEEE-CCCcCCHHHHHHHHHHHHHcC
Confidence 99999999765543 33 789999999999997643
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-09 Score=93.87 Aligned_cols=108 Identities=19% Similarity=0.273 Sum_probs=88.1
Q ss_pred CceEEEEccCC-CCchhhhHHHHHh-CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITG-KNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tG-kmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
..||.|+|+ | .+|+.+++.+.+. +++++ |.+|+...-. +..|+|+|.|++|+++..++|++++.+|+....+
T Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~-av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~ 79 (387)
T 3moi_A 2 KIRFGICGL-GFAGSVLMAPAMRHHPDAQIV-AACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCE 79 (387)
T ss_dssp CEEEEEECC-SHHHHTTHHHHHHHCTTEEEE-EEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHH
T ss_pred ceEEEEEeC-CHHHHHHHHHHHHhCCCeEEE-EEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHH
Confidence 478999999 8 9999999988764 68999 8888764211 1238999999999998778999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+..|+++|+++++==.-..+.+|..+|.++|++-.
T Consensus 80 ~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g 115 (387)
T 3moi_A 80 HVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAG 115 (387)
T ss_dssp HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhC
Confidence 999999999766543122678999999999997643
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=91.36 Aligned_cols=109 Identities=13% Similarity=-0.008 Sum_probs=88.1
Q ss_pred CCceEEEEccCCCCchh-hhHHHHHh-CCceEEeeccCCCC--CeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~-v~k~~~~~-g~~IV~AgVdp~~~--G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+..||.|+|+ |.+|+. +.+.+.+. +++++ |.+|+... .++..+.++|.+++|+++..++|++++.+|+....+.
T Consensus 4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 81 (362)
T 3fhl_A 4 EIIKTGLAAF-GMSGQVFHAPFISTNPHFELY-KIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEY 81 (362)
T ss_dssp CCEEEEESCC-SHHHHHTTHHHHHHCTTEEEE-EEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred CceEEEEECC-CHHHHHHHHHHHhhCCCeEEE-EEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 3479999999 999996 78877654 68898 76666542 2223489999999999987679999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
+..|+++|+++++==-=..+.+|..+|.++|++--
T Consensus 82 ~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g 116 (362)
T 3fhl_A 82 AGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKG 116 (362)
T ss_dssp HHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 99999999876654223689999999999997643
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-09 Score=92.27 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=85.1
Q ss_pred CCCeeeecCCceEEEEccCCCCchhh-hHHHHH-hCCceEEeeccCCCCC-eE---ecCcc-ccccHHHHHhccCCcEEE
Q 030169 49 SHPAVFVDKNTRVICQGITGKNGTFH-TEQAIE-YGTKMVVGGVTPKKGG-TE---HLGLP-VFNSVAEAKAETKANASV 121 (182)
Q Consensus 49 ~~~~~li~~~trViVvG~tGkmG~~v-~k~~~~-~g~~IV~AgVdp~~~G-~~---i~GvP-Vy~Sv~ea~~~~~~DvaV 121 (182)
...++.+.+..||.|+|+ |.+|+.+ .+.+.+ .+.+|+ |-.|+...- ++ ..|+| +|+|.+|+++..++|+++
T Consensus 14 ~~~n~~~~~mirigiIG~-G~ig~~~~~~~~~~~~~~~lv-av~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~ 91 (350)
T 4had_A 14 GTENLYFQSMLRFGIIST-AKIGRDNVVPAIQDAENCVVT-AIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVY 91 (350)
T ss_dssp --------CCEEEEEESC-CHHHHHTHHHHHHHCSSEEEE-EEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEE
T ss_pred CCccccccCccEEEEEcC-hHHHHHHHHHHHHhCCCeEEE-EEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEE
Confidence 344556667789999999 9999875 566665 468998 877775421 11 23776 899999999877899999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 122 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.+|+....+.+.+|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 92 I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 136 (350)
T 4had_A 92 IPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRN 136 (350)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHH
T ss_pred EeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHc
Confidence 999999999999999999987543111257889999999999653
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.6e-09 Score=87.34 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=85.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHH----hCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE----YGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~----~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+..||.|+|+ |.+|+.+.+.+.. .+.+++ |..++.... +..|+| |.+++|+++..++|++++.+|+....+.
T Consensus 6 ~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lv-av~d~~~~a-~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~ 81 (294)
T 1lc0_A 6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLI-GFVSRRELG-SLDEVR-QISLEDALRSQEIDVAYICSESSSHEDY 81 (294)
T ss_dssp CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEE-EEECSSCCC-EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred CcceEEEEEE-cHHHHHHHHHHhccccCCCEEEE-EEECchHHH-HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHH
Confidence 3578999999 9999999887764 358888 777776544 455788 7899999886689999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+..|+++|+++++==--..+.+|..+|.++|++
T Consensus 82 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 114 (294)
T 1lc0_A 82 IRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQ 114 (294)
T ss_dssp HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999998766532235689999999999964
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-09 Score=89.33 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=85.4
Q ss_pred CCceEEEEccCCCCchhhhHHHH-H-hCCceEEeeccCCCCCe----EecCc-cccccHHHHHhccCCcEEEEeeChHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAI-E-YGTKMVVGGVTPKKGGT----EHLGL-PVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~-~-~g~~IV~AgVdp~~~G~----~i~Gv-PVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
+..||.|+|+ |.||+.+++.+. + .+.+++ +..|+...-. +..|+ ++|++++|+++..++|++++++|+...
T Consensus 7 ~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~v-av~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h 84 (346)
T 3cea_A 7 KPLRAAIIGL-GRLGERHARHLVNKIQGVKLV-AACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH 84 (346)
T ss_dssp CCEEEEEECC-STTHHHHHHHHHHTCSSEEEE-EEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH
T ss_pred CcceEEEEcC-CHHHHHHHHHHHhcCCCcEEE-EEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH
Confidence 4578999999 999999999887 4 468888 7667654211 12366 689999999876679999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+.+.+|+++|+++++-=.-..+.++..+|.+++++-
T Consensus 85 ~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~ 121 (346)
T 3cea_A 85 PEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSH 121 (346)
T ss_dssp HHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhC
Confidence 9999999999975554323467899999999998655
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.5e-09 Score=89.56 Aligned_cols=106 Identities=11% Similarity=0.039 Sum_probs=84.0
Q ss_pred ceEEEEccCCCCchhh-hHHHHHhCCceEEeeccCCCCCe----EecCcc-ccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFH-TEQAIEYGTKMVVGGVTPKKGGT----EHLGLP-VFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v-~k~~~~~g~~IV~AgVdp~~~G~----~i~GvP-Vy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+||.|+|+ |+||+.+ .+.+.+.+.+++ +.+|+...-. +..|+| +|++++|+++..++|++++.+|+....+.
T Consensus 1 ~~vgiiG~-G~~g~~~~~~~l~~~~~~~v-av~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~ 78 (332)
T 2glx_A 1 NRWGLIGA-STIAREWVIGAIRATGGEVV-SMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQ 78 (332)
T ss_dssp CEEEEESC-CHHHHHTHHHHHHHTTCEEE-EEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred CeEEEEcc-cHHHHHhhhHHhhcCCCeEE-EEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHH
Confidence 47999999 9999998 777777678888 7777654211 123676 89999999876579999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.+|+++|+++++-=.-..+.+|..+|.++|++-
T Consensus 79 ~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~ 112 (332)
T 2glx_A 79 TLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREA 112 (332)
T ss_dssp HHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 9999999976554212467899999999998653
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-08 Score=86.07 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=84.0
Q ss_pred CceEEEEccCCCCch-hhhHHHHHhCCceEEeeccCCCCCe-----EecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGT-FHTEQAIEYGTKMVVGGVTPKKGGT-----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~-~v~k~~~~~g~~IV~AgVdp~~~G~-----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
..||.|+|+ |++|. .+.+.+...+.+++ |..|+...-- ...+.++|++++|+++..++|++++.+|+....+
T Consensus 4 ~~rvgiiG~-G~~~~~~~~~~l~~~~~~lv-av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 81 (336)
T 2p2s_A 4 KIRFAAIGL-AHNHIYDMCQQLIDAGAELA-GVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE 81 (336)
T ss_dssp CCEEEEECC-SSTHHHHHHHHHHHTTCEEE-EEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred ccEEEEECC-ChHHHHHhhhhhcCCCcEEE-EEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHH
Confidence 478999998 99986 45666666689988 7666654221 1237899999999998668999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+..|+++|+++++==--..+.+|..+|.++|++-
T Consensus 82 ~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (336)
T 2p2s_A 82 LALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAET 116 (336)
T ss_dssp HHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 99999999987554212347889999999999654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-09 Score=89.76 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=87.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
.||.|+|+ |.||+.+++.+.+. +.+++ |..|+....- +..|+| |++++|+++..++|++++.+|+....+.+
T Consensus 4 ~~vgiiG~-G~~g~~~~~~l~~~~~~~l~-av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 80 (331)
T 4hkt_A 4 VRFGLLGA-GRIGKVHAKAVSGNADARLV-AVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI 80 (331)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCTTEEEE-EEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred eEEEEECC-CHHHHHHHHHHhhCCCcEEE-EEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH
Confidence 68999999 99999999988864 68898 7777754211 124889 99999999877899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 134 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
..|+++|+++++-=.-..+.+|..+|.+++++-.+
T Consensus 81 ~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~ 115 (331)
T 4hkt_A 81 ERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKA 115 (331)
T ss_dssp HHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 99999997655432237899999999999976443
|
| >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.6e-09 Score=96.12 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=59.0
Q ss_pred ecCccccccHHHHHhcc-CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 99 HLGLPVFNSVAEAKAET-KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 99 i~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
-.++|||+++.++.+.. .+|++|++||+..+.++++||+++|++ +|+||+||+.+++.+|.+.|++
T Consensus 18 ~~~~Pv~~~~~~~~~~p~~~DlavI~vPa~~v~~~v~e~~~~Gv~-~viis~Gf~~~~~~~l~~~A~~ 84 (480)
T 3dmy_A 18 SQALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLN-VMMFSDNVTLEDEIQLKTRARE 84 (480)
T ss_dssp --CCEEESSHHHHHHHSTTCCEEEECSCHHHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHHHH
T ss_pred CCCCcccchHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHhcCCC-EEEECCCCCHHHHHHHHHHHHH
Confidence 34799999988887654 799999999999999999999999999 7888999999999999999975
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.82 E-value=6e-09 Score=90.25 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=91.6
Q ss_pred CceEEEEccCCCCchhhhHHHH-H-hCCceEEeeccCCCCCeE----ecC--ccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAI-E-YGTKMVVGGVTPKKGGTE----HLG--LPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~-~-~g~~IV~AgVdp~~~G~~----i~G--vPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
..||.|+|+ |.||+.+++.+. + .+.+++ |.+|+....-+ ..| .++|.+++|+++..++|++++.+|+...
T Consensus 23 ~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lv-av~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 100 (357)
T 3ec7_A 23 TLKAGIVGI-GMIGSDHLRRLANTVSGVEVV-AVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH 100 (357)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTCTTEEEE-EEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred eeeEEEECC-cHHHHHHHHHHHhhCCCcEEE-EEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 478999999 999999999887 4 468888 77777653211 124 7899999999987689999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchh--cchhhhh
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA--FLNFIMK 176 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~--~~~~~~~ 176 (182)
.+.+..|+++|+++++==--..+.+|..+|.++|++-.+- ..+|.++
T Consensus 101 ~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R 149 (357)
T 3ec7_A 101 ADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRR 149 (357)
T ss_dssp HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGG
T ss_pred HHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 9999999999976655322368999999999999765542 2455443
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.9e-09 Score=89.39 Aligned_cols=110 Identities=8% Similarity=0.014 Sum_probs=87.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe-E---ecC----ccccccHHHHHhccCCcEEEEeeChH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT-E---HLG----LPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~-~---i~G----vPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
+..||.|+|+ |+||+.+++.+.+. +.+++ +..|+....- . ..| .++|++++|+++..++|++++++|+.
T Consensus 5 ~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv-~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 82 (362)
T 1ydw_A 5 TQIRIGVMGC-ADIARKVSRAIHLAPNATIS-GVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS 82 (362)
T ss_dssp -CEEEEEESC-CTTHHHHHHHHHHCTTEEEE-EEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred CceEEEEECc-hHHHHHHHHHHhhCCCcEEE-EEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH
Confidence 3578999999 99999999888764 58888 7777654210 1 124 57899999998866799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
...+.+.+|+++|+++++-=.-.++.+|..+|.++|++-.+
T Consensus 83 ~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~ 123 (362)
T 1ydw_A 83 LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV 123 (362)
T ss_dssp GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 99999999999998665432246899999999999976544
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.8e-09 Score=90.55 Aligned_cols=109 Identities=15% Similarity=0.059 Sum_probs=86.9
Q ss_pred CCceEEEEccCCCCchh-hhHHHHHh-CCceEEeeccCCCC--CeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~-v~k~~~~~-g~~IV~AgVdp~~~--G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+..||.|+|+ |++|+. +.+.+.+. +++++ |.+|+... .....+.++|.+++|+++..++|++++.+|+....+.
T Consensus 6 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~ 83 (364)
T 3e82_A 6 NTINIALIGY-GFVGKTFHAPLIRSVPGLNLA-FVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPL 83 (364)
T ss_dssp -CEEEEEECC-SHHHHHTHHHHHHTSTTEEEE-EEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHH
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCeEEE-EEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 4579999999 999995 77777754 68898 77666541 1224589999999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
+..|+++|+++++-=-=..+.+|..+|.++|++-.
T Consensus 84 ~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g 118 (364)
T 3e82_A 84 ARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQ 118 (364)
T ss_dssp HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhC
Confidence 99999999765442112789999999999997643
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.1e-09 Score=91.68 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=86.2
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHh---------CCceEEeeccCCCCCe----EecCc-cccccHHHHHhccCCcEE
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEY---------GTKMVVGGVTPKKGGT----EHLGL-PVFNSVAEAKAETKANAS 120 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~---------g~~IV~AgVdp~~~G~----~i~Gv-PVy~Sv~ea~~~~~~Dva 120 (182)
+.+..||.|+|+ |.+|+.+++.+.+. +.+|+ |..|+...-- +..|+ ++|++.+|+++..++|++
T Consensus 23 Ms~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elv-av~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V 100 (412)
T 4gqa_A 23 MSARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLY-ALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVV 100 (412)
T ss_dssp --CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEE-EEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEE
T ss_pred ccccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEE-EEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEE
Confidence 345689999998 99999998877643 36888 8777764211 11255 599999999987789999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
++.+|+....+.+.+|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 101 ~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 146 (412)
T 4gqa_A 101 DITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRA 146 (412)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987654322358999999999999653
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.5e-09 Score=87.54 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=85.5
Q ss_pred CceEEEEccCCCCchh-hhHHHHH-hCCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTF-HTEQAIE-YGTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~-v~k~~~~-~g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
..||.|+|+ |+||+. +.+.+.+ .+.+++ |.+|+...-- +..|+|.|++++|+++ ++|++++.+|+....+
T Consensus 6 ~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~-av~d~~~~~~~~~a~~~~~~~~~~~~~ll~--~~D~V~i~tp~~~h~~ 81 (308)
T 3uuw_A 6 NIKMGMIGL-GSIAQKAYLPILTKSERFEFV-GAFTPNKVKREKICSDYRIMPFDSIESLAK--KCDCIFLHSSTETHYE 81 (308)
T ss_dssp CCEEEEECC-SHHHHHHTHHHHTSCSSSEEE-EEECSCHHHHHHHHHHHTCCBCSCHHHHHT--TCSEEEECCCGGGHHH
T ss_pred cCcEEEEec-CHHHHHHHHHHHHhCCCeEEE-EEECCCHHHHHHHHHHcCCCCcCCHHHHHh--cCCEEEEeCCcHhHHH
Confidence 478999999 999996 7887775 568998 7777764211 1237888999999998 8999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+..|+++|+++++==.-..+.+|..+|.+++++-
T Consensus 82 ~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 82 IIKILLNLGVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp HHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 99999999988443223568999999999999763
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.3e-09 Score=88.51 Aligned_cols=107 Identities=11% Similarity=-0.044 Sum_probs=84.4
Q ss_pred ceEEEEccCCCCchh-hhH-HHH-HhCCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTF-HTE-QAI-EYGTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~-v~k-~~~-~~g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.||.|+|+ |+||+. +.+ .+. ..+.+++ |.+|+..... +..++++|+|++|+++..++|++++.+|+....+
T Consensus 3 ~rvgiiG~-G~~g~~~~~~~~~~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 80 (345)
T 3f4l_A 3 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVA-HIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 80 (345)
T ss_dssp EEEEEECC-SHHHHHHTHHHHTTCTTTEEEE-EEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHH
T ss_pred eEEEEEec-CHHHHHHHHHHHHhcCCCeEEE-EEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHH
Confidence 68999999 999984 777 434 3468998 8777754221 2348899999999998667999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+..|+++|+++++==--..+.+|..+|.+++++--
T Consensus 81 ~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g 116 (345)
T 3f4l_A 81 YAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKG 116 (345)
T ss_dssp HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999655432112689999999999997643
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-09 Score=89.06 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=86.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----EecCcc-ccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----EHLGLP-VFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----~i~GvP-Vy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+||.|+|+ |.||+.+++.+.+. +.+++ |..|+....- +..|++ +|.+++|+++..++|++++.+|+....+.
T Consensus 3 ~rvgiIG~-G~~g~~~~~~l~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 80 (344)
T 3ezy_A 3 LRIGVIGL-GRIGTIHAENLKMIDDAILY-AISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSEL 80 (344)
T ss_dssp EEEEEECC-SHHHHHHHHHGGGSTTEEEE-EEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCCcEEE-EEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHH
Confidence 58999999 99999999988764 68888 7777754211 123665 99999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.+|+++|+++++-=.-.++.++..+|.+++++-
T Consensus 81 ~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~ 114 (344)
T 3ezy_A 81 VIACAKAKKHVFCEKPLSLNLADVDRMIEETKKA 114 (344)
T ss_dssp HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999977665422379999999999999764
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-09 Score=89.98 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=87.2
Q ss_pred ceEEEEccCCCCchhhhHHHH-H-hCCceEEeeccCCCCCe----EecC--ccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAI-E-YGTKMVVGGVTPKKGGT----EHLG--LPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~-~g~~IV~AgVdp~~~G~----~i~G--vPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.||.|+|+ |.||+.+++.+. + .+.+++ |.+|+...-- +..| .++|++++|+++..++|++++.+|+....
T Consensus 3 ~rigiIG~-G~~g~~~~~~l~~~~~~~~l~-av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 80 (344)
T 3mz0_A 3 LRIGVIGT-GAIGKEHINRITNKLSGAEIV-AVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHE 80 (344)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTCSSEEEE-EEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred EEEEEECc-cHHHHHHHHHHHhhCCCcEEE-EEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHH
Confidence 58999999 999999999888 4 468898 7777754211 1135 68999999999866799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+.+..|+++|+++++==.-..+.+|..+|.++|++-.+
T Consensus 81 ~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~ 118 (344)
T 3mz0_A 81 SSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGK 118 (344)
T ss_dssp HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCC
Confidence 99999999997655431226899999999999977544
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.77 E-value=6.6e-09 Score=89.85 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=87.0
Q ss_pred CCceEEEEccCCCCchh-hhHHHHHh-CCceEEeeccCCCC--CeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~-v~k~~~~~-g~~IV~AgVdp~~~--G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+..||.|+|+ |.+|+. +.+.+.+. +.+++ |..|+... ..+..+.++|++++|+++..++|++++.+|+....+.
T Consensus 4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 81 (358)
T 3gdo_A 4 DTIKVGILGY-GLSGSVFHGPLLDVLDEYQIS-KIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEH 81 (358)
T ss_dssp TCEEEEEECC-SHHHHHTTHHHHTTCTTEEEE-EEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHH
T ss_pred CcceEEEEcc-CHHHHHHHHHHHhhCCCeEEE-EEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 3479999999 999985 78877654 68898 77776541 1123489999999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+..|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 82 ~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~ 115 (358)
T 3gdo_A 82 TMACIQAGKHVVMEKPMTATAEEGETLKRAADEK 115 (358)
T ss_dssp HHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence 9999999976554311268999999999999763
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.9e-09 Score=88.34 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=78.8
Q ss_pred CceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..||.|+|+ |++|+.+++.+.+ .+++++ |.+|+....-+..|++ |.+.+++.+..++|++++++|+....+.+..|
T Consensus 9 ~irv~IIG~-G~iG~~~~~~l~~~~~~elv-av~d~~~~~~~~~g~~-~~~~~~l~~~~~~DvViiatp~~~h~~~~~~a 85 (304)
T 3bio_A 9 KIRAAIVGY-GNIGRYALQALREAPDFEIA-GIVRRNPAEVPFELQP-FRVVSDIEQLESVDVALVCSPSREVERTALEI 85 (304)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCTTEEEE-EEECC-------CCTT-SCEESSGGGSSSCCEEEECSCHHHHHHHHHHH
T ss_pred CCEEEEECC-hHHHHHHHHHHhcCCCCEEE-EEEcCCHHHHHHcCCC-cCCHHHHHhCCCCCEEEECCCchhhHHHHHHH
Confidence 479999999 9999999998876 568888 6555543211125676 44444433324799999999999999999999
Q ss_pred HHcCCCEEEEeC-CCCCHHHHHHHHHHhcccc
Q 030169 137 MEAELDLVVCIT-EGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 137 ie~GIk~VV~iT-eG~~~eD~~~l~~~ak~ip 167 (182)
+++|+++++--. ++...++..+|.+++++-.
T Consensus 86 l~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g 117 (304)
T 3bio_A 86 LKKGICTADSFDIHDGILALRRSLGDAAGKSG 117 (304)
T ss_dssp HTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence 999998765422 3788999999999997654
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=88.20 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=84.9
Q ss_pred CceEEEEccCCCCchh-hhHHHHHh-CCceEEeeccCCCCC-----eEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTF-HTEQAIEY-GTKMVVGGVTPKKGG-----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~-v~k~~~~~-g~~IV~AgVdp~~~G-----~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
..||.|+|+ |.+|+. +.+.+.+. +.+++ |.+|+...- ++..+.++|++++|+++..++|++++.+|+....
T Consensus 5 ~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~-av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 82 (359)
T 3m2t_A 5 LIKVGLVGI-GAQMQENLLPSLLQMQDIRIV-AACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF 82 (359)
T ss_dssp CEEEEEECC-SHHHHHTHHHHHHTCTTEEEE-EEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH
T ss_pred cceEEEECC-CHHHHHHHHHHHHhCCCcEEE-EEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 478999999 999985 77877754 68888 776765311 1124688999999999877899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.+.+|+++|+++++==--..+.+|..+|.+++++
T Consensus 83 ~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 83 EMGLLAMSKGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 99999999998755421126889999999999965
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-08 Score=85.83 Aligned_cols=107 Identities=11% Similarity=0.039 Sum_probs=85.3
Q ss_pred CceEEEEccCCCCchh-hhHHHHHhCCceEEeeccCCCCCe-----EecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTF-HTEQAIEYGTKMVVGGVTPKKGGT-----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~-v~k~~~~~g~~IV~AgVdp~~~G~-----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
..||.|+|+ |.+|.. +.+.+...+.+++ |..|+...-- +..+.++|.+++|+++..++|++++.+|+....+
T Consensus 26 ~irvgiiG~-G~~~~~~~~~~~~~~~~~lv-av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~ 103 (361)
T 3u3x_A 26 ELRFAAVGL-NHNHIYGQVNCLLRAGARLA-GFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAE 103 (361)
T ss_dssp CCEEEEECC-CSTTHHHHHHHHHHTTCEEE-EEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHH
T ss_pred CcEEEEECc-CHHHHHHHHHHhhcCCcEEE-EEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence 579999998 998854 5666667789999 8877764211 1234789999999998778999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+..|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 104 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 138 (361)
T 3u3x_A 104 LAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAET 138 (361)
T ss_dssp HHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 99999999987655322367899999999999763
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=87.81 Aligned_cols=111 Identities=12% Similarity=0.054 Sum_probs=87.2
Q ss_pred eecCCceEEEEccCC-CCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCc-cccccHHHHHhccCCcEEEEeeC
Q 030169 54 FVDKNTRVICQGITG-KNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGL-PVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 54 li~~~trViVvG~tG-kmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~Gv-PVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
.-++..||.|+|+ | .+|+.+.+.+.+. +.+++ |-.|+...-- +..|+ ++|++++|+++..++|++++.+|
T Consensus 14 ~~~~~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lv-av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 14 KPLRKIRLGIVGC-GIAARELHLPALKNLSHLFEIT-AVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp --CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEE-EEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCC
T ss_pred CCCCceeEEEEec-CHHHHHHHHHHHHhCCCceEEE-EEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 4556789999998 8 8999999988865 58888 7777654211 11255 89999999998778999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+....+.+..|+++|+++++==--..+.+|..+|.++|++-
T Consensus 92 ~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 132 (340)
T 1zh8_A 92 VELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKS 132 (340)
T ss_dssp GGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 99999999999999976554322357999999999999653
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-08 Score=89.02 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=88.1
Q ss_pred CCceEEEEcc---CCCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCcc---ccccHHHHHhccCCcEEEEee
Q 030169 57 KNTRVICQGI---TGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLP---VFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 57 ~~trViVvG~---tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvP---Vy~Sv~ea~~~~~~DvaVdfV 124 (182)
+..||.|+|+ .|.+|+.+++.+.+. +.+|+ |..|+...-- +..|+| +|.+++|+++..++|++++.+
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lv-av~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~t 97 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQIT-ALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAI 97 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEE-EEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECS
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEE-EEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeC
Confidence 4579999999 599999999988875 68898 7777654210 123666 999999999866899999999
Q ss_pred ChHHHHHHHHHHHHcCC-----CEEEEe-CCCCCHHHHHHHHHHhcccc
Q 030169 125 PPPFAAAAIMEAMEAEL-----DLVVCI-TEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 125 pp~av~~a~~eAie~GI-----k~VV~i-TeG~~~eD~~~l~~~ak~ip 167 (182)
|+....+.+..|+++|. +.|+|= .-..+.+|..+|.++|++-.
T Consensus 98 p~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g 146 (438)
T 3btv_A 98 QVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERG 146 (438)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcC
Confidence 99999999999999992 445552 24688999999999996643
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.7e-09 Score=91.99 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=83.3
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
.+..||+|+|+ | +|+.+.+.+.+. +++++ |-+++...-. +..|+|+|.|++|+++ ++|++++.+|....
T Consensus 5 ~~~~rv~VvG~-G-~g~~h~~a~~~~~~~~elv-av~~~~~~~a~~~a~~~gv~~~~~~~~l~~--~~D~v~i~~p~~~h 79 (372)
T 4gmf_A 5 SPKQRVLIVGA-K-FGEMYLNAFMQPPEGLELV-GLLAQGSARSRELAHAFGIPLYTSPEQITG--MPDIACIVVRSTVA 79 (372)
T ss_dssp --CEEEEEECS-T-TTHHHHHTTSSCCTTEEEE-EEECCSSHHHHHHHHHTTCCEESSGGGCCS--CCSEEEECCC--CT
T ss_pred CCCCEEEEEeh-H-HHHHHHHHHHhCCCCeEEE-EEECCCHHHHHHHHHHhCCCEECCHHHHhc--CCCEEEEECCCccc
Confidence 45689999997 8 899998877653 58999 8778765211 1348999999999988 79999999998776
Q ss_pred ----HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 130 ----AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 130 ----~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
.+++..|+++|+++++= =. ++.+|..+|.++|++--|-
T Consensus 80 ~~~~~~~a~~al~aGkhVl~E-KP-l~~~ea~~l~~~A~~~g~~ 121 (372)
T 4gmf_A 80 GGAGTQLARHFLARGVHVIQE-HP-LHPDDISSLQTLAQEQGCC 121 (372)
T ss_dssp TSHHHHHHHHHHHTTCEEEEE-SC-CCHHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHcCCcEEEe-cC-CCHHHHHHHHHHHHHcCCE
Confidence 89999999999987664 33 7889999999999764443
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.9e-09 Score=89.86 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=83.5
Q ss_pred CCceEEEEccCCCCchh-hh----HHHHHhC-CceE----------EeeccCCCCCe--EecCcc-ccccHHHHHhccCC
Q 030169 57 KNTRVICQGITGKNGTF-HT----EQAIEYG-TKMV----------VGGVTPKKGGT--EHLGLP-VFNSVAEAKAETKA 117 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~-v~----k~~~~~g-~~IV----------~AgVdp~~~G~--~i~GvP-Vy~Sv~ea~~~~~~ 117 (182)
+..||.|+|+.|.||+. +. +.+.+.+ .+++ ++..++.+... +..|+| +|++++|+++..++
T Consensus 5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~i 84 (383)
T 3oqb_A 5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKND 84 (383)
T ss_dssp EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSC
T ss_pred ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCC
Confidence 34789999977999998 88 7776554 4331 14555544221 124775 89999999987789
Q ss_pred cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 118 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 118 DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
|++++.+|+....+.+.+|+++|+++++==--..+.+|..+|.++|++-
T Consensus 85 D~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~ 133 (383)
T 3oqb_A 85 TMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSK 133 (383)
T ss_dssp CEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred CEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999987553212258999999999999663
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-08 Score=85.85 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=84.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCe----EecCcc-ccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGT----EHLGLP-VFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~----~i~GvP-Vy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.||.|+|+ |.+|+.+++.+.+.+ .+++ |..|+...-- +..|+| +|++++|+++..++|++++.+|+....
T Consensus 3 ~rigiiG~-G~ig~~~~~~l~~~~~~~~~l~-av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 80 (334)
T 3ohs_X 3 LRWGIVSV-GLISSDFTAVLQTLPRSEHQVV-AVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHK 80 (334)
T ss_dssp EEEEEECC-SHHHHHHHHHHTTSCTTTEEEE-EEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred cEEEEECc-hHHHHHHHHHHHhCCCCCeEEE-EEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHH
Confidence 68999998 999999998887543 5788 7777754110 123775 899999999877899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.+.+|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 81 ~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (334)
T 3ohs_X 81 AAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSR 116 (334)
T ss_dssp HHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999976554312367899999999999663
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-08 Score=91.14 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=85.6
Q ss_pred CCceEEEEccCCCCch-hhhHHHHHh-CCceEEeeccCCCCCe----EecCcc-----ccccHHHHHhccCCcEEEEeeC
Q 030169 57 KNTRVICQGITGKNGT-FHTEQAIEY-GTKMVVGGVTPKKGGT----EHLGLP-----VFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~-~v~k~~~~~-g~~IV~AgVdp~~~G~----~i~GvP-----Vy~Sv~ea~~~~~~DvaVdfVp 125 (182)
+..||.|+|+ |+||+ .+++.+.+. +.+++ |.+|+...-- +..|+| +|.+.+|+++..++|++++++|
T Consensus 82 ~~irigiIG~-G~~g~~~~~~~l~~~~~~~lv-av~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp 159 (433)
T 1h6d_A 82 RRFGYAIVGL-GKYALNQILPGFAGCQHSRIE-ALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILP 159 (433)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHTTTCSSEEEE-EEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSC
T ss_pred CceEEEEECC-cHHHHHHHHHHHhhCCCcEEE-EEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCC
Confidence 4579999999 99997 888887764 58888 7777654210 113555 7999999988668999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
+....+.+.+|+++|+++++-=.-.++.+|..+|.+++++-.
T Consensus 160 ~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g 201 (433)
T 1h6d_A 160 NSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAAN 201 (433)
T ss_dssp GGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999864432124678999999999996543
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.9e-08 Score=82.94 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=84.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--CeEe------cC--ccccccHHHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--GTEH------LG--LPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--G~~i------~G--vPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.||.|+|+ |.+|..+.+.+ ..+.+|+ |..|+... .+.. .| .++|++++|+++..++|++++.+|+..
T Consensus 3 ~rvgiiG~-G~~~~~~~~~l-~~~~~lv-av~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~ 79 (337)
T 3ip3_A 3 LKICVIGS-SGHFRYALEGL-DEECSIT-GIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL 79 (337)
T ss_dssp EEEEEECS-SSCHHHHHTTC-CTTEEEE-EEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred eEEEEEcc-chhHHHHHHhc-CCCcEEE-EEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence 68999998 87888877766 6678999 87776542 1111 13 589999999998778999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
..+.+..|+++|+++++==--..+.+|..+|.++|++-.
T Consensus 80 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 118 (337)
T 3ip3_A 80 NGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVR 118 (337)
T ss_dssp HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999885542223578899999999997743
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-08 Score=85.16 Aligned_cols=103 Identities=10% Similarity=-0.034 Sum_probs=79.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--------CceEEeeccCCCCCe----EecCc-cccccHHHHHhccCCcEEEEeeC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--------TKMVVGGVTPKKGGT----EHLGL-PVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--------~~IV~AgVdp~~~G~----~i~Gv-PVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
.||.|+|+ |.+|+.+++.+.+.. .+|+ |-.|+...-- +..|+ ++|++.+|+++..++|++++.+|
T Consensus 7 lrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~l~-av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP 84 (390)
T 4h3v_A 7 LGIGLIGY-AFMGAAHSQAWRSAPRFFDLPLHPDLN-VLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTP 84 (390)
T ss_dssp EEEEEECH-HHHHHHHHHHHHHHHHHSCCSSEEEEE-EEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSC
T ss_pred CcEEEEcC-CHHHHHHHHHHHhCccccccccCceEE-EEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 58999999 999999988666432 3777 7666654110 11355 48999999998778999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
+....+.+.+|+++|+++++==-=..+.+|..+|.+++
T Consensus 85 ~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~ 122 (390)
T 4h3v_A 85 GDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAA 122 (390)
T ss_dssp GGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHH
Confidence 99999999999999987654322357889999996663
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8e-08 Score=85.58 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=84.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCe-E------ecC---ccccc----cHHHHHhccCCcEEE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGT-E------HLG---LPVFN----SVAEAKAETKANASV 121 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~-~------i~G---vPVy~----Sv~ea~~~~~~DvaV 121 (182)
+..||.|+|+ |.+|+.+++.+.+ .+.+|+ |..|+...-- . ..| .++|. +++|+++..++|+++
T Consensus 19 ~~~rvgiIG~-G~~g~~h~~~l~~~~~~~lv-av~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~ 96 (444)
T 2ixa_A 19 KKVRIAFIAV-GLRGQTHVENMARRDDVEIV-AFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVF 96 (444)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTCTTEEEE-EEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEE
T ss_pred CCceEEEEec-CHHHHHHHHHHHhCCCcEEE-EEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEE
Confidence 3579999998 9999999988876 468888 7777654210 1 013 67899 999999876899999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 122 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.+|+....+.+..|+++|+++++=---..+.+|..+|.++|++-
T Consensus 97 i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~ 141 (444)
T 2ixa_A 97 VSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQT 141 (444)
T ss_dssp ECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999986543211257899999999998653
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.1e-08 Score=87.14 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=87.2
Q ss_pred CCceEEEEccC---CCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCcc---ccccHHHHHhccCCcEEEEee
Q 030169 57 KNTRVICQGIT---GKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLP---VFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 57 ~~trViVvG~t---GkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvP---Vy~Sv~ea~~~~~~DvaVdfV 124 (182)
+..||.|+|+. |.+|+.+++.+.+. +++|+ |..|+...-- +..|+| +|.+++|+++..++|++++.+
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lv-av~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~t 116 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIV-ALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV 116 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEE-EEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEE-EEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcC
Confidence 35799999994 89999999988865 68898 7777654210 123676 999999999866899999999
Q ss_pred ChHHHHHHHHHHHHcCC-----CEEEEeC-CCCCHHHHHHHHHHhcccc
Q 030169 125 PPPFAAAAIMEAMEAEL-----DLVVCIT-EGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 125 pp~av~~a~~eAie~GI-----k~VV~iT-eG~~~eD~~~l~~~ak~ip 167 (182)
|+....+.+.+|+++|+ +.|+|=- -..+.+|..+|.++|++--
T Consensus 117 p~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g 165 (479)
T 2nvw_A 117 KVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA 165 (479)
T ss_dssp CHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred CcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence 99999999999999993 5566512 2578999999999996543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.7e-08 Score=83.92 Aligned_cols=108 Identities=18% Similarity=0.070 Sum_probs=83.9
Q ss_pred CceEEEEccCCC---CchhhhHHHHHhC-CceEEee-ccCCCCCe----EecCc---cccccHHHHHhc-----cCCcEE
Q 030169 58 NTRVICQGITGK---NGTFHTEQAIEYG-TKMVVGG-VTPKKGGT----EHLGL---PVFNSVAEAKAE-----TKANAS 120 (182)
Q Consensus 58 ~trViVvG~tGk---mG~~v~k~~~~~g-~~IV~Ag-Vdp~~~G~----~i~Gv---PVy~Sv~ea~~~-----~~~Dva 120 (182)
..||.|+|+ |. +|+.+...+...+ ++++ |+ .|+...-- +..|+ ++|++++|+++. .++|++
T Consensus 12 ~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lv-a~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V 89 (398)
T 3dty_A 12 PIRWAMVGG-GSQSQIGYIHRCAALRDNTFVLV-AGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAV 89 (398)
T ss_dssp CEEEEEEEC-CTTCSSHHHHHHHHHGGGSEEEE-EEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEE
T ss_pred cceEEEEcC-CccchhHHHHHHHHhhCCCeEEE-EEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEE
Confidence 479999998 99 9999988777554 8898 74 46643111 12477 699999999875 359999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
++.+|+....+.+.+|+++|+++++==--..+.+|..+|.++|++--
T Consensus 90 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 136 (398)
T 3dty_A 90 SIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHN 136 (398)
T ss_dssp EEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTT
T ss_pred EECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999865441112589999999999996643
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.4e-08 Score=84.59 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=83.8
Q ss_pred CCceEEEEccCCC---CchhhhHHHHHhC-CceEEee-ccCCCCCe----EecCc---cccccHHHHHhc-----cCCcE
Q 030169 57 KNTRVICQGITGK---NGTFHTEQAIEYG-TKMVVGG-VTPKKGGT----EHLGL---PVFNSVAEAKAE-----TKANA 119 (182)
Q Consensus 57 ~~trViVvG~tGk---mG~~v~k~~~~~g-~~IV~Ag-Vdp~~~G~----~i~Gv---PVy~Sv~ea~~~-----~~~Dv 119 (182)
+..||.|+|+ |+ +|+.+...+...+ ++++ |+ +|+...-- +..|+ ++|++++|+++. .++|+
T Consensus 36 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lv-a~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~ 113 (417)
T 3v5n_A 36 KRIRLGMVGG-GSGAFIGAVHRIAARLDDHYELV-AGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEA 113 (417)
T ss_dssp CCEEEEEESC-C--CHHHHHHHHHHHHTSCEEEE-EEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSE
T ss_pred CcceEEEEcC-CCchHHHHHHHHHHhhCCCcEEE-EEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcE
Confidence 4579999998 98 9999988777655 7888 74 45543110 12377 599999999885 56999
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 120 SVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+++.+|+....+.+..|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 114 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 160 (417)
T 3v5n_A 114 VAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADES 160 (417)
T ss_dssp EEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHC
T ss_pred EEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999988554312267999999999999653
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-08 Score=89.25 Aligned_cols=109 Identities=14% Similarity=-0.030 Sum_probs=84.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeE-----e----------------------cCccccccH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTE-----H----------------------LGLPVFNSV 108 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~-----i----------------------~GvPVy~Sv 108 (182)
+..||.|+|+ |+||+.+.+.+.+ .+++++ |-.|+....-+ . .+.++|++.
T Consensus 22 k~IRVGIIGa-G~iG~~~~~~l~~~~~veLv-AV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ 99 (446)
T 3upl_A 22 KPIRIGLIGA-GEMGTDIVTQVARMQGIEVG-ALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDN 99 (446)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTSSSEEEE-EEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCH
T ss_pred CceEEEEECC-hHHHHHHHHHHhhCCCcEEE-EEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCH
Confidence 4589999999 9999999988774 468888 76665431100 0 136789999
Q ss_pred HHHHhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 109 AEAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 109 ~ea~~~~~~DvaVdfVpp-~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+++++..++|++++++|. ....+.+..|+++|++++.. ...+..++..+|.++|++--+
T Consensus 100 eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~-nk~l~~~eg~eL~~~A~e~Gv 159 (446)
T 3upl_A 100 DLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMM-NVEADVTIGPYLKAQADKQGV 159 (446)
T ss_dssp HHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEEC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEec-CcccCHHHHHHHHHHHHHhCC
Confidence 999987789999999974 67899999999999988864 555667788899999976433
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.6e-07 Score=68.23 Aligned_cols=89 Identities=10% Similarity=0.154 Sum_probs=69.9
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCC--CCeEecCccccc--cHHHHHhccCCcEEEEeeCh---H
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKK--GGTEHLGLPVFN--SVAEAKAETKANASVIYVPP---P 127 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~--~G~~i~GvPVy~--Sv~ea~~~~~~DvaVdfVpp---~ 127 (182)
++..+++|+|+ |..|+.+++.+.+. |++++ |-+|... .|+.+.|+|||. ++.+..+++++|.+++.+|. .
T Consensus 2 ~~~~~vlIiGa-G~~g~~l~~~l~~~~g~~vv-g~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~~~~ 79 (141)
T 3nkl_A 2 NAKKKVLIYGA-GSAGLQLANMLRQGKEFHPI-AFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSASQV 79 (141)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHHSSSEEEE-EEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTSCHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCcEEE-EEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCCCHH
Confidence 34578999999 99999999988754 79999 8777653 466788999987 35555566789999999874 3
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q 030169 128 FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~ 146 (182)
...++++.|.+.|++..+.
T Consensus 80 ~~~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 80 QKKVIIESLAKLHVEVLTI 98 (141)
T ss_dssp HHHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEC
Confidence 4578899999999997665
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-07 Score=79.43 Aligned_cols=102 Identities=9% Similarity=0.052 Sum_probs=84.8
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
.-..++||+++|+ |.+|+.+++. . +++++ +-.+ .+.| ++ |+.+.++++++++ ++|+++-..++.++.+.+
T Consensus 8 ~~~~~~rV~i~G~-GaIG~~v~~~--~-~leLv-~v~~-~k~g-el-gv~a~~d~d~lla--~pD~VVe~A~~~av~e~~ 77 (253)
T 1j5p_A 8 HHHHHMTVLIIGM-GNIGKKLVEL--G-NFEKI-YAYD-RISK-DI-PGVVRLDEFQVPS--DVSTVVECASPEAVKEYS 77 (253)
T ss_dssp ---CCCEEEEECC-SHHHHHHHHH--S-CCSEE-EEEC-SSCC-CC-SSSEECSSCCCCT--TCCEEEECSCHHHHHHHH
T ss_pred cccccceEEEECc-CHHHHHHHhc--C-CcEEE-EEEe-cccc-cc-CceeeCCHHHHhh--CCCEEEECCCHHHHHHHH
Confidence 3456899999999 9999999998 4 89999 7666 6656 34 8888999999986 899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCC--CHHHHHHHHHHhccc
Q 030169 134 MEAMEAELDLVVCITEGI--PQHDMVINFTRVNIL 166 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~--~~eD~~~l~~~ak~i 166 (182)
..+|++|+.+|+. +.|. ..+..++|.++|++-
T Consensus 78 ~~iL~aG~dvv~~-S~gaLad~~l~~~L~~aA~~g 111 (253)
T 1j5p_A 78 LQILKNPVNYIII-STSAFADEVFRERFFSELKNS 111 (253)
T ss_dssp HHHTTSSSEEEEC-CGGGGGSHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCEEEc-ChhhhcCHHHHHHHHHHHHHC
Confidence 9999999999987 6664 556678899988653
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.7e-07 Score=78.20 Aligned_cols=107 Identities=9% Similarity=0.059 Sum_probs=78.5
Q ss_pred ceEEEEccCCCCch-hhhHHHHHh-CCceEEeeccCCCCCe--EecCccc-cccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGT-FHTEQAIEY-GTKMVVGGVTPKKGGT--EHLGLPV-FNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~-~v~k~~~~~-g~~IV~AgVdp~~~G~--~i~GvPV-y~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
+||.|+|+ |+||+ .+++.+.+. +.+++++..++.+... +..|+|. |.+..|.+ ..++|++++.+|+....+.+
T Consensus 3 ~~igiIG~-G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l-~~~~D~V~i~tp~~~h~~~~ 80 (323)
T 1xea_A 3 LKIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVL-QYGVDAVMIHAATDVHSTLA 80 (323)
T ss_dssp EEEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGG-GGCCSEEEECSCGGGHHHHH
T ss_pred cEEEEECC-CHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHh-hcCCCEEEEECCchhHHHHH
Confidence 58999999 99998 588887754 5666634555443211 1236774 55545555 33899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 134 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+|+++|+++++-=.-.++.++..+|.++|++-.
T Consensus 81 ~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g 114 (323)
T 1xea_A 81 AFFLHLGIPTFVDKPLAASAQECENLYELAEKHH 114 (323)
T ss_dssp HHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcC
Confidence 9999999987654224578999999999986543
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.31 E-value=8.7e-07 Score=77.43 Aligned_cols=107 Identities=13% Similarity=0.015 Sum_probs=80.7
Q ss_pred ceEEEEccCCCCchhhhHHHHH---------hCCceEEeeccCCCCCeE-----------ecCccccc--cHHHHHhccC
Q 030169 59 TRVICQGITGKNGTFHTEQAIE---------YGTKMVVGGVTPKKGGTE-----------HLGLPVFN--SVAEAKAETK 116 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~---------~g~~IV~AgVdp~~~G~~-----------i~GvPVy~--Sv~ea~~~~~ 116 (182)
.||.|+|+ |.+|+.+++.+.+ .+.+|+ |-.|+...-.. ....++|+ +++++++..+
T Consensus 3 irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lv-aV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~ 80 (327)
T 3do5_A 3 IKIAIVGF-GTVGQGVAELLIRKREEIEKAIGEFKVT-AVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSAD 80 (327)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTHHHHHHHHCCEEEE-EEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSC
T ss_pred EEEEEEec-cHHHHHHHHHHHhhHHHHHhcCCCEEEE-EEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCC
Confidence 68999998 9999999998875 358888 77776541100 01245777 9999998778
Q ss_pred CcEEEEeeChHH----HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 117 ANASVIYVPPPF----AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 117 ~DvaVdfVpp~a----v~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+|++++++|+.. +.+.+..|+++|+++|.. ..+.-..+..+|.++|++--+
T Consensus 81 iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~-NKkpla~~~~eL~~~A~~~g~ 135 (327)
T 3do5_A 81 YDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS-NKGPLVAEFHGLMSLAERNGV 135 (327)
T ss_dssp CSEEEECCCCC----CHHHHHHHHHTTTCEEEEC-CSHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCcccchhHHHHHHHHHHCCCeEEec-CchhhHHHHHHHHHHHHhhCC
Confidence 999999999877 489999999999987765 444334578889998876443
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5.4e-07 Score=78.43 Aligned_cols=106 Identities=14% Similarity=-0.029 Sum_probs=80.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHh--------CCceEEeeccCCCCCeE--e-----------cCcc-ccc---cHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY--------GTKMVVGGVTPKKGGTE--H-----------LGLP-VFN---SVAEAK 112 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~--------g~~IV~AgVdp~~~G~~--i-----------~GvP-Vy~---Sv~ea~ 112 (182)
..||.|+|+ |.+|+.+.+.+.+. +++|+ +-.|+...--. + .+++ +|+ +.++++
T Consensus 6 ~irvgIiG~-G~VG~~~~~~l~~~~~~~~~g~~~~vv-aV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll 83 (331)
T 3c8m_A 6 TINLSIFGL-GNVGLNLLRIIRSFNEENRLGLKFNVV-FVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL 83 (331)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHHHHHHCSSSEEEEEE-EEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH
T ss_pred EEeEEEEec-CHHHHHHHHHHHhChHHHhcCCcEEEE-EEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh
Confidence 478999999 99999999887753 37888 76666541100 1 1343 666 899988
Q ss_pred hccCCcEEEEeeChH----HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 113 AETKANASVIYVPPP----FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~----av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
..++|++++.+|+. .+.+.+.+|+++|+++|.+ .++.-.++..+|.++|++--
T Consensus 84 -~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvta-nK~pla~~~~eL~~~A~~~g 140 (331)
T 3c8m_A 84 -ARDFDIVVDATPASADGKKELAFYKETFENGKDVVTA-NKSGLANFWPEIMEYARSNN 140 (331)
T ss_dssp -HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEEC-CCHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEec-CchhhHHHHHHHHHHHHHcC
Confidence 66899999999995 8999999999999988765 44444578889999886543
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-07 Score=84.85 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=85.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHH----------hCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEee
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE----------YGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~----------~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
+..||.|+|+ |.+|+.+++.+.+ .+++|+ +-.++...... ..+.++|++.+|+++..++|++++.+
T Consensus 9 k~irIgIIG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~lv-aV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~t 86 (444)
T 3mtj_A 9 KPIHVGLLGL-GTVGGGTLTVLRRNAEEITRRAGREIRVV-RAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELI 86 (444)
T ss_dssp SCEEEEEECC-HHHHHHHHHHHHHTHHHHHHHHSSCEEEE-EEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECC
T ss_pred CcccEEEECC-CHHHHHHHHHHHHhHHHHHHhcCCCEEEE-EEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcC
Confidence 4579999997 9999998876652 347788 77776542111 23678999999999877899999999
Q ss_pred Ch-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 125 PP-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 125 pp-~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
|+ ..+.+.+.+|+++|++++.. -.....++..+|.++|++--+
T Consensus 87 p~~~~h~~~~~~AL~aGKhVvte-nkal~a~~~~eL~~~A~~~gv 130 (444)
T 3mtj_A 87 GGLEPARELVMQAIANGKHVVTA-NKHLVAKYGNEIFAAAQAKGV 130 (444)
T ss_dssp CSSTTHHHHHHHHHHTTCEEEEC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHcCCEEEEC-CcccCHHHHHHHHHHHHHhCC
Confidence 96 89999999999999987765 456667788899999976433
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.24 E-value=8.8e-07 Score=77.41 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=80.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-------CCceEEeeccCCCCCe--E-----------ecC-cc--ccccHHHHHhc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-------GTKMVVGGVTPKKGGT--E-----------HLG-LP--VFNSVAEAKAE 114 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-------g~~IV~AgVdp~~~G~--~-----------i~G-vP--Vy~Sv~ea~~~ 114 (182)
..||.|+|+ |.+|+.+++.+.+. +++|+ |-.|.....- + ..+ ++ .| +..|.++.
T Consensus 4 ~irVgIiG~-G~VG~~~~~~L~~~~~~~~g~~l~lv-aVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~ 80 (325)
T 3ing_A 4 EIRIILMGT-GNVGLNVLRIIDASNRRRSAFSIKVV-GVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG 80 (325)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHHHHHHC--CEEEEE-EEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT
T ss_pred eEEEEEEcC-cHHHHHHHHHHHhchhhccCCCEEEE-EEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC
Confidence 478999997 99999999988763 47888 7666653210 0 002 33 34 66777776
Q ss_pred cCCcEEEEeeCh----HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 115 TKANASVIYVPP----PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 115 ~~~DvaVdfVpp----~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.++|++++++|+ ..+.+.+.+|+++|+++|.+ ..+.-.++..+|.++|++--+
T Consensus 81 ~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta-NK~~la~~~~eL~~lA~~~g~ 137 (325)
T 3ing_A 81 EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA-NKSGLANKWHDIMDSANQNSK 137 (325)
T ss_dssp SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC-CCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEc-CchhHHHHHHHHHHHHHHcCC
Confidence 789999999986 44579999999999998886 566556889999999976544
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-06 Score=71.70 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=77.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC---ceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT---KMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~---~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+||.|+|+ |+||+.+++.+.+.|. +|+ ..|+...--+ ..|+.++.+..|+.+ ++|++++.|||....
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~--v~dr~~~~~~~l~~~~gi~~~~~~~~~~~--~aDvVilav~p~~~~ 77 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDPNRIC--VTNRSLDKLDFFKEKCGVHTTQDNRQGAL--NADVVVLAVKPHQIK 77 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEE--EECSSSHHHHHHHHTTCCEEESCHHHHHS--SCSEEEECSCGGGHH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEE--EEeCCHHHHHHHHHHcCCEEeCChHHHHh--cCCeEEEEeCHHHHH
Confidence 478999999 9999999999998886 777 5665542111 137888999999888 799999999999999
Q ss_pred HHHHHHHHc---CCCEEEEeCCCCCHHHHHHHH
Q 030169 131 AAIMEAMEA---ELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 131 ~a~~eAie~---GIk~VV~iTeG~~~eD~~~l~ 160 (182)
+++++.... +-..|+.++.|++.+++.+..
T Consensus 78 ~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l 110 (280)
T 3tri_A 78 MVCEELKDILSETKILVISLAVGVTTPLIEKWL 110 (280)
T ss_dssp HHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHhhccCCCeEEEEecCCCCHHHHHHHc
Confidence 998887643 333777779999988776654
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.4e-06 Score=68.69 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=74.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
.+||.|+|+ |.||+.+++.+.+.| .+|+ .+|+...- .|+.++.+.+++.+ ++|++++.+|+..+.+++
T Consensus 4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~--~~~~~~~~---~g~~~~~~~~~~~~--~~D~vi~~v~~~~~~~v~ 75 (262)
T 2rcy_A 4 NIKLGFMGL-GQMGSALAHGIANANIIKKENLF--YYGPSKKN---TTLNYMSSNEELAR--HCDIIVCAVKPDIAGSVL 75 (262)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEE--EECSSCCS---SSSEECSCHHHHHH--HCSEEEECSCTTTHHHHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEE--EEeCCccc---CceEEeCCHHHHHh--cCCEEEEEeCHHHHHHHH
Confidence 368999999 999999999998888 4666 66665422 57888889988887 799999999999998888
Q ss_pred HHHHHc-CCCEEEEeCCCCCHHHHHHH
Q 030169 134 MEAMEA-ELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 134 ~eAie~-GIk~VV~iTeG~~~eD~~~l 159 (182)
++.... .-..|+..+.|++.+.+.++
T Consensus 76 ~~l~~~l~~~~vv~~~~gi~~~~l~~~ 102 (262)
T 2rcy_A 76 NNIKPYLSSKLLISICGGLNIGKLEEM 102 (262)
T ss_dssp HHSGGGCTTCEEEECCSSCCHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCCHHHHHHH
Confidence 875543 23457777999999765554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=60.77 Aligned_cols=99 Identities=14% Similarity=0.035 Sum_probs=69.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCC--------CeEe--cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKG--------GTEH--LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~--------G~~i--~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
.++|+|.|+ |.+|+.+++.+.+.| .+++ .+++... +-.. .++.-..+++++++ ++|+++..+|+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~--~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~~~~ 79 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVT--VADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG--GFDAVISAAPF 79 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEE--EEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTT--TCSEEEECSCG
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEE--EEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHc--CCCEEEECCCc
Confidence 468999999 999999999999989 7877 4444321 1011 11222233555555 79999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.....+++.|++.|++.+.. ++.+. ...++.++++
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~-~~~~~--~~~~~~~~~~ 114 (118)
T 3ic5_A 80 FLTPIIAKAAKAAGAHYFDL-TEDVA--ATNAVRALVE 114 (118)
T ss_dssp GGHHHHHHHHHHTTCEEECC-CSCHH--HHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCEEEe-cCcHH--HHHHHHHHHH
Confidence 99999999999999998765 54333 4455555544
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.14 E-value=4e-06 Score=69.85 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=76.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeC-hHHHHHHH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAI- 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVp-p~av~~a~- 133 (182)
+||.|+|+ |.||+.+++.+.+.|.+|+ +.|+...--+ ..|+.++++++|+.+ ++|++++.+| +..+.+++
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~--~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDvvi~~vp~~~~~~~v~~ 76 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGCSVT--IWNRSPEKAEELAALGAERAATPCEVVE--SCPVTFAMLADPAAAEEVCF 76 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSGGGGHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEEcCCHHHHHHHHc
Confidence 68999998 9999999999999998888 5565542111 137889999999988 7899999999 66777777
Q ss_pred --HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 134 --MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 134 --~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
++..+. .- +.|+. +++.+..+..++.+..++.
T Consensus 77 ~~~~l~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~ 112 (287)
T 3pef_A 77 GKHGVLEGIGEGRGYVD-MSTVDPATSQRIGVAVVAK 112 (287)
T ss_dssp STTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHT
T ss_pred CcchHhhcCCCCCEEEe-CCCCCHHHHHHHHHHHHHh
Confidence 444433 12 34555 7888888888887776543
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-06 Score=70.84 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=71.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+||.|+|+ |+||+.+++.+.+.|.++| ..+++...-- +..|+.++.+++|+.+ ++|++++.+|+....++++
T Consensus 11 m~i~iiG~-G~mG~~~a~~l~~~g~~~v-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~Dvvi~av~~~~~~~v~~ 86 (266)
T 3d1l_A 11 TPIVLIGA-GNLATNLAKALYRKGFRIV-QVYSRTEESARELAQKVEAEYTTDLAEVNP--YAKLYIVSLKDSAFAELLQ 86 (266)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHTCCEE-EEECSSHHHHHHHHHHTTCEEESCGGGSCS--CCSEEEECCCHHHHHHHHH
T ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCeEE-EEEeCCHHHHHHHHHHcCCceeCCHHHHhc--CCCEEEEecCHHHHHHHHH
Confidence 68999998 9999999999998898855 5676653110 1127888899988877 7999999999999888887
Q ss_pred HHHHc--CCCEEEEeCCCCCHHHH
Q 030169 135 EAMEA--ELDLVVCITEGIPQHDM 156 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~~eD~ 156 (182)
+..+. .=+.|+..++|++.+.+
T Consensus 87 ~l~~~~~~~~ivv~~s~~~~~~~l 110 (266)
T 3d1l_A 87 GIVEGKREEALMVHTAGSIPMNVW 110 (266)
T ss_dssp HHHTTCCTTCEEEECCTTSCGGGS
T ss_pred HHHhhcCCCcEEEECCCCCchHHH
Confidence 66542 12356677899997663
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=71.23 Aligned_cols=105 Identities=20% Similarity=0.139 Sum_probs=83.0
Q ss_pred ecCCceEEEEccCCCCchhhhHH---HHHh--CCceEEeeccCCCCCeEec--------CccccccHHHHHhccCCcEEE
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQ---AIEY--GTKMVVGGVTPKKGGTEHL--------GLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~---~~~~--g~~IV~AgVdp~~~G~~i~--------GvPVy~Sv~ea~~~~~~DvaV 121 (182)
+..++|++|.|. |.+|+...|. +..| +.++| |-+ +.+.|++.. |+||++|++++++. ++|+.+
T Consensus 19 ~~~~~~~vi~~~-g~~g~~~aKta~gllr~~~~~~iV-gvi-~~~~Gkd~ge~~~g~~~gipv~~d~~~al~~-~~d~lv 94 (350)
T 2g0t_A 19 YQPGTPAAIVAW-GQLGTAHAKTTYGLLRHSRLFKPV-CVV-AEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLI 94 (350)
T ss_dssp SCTTEEEEEECT-TTTTSGGGHHHHHHHHHCSSEEEE-EEE-SSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCEEE
T ss_pred hCcCCCEEEEeC-CCCChHHHHHHHHHHhhCCCCeEE-EEe-ecCCCCcHHHhhCCCCCCceeeCCHHHHHhc-CCCEEE
Confidence 456789999988 9999999884 4677 48999 888 888887643 69999999999964 599999
Q ss_pred Eee------ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 122 IYV------PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 122 dfV------pp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.+ =+....+.+.+|+++|+.+|-. -+....|..+|.++|++
T Consensus 95 ig~a~~gg~l~~~~~~~I~~Al~~G~nVvsg--lh~~l~~~pel~~~A~~ 142 (350)
T 2g0t_A 95 IGVSNPGGYLEEQIATLVKKALSLGMDVISG--LHFKISQQTEFLKIAHE 142 (350)
T ss_dssp ECCCSCCHHHHHHHHHHHHHHHHTTCEEEEC--CCC--CCHHHHHHHHHH
T ss_pred EEecCCCCCCCHHHHHHHHHHHHcCCcEEeC--ChhhhhCCHHHHHHHHH
Confidence 986 2346778999999999988765 34468888889898875
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=65.90 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=73.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe-----cCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH-----LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i-----~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
+||.|+|+ |.||+.+++.+.+.|.+|+ +.++.+..+.. .|+. .+.+|+.+ ++|++++.+|+....+.+
T Consensus 1 M~I~iIG~-G~mG~~la~~l~~~g~~V~--~~~~~~~~~~~~~~~~~g~~--~~~~~~~~--~aDvvi~~v~~~~~~~~~ 73 (264)
T 1i36_A 1 LRVGFIGF-GEVAQTLASRLRSRGVEVV--TSLEGRSPSTIERARTVGVT--ETSEEDVY--SCPVVISAVTPGVALGAA 73 (264)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEE--ECCTTCCHHHHHHHHHHTCE--ECCHHHHH--TSSEEEECSCGGGHHHHH
T ss_pred CeEEEEec-hHHHHHHHHHHHHCCCeEE--EeCCccCHHHHHHHHHCCCc--CCHHHHHh--cCCEEEEECCCHHHHHHH
Confidence 47999998 9999999999999899988 47774221111 2555 77888877 799999999998777767
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 MEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.+..+.--+ +++-+.+++..+..+|.+..++
T Consensus 74 ~~~~~~~~~-~vi~~s~~~~~~~~~l~~~~~~ 104 (264)
T 1i36_A 74 RRAGRHVRG-IYVDINNISPETVRMASSLIEK 104 (264)
T ss_dssp HHHHTTCCS-EEEECSCCCHHHHHHHHHHCSS
T ss_pred HHHHHhcCc-EEEEccCCCHHHHHHHHHHHhh
Confidence 665554333 4444678888888888877654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-06 Score=70.03 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=72.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+||.|+|+ |.||+.+++.+.+.|.++. .+|+...-- . ..|+.++.+.+|+.+ ++|++++.+|+....+++.
T Consensus 4 m~i~iiG~-G~mG~~~a~~l~~~g~~v~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~Vi~~v~~~~~~~v~~ 78 (259)
T 2ahr_A 4 MKIGIIGV-GKMASAIIKGLKQTPHELI--ISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGIKPQLFETVLK 78 (259)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEE--EECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECSCGGGHHHHHT
T ss_pred cEEEEECC-CHHHHHHHHHHHhCCCeEE--EECCCHHHHHHHHHHcCCEeeCCHHHHHh--cCCEEEEEeCcHhHHHHHH
Confidence 68999997 9999999999988886555 666643110 1 127889999999888 7999999999998888776
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHH
Q 030169 135 EAMEAELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+. ..|. .++-.+.|++.+++.++..
T Consensus 79 ~l-~~~~-~vv~~~~~~~~~~l~~~~~ 103 (259)
T 2ahr_A 79 PL-HFKQ-PIISMAAGISLQRLATFVG 103 (259)
T ss_dssp TS-CCCS-CEEECCTTCCHHHHHHHHC
T ss_pred Hh-ccCC-EEEEeCCCCCHHHHHHhcC
Confidence 54 3453 5665568999887666543
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=7.5e-06 Score=67.77 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=72.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~~ 134 (182)
+||.|+|+ |.||+.+++.+.+.|.+|+ .+|+...-- . ..|+.++.+.+|+.+ ++|++++.+|.. .+.+++.
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~~V~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~Dvvi~~vp~~~~~~~v~~ 75 (296)
T 2gf2_A 1 MPVGFIGL-GNMGNPMAKNLMKHGYPLI--IYDVFPDACKEFQDAGEQVVSSPADVAE--KADRIITMLPTSINAIEAYS 75 (296)
T ss_dssp CCEEEECC-STTHHHHHHHHHHTTCCEE--EECSSTHHHHHHHTTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEec-cHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHh
Confidence 47999998 9999999999998898877 666543110 0 137888899999887 689999999754 5556554
Q ss_pred HH------HHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 EA------MEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 eA------ie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+. +..| +.|+. +.|++.++..++.+..++
T Consensus 76 ~~~~~~~~l~~~-~~vv~-~s~~~~~~~~~~~~~~~~ 110 (296)
T 2gf2_A 76 GANGILKKVKKG-SLLID-SSTIDPAVSKELAKEVEK 110 (296)
T ss_dssp STTSGGGTCCTT-CEEEE-CSCCCHHHHHHHHHHHHH
T ss_pred CchhHHhcCCCC-CEEEE-CCCCCHHHHHHHHHHHHH
Confidence 31 1223 24555 899999998888766543
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.6e-05 Score=65.69 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=76.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeC-hHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVp-p~av~~a~ 133 (182)
.+||.|+|+ |.||+.+++.+.+.|.+|+ ++|+...--+ ..|+.+.++++|+.+ +|++++.+| +..+.+++
T Consensus 15 ~~~I~vIG~-G~mG~~~A~~l~~~G~~V~--~~dr~~~~~~~~~~~g~~~~~~~~~~~~---aDvvi~~vp~~~~~~~v~ 88 (296)
T 3qha_A 15 QLKLGYIGL-GNMGAPMATRMTEWPGGVT--VYDIRIEAMTPLAEAGATLADSVADVAA---ADLIHITVLDDAQVREVV 88 (296)
T ss_dssp CCCEEEECC-STTHHHHHHHHTTSTTCEE--EECSSTTTSHHHHHTTCEECSSHHHHTT---SSEEEECCSSHHHHHHHH
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHCCCEEcCCHHHHHh---CCEEEEECCChHHHHHHH
Confidence 468999998 9999999999999998888 5555442211 137888999999876 899999999 45677777
Q ss_pred HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 134 MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 ~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
++..+. .- ..||. ++..+..+..++.+..++-.+.
T Consensus 89 ~~l~~~l~~g~ivv~-~st~~~~~~~~~~~~~~~~g~~ 125 (296)
T 3qha_A 89 GELAGHAKPGTVIAI-HSTISDTTAVELARDLKARDIH 125 (296)
T ss_dssp HHHHTTCCTTCEEEE-CSCCCHHHHHHHHHHHGGGTCE
T ss_pred HHHHHhcCCCCEEEE-eCCCCHHHHHHHHHHHHHcCCE
Confidence 665543 12 34444 6777888888888776654443
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=68.83 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=75.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeCh-HHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp-~av~~a~ 133 (182)
.+||.|+|+ |.||+.+++.+.+.|.+|+ ++|+...--+ ..|+.++.+++|+.+ ++|++++.+|. ..+.+++
T Consensus 31 ~~~I~iIG~-G~mG~~~a~~l~~~G~~V~--~~dr~~~~~~~l~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~~v~ 105 (320)
T 4dll_A 31 ARKITFLGT-GSMGLPMARRLCEAGYALQ--VWNRTPARAASLAALGATIHEQARAAAR--DADIVVSMLENGAVVQDVL 105 (320)
T ss_dssp CSEEEEECC-TTTHHHHHHHHHHTTCEEE--EECSCHHHHHHHHTTTCEEESSHHHHHT--TCSEEEECCSSHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCeEE--EEcCCHHHHHHHHHCCCEeeCCHHHHHh--cCCEEEEECCCHHHHHHHH
Confidence 468999999 9999999999999999888 6666532111 137888999999998 79999999995 4566665
Q ss_pred H--HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 134 M--EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 134 ~--eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
. +.++. .- ..||. ++..+..+..++.+..++-.+
T Consensus 106 ~~~~~~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~g~ 143 (320)
T 4dll_A 106 FAQGVAAAMKPGSLFLD-MASITPREARDHAARLGALGI 143 (320)
T ss_dssp TTTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTC
T ss_pred cchhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHcCC
Confidence 4 34433 22 34454 666777888887776654433
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=98.00 E-value=1e-05 Score=67.40 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=75.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI- 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~- 133 (182)
+||.|+|+ |.||+.+++.+.+.|.+|+ +.|+...--+ ..|+.+.++++|+.+ ++|++++.+|.. .+.+++
T Consensus 2 ~~I~iiG~-G~mG~~~a~~l~~~G~~V~--~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~advvi~~v~~~~~~~~v~~ 76 (287)
T 3pdu_A 2 TTYGFLGL-GIMGGPMAANLVRAGFDVT--VWNRNPAKCAPLVALGARQASSPAEVCA--ACDITIAMLADPAAAREVCF 76 (287)
T ss_dssp CCEEEECC-STTHHHHHHHHHHHTCCEE--EECSSGGGGHHHHHHTCEECSCHHHHHH--HCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHCCCeecCCHHHHHH--cCCEEEEEcCCHHHHHHHHc
Confidence 47999997 9999999999999998888 5565542111 137888999999988 789999999986 566665
Q ss_pred --HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 134 --MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 --~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
++..+. .- ..|+. ++..+..+..++.+..++..+.
T Consensus 77 ~~~~l~~~l~~g~~vv~-~st~~~~~~~~~~~~~~~~g~~ 115 (287)
T 3pdu_A 77 GANGVLEGIGGGRGYID-MSTVDDETSTAIGAAVTARGGR 115 (287)
T ss_dssp STTCGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCE
T ss_pred CchhhhhcccCCCEEEE-CCCCCHHHHHHHHHHHHHcCCE
Confidence 333332 11 34555 6667888888887776554433
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.8e-06 Score=74.50 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=76.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---------CCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---------GTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPP- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---------g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~- 127 (182)
.||.|+|+ |.+|+.+++.+.+. +++++ +-.+...... .+..-.+|+++++++ ++|++++.+|..
T Consensus 4 irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lv-aV~d~~~~~~~~~~~~~~~~d~~~ll---~iDvVve~t~~~~ 78 (332)
T 2ejw_A 4 LKIALLGG-GTVGSAFYNLVLERAEELSAFGVVPRFL-GVLVRDPRKPRAIPQELLRAEPFDLL---EADLVVEAMGGVE 78 (332)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTGGGGGGGTEEEEEE-EEECSCTTSCCSSCGGGEESSCCCCT---TCSEEEECCCCSH
T ss_pred eEEEEEcC-CHHHHHHHHHHHhChhhHhhcCCCEEEE-EEEECCHHHhhccCcccccCCHHHHh---CCCEEEECCCCcH
Confidence 68999999 99999999987753 46787 6666543211 122234688888877 699999999976
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+.+.++.|+++|+++|.. .+..-.++..+|.++|++-
T Consensus 79 ~a~~~~~~AL~aGKhVVta-Nkkpla~~~~eL~~~A~~~ 116 (332)
T 2ejw_A 79 APLRLVLPALEAGIPLITA-NKALLAEAWESLRPFAEEG 116 (332)
T ss_dssp HHHHHHHHHHHTTCCEEEC-CHHHHHHSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCeEEEC-CchhHHHHHHHHHHHHHhC
Confidence 6789999999999998774 3443337888999998764
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.6e-05 Score=66.48 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=73.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCC---eE--ecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGG---TE--HLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G---~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.+||.|+|+ |.||..++..+.+.| .+|+ .+++.... +. ..|+.+..+..|+.+ ++|++++.||+..
T Consensus 22 ~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~--v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~--~aDvVilav~~~~ 96 (322)
T 2izz_A 22 SMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIM--ASSPDMDLATVSALRKMGVKLTPHNKETVQ--HSDVLFLAVKPHI 96 (322)
T ss_dssp CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEE--EECSCTTSHHHHHHHHHTCEEESCHHHHHH--HCSEEEECSCGGG
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCcceEE--EECCCccHHHHHHHHHcCCEEeCChHHHhc--cCCEEEEEeCHHH
Confidence 468999998 999999999999888 5777 66665421 01 137888888888887 7999999999999
Q ss_pred HHHHHHHHHHc-C-CCEEEEeCCCCCHHHHHHH
Q 030169 129 AAAAIMEAMEA-E-LDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 129 v~~a~~eAie~-G-Ik~VV~iTeG~~~eD~~~l 159 (182)
+.+++++.... . =+.||.++.|++.+++.++
T Consensus 97 ~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~ 129 (322)
T 2izz_A 97 IPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 129 (322)
T ss_dssp HHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHH
Confidence 99988776443 1 2356766789998765544
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.8e-05 Score=67.98 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=73.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeE---ecCc--cccccHHH-HHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTE---HLGL--PVFNSVAE-AKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~---i~Gv--PVy~Sv~e-a~~~~~~DvaVdfVpp~av~ 130 (182)
+||.|+|+ |.||..+++.+.+.|. +|+ ++|+....-+ ..|+ .++.++++ +.+ ++|++++.+|+....
T Consensus 34 ~kI~IIG~-G~mG~slA~~l~~~G~~~~V~--~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~--~aDvVilavp~~~~~ 108 (314)
T 3ggo_A 34 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIY--GYDINPESISKAVDLGIIDEGTTSIAKVEDF--SPDFVMLSSPVRTFR 108 (314)
T ss_dssp SEEEEESC-SHHHHHHHHHHHHTTCCSEEE--EECSCHHHHHHHHHTTSCSEEESCTTGGGGG--CCSEEEECSCGGGHH
T ss_pred CEEEEEee-CHHHHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHCCCcchhcCCHHHHhhc--cCCEEEEeCCHHHHH
Confidence 68999997 9999999999999997 777 7777542101 1244 45678888 777 899999999999999
Q ss_pred HHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 131 AAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 131 ~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
+++++.... .-..+|+-.+++.......+.+..
T Consensus 109 ~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l 142 (314)
T 3ggo_A 109 EIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL 142 (314)
T ss_dssp HHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred HHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhc
Confidence 988877654 334455545667655566666554
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.5e-05 Score=67.79 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=77.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC-CCe----EecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK-GGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~-~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
..+||.|+|+ |.||..+++.+.+.|. +|+ +.|+.. ... ...|+.++++++|+.+ ++|++++.+|+....
T Consensus 23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~~~V~--~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~ 97 (312)
T 3qsg_A 23 NAMKLGFIGF-GEAASAIASGLRQAGAIDMA--AYDAASAESWRPRAEELGVSCKASVAEVAG--ECDVIFSLVTAQAAL 97 (312)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHHSCCEEE--EECSSCHHHHHHHHHHTTCEECSCHHHHHH--HCSEEEECSCTTTHH
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCCeEE--EEcCCCCHHHHHHHHHCCCEEeCCHHHHHh--cCCEEEEecCchhHH
Confidence 3578999998 9999999999999998 777 677641 010 1237888999999988 799999999999998
Q ss_pred HHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 131 AAIMEAMEAE-LDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 131 ~a~~eAie~G-Ik~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+++++..+.- -..+|+-++.++.....++.+..++
T Consensus 98 ~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~ 133 (312)
T 3qsg_A 98 EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISR 133 (312)
T ss_dssp HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 8887666542 2234444677888888777766543
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.6e-05 Score=67.31 Aligned_cols=103 Identities=15% Similarity=0.079 Sum_probs=74.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~ 133 (182)
.+||.|+|+ |.||..+++.+.+.|.+|+ +.|+...--+ ..|+.++.+++|+.+ ++|++++.+|.. .+.+++
T Consensus 21 m~~I~iIG~-G~mG~~~A~~l~~~G~~V~--~~dr~~~~~~~l~~~g~~~~~~~~~~~~--~aDvvi~~vp~~~~~~~v~ 95 (310)
T 3doj_A 21 MMEVGFLGL-GIMGKAMSMNLLKNGFKVT--VWNRTLSKCDELVEHGASVCESPAEVIK--KCKYTIAMLSDPCAALSVV 95 (310)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSGGGGHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHCCCeEcCCHHHHHH--hCCEEEEEcCCHHHHHHHH
Confidence 368999998 9999999999999998888 5665542111 137888999999988 799999999864 556555
Q ss_pred ---HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 134 ---MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 134 ---~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
++.++. .- ..||. ++..+.....++.+..++.
T Consensus 96 ~~~~~l~~~l~~g~~vv~-~st~~~~~~~~~~~~~~~~ 132 (310)
T 3doj_A 96 FDKGGVLEQICEGKGYID-MSTVDAETSLKINEAITGK 132 (310)
T ss_dssp HSTTCGGGGCCTTCEEEE-CSCCCHHHHHHHHHHHHHT
T ss_pred hCchhhhhccCCCCEEEE-CCCCCHHHHHHHHHHHHHc
Confidence 333332 12 34454 7778888888887766543
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.1e-05 Score=68.39 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=74.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~ 133 (182)
.+||.|+|+ |.||+.+++.+.+.|.+|+ +.|+...--+ ..|+..+.+++|+.+ ++|++++.+|... +.+++
T Consensus 9 ~~~IgiIG~-G~mG~~~A~~l~~~G~~V~--~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~~v~ 83 (306)
T 3l6d_A 9 EFDVSVIGL-GAMGTIMAQVLLKQGKRVA--IWNRSPGKAAALVAAGAHLCESVKAALS--ASPATIFVLLDNHATHEVL 83 (306)
T ss_dssp SCSEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSHHHHHHHHHHTCEECSSHHHHHH--HSSEEEECCSSHHHHHHHH
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEEeCCHHHHHHHh
Confidence 468999998 9999999999999999888 5666542111 127788899999988 7999999999765 56655
Q ss_pred H--HHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 134 M--EAMEA-ELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 134 ~--eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
. ..... .=+.||. ++..+..+..++.+..++..+
T Consensus 84 ~~~~l~~~~~g~ivid-~st~~~~~~~~l~~~~~~~g~ 120 (306)
T 3l6d_A 84 GMPGVARALAHRTIVD-YTTNAQDEGLALQGLVNQAGG 120 (306)
T ss_dssp TSTTHHHHTTTCEEEE-CCCCCTTHHHHHHHHHHHTTC
T ss_pred cccchhhccCCCEEEE-CCCCCHHHHHHHHHHHHHcCC
Confidence 3 21111 2234555 666777778887776655433
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.4e-06 Score=66.94 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=72.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC----ceEEeeccCCCCCe-E---ecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVVGGVTPKKGGT-E---HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~----~IV~AgVdp~~~G~-~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+||.|+|+ |+||+.+++.+.+.|. +|+ ..|+...-- . ..|+.++.+.+|+.+ ++|++++.+||..+.
T Consensus 3 ~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~--~~~r~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVilav~~~~~~ 77 (247)
T 3gt0_A 3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQII--CSDLNTANLKNASEKYGLTTTTDNNEVAK--NADILILSIKPDLYA 77 (247)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEE--EECSCHHHHHHHHHHHCCEECSCHHHHHH--HCSEEEECSCTTTHH
T ss_pred CeEEEECc-cHHHHHHHHHHHhCCCCCCCeEE--EEeCCHHHHHHHHHHhCCEEeCChHHHHH--hCCEEEEEeCHHHHH
Confidence 58999998 9999999999999886 777 666653111 1 137889999999888 799999999999999
Q ss_pred HHHHHHHHc-C-CCEEEEeCCCCCHHHHHHHH
Q 030169 131 AAIMEAMEA-E-LDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 131 ~a~~eAie~-G-Ik~VV~iTeG~~~eD~~~l~ 160 (182)
+++++.... . =+.||.++.|++.+.+.+..
T Consensus 78 ~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~ 109 (247)
T 3gt0_A 78 SIINEIKEIIKNDAIIVTIAAGKSIESTENAF 109 (247)
T ss_dssp HHC---CCSSCTTCEEEECSCCSCHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEEecCCCCHHHHHHHh
Confidence 988765432 1 12566578999987665543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.87 E-value=2e-05 Score=69.22 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=75.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhcc-CCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAET-KANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~av~~a 132 (182)
+.+||.|+|. |.||..+++.+.+.|.+|+ ++|+...--+ ..|+.++.+++|+.+.. .+|++++.+|+..+.++
T Consensus 21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~~V~--v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~v 97 (358)
T 4e21_A 21 QSMQIGMIGL-GRMGADMVRRLRKGGHECV--VYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSM 97 (358)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHH
T ss_pred cCCEEEEECc-hHHHHHHHHHHHhCCCEEE--EEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHH
Confidence 3478999997 9999999999999998888 6666531101 13788899999998732 45999999999987787
Q ss_pred HHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 133 IMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 133 ~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+++.... .-..+|+-++..+..+..++.+..+.
T Consensus 98 l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 131 (358)
T 4e21_A 98 LQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRA 131 (358)
T ss_dssp HHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHT
T ss_pred HHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHH
Confidence 7665543 12233333566666666666665543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-05 Score=69.36 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=72.1
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-----EecCccc--cccHHHHHhccCCcEEEEeeChHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-----EHLGLPV--FNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-----~i~GvPV--y~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.+.+||+|.|+ |.+|+.+++.+.+. .+|.+++++..+..+ ....+-+ .+++.++++ ++|++|..+||..
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~--~~DvVi~~~p~~~ 89 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKDE-FDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK--EFELVIGALPGFL 89 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTTT-SEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHT--TCSEEEECCCGGG
T ss_pred CCccEEEEECC-CHHHHHHHHHHhcC-CCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHh--CCCEEEEecCCcc
Confidence 45689999999 99999999988653 455545665532111 0111222 234666666 7899999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
...+++.|+++|++.|= +++. .+++.+|.+.|++--+
T Consensus 90 ~~~v~~~~~~~g~~yvD--~s~~-~~~~~~l~~~a~~~g~ 126 (365)
T 3abi_A 90 GFKSIKAAIKSKVDMVD--VSFM-PENPLELRDEAEKAQV 126 (365)
T ss_dssp HHHHHHHHHHHTCEEEE--CCCC-SSCGGGGHHHHHHTTC
T ss_pred cchHHHHHHhcCcceEe--eecc-chhhhhhhhhhccCCc
Confidence 99999999999998654 2333 3456677777765443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.86 E-value=2.4e-05 Score=64.31 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=71.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCcc--ccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLP--VFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvP--Vy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
+||.|+|+ |.||+.+++.+.+.|.+|+ ++++...-.+ ..|++ ++.+++++ + ++|++++.+|+....+++
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~D~vi~av~~~~~~~~~ 74 (279)
T 2f1k_A 1 MKIGVVGL-GLIGASLAGDLRRRGHYLI--GVSRQQSTCEKAVERQLVDEAGQDLSLL-Q--TAKIIFLCTPIQLILPTL 74 (279)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTTSCSEEESCGGGG-T--TCSEEEECSCHHHHHHHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHhCCCCccccCCHHHh-C--CCCEEEEECCHHHHHHHH
Confidence 47999997 9999999999999898877 6666531100 12443 57788887 6 899999999999988888
Q ss_pred HHHHHc-CCC-EEEEeCCCCCHHHHHHHHHHh
Q 030169 134 MEAMEA-ELD-LVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 134 ~eAie~-GIk-~VV~iTeG~~~eD~~~l~~~a 163 (182)
++.... .-. .|+. +.+++..+...+.+..
T Consensus 75 ~~l~~~~~~~~~vv~-~~~~~~~~~~~~~~~~ 105 (279)
T 2f1k_A 75 EKLIPHLSPTAIVTD-VASVKTAIAEPASQLW 105 (279)
T ss_dssp HHHGGGSCTTCEEEE-CCSCCHHHHHHHHHHS
T ss_pred HHHHhhCCCCCEEEE-CCCCcHHHHHHHHHHh
Confidence 776543 222 4444 6778887777666543
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.4e-05 Score=69.46 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=83.3
Q ss_pred ecCCceEEEEccCCCCchhhhHHH---HHh-CCceEEeeccCCCCCeEec-------CccccccHHHHHhccCCcEEEEe
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQA---IEY-GTKMVVGGVTPKKGGTEHL-------GLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~---~~~-g~~IV~AgVdp~~~G~~i~-------GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
+..+++++|.+. |.+|+...|.. ..| +.++| |-+|..+.|++.. |+|++.|++|+++ .++|+.++-
T Consensus 4 ~~~~~~~vi~~~-g~~~~~~aKta~gl~r~~~~~iV-gvid~~~~G~d~ge~~g~~~gipi~~~l~~al~-~~~d~lvig 80 (349)
T 2obn_A 4 LPLNQRVAILLH-EGTTGTIGKTGLALLRYSEAPIV-AVIDRNCAGQSLREITGIYRYVPIVKSVEAALE-YKPQVLVIG 80 (349)
T ss_dssp ---CCCEEEECT-TTSSSSSCHHHHHHHHHCCSCEE-EEECGGGTTSCHHHHHCCCSCCCEESSHHHHGG-GCCSEEEEC
T ss_pred CCCCCcEEEEeC-CCCCcHHHHHhHHhhhcCCCcEE-EEEeCCCCCCcHHHhcCCcCCCCccCCHHHHHh-CCCCEEEEE
Confidence 345678888876 88998888755 666 48999 9999999897653 6999999999995 479999999
Q ss_pred eC------hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 124 VP------PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 124 Vp------p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+. |+...+.+.+|+++|+.+|-+ -|.+..|..+|.++|++
T Consensus 81 ~a~~gG~l~~~~~~~i~~Al~~G~~Vvsg--lh~~l~~~pel~~~A~~ 126 (349)
T 2obn_A 81 IAPKGGGIPDDYWIELKTALQAGMSLVNG--LHTPLANIPDLNALLQP 126 (349)
T ss_dssp CCCCCC-SCGGGHHHHHHHHHTTCEEEEC--SSSCCTTCHHHHHHCCT
T ss_pred ecCCCCCCCHHHHHHHHHHHHcCCcEEeC--ccchhhCCHHHHHHHHc
Confidence 82 246678899999999988765 44566666779999886
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.4e-05 Score=62.39 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=67.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeecc-CCCCCeE-ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT-PKKGGTE-HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd-p~~~G~~-i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~e 135 (182)
+||.|+|+ |.||+.+++.+.+.|.+|+ .+| +.+...- ..|+.++.+++|+.+ ++|++++.+|... +.+++..
T Consensus 4 m~i~iiG~-G~~G~~~a~~l~~~g~~V~--~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~vp~~~~~~~v~~~ 78 (295)
T 1yb4_A 4 MKLGFIGL-GIMGSPMAINLARAGHQLH--VTTIGPVADELLSLGAVNVETARQVTE--FADIIFIMVPDTPQVEDVLFG 78 (295)
T ss_dssp CEEEECCC-STTHHHHHHHHHHTTCEEE--ECCSSCCCHHHHTTTCBCCSSHHHHHH--TCSEEEECCSSHHHHHHHHHS
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCEEE--EEcCHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEECCCHHHHHHHHhC
Confidence 68999998 9999999999998898887 444 3332110 127888999999888 7999999998777 4455441
Q ss_pred --HHHcCC---CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 136 --AMEAEL---DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 136 --Aie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.+...+ +.|+..++| +..+..+|.+..++
T Consensus 79 ~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~ 112 (295)
T 1yb4_A 79 EHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRVNE 112 (295)
T ss_dssp TTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHHHT
T ss_pred chhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHH
Confidence 222211 234554555 55566666666543
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=71.06 Aligned_cols=104 Identities=14% Similarity=0.034 Sum_probs=76.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHh--C--CceEEeeccCCCCCeEec----CccccccHHHHHhcc--------------
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY--G--TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAKAET-------------- 115 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~--g--~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~-------------- 115 (182)
..||.|+|+ |.+|+.+++.+.+. | ++++ +-.|... .... |++.|++.+++++..
T Consensus 4 ~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vv-aV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~ 79 (358)
T 1ebf_A 4 VVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLV-LLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHL 79 (358)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEE-EEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHH
T ss_pred eEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEE-EEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHh
Confidence 468999999 99999999988864 3 6788 6666543 2221 778888888876532
Q ss_pred ----CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC---CCHHHHHHHHHHhcccc
Q 030169 116 ----KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG---IPQHDMVINFTRVNILL 167 (182)
Q Consensus 116 ----~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG---~~~eD~~~l~~~ak~ip 167 (182)
.+|++++.+|.....+...+|+++|+++|.. -++ .+.++..+|. +|++--
T Consensus 80 ~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVta-Nkkpla~~~~~~~eL~-~A~~~g 136 (358)
T 1ebf_A 80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISIATP-NKKAFSSDLATWKALF-SNKPTN 136 (358)
T ss_dssp TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECC-CCGGGSSCHHHHHHHT-CCCTTC
T ss_pred hhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEec-CcccccCCHHHHHHHH-HHHHcC
Confidence 2379999999887777778999999987764 344 3457888888 887644
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.2e-06 Score=67.14 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=66.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
..+||.|+|+ |+||+.+++.+.+.|.+++ ...++...--+ ..|+.++.+..+..+ ++|++++.+|+....++
T Consensus 22 ~mmkI~IIG~-G~mG~~la~~l~~~g~~V~-~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~aDvVilavp~~~~~~v 97 (220)
T 4huj_A 22 SMTTYAIIGA-GAIGSALAERFTAAQIPAI-IANSRGPASLSSVTDRFGASVKAVELKDAL--QADVVILAVPYDSIADI 97 (220)
T ss_dssp GSCCEEEEEC-HHHHHHHHHHHHHTTCCEE-EECTTCGGGGHHHHHHHTTTEEECCHHHHT--TSSEEEEESCGGGHHHH
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCCHHHHHHHHHHhCCCcccChHHHHh--cCCEEEEeCChHHHHHH
Confidence 3478999996 9999999999999898888 43665432111 126666666666666 79999999999999988
Q ss_pred HHHHHHcCCCEEEEeCCCCC
Q 030169 133 IMEAMEAELDLVVCITEGIP 152 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~ 152 (182)
+.+.....=+.|+-++.|++
T Consensus 98 ~~~l~~~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 98 VTQVSDWGGQIVVDASNAID 117 (220)
T ss_dssp HTTCSCCTTCEEEECCCCBC
T ss_pred HHHhhccCCCEEEEcCCCCC
Confidence 87653222246777788884
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.2e-05 Score=68.07 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=66.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCC--CCe-------Ee-------------cCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKK--GGT-------EH-------------LGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~--~G~-------~i-------------~GvPVy~Sv~ea~~~~ 115 (182)
.||.|+|+ |++|+.+++.+.+. +++++ |-.++.. .+. +. .++++|.+.+++..
T Consensus 3 irVgIiG~-G~iG~~~~r~l~~~~~~elv-av~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~-- 78 (334)
T 2czc_A 3 VKVGVNGY-GTIGKRVAYAVTKQDDMELI-GITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE-- 78 (334)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEE-EEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--
T ss_pred cEEEEEeE-hHHHHHHHHHHhcCCCCEEE-EEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc--
Confidence 58999999 99999999988864 58888 6655431 110 11 13478889999887
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 116 KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 116 ~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
++|++++++|+....+.++.++++|++ |++ ....
T Consensus 79 ~vDvV~~aTp~~~h~~~a~~~l~aGk~-Vi~-sap~ 112 (334)
T 2czc_A 79 KVDIIVDATPGGIGAKNKPLYEKAGVK-AIF-QGGE 112 (334)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHTCE-EEE-CTTS
T ss_pred CCCEEEECCCccccHHHHHHHHHcCCc-eEe-eccc
Confidence 899999999999999999999999966 555 5433
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.79 E-value=3.7e-05 Score=63.65 Aligned_cols=100 Identities=10% Similarity=0.134 Sum_probs=68.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCccccccHHHHHhccCCcEEEEeeC-hHHHHHHH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAI- 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~GvPVy~Sv~ea~~~~~~DvaVdfVp-p~av~~a~- 133 (182)
+||.|+|+ |.||+.+++.+.+.|.+|+ .+|+...-. . ..|+.++.+++|+.+ ++|++++.+| +..+.+++
T Consensus 6 m~i~iiG~-G~~G~~~a~~l~~~g~~V~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~v~~~~~~~~~~~ 80 (299)
T 1vpd_A 6 MKVGFIGL-GIMGKPMSKNLLKAGYSLV--VSDRNPEAIADVIAAGAETASTAKAIAE--QCDVIITMLPNSPHVKEVAL 80 (299)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHH
T ss_pred ceEEEECc-hHHHHHHHHHHHhCCCEEE--EEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECCCHHHHHHHHh
Confidence 58999997 9999999999998898877 666543110 0 127888999999887 6999999999 55566665
Q ss_pred --HHH---HHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 --MEA---MEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 --~eA---ie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++. +..| ..|+.+++|.+ .+..+|.+..++
T Consensus 81 ~~~~l~~~l~~~-~~vv~~s~~~~-~~~~~l~~~~~~ 115 (299)
T 1vpd_A 81 GENGIIEGAKPG-TVLIDMSSIAP-LASREISDALKA 115 (299)
T ss_dssp STTCHHHHCCTT-CEEEECSCCCH-HHHHHHHHHHHT
T ss_pred CcchHhhcCCCC-CEEEECCCCCH-HHHHHHHHHHHH
Confidence 222 2234 34566556654 445555555443
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=3.2e-05 Score=67.61 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=65.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE----ecCcccccc-----------------HHHHHhccC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE----HLGLPVFNS-----------------VAEAKAETK 116 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~----i~GvPVy~S-----------------v~ea~~~~~ 116 (182)
.||.|+|+ |++|+.+++.+.+. +++++ +..+....... ..|+|+|.. ++++.+ +
T Consensus 2 ikVgIiGa-G~iG~~~~r~L~~~p~~elv-av~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~--~ 77 (340)
T 1b7g_O 2 VNVAVNGY-GTIGKRVADAIIKQPDMKLV-GVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK--T 77 (340)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEE-EEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH--H
T ss_pred eEEEEEec-CHHHHHHHHHHHcCCCCEEE-EEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc--C
Confidence 58999999 99999999988854 58998 76665421100 124666543 334434 6
Q ss_pred CcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 117 ANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 117 ~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG 150 (182)
+|++++++|+....+.+..++++|++.|.. +.-
T Consensus 78 vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~-sa~ 110 (340)
T 1b7g_O 78 SDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ-GGE 110 (340)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEEEC-TTS
T ss_pred CCEEEECCCCchhHHHHHHHHHcCCeEEEe-CCC
Confidence 999999999999999999999999998876 533
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.79 E-value=2.1e-05 Score=69.11 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=69.0
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCC---CCCeEec----------Cccccc--cHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPK---KGGTEHL----------GLPVFN--SVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~---~~G~~i~----------GvPVy~--Sv~ea~~~~~~DvaVd 122 (182)
+||.|+|++|..|+.+.+.+.+ .+++++ +..... ..|+.+. ++++.+ +.+++.+ ++|+++.
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~-~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~--~~Dvvf~ 81 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNIT-ALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP--GVDVVFL 81 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEE-EEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT--TCSEEEE
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEE-EEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc--CCCEEEE
Confidence 6899999999999999998886 568888 655544 5554332 233333 3444334 7999999
Q ss_pred eeChHHHHHHHHHHHHcCCCEEEEeCCCCCH
Q 030169 123 YVPPPFAAAAIMEAMEAELDLVVCITEGIPQ 153 (182)
Q Consensus 123 fVpp~av~~a~~eAie~GIk~VV~iTeG~~~ 153 (182)
.+|.....+.+..++++|.+.|-. +.-+..
T Consensus 82 a~p~~~s~~~~~~~~~~g~~vIDl-Sa~fR~ 111 (337)
T 3dr3_A 82 ATAHEVSHDLAPQFLEAGCVVFDL-SGAFRV 111 (337)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEC-SSTTSS
T ss_pred CCChHHHHHHHHHHHHCCCEEEEc-CCcccc
Confidence 999999999999999999987776 766654
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=4.4e-05 Score=66.61 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=62.1
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCC------Ce----Ee------------cCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKG------GT----EH------------LGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~------G~----~i------------~GvPVy~Sv~ea~~~~ 115 (182)
.||.|+|+ |++|+.+++.+.+ .+++++ +..+.... |+ .+ .+++|..+.+++..
T Consensus 2 ikVgIiGa-G~iG~~l~r~L~~~~~~elv-av~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~-- 77 (337)
T 1cf2_P 2 KAVAINGY-GTVGKRVADAIAQQDDMKVI-GVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD-- 77 (337)
T ss_dssp EEEEEECC-STTHHHHHHHHHTSSSEEEE-EEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--
T ss_pred eEEEEEeE-CHHHHHHHHHHHcCCCcEEE-EEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc--
Confidence 58999999 9999999998886 569998 65443311 00 00 13444446666666
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEE
Q 030169 116 KANASVIYVPPPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 116 ~~DvaVdfVpp~av~~a~~eAie~GIk~VV 145 (182)
++|++++++|+....+.+..++++|+++|.
T Consensus 78 ~vDvV~~atp~~~~~~~a~~~l~aG~~VId 107 (337)
T 1cf2_P 78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIF 107 (337)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEECCCchhhHHHHHHHHHcCCEEEE
Confidence 799999999999999999999999988443
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=61.70 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=71.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHHH-HH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AI- 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~-a~- 133 (182)
.||.++|. |.||..+++.+.+.|++++ +.|+...-.+ ..|..+.+|++|+.+ ++|+++..+|...+.+ ++
T Consensus 6 ~kIgfIGL-G~MG~~mA~~L~~~G~~V~--v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~~dvvi~~l~~~~~~~~v~~ 80 (297)
T 4gbj_A 6 EKIAFLGL-GNLGTPIAEILLEAGYELV--VWNRTASKAEPLTKLGATVVENAIDAIT--PGGIVFSVLADDAAVEELFS 80 (297)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE--EC-------CTTTTTTCEECSSGGGGCC--TTCEEEECCSSHHHHHHHSC
T ss_pred CcEEEEec-HHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHcCCeEeCCHHHHHh--cCCceeeeccchhhHHHHHH
Confidence 47999998 9999999999999999998 5554432111 137889999999988 8999999999876543 32
Q ss_pred HHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 134 MEAMEA-ELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 134 ~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+.+.. +-..+++-.+-++.++..++.+..++-
T Consensus 81 ~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~ 114 (297)
T 4gbj_A 81 MELVEKLGKDGVHVSMSTISPETSRQLAQVHEWY 114 (297)
T ss_dssp HHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhc
Confidence 222322 233344446667888888888777653
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=61.78 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=69.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
+||.|+|..|.||..+++.+.+.|.+|+ ++++... .+.+++.+ ++|++++.||+..+.+++.+...
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~--~~~~~~~----------~~~~~~~~--~aDvVilavp~~~~~~vl~~l~~ 87 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPIS--ILDREDW----------AVAESILA--NADVVIVSVPINLTLETIERLKP 87 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEE--EECTTCG----------GGHHHHHT--TCSEEEECSCGGGHHHHHHHHGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEE--EEECCcc----------cCHHHHhc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4799999449999999999999998887 6666542 25677777 79999999999999999887654
Q ss_pred c-CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 139 A-ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 139 ~-GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
. .-..+|....+++...+..+.+.
T Consensus 88 ~l~~~~iv~~~~svk~~~~~~~~~~ 112 (298)
T 2pv7_A 88 YLTENMLLADLTSVKREPLAKMLEV 112 (298)
T ss_dssp GCCTTSEEEECCSCCHHHHHHHHHH
T ss_pred hcCCCcEEEECCCCCcHHHHHHHHh
Confidence 3 22335555788888777766655
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.72 E-value=3.9e-05 Score=63.53 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=71.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe-E--ecCc--cccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT-E--HLGL--PVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~-~--i~Gv--PVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+||.|+|+ |.||+.+++.+.+. +.+|+ ++|+...-. . ..|+ ..+.+++++.+ ++|++++.+|+....+
T Consensus 7 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~--~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGL-GLIGASLALGIKRDHPHYKIV--GYNRSDRSRDIALERGIVDEATADFKVFAA--LADVIILAVPIKKTID 81 (290)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCTTSEEE--EECSSHHHHHHHHHTTSCSEEESCTTTTGG--GCSEEEECSCHHHHHH
T ss_pred ceEEEEee-CHHHHHHHHHHHhCCCCcEEE--EEcCCHHHHHHHHHcCCcccccCCHHHhhc--CCCEEEEcCCHHHHHH
Confidence 68999997 99999999998877 56776 666643110 0 1244 45677888777 7999999999999988
Q ss_pred HHHHHHHc--CCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 132 AIMEAMEA--ELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
++++.... +-..+|+...+.+......+.+...
T Consensus 82 v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~ 116 (290)
T 3b1f_A 82 FIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLK 116 (290)
T ss_dssp HHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhcc
Confidence 88876554 2234555567777766666666543
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.72 E-value=7.9e-05 Score=61.72 Aligned_cols=99 Identities=10% Similarity=0.111 Sum_probs=67.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~ 133 (182)
.+||.|+|+ |.||+.+++.+.+.|.+|+ .+|+...-. . ..|+.++++.+|+.+ ++|++++.+|... +.+++
T Consensus 4 ~~~i~iiG~-G~~G~~~a~~l~~~g~~V~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~vp~~~~~~~v~ 78 (301)
T 3cky_A 4 SIKIGFIGL-GAMGKPMAINLLKEGVTVY--AFDLMEANVAAVVAQGAQACENNQKVAA--ASDIIFTSLPNAGIVETVM 78 (301)
T ss_dssp CCEEEEECC-CTTHHHHHHHHHHTTCEEE--EECSSHHHHHHHHTTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECCCHHHHHHHH
Confidence 478999998 9999999999998898877 566543110 0 126788999999887 6999999997554 55555
Q ss_pred H---HH---HHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 134 M---EA---MEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 134 ~---eA---ie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
. +. +..| +.|+.+++|.+ .+..+|.+..
T Consensus 79 ~~~~~l~~~l~~~-~~vv~~~~~~~-~~~~~l~~~~ 112 (301)
T 3cky_A 79 NGPGGVLSACKAG-TVIVDMSSVSP-SSTLKMAKVA 112 (301)
T ss_dssp HSTTCHHHHSCTT-CEEEECCCCCH-HHHHHHHHHH
T ss_pred cCcchHhhcCCCC-CEEEECCCCCH-HHHHHHHHHH
Confidence 3 22 2223 35666577764 3444455444
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.71 E-value=5.1e-06 Score=73.91 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=66.6
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeecc--CCCCCeEecCccccccHHHHH--hccCCcEEEEeeChHHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT--PKKGGTEHLGLPVFNSVAEAK--AETKANASVIYVPPPFAAA 131 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd--p~~~G~~i~GvPVy~Sv~ea~--~~~~~DvaVdfVpp~av~~ 131 (182)
++..+|+|+|+ |..|+++++.+.+.|++++ |-+| |.+.|+.+.|+||++. +++. +..+++.+++.+ ...++
T Consensus 50 ~~~~~v~IiGA-G~~G~~l~~~l~~~g~~iv-gfiDdd~~~~g~~i~GipV~~~-~~l~~~~~~~~~~viiai--~~r~~ 124 (409)
T 2py6_A 50 GNATRLVILGT-KGFGAHLMNVRHERPCEVI-AAVDDFRYHSGELYYGLPIIST-DRFTELATHDRDLVALNT--CRYDG 124 (409)
T ss_dssp GGGCEEEEECS-SSTHHHHHSCSSSCSSEEE-EEECTTTTTSCCEETTEEEECH-HHHHHHHHTCTTEEEEEC--CCSHH
T ss_pred CCCCeEEEEeC-CHHHHHHHHHHHHCCCEEE-EEEeCCcccccCEECCEEEECH-HHHHHHHhCCCCEEEEec--cHHHH
Confidence 66678999999 9999999997777789999 8777 5777878999999986 4443 344677777777 34567
Q ss_pred HHHHHHHcCCCEEEEe
Q 030169 132 AIMEAMEAELDLVVCI 147 (182)
Q Consensus 132 a~~eAie~GIk~VV~i 147 (182)
+++.+.+.|++.++.+
T Consensus 125 i~~~l~~~g~~~il~f 140 (409)
T 2py6_A 125 PKRFFDQICRTHGIPH 140 (409)
T ss_dssp HHHHHHHHHHHTTCCE
T ss_pred HHHHHHhcCCCEEEec
Confidence 7777777776665553
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.70 E-value=7.6e-05 Score=61.48 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=70.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeE---ecCcc--ccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTE---HLGLP--VFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~---i~GvP--Vy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+||.|+|+ |.||+.+++.+.+.|. +|+ ++|+.....+ ..|+. ++++++++.+. ++|++++.+|+....+
T Consensus 2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~--~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~aDvVilavp~~~~~~ 77 (281)
T 2g5c_A 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIY--GYDINPESISKAVDLGIIDEGTTSIAKVEDF-SPDFVMLSSPVRTFRE 77 (281)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEE--EECSCHHHHHHHHHTTSCSEEESCGGGGGGT-CCSEEEECSCHHHHHH
T ss_pred cEEEEEec-CHHHHHHHHHHHhcCCCcEEE--EEeCCHHHHHHHHHCCCcccccCCHHHHhcC-CCCEEEEcCCHHHHHH
Confidence 47999997 9999999999998886 777 6776531100 12432 45677776542 5899999999999998
Q ss_pred HHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 132 AIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 132 a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
++.+.... +-..+|..+.+.+......+.+...
T Consensus 78 v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~ 111 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTDQGSVKGKLVYDLENILG 111 (281)
T ss_dssp HHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred HHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcc
Confidence 88876543 2333444466777666666666554
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.69 E-value=5.5e-05 Score=66.43 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=60.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI-ME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~-~e 135 (182)
.++|.|+|+ |+||+.+++.+..+|++|+ +.|+.... ..+...+.+++|+.+ ++|++++.+|.. .+..++ ++
T Consensus 171 gktiGIIGl-G~IG~~vA~~l~~~G~~V~--~~dr~~~~--~~~~~~~~sl~ell~--~aDvVil~vP~t~~t~~li~~~ 243 (340)
T 4dgs_A 171 GKRIGVLGL-GQIGRALASRAEAFGMSVR--YWNRSTLS--GVDWIAHQSPVDLAR--DSDVLAVCVAASAATQNIVDAS 243 (340)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE--EECSSCCT--TSCCEECSSHHHHHH--TCSEEEECC----------CHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEcCCccc--ccCceecCCHHHHHh--cCCEEEEeCCCCHHHHHHhhHH
Confidence 467999999 9999999999999999988 77776532 234566789999999 899999999943 344444 33
Q ss_pred HHHc-C-CCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 136 AMEA-E-LDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 136 Aie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.++. + =..+|+++.| +.-|...|.++.+.--+
T Consensus 244 ~l~~mk~gailIN~aRG-~vvde~aL~~aL~~g~i 277 (340)
T 4dgs_A 244 LLQALGPEGIVVNVARG-NVVDEDALIEALKSGTI 277 (340)
T ss_dssp HHHHTTTTCEEEECSCC---------------CCS
T ss_pred HHhcCCCCCEEEECCCC-cccCHHHHHHHHHcCCc
Confidence 3332 2 2357776677 55566666666554433
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.68 E-value=9.3e-05 Score=63.27 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=75.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCC--C---eE-----ecCccccc-cHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKG--G---TE-----HLGLPVFN-SVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~--G---~~-----i~GvPVy~-Sv~ea~~~~~~DvaVdfVp 125 (182)
.+||.|+|+ |.||..+++.+.+.| .+|+ ++|+... . .. ..|+ +. +++|+.+ ++|++++.||
T Consensus 24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~~V~--~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~--~aDvVi~avp 96 (317)
T 4ezb_A 24 MTTIAFIGF-GEAAQSIAGGLGGRNAARLA--AYDLRFNDPAASGALRARAAELGV--EPLDDVAGIA--CADVVLSLVV 96 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTCSEEE--EECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGG--GCSEEEECCC
T ss_pred CCeEEEECc-cHHHHHHHHHHHHcCCCeEE--EEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHh--cCCEEEEecC
Confidence 368999998 999999999999999 8888 6665431 0 00 1255 67 8888888 7999999999
Q ss_pred hHHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 126 PPFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 126 p~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+....+.+++.... .-..+|+-+++++.....++.+..++-
T Consensus 97 ~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~ 138 (317)
T 4ezb_A 97 GAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATG 138 (317)
T ss_dssp GGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 99998888665544 222344446788888888888876553
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=6.9e-05 Score=62.88 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=70.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCccccccHHHHHhccCCcEEEEeeC-hHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~GvPVy~Sv~ea~~~~~~DvaVdfVp-p~av~~a~ 133 (182)
.+||.|+|+ |.||+.+++.+.+.|.+|+ .+|+...-- . ..|+.++.+.+|+.+ ++|++++.+| +..+.+++
T Consensus 30 ~~~I~iIG~-G~mG~~~a~~l~~~g~~V~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~DvVi~av~~~~~~~~v~ 104 (316)
T 2uyy_A 30 DKKIGFLGL-GLMGSGIVSNLLKMGHTVT--VWNRTAEKCDLFIQEGARLGRTPAEVVS--TCDITFACVSDPKAAKDLV 104 (316)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSGGGGHHHHHTTCEECSCHHHHHH--HCSEEEECCSSHHHHHHHH
T ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCEEE--EEeCCHHHHHHHHHcCCEEcCCHHHHHh--cCCEEEEeCCCHHHHHHHH
Confidence 368999998 9999999999998898877 555543211 1 136778889989887 7999999999 77777776
Q ss_pred HHH------HHcCCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 134 MEA------MEAELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 134 ~eA------ie~GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.+. +..| ..|+. ..+.+.....++.+..+
T Consensus 105 ~~~~~~~~~l~~~-~~vv~-~s~~~~~~~~~l~~~~~ 139 (316)
T 2uyy_A 105 LGPSGVLQGIRPG-KCYVD-MSTVDADTVTELAQVIV 139 (316)
T ss_dssp HSTTCGGGGCCTT-CEEEE-CSCCCHHHHHHHHHHHH
T ss_pred cCchhHhhcCCCC-CEEEE-CCCCCHHHHHHHHHHHH
Confidence 542 1122 34554 44566666666666553
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=4.7e-05 Score=65.80 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=67.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHH--hCCceEEeeccCCCC--CeE---ecCccc-cccHHHHHhc---cCCcEEEEeeC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE--YGTKMVVGGVTPKKG--GTE---HLGLPV-FNSVAEAKAE---TKANASVIYVP 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~--~g~~IV~AgVdp~~~--G~~---i~GvPV-y~Sv~ea~~~---~~~DvaVdfVp 125 (182)
+..||.|+|+ |.+|+.+.+.+.+ .+.+++ +.+++... ++. ..|++. +++++++++. .++|++++.+|
T Consensus 3 ~~irVaIIG~-G~iG~~~~~~l~~~~~~~elv-av~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp 80 (312)
T 1nvm_B 3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMG-AMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (312)
T ss_dssp SCEEEEEECC-SHHHHHHHHHHHHHCSSEEEE-EEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHhhCcCeEEE-EEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence 3478999996 9999999998854 457787 66665532 222 246664 5678888764 46899999999
Q ss_pred hHHHHHHHHHHHHc--CCCEEE
Q 030169 126 PPFAAAAIMEAMEA--ELDLVV 145 (182)
Q Consensus 126 p~av~~a~~eAie~--GIk~VV 145 (182)
+....+.+..|+++ |++++.
T Consensus 81 ~~~h~~~a~~al~a~~Gk~Vi~ 102 (312)
T 1nvm_B 81 ASAHVQNEALLRQAKPGIRLID 102 (312)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEE
T ss_pred hHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999 988665
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=7.6e-05 Score=62.60 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=64.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-------------------CeE-------------ecCccc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-------------------GTE-------------HLGLPV 104 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-------------------G~~-------------i~GvPV 104 (182)
+-+||.|+|+ |.||..++..+.+.|.+|+ .+|+... |.. ...+.+
T Consensus 14 ~~~~I~VIG~-G~mG~~iA~~la~~G~~V~--~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~ 90 (302)
T 1f0y_A 14 IVKHVTVIGG-GLMGAGIAQVAAATGHTVV--LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT 90 (302)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCeEE--EEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence 3468999999 9999999999998898888 6665421 100 013456
Q ss_pred cccHHHHHhccCCcEEEEeeChHH-H-HHHHHHHHHcCC--C-EEEEeCCCCCHHHHHH
Q 030169 105 FNSVAEAKAETKANASVIYVPPPF-A-AAAIMEAMEAEL--D-LVVCITEGIPQHDMVI 158 (182)
Q Consensus 105 y~Sv~ea~~~~~~DvaVdfVpp~a-v-~~a~~eAie~GI--k-~VV~iTeG~~~eD~~~ 158 (182)
..+++|+.+ ++|++|..+|... + .+++.+ ++... . .|+..|.+++..++.+
T Consensus 91 ~~~~~~~~~--~aD~Vi~avp~~~~~~~~v~~~-l~~~~~~~~iv~s~ts~i~~~~l~~ 146 (302)
T 1f0y_A 91 STDAASVVH--STDLVVEAIVENLKVKNELFKR-LDKFAAEHTIFASNTSSLQITSIAN 146 (302)
T ss_dssp ESCHHHHTT--SCSEEEECCCSCHHHHHHHHHH-HTTTSCTTCEEEECCSSSCHHHHHT
T ss_pred ecCHHHhhc--CCCEEEEcCcCcHHHHHHHHHH-HHhhCCCCeEEEECCCCCCHHHHHH
Confidence 678887777 8999999999864 2 344443 43322 2 3444578999875543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.65 E-value=2.2e-05 Score=66.13 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=72.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccc-cccHHHHHhccCCcEEEEeeChH-HHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPV-FNSVAEAKAETKANASVIYVPPP-FAAA 131 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPV-y~Sv~ea~~~~~~DvaVdfVpp~-av~~ 131 (182)
..+||.|+|+ |.||+.+++.+.+.|.+|+ ++|+...--+ ..|... ..+++|+.+ ++|++++.+|.. .+.+
T Consensus 6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~--~~dr~~~~~~~~~~~g~~~~~~~~~e~~~--~aDvvi~~vp~~~~~~~ 80 (303)
T 3g0o_A 6 TDFHVGIVGL-GSMGMGAARSCLRAGLSTW--GADLNPQACANLLAEGACGAAASAREFAG--VVDALVILVVNAAQVRQ 80 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTTCSEEESSSTTTTT--TCSEEEECCSSHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCeEE--EEECCHHHHHHHHHcCCccccCCHHHHHh--cCCEEEEECCCHHHHHH
Confidence 3478999998 9999999999999998888 6666431101 125666 888999888 799999999986 4444
Q ss_pred HH---HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 132 AI---MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 132 a~---~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
++ ++..+. .- ..||. ++..+.....++.+..++.
T Consensus 81 v~~~~~~l~~~l~~g~ivv~-~st~~~~~~~~~~~~~~~~ 119 (303)
T 3g0o_A 81 VLFGEDGVAHLMKPGSAVMV-SSTISSADAQEIAAALTAL 119 (303)
T ss_dssp HHC--CCCGGGSCTTCEEEE-CSCCCHHHHHHHHHHHHTT
T ss_pred HHhChhhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHc
Confidence 44 222222 11 24444 6778888888887766543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=4.5e-05 Score=60.10 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=64.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E----e------cCccccccHHHHHhccCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E----H------LGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~----i------~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
+||+|+|++|.||+.+++.+.+.|.+++ .+++..... . . .++. +.+++++.+ ++|++++.+|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~D~Vi~~~~~~ 75 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIV--VGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAE--ACDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEE--EEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHH--HCSEEEECSCHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHh--cCCEEEEeCChh
Confidence 4799999779999999999998898887 555542110 0 0 1144 467888777 799999999999
Q ss_pred HHHHHHHHHHHc-CCCEEEEeCCCCCH
Q 030169 128 FAAAAIMEAMEA-ELDLVVCITEGIPQ 153 (182)
Q Consensus 128 av~~a~~eAie~-GIk~VV~iTeG~~~ 153 (182)
...+++++..+. .=..++.+++|++.
T Consensus 76 ~~~~~~~~l~~~~~~~~vi~~~~g~~~ 102 (212)
T 1jay_A 76 HAIDTARDLKNILREKIVVSPLVPVSR 102 (212)
T ss_dssp HHHHHHHHTHHHHTTSEEEECCCCEEC
T ss_pred hHHHHHHHHHHHcCCCEEEEcCCCcCc
Confidence 988887654331 23467777888883
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=97.64 E-value=9e-05 Score=69.06 Aligned_cols=96 Identities=8% Similarity=0.117 Sum_probs=73.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHh------CCceEEeeccCCCCCe---EecCcccc----ccHHHHHhccCCcEEEEeeC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY------GTKMVVGGVTPKKGGT---EHLGLPVF----NSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~------g~~IV~AgVdp~~~G~---~i~GvPVy----~Sv~ea~~~~~~DvaVdfVp 125 (182)
++|.|+|. |.||..+++.+.+. |.+++ .+.+....-. ...|+.+. .+++|+.+ +.|++++.+|
T Consensus 55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~Vi-Vg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~--~ADVVILaVP 130 (525)
T 3fr7_A 55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-IGLRKGSKSFDEARAAGFTEESGTLGDIWETVS--GSDLVLLLIS 130 (525)
T ss_dssp SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEE-EEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHH--HCSEEEECSC
T ss_pred CEEEEEeE-hHHHHHHHHHHHhcccccCCCCEEE-EEeCCchhhHHHHHHCCCEEecCCCCCHHHHHh--cCCEEEECCC
Confidence 68999998 99999999999988 99888 5665532111 12477763 68999988 7999999999
Q ss_pred hHHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHH
Q 030169 126 PPFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVI 158 (182)
Q Consensus 126 p~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~ 158 (182)
+....+++.+...+ .-..++.++.|++.+.+.+
T Consensus 131 ~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~ 164 (525)
T 3fr7_A 131 DAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQS 164 (525)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhh
Confidence 99888887764443 2334678899999887764
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.62 E-value=7.4e-05 Score=65.46 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=76.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhc--cCCcEEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAE--TKANASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~--~~~DvaVdfVpp~av~~a 132 (182)
.+||.|+|+ |.||..+++.+.+.|.+|+ +.|+.....+ ..|+.++.+++++.++ .++|++++.+|+..+.++
T Consensus 8 ~~kIgIIG~-G~mG~slA~~L~~~G~~V~--~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~v 84 (341)
T 3ktd_A 8 SRPVCILGL-GLIGGSLLRDLHAANHSVF--GYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSL 84 (341)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTCCEE--EECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHH
T ss_pred CCEEEEEee-cHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHH
Confidence 367999997 9999999999999998888 7776542111 1367778888887653 158999999999998888
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
+++.....-..+|.-..++...-...+.+..
T Consensus 85 l~~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~ 115 (341)
T 3ktd_A 85 LDAVHTHAPNNGFTDVVSVKTAVYDAVKARN 115 (341)
T ss_dssp HHHHHHHCTTCCEEECCSCSHHHHHHHHHTT
T ss_pred HHHHHccCCCCEEEEcCCCChHHHHHHHHhC
Confidence 8776655434455447778877666666553
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=5.2e-05 Score=65.03 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=67.6
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC----------------CeEe-cCccccccHHHHHhccCCcEEEE
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG----------------GTEH-LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~----------------G~~i-~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
||.|+|+ |.||..++..+.+.|.+|. .+++... |... .++.+.++++|+.+ ++|++++
T Consensus 17 kI~iIG~-G~mG~~la~~L~~~G~~V~--~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDvVil 91 (366)
T 1evy_A 17 KAVVFGS-GAFGTALAMVLSKKCREVC--VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN--GAEIILF 91 (366)
T ss_dssp EEEEECC-SHHHHHHHHHHTTTEEEEE--EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT--TCSSEEE
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHc--CCCEEEE
Confidence 8999999 9999999999998887776 5554320 0000 13456678888877 7999999
Q ss_pred eeChHHHHHHHHH----H---HHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 123 YVPPPFAAAAIME----A---MEA-ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 123 fVpp~av~~a~~e----A---ie~-GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
.+|+..+.+++.+ . +.. |. .||.++.|++.++...+.+.
T Consensus 92 av~~~~~~~v~~~~~~gl~~~l~~~~~-ivv~~~~gi~~~~~~~~~~~ 138 (366)
T 1evy_A 92 VIPTQFLRGFFEKSGGNLIAYAKEKQV-PVLVCTKGIERSTLKFPAEI 138 (366)
T ss_dssp CCCHHHHHHHHHHHCHHHHHHHHHHTC-CEEECCCSCCTTTCCCHHHH
T ss_pred CCChHHHHHHHHHhHHHHHHhcCccCC-EEEEECCcCCCccccCHHHH
Confidence 9999888888776 3 333 43 45555779887654433333
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=6.9e-05 Score=65.53 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=65.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEec----------CccccccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHL----------GLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~----------GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
.+||.|+|++|..|+.+.+.+.+.. ++++ +-.+....|+.+. .+.+. ++++ .+ ++|+++..+|.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv-~v~s~~~~g~~~~~~~~~~~g~~~~~~~-~~~~-~~--~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVK-QVTSRRFAGEPVHFVHPNLRGRTNLKFV-PPEK-LE--PADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEE-EEBCSTTTTSBGGGTCGGGTTTCCCBCB-CGGG-CC--CCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEE-EEECchhhCchhHHhCchhcCccccccc-chhH-hc--CCCEEEEcCCc
Confidence 4789999999999999999888654 7888 7666555554332 22222 2333 23 79999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
....+.+..++++|++.|-. +.-+
T Consensus 79 ~~s~~~a~~~~~aG~~VId~-Sa~~ 102 (345)
T 2ozp_A 79 GVFAREFDRYSALAPVLVDL-SADF 102 (345)
T ss_dssp THHHHTHHHHHTTCSEEEEC-SSTT
T ss_pred HHHHHHHHHHHHCCCEEEEc-Cccc
Confidence 99999999999999985554 6534
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=6.7e-05 Score=68.20 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=71.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee------cCccccccHHHHHhcc-CCcEEEEeeCh-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH------LGLPVFNSVAEAKAET-KANASVIYVPP-PF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i------~GvPVy~Sv~ea~~~~-~~DvaVdfVpp-~a 128 (182)
.++|.|+|+ |.||+.++..+.+.|.+|+ +.|+...-. +. .|+.+..+++|+.+.. ++|++++.||+ ..
T Consensus 15 ~~~IgvIGl-G~MG~~lA~~La~~G~~V~--v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 91 (480)
T 2zyd_A 15 KQQIGVVGM-AVMGRNLALNIESRGYTVS--IFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG 91 (480)
T ss_dssp CBSEEEECC-SHHHHHHHHHHHTTTCCEE--EECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred CCeEEEEcc-HHHHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence 467999998 9999999999999998887 666543110 01 1677889999988731 39999999999 47
Q ss_pred HHHHHHHHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 129 AAAAIMEAMEA-E-LDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 129 v~~a~~eAie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.+++++.... . =..||..++|.+. +..++.+..++
T Consensus 92 v~~vl~~l~~~l~~g~iIId~s~g~~~-~t~~l~~~l~~ 129 (480)
T 2zyd_A 92 TDAAIDSLKPYLDKGDIIIDGGNTFFQ-DTIRRNRELSA 129 (480)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHHHH
Confidence 88888765543 1 1356665666544 44445554433
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=60.19 Aligned_cols=99 Identities=10% Similarity=-0.112 Sum_probs=65.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e--cCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H--LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i--~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
+||.|+|+ |.||+.+++.+.+ |.+++ .+|+.....+ . .|+.+++ .+|+.+ ++|++++.+|... +.++++
T Consensus 2 ~~i~iiG~-G~~G~~~a~~l~~-g~~V~--~~~~~~~~~~~~~~~g~~~~~-~~~~~~--~~D~vi~~v~~~~~~~~v~~ 74 (289)
T 2cvz_A 2 EKVAFIGL-GAMGYPMAGHLAR-RFPTL--VWNRTFEKALRHQEEFGSEAV-PLERVA--EARVIFTCLPTTREVYEVAE 74 (289)
T ss_dssp CCEEEECC-STTHHHHHHHHHT-TSCEE--EECSSTHHHHHHHHHHCCEEC-CGGGGG--GCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEcc-cHHHHHHHHHHhC-CCeEE--EEeCCHHHHHHHHHCCCcccC-HHHHHh--CCCEEEEeCCChHHHHHHHH
Confidence 47999998 9999999999999 98877 5665431100 1 2556666 677666 7999999999775 666665
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 135 EAMEA-ELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+..+. .-..+|+........+..++.+..+
T Consensus 75 ~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~ 105 (289)
T 2cvz_A 75 ALYPYLREGTYWVDATSGEPEASRRLAERLR 105 (289)
T ss_dssp HHTTTCCTTEEEEECSCCCHHHHHHHHHHHH
T ss_pred HHHhhCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence 44332 2223333345566666666666554
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=1.9e-05 Score=64.23 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=66.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe-E---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT-E---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~-~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
+||.|+|+ |.||+.++..+.+.| .++. .+|+...-- . ..|+.++.+.+++. ++|++++.+|+..+.+++
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~~~v~--~~~r~~~~~~~~~~~~g~~~~~~~~~~~---~~D~vi~~v~~~~~~~v~ 74 (263)
T 1yqg_A 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY--IANRGAEKRERLEKELGVETSATLPELH---SDDVLILAVKPQDMEAAC 74 (263)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEE--EECSSHHHHHHHHHHTCCEEESSCCCCC---TTSEEEECSCHHHHHHHH
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCeEE--EECCCHHHHHHHHHhcCCEEeCCHHHHh---cCCEEEEEeCchhHHHHH
Confidence 47999998 999999999999888 7777 566543110 1 12677887877655 589999999988887777
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHH
Q 030169 134 MEAMEAELDLVVCITEGIPQHDMVI 158 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~eD~~~ 158 (182)
.+... .=+.|+-++.|++.+++.+
T Consensus 75 ~~l~~-~~~ivv~~~~g~~~~~l~~ 98 (263)
T 1yqg_A 75 KNIRT-NGALVLSVAAGLSVGTLSR 98 (263)
T ss_dssp TTCCC-TTCEEEECCTTCCHHHHHH
T ss_pred HHhcc-CCCEEEEecCCCCHHHHHH
Confidence 65433 3234555568999854443
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.57 E-value=3.4e-05 Score=65.68 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=69.2
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eEe--c-----------CccccccHHHHHhccCCcEEE
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TEH--L-----------GLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~i--~-----------GvPVy~Sv~ea~~~~~~DvaV 121 (182)
.-++||.|+|+ |.||..+...+.+.|.+|. .+++...- +.+ . ++.+.++.++ .+ ++|+++
T Consensus 12 ~~~~kI~iIG~-G~mG~ala~~L~~~G~~V~--~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~--~aDvVi 85 (335)
T 1z82_A 12 HMEMRFFVLGA-GSWGTVFAQMLHENGEEVI--LWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IK--KEDILV 85 (335)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CC--TTEEEE
T ss_pred ccCCcEEEECc-CHHHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hc--CCCEEE
Confidence 34689999999 9999999999999888877 45543200 000 1 2567778887 66 789999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 122 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
+.||+..+.+++++... .=+.||.++.|++.++...+.+.
T Consensus 86 l~vk~~~~~~v~~~l~~-~~~~vv~~~nGi~~~~~~~l~~~ 125 (335)
T 1z82_A 86 IAIPVQYIREHLLRLPV-KPSMVLNLSKGIEIKTGKRVSEI 125 (335)
T ss_dssp ECSCGGGHHHHHTTCSS-CCSEEEECCCCCCTTTCCCHHHH
T ss_pred EECCHHHHHHHHHHhCc-CCCEEEEEeCCCCCCccCcHHHH
Confidence 99999888888765333 22457776889987554444443
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.56 E-value=2.7e-05 Score=64.72 Aligned_cols=94 Identities=15% Similarity=0.226 Sum_probs=67.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee--cCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH--LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i--~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
+||.|+|++|+||+.+++.+.+.|.+|+ ++|+...-. .. .|+.+. +..++.+ ++|++++.+|+..+.+++++
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~--~~~r~~~~~~~~~~~g~~~~-~~~~~~~--~aDvVi~av~~~~~~~v~~~ 86 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLA--AIEIAPEGRDRLQGMGIPLT-DGDGWID--EADVVVLALPDNIIEKVAED 86 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEE--EECCSHHHHHHHHHTTCCCC-CSSGGGG--TCSEEEECSCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHhcCCCcC-CHHHHhc--CCCEEEEcCCchHHHHHHHH
Confidence 5899999999999999999999998888 666543110 01 245443 5666666 79999999999998888876
Q ss_pred HHHc-C-CCEEEEeCCCCCHHHHH
Q 030169 136 AMEA-E-LDLVVCITEGIPQHDMV 157 (182)
Q Consensus 136 Aie~-G-Ik~VV~iTeG~~~eD~~ 157 (182)
.... . =..|+-.++|.+.+.+.
T Consensus 87 l~~~l~~~~ivv~~s~~~~~~~l~ 110 (286)
T 3c24_A 87 IVPRVRPGTIVLILDAAAPYAGVM 110 (286)
T ss_dssp HGGGSCTTCEEEESCSHHHHHTCS
T ss_pred HHHhCCCCCEEEECCCCchhHHHH
Confidence 6543 2 23555567887655443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00014 Score=65.62 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=70.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E---e---cCccccccHHHHHhc-cCCcEEEEeeChH-HH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E---H---LGLPVFNSVAEAKAE-TKANASVIYVPPP-FA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~---i---~GvPVy~Sv~ea~~~-~~~DvaVdfVpp~-av 129 (182)
+||.|+|+ |.||+.++..+.+.|.+|. .+|+...-- . . .|+.++.+++|+.+. .++|++++.||+. .+
T Consensus 6 ~~IgvIG~-G~mG~~lA~~L~~~G~~V~--v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v 82 (474)
T 2iz1_A 6 ANFGVVGM-AVMGKNLALNVESRGYTVA--IYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAAT 82 (474)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHH
T ss_pred CcEEEEee-HHHHHHHHHHHHhCCCEEE--EEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHH
Confidence 67999998 9999999999999998877 666543110 0 1 167889999998873 1499999999995 67
Q ss_pred HHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 130 AAAIMEAMEA---ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 130 ~~a~~eAie~---GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.+++++.... | ..||..++|.+ .+..++.+..+.
T Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~~~~-~~~~~l~~~l~~ 119 (474)
T 2iz1_A 83 DATIKSLLPLLDIG-DILIDGGNTHF-PDTMRRNAELAD 119 (474)
T ss_dssp HHHHHHHGGGCCTT-CEEEECSCCCH-HHHHHHHHHTTT
T ss_pred HHHHHHHHhhCCCC-CEEEECCCCCH-HHHHHHHHHHHH
Confidence 7777654432 3 34555455654 455555555543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00021 Score=55.97 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=61.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee-c-------CccccccHHHHHhccCCcEEEEeeChH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH-L-------GLPVFNSVAEAKAETKANASVIYVPPP- 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i-~-------GvPVy~Sv~ea~~~~~~DvaVdfVpp~- 127 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +++...... .. . ++-=..+++++.+ ++|+++....+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~ 79 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVT--AVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCK--GADAVISAFNPGW 79 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEE--EECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHT--TCSEEEECCCC--
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEE--EEEcCcccchhccCceEEEEecCCCHHHHHHHhc--CCCEEEEeCcCCC
Confidence 36899999999999999999999999988 444332110 01 1 2222233566666 799999887654
Q ss_pred -----------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 128 -----------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 128 -----------av~~a~~eAie~GIk~VV~iTe 149 (182)
.+..+++.|.++|++.+|.+++
T Consensus 80 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 80 NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp ----CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 4667788888889988777664
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=57.48 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=60.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eEec-------Cccc-cccHHHHHhccCCcEEEEeeChH--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TEHL-------GLPV-FNSVAEAKAETKANASVIYVPPP-- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~i~-------GvPV-y~Sv~ea~~~~~~DvaVdfVpp~-- 127 (182)
|||+|.|++|..|+.+++.+.+.|.+|+ + ++..... .+.. ++-= ..+++++.+ ++|+++......
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~-~-~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~--~~d~vi~~ag~~~~ 76 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIY-A-GARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLH--GMDAIINVSGSGGK 76 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEE-E-EESSGGGSCCCTTEEEEECCTTSCHHHHHTTTT--TCSEEEECCCCTTS
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEE-E-EECCccchhhcCCceEEEecccCCHHHHHHHHc--CCCEEEECCcCCCC
Confidence 5799999999999999999999999988 4 3332211 0111 2221 223444455 799999887643
Q ss_pred --------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 128 --------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 128 --------av~~a~~eAie~GIk~VV~iTe 149 (182)
.+..+++.|.+.|++.+|.+++
T Consensus 77 ~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 77 SLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp SCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 3678888888999988887664
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.51 E-value=9.1e-05 Score=64.71 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=62.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeec-cCCCCCeEe----------------cCccccc-cHHHHHhccCCc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGV-TPKKGGTEH----------------LGLPVFN-SVAEAKAETKAN 118 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgV-dp~~~G~~i----------------~GvPVy~-Sv~ea~~~~~~D 118 (182)
.+||.|.|++|..|+.+.+.+.+. +++++ +.. +....|+.+ ..+++.+ +.++ .+ ++|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv-ai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--~vD 79 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELV-KVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HK--DVD 79 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEE-EEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GT--TCS
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEE-EEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hc--CCC
Confidence 478999999999999999988764 48888 554 233334322 1222221 2233 23 799
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 119 ASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 119 vaVdfVpp~av~~a~~eAie~GIk~VV~iTeG 150 (182)
++++.+|.....+.+..++++|+++|-. +.-
T Consensus 80 vVf~atp~~~s~~~a~~~~~aG~~VId~-s~~ 110 (350)
T 2ep5_A 80 VVLSALPNELAESIELELVKNGKIVVSN-ASP 110 (350)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEEC-SST
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEEC-Ccc
Confidence 9999999999999999999999995554 543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=66.45 Aligned_cols=102 Identities=11% Similarity=0.069 Sum_probs=70.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--CeE---e---cCccccccHHHHHhcc-CCcEEEEeeCh-HH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--GTE---H---LGLPVFNSVAEAKAET-KANASVIYVPP-PF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--G~~---i---~GvPVy~Sv~ea~~~~-~~DvaVdfVpp-~a 128 (182)
.+|.|+|. |.||+.++..+.+.|.+|+ +.|+... ..- . .|+.+..+++|+.+.. ++|++++.||+ ..
T Consensus 11 ~~IgvIGl-G~MG~~lA~~La~~G~~V~--v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 87 (497)
T 2p4q_A 11 ADFGLIGL-AVMGQNLILNAADHGFTVC--AYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAP 87 (497)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHH
T ss_pred CCEEEEee-HHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHH
Confidence 57999998 9999999999999998887 5555431 100 0 3677888999988731 39999999999 57
Q ss_pred HHHHHHHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 129 AAAAIMEAMEA-EL-DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 129 v~~a~~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+.+++++.... .- ..||-.+++ ...+..++.+..+
T Consensus 88 v~~vl~~l~~~l~~g~iIId~s~~-~~~~~~~l~~~l~ 124 (497)
T 2p4q_A 88 VDALINQIVPLLEKGDIIIDGGNS-HFPDSNRRYEELK 124 (497)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCC-ChhHHHHHHHHHH
Confidence 77887665543 11 245554554 4555555555443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0001 Score=64.23 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=68.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH---
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI--- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~--- 133 (182)
.++|.|+|+ |+||+.+++.+...|++|+ +.|+.... ..|+..+.+++|+.+ ++|++++.+|.. ....++
T Consensus 164 g~~vgIIG~-G~iG~~vA~~l~~~G~~V~--~~dr~~~~--~~g~~~~~~l~ell~--~aDvVil~vP~~~~t~~li~~~ 236 (333)
T 3ba1_A 164 GKRVGIIGL-GRIGLAVAERAEAFDCPIS--YFSRSKKP--NTNYTYYGSVVELAS--NSDILVVACPLTPETTHIINRE 236 (333)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTTCCEE--EECSSCCT--TCCSEEESCHHHHHH--TCSEEEECSCCCGGGTTCBCHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EECCCchh--ccCceecCCHHHHHh--cCCEEEEecCCChHHHHHhhHH
Confidence 356999999 9999999999999999988 77776532 236667889999988 899999999985 333333
Q ss_pred -HHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 134 -MEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 134 -~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
...++.| ..+++++.|..... ..|.++.
T Consensus 237 ~l~~mk~g-ailIn~srG~~vd~-~aL~~aL 265 (333)
T 3ba1_A 237 VIDALGPK-GVLINIGRGPHVDE-PELVSAL 265 (333)
T ss_dssp HHHHHCTT-CEEEECSCGGGBCH-HHHHHHH
T ss_pred HHhcCCCC-CEEEECCCCchhCH-HHHHHHH
Confidence 1223333 35677677755543 4444443
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00037 Score=62.86 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=72.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-------CeE----------------ecCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-------GTE----------------HLGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-------G~~----------------i~GvPVy~Sv~ea~~~~ 115 (182)
+||.|+|+ |.||..++..+.+.|.+|+ ++|.... |.. ...+.+..+++++.+
T Consensus 3 mkI~VIG~-G~vG~~lA~~La~~G~~V~--~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~-- 77 (450)
T 3gg2_A 3 LDIAVVGI-GYVGLVSATCFAELGANVR--CIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP-- 77 (450)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG--
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCCEEE--EEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh--
Confidence 68999998 9999999999999999888 6665431 100 012455667888777
Q ss_pred CCcEEEEeeChH----------HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 116 KANASVIYVPPP----------FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 116 ~~DvaVdfVpp~----------av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
++|++++.||.. .+.++++...+. .-..+|+..+.+++.-.+++.+..+
T Consensus 78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~ 137 (450)
T 3gg2_A 78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQ 137 (450)
T ss_dssp GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHH
Confidence 799999999887 788887776654 2334444466788777776665543
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00011 Score=63.16 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=70.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH-H
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM-E 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~-e 135 (182)
.++|.|+|+ |+||+.+++.+..+|++|+ +.|+... .. +...+.+++|+.+ ++|++++.+|... ...++. +
T Consensus 124 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~--~~dr~~~-~~--~~~~~~~l~ell~--~aDvV~l~~P~~~~t~~~i~~~ 195 (303)
T 1qp8_A 124 GEKVAVLGL-GEIGTRVGKILAALGAQVR--GFSRTPK-EG--PWRFTNSLEEALR--EARAAVCALPLNKHTRGLVKYQ 195 (303)
T ss_dssp TCEEEEESC-STHHHHHHHHHHHTTCEEE--EECSSCC-CS--SSCCBSCSHHHHT--TCSEEEECCCCSTTTTTCBCHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHCCCEEE--EECCCcc-cc--CcccCCCHHHHHh--hCCEEEEeCcCchHHHHHhCHH
Confidence 467999998 9999999999999999988 7887654 22 4445678999988 7999999999874 444443 2
Q ss_pred HHHc-C-CCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 136 AMEA-E-LDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 136 Aie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.++. + =..+|+++.| +.-|...|.++.++-.|
T Consensus 196 ~l~~mk~gailin~srg-~~vd~~aL~~aL~~g~i 229 (303)
T 1qp8_A 196 HLALMAEDAVFVNVGRA-EVLDRDGVLRILKERPQ 229 (303)
T ss_dssp HHTTSCTTCEEEECSCG-GGBCHHHHHHHHHHCTT
T ss_pred HHhhCCCCCEEEECCCC-cccCHHHHHHHHHhCCc
Confidence 3322 1 1347775665 44555556555544334
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00041 Score=55.62 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=57.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.+||.|+|+ |.||+.+++.+.+.|.+++ .+++... +.+ ++|++++.+|+..+.+++++..
T Consensus 19 ~~~I~iiG~-G~mG~~la~~l~~~g~~V~--~~~~~~~---------------~~~--~aD~vi~av~~~~~~~v~~~l~ 78 (209)
T 2raf_A 19 GMEITIFGK-GNMGQAIGHNFEIAGHEVT--YYGSKDQ---------------ATT--LGEIVIMAVPYPALAALAKQYA 78 (209)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECTTCC---------------CSS--CCSEEEECSCHHHHHHHHHHTH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEcCCHH---------------Hhc--cCCEEEEcCCcHHHHHHHHHHH
Confidence 367999997 9999999999999998888 6676542 233 7899999999998888887654
Q ss_pred Hc-CCCEEEEeCCCCC
Q 030169 138 EA-ELDLVVCITEGIP 152 (182)
Q Consensus 138 e~-GIk~VV~iTeG~~ 152 (182)
.. .=..|+.++.|++
T Consensus 79 ~~~~~~~vi~~~~g~~ 94 (209)
T 2raf_A 79 TQLKGKIVVDITNPLN 94 (209)
T ss_dssp HHHTTSEEEECCCCBC
T ss_pred HhcCCCEEEEECCCCC
Confidence 32 2245666789887
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00031 Score=63.56 Aligned_cols=102 Identities=10% Similarity=0.076 Sum_probs=69.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--e-----cCccccccHHHHHhc-cCCcEEEEeeChH-H
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--H-----LGLPVFNSVAEAKAE-TKANASVIYVPPP-F 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i-----~GvPVy~Sv~ea~~~-~~~DvaVdfVpp~-a 128 (182)
+||.|+|+ |.||+.++..+.+.|.+|. ++|+...-- . . .|+.++.+++|+.+. .++|++++.||+. .
T Consensus 3 m~IgvIG~-G~mG~~lA~~La~~G~~V~--v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~ 79 (482)
T 2pgd_A 3 ADIALIGL-AVMGQNLILNMNDHGFVVC--AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (482)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CeEEEECh-HHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHH
Confidence 67999998 9999999999999998877 666543110 0 0 357788999998752 2699999999995 6
Q ss_pred HHHHHHHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 129 AAAAIMEAMEA-EL-DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 129 v~~a~~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+.+++++.... .- ..||..++|.+ .+..++.+..+
T Consensus 80 v~~vl~~l~~~l~~g~iII~~s~~~~-~~~~~l~~~l~ 116 (482)
T 2pgd_A 80 VDNFIEKLVPLLDIGDIIIDGGNSEY-RDTMRRCRDLK 116 (482)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHHH
Confidence 77777665443 11 35555456655 44444444443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00034 Score=61.18 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=68.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--------CeE---e------cCccccccHHHHHhccCCcEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--------GTE---H------LGLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--------G~~---i------~GvPVy~Sv~ea~~~~~~Dva 120 (182)
.+||.|+|+ |.||..++..+.+.|.++. .+++... +.. . .++.+.++++|+.+ ++|++
T Consensus 29 ~mkI~VIGa-G~mG~alA~~La~~G~~V~--l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~--~aDvV 103 (356)
T 3k96_A 29 KHPIAILGA-GSWGTALALVLARKGQKVR--LWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLE--GVTDI 103 (356)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHTTTCCEE--EECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHT--TCCEE
T ss_pred CCeEEEECc-cHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHh--cCCEE
Confidence 478999999 9999999999999887777 4444311 100 0 12445678888888 79999
Q ss_pred EEeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030169 121 VIYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 155 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~eD 155 (182)
++.||+....+++++.... . =..||.++.|+..+.
T Consensus 104 ilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t 140 (356)
T 3k96_A 104 LIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS 140 (356)
T ss_dssp EECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTT
T ss_pred EECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCc
Confidence 9999999988888776543 1 234666689998763
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00035 Score=56.83 Aligned_cols=88 Identities=23% Similarity=0.182 Sum_probs=60.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeec-cCCCCCe-EecCccc-------cccHHHHHhccCCcEEEEeeCh--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGV-TPKKGGT-EHLGLPV-------FNSVAEAKAETKANASVIYVPP-- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgV-dp~~~G~-~i~GvPV-------y~Sv~ea~~~~~~DvaVdfVpp-- 126 (182)
|||+|.|++|..|+.+++.+.+. |.+|+ +.+ ++.+... ...++.+ ..+++++.+ ++|+++.....
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~-~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~~ 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFH-IGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFK--GMDTVVFIPSIIH 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEE-EEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTT--TCSEEEECCCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEE-EEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCc
Confidence 57999999999999999998887 88888 532 2222110 0012222 233566666 79999988764
Q ss_pred ------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 ------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ------~av~~a~~eAie~GIk~VV~iTe 149 (182)
.....+++.|.++|++.+|.+++
T Consensus 78 ~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 78 PSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 45677888888999998877553
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0002 Score=58.59 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=63.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC---------------eE---ecCccccccHHHHHhccCCcE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG---------------TE---HLGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G---------------~~---i~GvPVy~Sv~ea~~~~~~Dv 119 (182)
.+||.|+|+ |.||+.+++.+.+.|.+|+ ..|+...- .+ ..+...+.+.+|+.+ ++|+
T Consensus 19 ~~kIgiIG~-G~mG~alA~~L~~~G~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~aDv 93 (245)
T 3dtt_A 19 GMKIAVLGT-GTVGRTMAGALADLGHEVT--IGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAA--GAEL 93 (245)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE--EEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHH--HCSE
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCEEE--EEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHh--cCCE
Confidence 478999998 9999999999999998888 44443311 00 113445778899888 7999
Q ss_pred EEEeeChHHHHHHHHHH-HHc-CCCEEEEeCCCC
Q 030169 120 SVIYVPPPFAAAAIMEA-MEA-ELDLVVCITEGI 151 (182)
Q Consensus 120 aVdfVpp~av~~a~~eA-ie~-GIk~VV~iTeG~ 151 (182)
+++.+|+....+++.+. ... .=+.||.++.|+
T Consensus 94 Vilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~~ 127 (245)
T 3dtt_A 94 VVNATEGASSIAALTAAGAENLAGKILVDIANPL 127 (245)
T ss_dssp EEECSCGGGHHHHHHHHCHHHHTTSEEEECCCCE
T ss_pred EEEccCcHHHHHHHHHhhhhhcCCCEEEECCCCC
Confidence 99999999988887654 221 224566666443
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=61.09 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=62.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccC--CC--------CCe------EecCccccc--cHHHHHhccCCcEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP--KK--------GGT------EHLGLPVFN--SVAEAKAETKANAS 120 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp--~~--------~G~------~i~GvPVy~--Sv~ea~~~~~~Dva 120 (182)
+||.|+|+ |.||+.++..+.+.|.+|+ .+++ .. .|. +...+.+.+ +++|+.+ ++|++
T Consensus 1 m~I~iiG~-G~mG~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~D~v 75 (335)
T 1txg_A 1 MIVSILGA-GAMGSALSVPLVDNGNEVR--IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE--NAEVV 75 (335)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEE--EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT--TCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE--EEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHh--cCCEE
Confidence 47999998 9999999999998898877 5655 21 010 001124555 7777776 79999
Q ss_pred EEeeChHHHHHHHHHHHHcC-CCEEEEeCCCC
Q 030169 121 VIYVPPPFAAAAIMEAMEAE-LDLVVCITEGI 151 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~G-Ik~VV~iTeG~ 151 (182)
++.+|+..+.+++++....+ =..|+.++.|+
T Consensus 76 i~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 76 LLGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (335)
T ss_dssp EECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred EEcCChHHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence 99999999888887654311 12466656798
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=64.61 Aligned_cols=92 Identities=9% Similarity=-0.035 Sum_probs=67.6
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEec----------------CccccccHHHHHhccCCc
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHL----------------GLPVFNSVAEAKAETKAN 118 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~----------------GvPVy~Sv~ea~~~~~~D 118 (182)
.+..||.|+|+||--|+.+.+.+.+.. ++|+ .-......|+.+. ++++.+.-.+..+ ++|
T Consensus 5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~-~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~--~vD 81 (359)
T 4dpk_A 5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPA-YLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMD--DVD 81 (359)
T ss_dssp -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEE-EEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCT--TCC
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCceEE-EEECchhcCCChhHhcccccccccccccccceEEeCCHHHhc--CCC
Confidence 356799999999999999999877654 8888 6666666665542 2222221111123 799
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 119 ASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 119 vaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
+++..+|...+.+.+..++++|.+.|-. +.-+
T Consensus 82 vvf~a~p~~~s~~~a~~~~~~G~~vIDl-Sa~~ 113 (359)
T 4dpk_A 82 IIFSPLPQGAAGPVEEQFAKEGFPVISN-SPDH 113 (359)
T ss_dssp EEEECCCTTTHHHHHHHHHHTTCEEEEC-SSTT
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEEc-CCCc
Confidence 9999999999999999999999988876 6433
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=64.61 Aligned_cols=92 Identities=9% Similarity=-0.035 Sum_probs=67.6
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEec----------------CccccccHHHHHhccCCc
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHL----------------GLPVFNSVAEAKAETKAN 118 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~----------------GvPVy~Sv~ea~~~~~~D 118 (182)
.+..||.|+|+||--|+.+.+.+.+.. ++|+ .-......|+.+. ++++.+.-.+..+ ++|
T Consensus 5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~-~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~--~vD 81 (359)
T 4dpl_A 5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPA-YLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMD--DVD 81 (359)
T ss_dssp -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEE-EEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCT--TCC
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCceEE-EEECchhcCCChhHhcccccccccccccccceEEeCCHHHhc--CCC
Confidence 356799999999999999999877654 8888 6666666665542 2222221111123 799
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 119 ASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 119 vaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
+++..+|...+.+.+..++++|.+.|-. +.-+
T Consensus 82 vvf~a~p~~~s~~~a~~~~~~G~~vIDl-Sa~~ 113 (359)
T 4dpl_A 82 IIFSPLPQGAAGPVEEQFAKEGFPVISN-SPDH 113 (359)
T ss_dssp EEEECCCTTTHHHHHHHHHHTTCEEEEC-SSTT
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEEc-CCCc
Confidence 9999999999999999999999988876 6433
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00014 Score=62.58 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=68.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeCh-HHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp-~av~~a~~eA 136 (182)
.++|.|+|+ |+||+.+++.+..+|++|+ ++|+.... ...+....+++|+.+ ++|++++.+|. ..+..++.+.
T Consensus 122 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~--~~dr~~~~--~~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~ 194 (290)
T 3gvx_A 122 GKALGILGY-GGIGRRVAHLAKAFGMRVI--AYTRSSVD--QNVDVISESPADLFR--QSDFVLIAIPLTDKTRGMVNSR 194 (290)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCEEE--EECSSCCC--TTCSEECSSHHHHHH--HCSEEEECCCCCTTTTTCBSHH
T ss_pred cchheeecc-CchhHHHHHHHHhhCcEEE--EEeccccc--cccccccCChHHHhh--ccCeEEEEeeccccchhhhhHH
Confidence 467999999 9999999999999999999 78876532 233566679999998 79999999995 3344443222
Q ss_pred HHcCC---CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 137 MEAEL---DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 137 ie~GI---k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.-..+ ..+|+++.|-.+.+ ..|.++.+
T Consensus 195 ~l~~mk~gailIN~aRG~~vd~-~aL~~aL~ 224 (290)
T 3gvx_A 195 LLANARKNLTIVNVARADVVSK-PDMIGFLK 224 (290)
T ss_dssp HHTTCCTTCEEEECSCGGGBCH-HHHHHHHH
T ss_pred HHhhhhcCceEEEeehhcccCC-cchhhhhh
Confidence 22222 24777566655544 44444443
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00078 Score=61.75 Aligned_cols=103 Identities=11% Similarity=0.076 Sum_probs=68.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE------ecC--ccccccHHHHHhcc-CCcEEEEeeChH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE------HLG--LPVFNSVAEAKAET-KANASVIYVPPP 127 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~------i~G--vPVy~Sv~ea~~~~-~~DvaVdfVpp~ 127 (182)
+.++|.|+|. |.||..++..+.+.|.+|+ +.|+...--+ ..+ +..+.+++|+.+.. ++|++++.||+.
T Consensus 3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~~V~--v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~ 79 (484)
T 4gwg_A 3 AQADIALIGL-AVMGQNLILNMNDHGFVVC--AFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAG 79 (484)
T ss_dssp CCBSEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred CCCEEEEECh-hHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCCh
Confidence 3468999998 9999999999999999888 6665542110 113 33468899988742 589999999995
Q ss_pred -HHHHHHHHHHHc-C-CCEEEEeCCCCCHHHHHHHHHHh
Q 030169 128 -FAAAAIMEAMEA-E-LDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 128 -av~~a~~eAie~-G-Ik~VV~iTeG~~~eD~~~l~~~a 163 (182)
.+.+++++.... . =..||. +......+..++.+..
T Consensus 80 ~~v~~vl~~l~~~L~~g~iIId-~st~~~~~t~~~~~~l 117 (484)
T 4gwg_A 80 QAVDDFIEKLVPLLDTGDIIID-GGNSEYRDTTRRCRDL 117 (484)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEE-CSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEE-cCCCCchHHHHHHHHH
Confidence 667777665543 1 134555 4444444544444433
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00019 Score=62.60 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=61.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeec-cCCCCCeEec----------------Cccccc-cHHHHHhccCCcE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGV-TPKKGGTEHL----------------GLPVFN-SVAEAKAETKANA 119 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgV-dp~~~G~~i~----------------GvPVy~-Sv~ea~~~~~~Dv 119 (182)
+||.|+|++|..|+.+.+.+.+.+ ++|+ +.. ++...|+.+. ++.+.+ +.+++.+ .++|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~-~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv 86 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELT-ALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-EDVDI 86 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEE-EEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-TTCCE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEE-EEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-CCCCE
Confidence 689999999999999999888654 8888 555 4544554321 111211 2333222 26999
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 120 SVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++.+|.....+.+..++++|+++|=+
T Consensus 87 V~~atp~~~~~~~a~~~~~aG~~VId~ 113 (354)
T 1ys4_A 87 VFSALPSDLAKKFEPEFAKEGKLIFSN 113 (354)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEECCCchHHHHHHHHHHHCCCEEEEC
Confidence 999999999999999999999984433
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.45 E-value=3e-05 Score=62.53 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=63.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
..+||.|+|+ |.||+.+++.+.+.|.+|+ .+++...-.. ..|+.+. +.+++.+ ++|++++.+|+..+.+++.
T Consensus 18 ~~~~I~iIG~-G~mG~~la~~L~~~G~~V~--~~~r~~~~~~~~~~g~~~~-~~~~~~~--~aDvVilav~~~~~~~v~~ 91 (201)
T 2yjz_A 18 KQGVVCIFGT-GDFGKSLGLKMLQCGYSVV--FGSRNPQVSSLLPRGAEVL-CYSEAAS--RSDVIVLAVHREHYDFLAE 91 (201)
Confidence 3568999998 9999999999998888877 5555442111 1256555 7777776 7999999999987766652
Q ss_pred HH-HHcCCCEEEEeCCCCCH
Q 030169 135 EA-MEAELDLVVCITEGIPQ 153 (182)
Q Consensus 135 eA-ie~GIk~VV~iTeG~~~ 153 (182)
.. ...| +.||.++.|++.
T Consensus 92 l~~~~~~-~ivI~~~~G~~~ 110 (201)
T 2yjz_A 92 LADSLKG-RVLIDVSNNQKM 110 (201)
Confidence 11 1112 357777899974
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00054 Score=52.27 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ec-------CccccccHHHHHhccCCcEEEEeeChH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HL-------GLPVFNSVAEAKAETKANASVIYVPPP- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~-------GvPVy~Sv~ea~~~~~~DvaVdfVpp~- 127 (182)
++|+|.|++|..|+.+++.+.+.|.+|+ + ++......+ .. ++-=.++++++.+ ++|+++......
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~ 79 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVT-V-LVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRN 79 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEE-E-EESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEE-E-EEeChhhcccccCCceEEEEecCCCHHHHHHHHc--CCCEEEECccCCC
Confidence 6899999999999999999999998888 4 333221100 11 2222234556666 789999887642
Q ss_pred ----------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 128 ----------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 128 ----------av~~a~~eAie~GIk~VV~iTe 149 (182)
....+++.|.+.+++.+|.+++
T Consensus 80 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss 111 (206)
T 1hdo_A 80 DLSPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (206)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCccchHHHHHHHHHHHHHHhCCCeEEEEee
Confidence 3677788888889988876553
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00032 Score=63.52 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=68.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E---ecC-------ccccccHHHHHhcc-CCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E---HLG-------LPVFNSVAEAKAET-KANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~---i~G-------vPVy~Sv~ea~~~~-~~DvaVdfVpp 126 (182)
+||.|+|+ |.||+.++..+.+.|.+|. .+|+...-- . ..| +..+.+++|+.+.. ++|++++.||+
T Consensus 2 MkIgVIG~-G~mG~~lA~~La~~G~~V~--v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~ 78 (478)
T 1pgj_A 2 MDVGVVGL-GVMGANLALNIAEKGFKVA--VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQA 78 (478)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred CEEEEECh-HHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCC
Confidence 57999998 9999999999999998877 666542110 0 113 67888999987732 48999999999
Q ss_pred H-HHHHHHHHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 127 P-FAAAAIMEAMEA-EL-DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 127 ~-av~~a~~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
. .+.+++++.... .- ..||..++|.+ .+..++.+..+
T Consensus 79 ~~~v~~vl~~l~~~l~~g~iIId~sng~~-~~~~~l~~~l~ 118 (478)
T 1pgj_A 79 GAATDSTIEQLKKVFEKGDILVDTGNAHF-KDQGRRAQQLE 118 (478)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEECCCCCH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCh-HHHHHHHHHHH
Confidence 5 677777655432 11 34555455654 44444545443
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00026 Score=61.08 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=64.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eE---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
.++|.|+|+ |.||+.+++.+.+.|.+|+ ..++.... .+ ..|+.++ +++++.+ ++|++++.+|+....+++
T Consensus 16 ~~~I~IIG~-G~mG~alA~~L~~~G~~V~--~~~~~~~~~~~~a~~~G~~~~-~~~e~~~--~aDvVilavp~~~~~~v~ 89 (338)
T 1np3_A 16 GKKVAIIGY-GSQGHAHACNLKDSGVDVT--VGLRSGSATVAKAEAHGLKVA-DVKTAVA--AADVVMILTPDEFQGRLY 89 (338)
T ss_dssp TSCEEEECC-SHHHHHHHHHHHHTTCCEE--EECCTTCHHHHHHHHTTCEEE-CHHHHHH--TCSEEEECSCHHHHHHHH
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCcCEEE--EEECChHHHHHHHHHCCCEEc-cHHHHHh--cCCEEEEeCCcHHHHHHH
Confidence 467999998 9999999999999998888 45544311 00 1366666 8888888 799999999999998888
Q ss_pred H-HHHHc-CCCEEEEeCCCCCH
Q 030169 134 M-EAMEA-ELDLVVCITEGIPQ 153 (182)
Q Consensus 134 ~-eAie~-GIk~VV~iTeG~~~ 153 (182)
. +.... .-..+|+.+.|++.
T Consensus 90 ~~~i~~~l~~~~ivi~~~gv~~ 111 (338)
T 1np3_A 90 KEEIEPNLKKGATLAFAHGFSI 111 (338)
T ss_dssp HHHTGGGCCTTCEEEESCCHHH
T ss_pred HHHHHhhCCCCCEEEEcCCchh
Confidence 7 43332 22234444677654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00086 Score=54.69 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=60.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe------------EecCccc-------cccHHHHHhccCCc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT------------EHLGLPV-------FNSVAEAKAETKAN 118 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~------------~i~GvPV-------y~Sv~ea~~~~~~D 118 (182)
.++|+|.|++|..|+.+++.+.+.|.+++ +. +...... ...++.+ ..++.++++ ++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~-~l-~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d 79 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTF-LL-VRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVD 79 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEE-EE-CCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEE-EE-ECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc--CCC
Confidence 36799999999999999999999998888 43 3321110 0112322 234666666 799
Q ss_pred EEEEeeChH---HHHHHHHHHHHcC-CCEEEE
Q 030169 119 ASVIYVPPP---FAAAAIMEAMEAE-LDLVVC 146 (182)
Q Consensus 119 vaVdfVpp~---av~~a~~eAie~G-Ik~VV~ 146 (182)
+++...... ....+++.|.++| ++.+|.
T Consensus 80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 80 VVISTVGSLQIESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp EEEECCCGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred EEEECCcchhhhhHHHHHHHHHhcCCCceEee
Confidence 999988753 4567788888888 998874
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00022 Score=59.55 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=67.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----e------------------------cCccccccHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----H------------------------LGLPVFNSVAE 110 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----i------------------------~GvPVy~Sv~e 110 (182)
+||.|+|+ |.||+.++..+...|.+|+ .+|+...--+ . ..+....++++
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~ 81 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHGFAVT--AYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ 81 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence 68999998 9999999999999999988 5665531100 0 12456778888
Q ss_pred HHhccCCcEEEEeeChH--HHHHHHHHHHHc-CCCEEEE-eCCCCCHHHHHHH
Q 030169 111 AKAETKANASVIYVPPP--FAAAAIMEAMEA-ELDLVVC-ITEGIPQHDMVIN 159 (182)
Q Consensus 111 a~~~~~~DvaVdfVpp~--av~~a~~eAie~-GIk~VV~-iTeG~~~eD~~~l 159 (182)
+.+ ++|++|..+|+. ...++..+..+. .-..+++ .|++++..++.+.
T Consensus 82 ~~~--~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~ 132 (283)
T 4e12_A 82 AVK--DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGY 132 (283)
T ss_dssp HTT--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHH
T ss_pred Hhc--cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhh
Confidence 877 799999999987 555666555443 2233433 5899998766543
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00088 Score=55.11 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=62.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-------ecCccccccHHHHHhccCCcEEEEeeCh-----
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-------HLGLPVFNSVAEAKAETKANASVIYVPP----- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-------i~GvPVy~Sv~ea~~~~~~DvaVdfVpp----- 126 (182)
++|+|.|++|..|+.+++.+.+.|.+|+ +++......+ ..++- ..+++++++ ++|+++.+...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~--~~d~Vih~a~~~~~~~ 77 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPI--ILTRSIGNKAINDYEYRVSDYT-LEDLINQLN--DVDAVVHLAATRGSQG 77 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCCC-----CCEEEECCCC-HHHHHHHTT--TCSEEEECCCCCCSSS
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEE--EEeCCCCcccCCceEEEEcccc-HHHHHHhhc--CCCEEEEccccCCCCC
Confidence 6899999999999999999999999988 4444321111 23455 566777777 89999987543
Q ss_pred ---------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 ---------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ---------~av~~a~~eAie~GIk~VV~iT 148 (182)
..+..+++.|.+.|++.+|.++
T Consensus 78 ~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 78 KISEFHDNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp CGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2356778888889999766545
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00016 Score=63.62 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=64.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEec------------CccccccHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHL------------GLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~------------GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
.+||+|.|++|..|+.+.+.+.+.. ++++ +-.++...|+.+. ++.+ .. ++..+ ++|+++..+
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv-ai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~--~vDvVf~at 90 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVT-LMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADFS--TVDAVFCCL 90 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEE-EEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGG--GCSEEEECC
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEE-EEeCchhcCCCHHHhCchhcCccccccee-cc-hhHhc--CCCEEEEcC
Confidence 3789999999999999999888655 7998 7777655453321 1112 11 23223 699999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCCH
Q 030169 125 PPPFAAAAIMEAMEAELDLVVCITEGIPQ 153 (182)
Q Consensus 125 pp~av~~a~~eAie~GIk~VV~iTeG~~~ 153 (182)
|.....+.+..+ ++|++.|-. +.-+..
T Consensus 91 p~~~s~~~a~~~-~aG~~VId~-sa~~R~ 117 (359)
T 1xyg_A 91 PHGTTQEIIKEL-PTALKIVDL-SADFRL 117 (359)
T ss_dssp CTTTHHHHHHTS-CTTCEEEEC-SSTTTC
T ss_pred CchhHHHHHHHH-hCCCEEEEC-CccccC
Confidence 999999999999 999975554 655543
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00059 Score=58.35 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=75.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
+||.++|. |.||...++.+.+.|.+++ +.|....--+ ..|..+.+|++|+.+ .+|+++..+|-..+.+.+.+
T Consensus 4 ~kIgfIGl-G~MG~~mA~~L~~~G~~v~--v~dr~~~~~~~l~~~Ga~~a~s~~e~~~--~~dvv~~~l~~~~~v~~V~~ 78 (300)
T 3obb_A 4 KQIAFIGL-GHMGAPMATNLLKAGYLLN--VFDLVQSAVDGLVAAGASAARSARDAVQ--GADVVISMLPASQHVEGLYL 78 (300)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE--EECSSHHHHHHHHHTTCEECSSHHHHHT--TCSEEEECCSCHHHHHHHHH
T ss_pred CEEEEeee-hHHHHHHHHHHHhCCCeEE--EEcCCHHHHHHHHHcCCEEcCCHHHHHh--cCCceeecCCchHHHHHHHh
Confidence 57999998 9999999999999999888 5555431111 147889999999998 89999999987765544443
Q ss_pred H---HHcCC---CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 136 A---MEAEL---DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 136 A---ie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
. +-.+. +.+|- ++-++.++..++.+..++--+
T Consensus 79 ~~~g~~~~~~~g~iiId-~sT~~p~~~~~~a~~~~~~G~ 116 (300)
T 3obb_A 79 DDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARERGL 116 (300)
T ss_dssp SSSSSTTSCCC-CEEEE-CSCCCHHHHHHHHHHHHTTTC
T ss_pred chhhhhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCC
Confidence 2 11122 23454 666788888888888765433
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0005 Score=62.31 Aligned_cols=138 Identities=18% Similarity=0.116 Sum_probs=73.2
Q ss_pred ccccccccCCCccccccccccccccCCCCCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC------
Q 030169 22 SSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG------ 95 (182)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~------ 95 (182)
|++++..++++.-+..++-.-. ..-+.|... .+.+||.|+|. |.||..++..+.+ |.+++ ++|....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~-~~~mkIaVIGl-G~mG~~lA~~La~-G~~V~--~~D~~~~~v~~l~ 75 (432)
T 3pid_A 3 SSHHHHHHSSGLVPRGSHMASM--TGGQQMGRG-SEFMKITISGT-GYVGLSNGVLIAQ-NHEVV--ALDIVQAKVDMLN 75 (432)
T ss_dssp -----------------------------------CCCEEEEECC-SHHHHHHHHHHHT-TSEEE--EECSCHHHHHHHH
T ss_pred CccccccccCCcccccchhhhc--cCCcccccc-cCCCEEEEECc-CHHHHHHHHHHHc-CCeEE--EEecCHHHhhHHh
Confidence 3455556666665443332221 112233322 23478999998 9999999988777 98888 6655431
Q ss_pred -CeE--------------ecCccccccHHHHHhccCCcEEEEeeChH-----------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 96 -GTE--------------HLGLPVFNSVAEAKAETKANASVIYVPPP-----------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 96 -G~~--------------i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-----------av~~a~~eAie~GIk~VV~iTe 149 (182)
|.. ..++.+-.+++++.+ ++|++++.||.. .+.++++...+..-..+|+..+
T Consensus 76 ~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~--~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~S 153 (432)
T 3pid_A 76 QKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR--NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKS 153 (432)
T ss_dssp TTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT--TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECS
T ss_pred ccCCccccccHHHHHhhccCCeEEEcCHHHHHh--CCCEEEEeCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 100 013455567788887 899999999986 5666665554432233555578
Q ss_pred CCCHHHHHHHHHHhcccch
Q 030169 150 GIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 150 G~~~eD~~~l~~~ak~ipv 168 (182)
.+++.-.+++.+..++.-|
T Consensus 154 Tv~pgtt~~l~~~l~~~~v 172 (432)
T 3pid_A 154 TIPVGFTRDIKERLGIDNV 172 (432)
T ss_dssp CCCTTHHHHHHHHHTCCCE
T ss_pred CCChHHHHHHHHHHhhccE
Confidence 8999888888876654333
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00073 Score=53.53 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=61.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---------Ee--cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---------EH--LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---------~i--~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +++...... +. .++- .++.++.. ++|++|.....
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~--~~~R~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~~--~~D~vi~~ag~ 94 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPV--AMVRNEEQGPELRERGASDIVVANLE--EDFSHAFA--SIDAVVFAAGS 94 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSGGGHHHHHHTTCSEEEECCTT--SCCGGGGT--TCSEEEECCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEE--EEECChHHHHHHHhCCCceEEEcccH--HHHHHHHc--CCCEEEECCCC
Confidence 57899999999999999999999999888 333332110 11 1232 45566666 79999988754
Q ss_pred H--------------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 P--------------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ~--------------av~~a~~eAie~GIk~VV~iTe 149 (182)
. .+..+++.|.+.|++.+|.+++
T Consensus 95 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 131 (236)
T 3e8x_A 95 GPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSS 131 (236)
T ss_dssp CTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEec
Confidence 2 3567788888889988887664
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.23 E-value=7.9e-05 Score=65.92 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=63.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-C--ceEEeeccCCCCCeE---------------ecCccccccHHHHHhccCCcEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-T--KMVVGGVTPKKGGTE---------------HLGLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~--~IV~AgVdp~~~G~~---------------i~GvPVy~Sv~ea~~~~~~Dva 120 (182)
+||+|+|+ |.+|+.+++.+.+.| . +|++++-++.+.... ..++--.+++++++++.++|++
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV 80 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV 80 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence 47999999 999999999998877 2 666444443321100 0112224557787775569999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEE
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~VV 145 (182)
|..+|+.....+++.|+++|++.+-
T Consensus 81 in~ag~~~~~~v~~a~l~~g~~vvD 105 (405)
T 4ina_A 81 LNIALPYQDLTIMEACLRTGVPYLD 105 (405)
T ss_dssp EECSCGGGHHHHHHHHHHHTCCEEE
T ss_pred EECCCcccChHHHHHHHHhCCCEEE
Confidence 9999999999999999999999775
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0005 Score=59.94 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=64.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEe--c--Ccccccc-HHHHHhccCCcEEEEeeChHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEH--L--GLPVFNS-VAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i--~--GvPVy~S-v~ea~~~~~~DvaVdfVpp~av 129 (182)
.+||+|.|++|+.|+.+.+.+.+.+ ++++ +..++...|+.+ . .+.+.+. .++ .+ ++|+++..+|....
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv-~i~s~~~~g~~~~~~g~~i~~~~~~~~~-~~--~~DvV~~a~g~~~s 81 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLH-LLASAESAGQRMGFAESSLRVGDVDSFD-FS--SVGLAFFAAAAEVS 81 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEE-EEECTTTTTCEEEETTEEEECEEGGGCC-GG--GCSEEEECSCHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEE-EEecCCCCCCccccCCcceEEecCCHHH-hc--CCCEEEEcCCcHHH
Confidence 3689999999999999999888543 7787 655555545432 1 2333221 112 23 69999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCC
Q 030169 130 AAAIMEAMEAELDLVVCITEGIP 152 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~ 152 (182)
.+.+..++++|++.|.+ +.-+.
T Consensus 82 ~~~a~~~~~aG~kvId~-Sa~~r 103 (340)
T 2hjs_A 82 RAHAERARAAGCSVIDL-SGALE 103 (340)
T ss_dssp HHHHHHHHHTTCEEEET-TCTTT
T ss_pred HHHHHHHHHCCCEEEEe-CCCCC
Confidence 99999999999985543 65443
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0006 Score=58.87 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=64.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-------CceEEeeccCCCC---------------------CeEe-cCccccccHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-------TKMVVGGVTPKKG---------------------GTEH-LGLPVFNSVA 109 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-------~~IV~AgVdp~~~---------------------G~~i-~GvPVy~Sv~ 109 (182)
+||.|+|+ |.||..++..+.+.| .+|+ .+++... |... .++.+.++++
T Consensus 22 ~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~--~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 98 (375)
T 1yj8_A 22 LKISILGS-GNWASAISKVVGTNAKNNYLFENEVR--MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLA 98 (375)
T ss_dssp BCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEE--EECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTH
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEE--EEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHH
Confidence 58999998 999999999888777 6777 4544332 0000 1355667788
Q ss_pred HHHhccCCcEEEEeeChHHHHHHHHHHHHc---CC---CEEEEeCCCCCH
Q 030169 110 EAKAETKANASVIYVPPPFAAAAIMEAMEA---EL---DLVVCITEGIPQ 153 (182)
Q Consensus 110 ea~~~~~~DvaVdfVpp~av~~a~~eAie~---GI---k~VV~iTeG~~~ 153 (182)
|+.+ ++|++++.||+..+.+++++.... .+ ..|+.++.|++.
T Consensus 99 ea~~--~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~ 146 (375)
T 1yj8_A 99 SVIN--DADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIV 146 (375)
T ss_dssp HHHT--TCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred HHHc--CCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence 8877 799999999999888888765430 22 256666779876
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00067 Score=57.47 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=63.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-------CceEEeeccCCCC------CeEe----------------cCccccccHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-------TKMVVGGVTPKKG------GTEH----------------LGLPVFNSVA 109 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-------~~IV~AgVdp~~~------G~~i----------------~GvPVy~Sv~ 109 (182)
+||.|+|+ |.||..++..+.+.| .+|. .+++... .+.+ .++.+.++++
T Consensus 9 mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~--~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
T 1x0v_A 9 KKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVT--MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV 85 (354)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEE--EECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEE--EEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence 68999998 999999999988777 6666 5554432 0000 1244557788
Q ss_pred HHHhccCCcEEEEeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCC
Q 030169 110 EAKAETKANASVIYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIP 152 (182)
Q Consensus 110 ea~~~~~~DvaVdfVpp~av~~a~~eAie~-G-Ik~VV~iTeG~~ 152 (182)
++.+ ++|++++.+|+....+++++.... + =..|+.++.|++
T Consensus 86 ~~~~--~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 86 QAAE--DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp HHHT--TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred HHHc--CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 8877 799999999999888888765432 1 135677788887
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0011 Score=51.30 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=57.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e-cCcccc-ccHH----HHHhccCCcEEEEeeCh-----
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H-LGLPVF-NSVA----EAKAETKANASVIYVPP----- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i-~GvPVy-~Sv~----ea~~~~~~DvaVdfVpp----- 126 (182)
|||+|.|++|..|+.+++.+.+.|.+|+ +++......+ . .++.++ -++. ++.+ ++|++|.....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~--~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~--~~d~vi~~ag~~~~~~ 76 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVT--AIVRNAGKITQTHKDINILQKDIFDLTLSDLS--DQNVVVDAYGISPDEA 76 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCSHHHHHHCSSSEEEECCGGGCCHHHHT--TCSEEEECCCSSTTTT
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEE--EEEcCchhhhhccCCCeEEeccccChhhhhhc--CCCEEEECCcCCcccc
Confidence 5899999999999999999999999988 4443321100 0 112111 1121 4455 79999988755
Q ss_pred ----HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 ----PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ----~av~~a~~eAie~GIk~VV~iTe 149 (182)
..+..+++.|.++|++.+|.+++
T Consensus 77 ~~~~~~~~~l~~a~~~~~~~~~v~~SS 103 (221)
T 3ew7_A 77 EKHVTSLDHLISVLNGTVSPRLLVVGG 103 (221)
T ss_dssp TSHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred chHHHHHHHHHHHHHhcCCceEEEEec
Confidence 34566777777777887776654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00085 Score=50.73 Aligned_cols=99 Identities=13% Similarity=0.051 Sum_probs=60.8
Q ss_pred CeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC--CCCeE--ecCcccc-cc---HHHHHh--ccCCcEE
Q 030169 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK--KGGTE--HLGLPVF-NS---VAEAKA--ETKANAS 120 (182)
Q Consensus 51 ~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~--~~G~~--i~GvPVy-~S---v~ea~~--~~~~Dva 120 (182)
|+... +..+|+|+|+ |.+|+.+++.+.+.|.+++ .+++. +...- ..|..++ .+ .+.+.+ -.++|++
T Consensus 13 ~~~~~-~~~~v~IiG~-G~iG~~la~~L~~~g~~V~--vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 13 MSKKQ-KSKYIVIFGC-GRLGSLIANLASSSGHSVV--VVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp ----C-CCCEEEEECC-SHHHHHHHHHHHHTTCEEE--EEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred hhccc-CCCcEEEECC-CHHHHHHHHHHHhCCCeEE--EEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEE
Confidence 44333 3467999998 9999999999999998888 45443 21100 1233332 22 222211 1268999
Q ss_pred EEeeChHHHHHHHHHHHH--cCCCEEEEeCCCCCH
Q 030169 121 VIYVPPPFAAAAIMEAME--AELDLVVCITEGIPQ 153 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie--~GIk~VV~iTeG~~~ 153 (182)
++.++.......+.++.. .+...+++.+.+...
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~ 123 (155)
T 2g1u_A 89 FAFTNDDSTNFFISMNARYMFNVENVIARVYDPEK 123 (155)
T ss_dssp EECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGGG
T ss_pred EEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 999998777666655554 577777776665543
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00057 Score=60.70 Aligned_cols=97 Identities=19% Similarity=0.145 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee---------------------cC-ccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH---------------------LG-LPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i---------------------~G-vPVy~Sv~ea~~~~ 115 (182)
+||.|+|+ |.||..++..+.+.|.+++ ++|....-- .+ .| +....+++++.+
T Consensus 1 mkI~VIG~-G~vG~~~A~~la~~G~~V~--~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~-- 75 (436)
T 1mv8_A 1 MRISIFGL-GYVGAVCAGCLSARGHEVI--GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL-- 75 (436)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE--EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc--
Confidence 47999997 9999999999999998887 666532100 00 12 445567777777
Q ss_pred CCcEEEEeeChHH----------HHHHHHHHHHc-C----CCEEEEeCCCCCHHH-HHHHHH
Q 030169 116 KANASVIYVPPPF----------AAAAIMEAMEA-E----LDLVVCITEGIPQHD-MVINFT 161 (182)
Q Consensus 116 ~~DvaVdfVpp~a----------v~~a~~eAie~-G----Ik~VV~iTeG~~~eD-~~~l~~ 161 (182)
++|++++.||... +.+++++.... . =..||. ++.++... .+.+.+
T Consensus 76 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~ 136 (436)
T 1mv8_A 76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIP 136 (436)
T ss_dssp TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHH
T ss_pred cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHH
Confidence 7999999998655 67776655442 2 234444 54565544 344433
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0001 Score=59.41 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=63.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM- 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~- 134 (182)
+||.|+|+ |.||+.+++.+.+.|.+|+ .+++..... . ..|+.+. +.+++.+ ++|++++.+|+....+++.
T Consensus 29 ~~I~iiG~-G~~G~~la~~l~~~g~~V~--~~~r~~~~~~~~~~~g~~~~-~~~~~~~--~~DvVi~av~~~~~~~v~~l 102 (215)
T 2vns_A 29 PKVGILGS-GDFARSLATRLVGSGFKVV--VGSRNPKRTARLFPSAAQVT-FQEEAVS--SPEVIFVAVFREHYSSLCSL 102 (215)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCEE--EEESSHHHHHHHSBTTSEEE-EHHHHTT--SCSEEEECSCGGGSGGGGGG
T ss_pred CEEEEEcc-CHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHcCCcee-cHHHHHh--CCCEEEECCChHHHHHHHHH
Confidence 67999995 9999999999998898887 455543110 0 1256555 7778777 7999999999976555543
Q ss_pred -HHHHcCCCEEEEeCCCCCHHHH
Q 030169 135 -EAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 135 -eAie~GIk~VV~iTeG~~~eD~ 156 (182)
..+ .-+.|+.++.|++.+.+
T Consensus 103 ~~~~--~~~~vv~~s~g~~~~~l 123 (215)
T 2vns_A 103 SDQL--AGKILVDVSNPTEQEHL 123 (215)
T ss_dssp HHHH--TTCEEEECCCCCHHHHH
T ss_pred HHhc--CCCEEEEeCCCcccccc
Confidence 122 23467777999987653
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00026 Score=60.95 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=67.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH-H
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM-E 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~-e 135 (182)
.++|.|+|+ |+||+.+++.+..+|++|+ +.|+.....+ + .+.+++|+.+ ++|++++.+|... ...++. +
T Consensus 144 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~--~~d~~~~~~~---~-~~~~l~ell~--~aDvV~l~~p~~~~t~~li~~~ 214 (311)
T 2cuk_A 144 GLTLGLVGM-GRIGQAVAKRALAFGMRVV--YHARTPKPLP---Y-PFLSLEELLK--EADVVSLHTPLTPETHRLLNRE 214 (311)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCSSS---S-CBCCHHHHHH--HCSEEEECCCCCTTTTTCBCHH
T ss_pred CCEEEEEEE-CHHHHHHHHHHHHCCCEEE--EECCCCcccc---c-ccCCHHHHHh--hCCEEEEeCCCChHHHhhcCHH
Confidence 467999998 9999999999999999988 7887653322 3 3678999888 7999999999874 444442 2
Q ss_pred HHHcCCC---EEEEeCCCCCHHHHHHHHHHhc
Q 030169 136 AMEAELD---LVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 136 Aie~GIk---~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.++ .++ .+|+++.| +.-|...|.++.+
T Consensus 215 ~l~-~mk~ga~lin~srg-~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 215 RLF-AMKRGAILLNTARG-ALVDTEALVEALR 244 (311)
T ss_dssp HHT-TSCTTCEEEECSCG-GGBCHHHHHHHHT
T ss_pred HHh-hCCCCcEEEECCCC-CccCHHHHHHHHh
Confidence 332 222 46775665 4445555555554
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00022 Score=62.21 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCeEe---cCccccccHHHHHhccCCcEEEEeeChHH-HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGTEH---LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~~i---~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a 132 (182)
.++|.|+|+ |+||+.+++.+. .+|++|+ ++|+.....+. .|+....+++++++ ++|++++.+|... ...+
T Consensus 163 g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~--~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVil~vp~~~~t~~l 237 (348)
T 2w2k_A 163 GHVLGAVGL-GAIQKEIARKAVHGLGMKLV--YYDVAPADAETEKALGAERVDSLEELAR--RSDCVSVSVPYMKLTHHL 237 (348)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCCEEE--EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCSGGGTTC
T ss_pred CCEEEEEEE-CHHHHHHHHHHHHhcCCEEE--EECCCCcchhhHhhcCcEEeCCHHHHhc--cCCEEEEeCCCChHHHHH
Confidence 357999998 999999999999 9999988 77776532111 25555568999888 7999999999864 3333
Q ss_pred HH-HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhcc
Q 030169 133 IM-EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 133 ~~-eAie~-GIk-~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+. +.++. +-. .+++++.| +.-|...|.++.++
T Consensus 238 i~~~~l~~mk~gailin~srg-~~vd~~aL~~aL~~ 272 (348)
T 2w2k_A 238 IDEAFFAAMKPGSRIVNTARG-PVISQDALIAALKS 272 (348)
T ss_dssp BCHHHHHHSCTTEEEEECSCG-GGBCHHHHHHHHHT
T ss_pred hhHHHHhcCCCCCEEEECCCC-chhCHHHHHHHHHh
Confidence 31 22322 222 45665555 33444444444433
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=62.31 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=64.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCC-CC------------------Ce-------E--ec--Cccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPK-KG------------------GT-------E--HL--GLPVFN- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~-~~------------------G~-------~--i~--GvPVy~- 106 (182)
.||.|.|+ |++|+.+++.+.+. +++|+ +-.||. .. |. . ++ .+++|.
T Consensus 4 ikVgI~G~-GrIGr~l~R~l~~~p~vevv-aI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~ 81 (337)
T 3e5r_O 4 IKIGINGF-GRIGRLVARVALQSEDVELV-AVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI 81 (337)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEE-EEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECC
T ss_pred eEEEEECc-CHHHHHHHHHHhCCCCeEEE-EEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEec
Confidence 58999999 99999999988865 69999 766651 10 10 0 01 234564
Q ss_pred -cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 -Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++++ ...++|++++.+|.....+.+..++++|.+.||+
T Consensus 82 ~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVI 123 (337)
T 3e5r_O 82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVI 123 (337)
T ss_dssp SCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred CChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEE
Confidence 566653 2237999999999999999999999999998877
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0018 Score=52.93 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=60.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-----------EecCccc-------cccHHHHHhccCCcE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-----------EHLGLPV-------FNSVAEAKAETKANA 119 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-----------~i~GvPV-------y~Sv~ea~~~~~~Dv 119 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +. +...... ...++.+ ..++.++.+ ++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~-~~-~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~--~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTY-VL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEE-EE-CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEE-EE-ECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHh--CCCE
Confidence 46799999999999999999999998888 43 3322110 0012322 234666666 7999
Q ss_pred EEEeeCh-------HHHHHHHHHHHHcC-CCEEEE
Q 030169 120 SVIYVPP-------PFAAAAIMEAMEAE-LDLVVC 146 (182)
Q Consensus 120 aVdfVpp-------~av~~a~~eAie~G-Ik~VV~ 146 (182)
++..... .....+++.|.++| ++.+|.
T Consensus 80 vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 80 VISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp EEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred EEECCccccchhhHHHHHHHHHHHHhcCCCceEEe
Confidence 9988754 35677888888899 998874
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0018 Score=54.38 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=56.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC---------CeEecC--------c-cccccHHHHHhccCCcEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG---------GTEHLG--------L-PVFNSVAEAKAETKANAS 120 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~---------G~~i~G--------v-PVy~Sv~ea~~~~~~Dva 120 (182)
+||.|+|+ |.||..++..+.+.|.+|+ .+++... +..+.+ + .++.+++++.+ ++|++
T Consensus 5 mki~iiG~-G~~G~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~v 79 (359)
T 1bg6_A 5 KTYAVLGL-GNGGHAFAAYLALKGQSVL--AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK--DADVI 79 (359)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT--TCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCEEE--EEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHh--cCCEE
Confidence 78999998 9999999999988888876 5665321 111111 1 36778888877 79999
Q ss_pred EEeeChHHHHHHHHHHHH
Q 030169 121 VIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie 138 (182)
++.+|+....+++++...
T Consensus 80 i~~v~~~~~~~~~~~l~~ 97 (359)
T 1bg6_A 80 LIVVPAIHHASIAANIAS 97 (359)
T ss_dssp EECSCGGGHHHHHHHHGG
T ss_pred EEeCCchHHHHHHHHHHH
Confidence 999999999888876644
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00058 Score=59.40 Aligned_cols=90 Identities=17% Similarity=0.033 Sum_probs=64.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCCeEe--c--CccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGGTEH--L--GLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G~~i--~--GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+||+|.|++|..|+.+.+.+.+. +.+++ +-.++...|+.+ . .+.+.+.-.+..+ ++|+++..+|.....
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv-~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~--~vDvVf~a~g~~~s~ 79 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELF-LLASERSEGKTYRFNGKTVRVQNVEEFDWS--QVHIALFSAGGELSA 79 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEE-EEECTTTTTCEEEETTEEEEEEEGGGCCGG--GCSEEEECSCHHHHH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEE-EEECCCCCCCceeecCceeEEecCChHHhc--CCCEEEECCCchHHH
Confidence 478999999999999999988876 37888 666655555432 1 2333221111122 699999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCC
Q 030169 131 AAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~ 151 (182)
+.+..++++|++.|.. +.-+
T Consensus 80 ~~a~~~~~~G~~vId~-s~~~ 99 (336)
T 2r00_A 80 KWAPIAAEAGVVVIDN-TSHF 99 (336)
T ss_dssp HHHHHHHHTTCEEEEC-SSTT
T ss_pred HHHHHHHHcCCEEEEc-CCcc
Confidence 9999999999976654 5433
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.002 Score=52.27 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=61.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee--c---Cc----c-ccccHHHHHhccCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH--L---GL----P-VFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i--~---Gv----P-Vy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
+||.|+|+ |.||..++..+.+.|.+|. .+++...-- .+ . |. . ..++ .++.+ ++|++++.+|+.
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~--~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~d~vi~~v~~~ 74 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGHEVQ--GWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLA--TSDLLLVTLKAW 74 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHH--TCSEEEECSCGG
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCEE--EEEcCccceeeEEEEcCCCceeeeeeeecC-ccccC--CCCEEEEEecHH
Confidence 47999999 9999999999999898887 555543211 11 1 11 1 1233 34555 799999999999
Q ss_pred HHHHHHHHHHHc-C-CCEEEEeCCCCCHH
Q 030169 128 FAAAAIMEAMEA-E-LDLVVCITEGIPQH 154 (182)
Q Consensus 128 av~~a~~eAie~-G-Ik~VV~iTeG~~~e 154 (182)
.+.+++++.... + =..|+.++.|+...
T Consensus 75 ~~~~v~~~l~~~l~~~~~vv~~~~g~~~~ 103 (291)
T 1ks9_A 75 QVSDAVKSLASTLPVTTPILLIHNGMGTI 103 (291)
T ss_dssp GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred hHHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence 988888765543 1 12455558898653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00086 Score=60.23 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=65.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe-Ee---------------------cCccccccHHHHHhc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT-EH---------------------LGLPVFNSVAEAKAE 114 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~-~i---------------------~GvPVy~Sv~ea~~~ 114 (182)
+||.|+|+ |.||..++..+.+. |.+++ ++|....-- .+ .++....+++++.+
T Consensus 6 mkI~VIG~-G~mG~~lA~~La~~g~G~~V~--~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~- 81 (467)
T 2q3e_A 6 KKICCIGA-GYVGGPTCSVIAHMCPEIRVT--VVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIK- 81 (467)
T ss_dssp CEEEEECC-STTHHHHHHHHHHHCTTSEEE--EECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH-
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCCCEEE--EEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHh-
Confidence 68999998 99999999999988 78877 666542100 00 13455567777777
Q ss_pred cCCcEEEEeeChHH---------------HHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 115 TKANASVIYVPPPF---------------AAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 115 ~~~DvaVdfVpp~a---------------v~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
++|++++.||... +.+++++..+. .-..+|+.++.++....+++.+..+
T Consensus 82 -~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~ 146 (467)
T 2q3e_A 82 -EADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFD 146 (467)
T ss_dssp -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHH
T ss_pred -cCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHH
Confidence 7999999987533 34555554443 2223444455666666666655543
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00036 Score=60.44 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccc---ccHHHHHhccCCcEEEEeeChH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVF---NSVAEAKAETKANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy---~Sv~ea~~~~~~DvaVdfVpp~-av~~a~ 133 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ +.|+.... ..++.-+ .+++|+.+ +.|++++.+|.. .+..++
T Consensus 139 g~tvGIiG~-G~IG~~vA~~l~~~G~~V~--~~dr~~~~--~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li 211 (315)
T 3pp8_A 139 EFSVGIMGA-GVLGAKVAESLQAWGFPLR--CWSRSRKS--WPGVESYVGREELRAFLN--QTRVLINLLPNTAQTVGII 211 (315)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTTCCEE--EEESSCCC--CTTCEEEESHHHHHHHHH--TCSEEEECCCCCGGGTTCB
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE--EEcCCchh--hhhhhhhcccCCHHHHHh--hCCEEEEecCCchhhhhhc
Confidence 467999999 9999999999999999999 77765421 2333333 57889888 899999999944 445555
Q ss_pred H-HHHHc-CC-CEEEEeCCCCCHHHHHHHHHH
Q 030169 134 M-EAMEA-EL-DLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 134 ~-eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ 162 (182)
. +.++. +- ..+|+++.|=.+.+...+.++
T Consensus 212 ~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL 243 (315)
T 3pp8_A 212 NSELLDQLPDGAYVLNLARGVHVQEADLLAAL 243 (315)
T ss_dssp SHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred cHHHHhhCCCCCEEEECCCChhhhHHHHHHHH
Confidence 3 33332 22 246775555444444444443
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0032 Score=45.36 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=59.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee---cCcccc-cc---HHHHHhc--cCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH---LGLPVF-NS---VAEAKAE--TKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i---~GvPVy-~S---v~ea~~~--~~~DvaVdfVpp~ 127 (182)
.++|+|+|+ |.+|+.+++.+.+.|.+++ .+++....- .. .+++++ .+ .+...+. .++|++++.+|..
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~--~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 80 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIV--LIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE 80 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEE--EEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEE--EEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence 468999998 9999999999999898887 555542110 01 144432 22 2222211 2789999999987
Q ss_pred HHHHHH-HHHHHcCCCEEEEeCCCCCHH
Q 030169 128 FAAAAI-MEAMEAELDLVVCITEGIPQH 154 (182)
Q Consensus 128 av~~a~-~eAie~GIk~VV~iTeG~~~e 154 (182)
.....+ ..+-+.+.+.+++.+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 108 (140)
T 1lss_A 81 EVNLMSSLLAKSYGINKTIARISEIEYK 108 (140)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTTHH
T ss_pred hHHHHHHHHHHHcCCCEEEEEecCHhHH
Confidence 665544 444455776777767765443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00025 Score=62.16 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=68.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~- 133 (182)
.++|.|+|+ |+||+.+++.+..+|++|+ +.|+..... ...|+..+.+++|+.+ +.|++++.+|.. ....++
T Consensus 168 g~tvGIIG~-G~IG~~vA~~l~~~G~~V~--~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~ 242 (347)
T 1mx3_A 168 GETLGIIGL-GRVGQAVALRAKAFGFNVL--FYDPYLSDGVERALGLQRVSTLQDLLF--HSDCVTLHCGLNEHNHHLIN 242 (347)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE--EECTTSCTTHHHHHTCEECSSHHHHHH--HCSEEEECCCCCTTCTTSBS
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEE--EECCCcchhhHhhcCCeecCCHHHHHh--cCCEEEEcCCCCHHHHHHhH
Confidence 457999998 9999999999999999988 677764321 1125555678999988 799999999975 334444
Q ss_pred HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 134 MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 134 ~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
++.++. +- ..+|+++.|=.+ |...|.++.+
T Consensus 243 ~~~l~~mk~gailIN~arg~~v-d~~aL~~aL~ 274 (347)
T 1mx3_A 243 DFTVKQMRQGAFLVNTARGGLV-DEKALAQALK 274 (347)
T ss_dssp HHHHTTSCTTEEEEECSCTTSB-CHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEECCCChHH-hHHHHHHHHH
Confidence 333433 22 246776666444 4444544443
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0017 Score=53.31 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=61.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeCh-----------
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP----------- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp----------- 126 (182)
.++|+|.|++|..|+.+++.+.+.|.+++ + ++....+ ++-=..++++++++.++|++|.....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~-~-~~r~~~~----D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~ 76 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVEL-V-LRTRDEL----NLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEE-E-CCCTTTC----CTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEE-E-EecCccC----CccCHHHHHHHHHhcCCCEEEEcCeecCCcchhhhCH
Confidence 36899999999999999999999898888 4 4443322 23233556777765579999987532
Q ss_pred --------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 --------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 --------~av~~a~~eAie~GIk~VV~iTe 149 (182)
.....+++.|.+.|++.+|.+++
T Consensus 77 ~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 107 (321)
T 1e6u_A 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 12346677788889977776554
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0012 Score=54.83 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=59.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeCh-------
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPP------- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp------- 126 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ +++....... ..++-=..+++++++ ++|+++-....
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~--~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~A~~~~~~~~~ 94 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQGRTVR--GFDLRPSGTGGEEVVGSLEDGQALSDAIM--GVSAVLHLGAFMSWAPAD 94 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCEE--EEESSCCSSCCSEEESCTTCHHHHHHHHT--TCSEEEECCCCCCSSGGG
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCEEE--EEeCCCCCCCccEEecCcCCHHHHHHHHh--CCCEEEECCcccCcchhh
Confidence 46799999999999999999999999998 4443332111 123333344666666 89999876432
Q ss_pred ---------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 ---------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ---------~av~~a~~eAie~GIk~VV~iTe 149 (182)
..+..+++.|.+.|++.+|.+++
T Consensus 95 ~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 95 RDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 23456788888899988776554
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0033 Score=52.97 Aligned_cols=91 Identities=10% Similarity=0.081 Sum_probs=64.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC------CCeEe---------cCccccccHHHHHhccCCcEEEEe
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK------GGTEH---------LGLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~------~G~~i---------~GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
+||+|+|+ |.||..+...+.+.|.+|. .+++.. .|-.+ ..+.++++.++ .+ ++|++++.
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~~V~--~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~--~~D~vila 76 (312)
T 3hn2_A 3 LRIAIVGA-GALGLYYGALLQRSGEDVH--FLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IG--PMDLVLVG 76 (312)
T ss_dssp -CEEEECC-STTHHHHHHHHHHTSCCEE--EECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHH-HC--CCSEEEEC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCeEE--EEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cC--CCCEEEEe
Confidence 68999999 9999999999998887777 555443 11111 12445667765 34 69999999
Q ss_pred eChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030169 124 VPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 155 (182)
Q Consensus 124 Vpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~eD 155 (182)
||+....+++++.... + =..||.+.-|+..++
T Consensus 77 vk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~ 110 (312)
T 3hn2_A 77 LKTFANSRYEELIRPLVEEGTQILTLQNGLGNEE 110 (312)
T ss_dssp CCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHH
T ss_pred cCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHH
Confidence 9999998888776543 2 235777799997543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0014 Score=54.09 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=59.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-------ecCcccc-------ccHHHHHhccCCcEEEEee
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-------HLGLPVF-------NSVAEAKAETKANASVIYV 124 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-------i~GvPVy-------~Sv~ea~~~~~~DvaVdfV 124 (182)
++|+|.|++|..|+.+++.+.+.|.+|+ + ++....... ..++.++ +++.++++ ++|+++...
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~-~-l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~--~~d~vi~~a 87 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTY-V-FTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK--KVDVVISAL 87 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEE-E-EECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEE-E-EECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc--CCCEEEECC
Confidence 3799999999999999999999998888 4 333221110 1233332 33566666 799999988
Q ss_pred Ch---HHHHHHHHHHHHcC-CCEEEE
Q 030169 125 PP---PFAAAAIMEAMEAE-LDLVVC 146 (182)
Q Consensus 125 pp---~av~~a~~eAie~G-Ik~VV~ 146 (182)
+. .....+++.|.++| ++.+|.
T Consensus 88 ~~~~~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 88 AFPQILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp CGGGSTTHHHHHHHHHHHCCCCEEEC
T ss_pred chhhhHHHHHHHHHHHhcCCCCEEEe
Confidence 75 34667788888888 998874
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0033 Score=51.12 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=59.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC-CCe------------EecCccc-------cccHHHHHhccCCc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK-GGT------------EHLGLPV-------FNSVAEAKAETKAN 118 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~-~G~------------~i~GvPV-------y~Sv~ea~~~~~~D 118 (182)
++|+|.|++|..|+.+++.+.+.|.+|+ +.+ ... .+. ...++.+ .+++.++++ ++|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~-~~~-R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d 78 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKAGNPTY-ALV-RKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK--QVD 78 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHHTCCEE-EEE-CCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCS
T ss_pred cEEEEECCCchHHHHHHHHHHhCCCcEE-EEE-CCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh--CCC
Confidence 5799999999999999999999998888 533 221 000 0012222 233556666 799
Q ss_pred EEEEeeCh---HHHHHHHHHHHHcC-CCEEEE
Q 030169 119 ASVIYVPP---PFAAAAIMEAMEAE-LDLVVC 146 (182)
Q Consensus 119 vaVdfVpp---~av~~a~~eAie~G-Ik~VV~ 146 (182)
+++..... .....+++.|.++| ++.+|.
T Consensus 79 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~ 110 (307)
T 2gas_A 79 IVICAAGRLLIEDQVKIIKAIKEAGNVKKFFP 110 (307)
T ss_dssp EEEECSSSSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred EEEECCcccccccHHHHHHHHHhcCCceEEee
Confidence 99988764 45677888888888 998874
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0006 Score=61.01 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=69.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-ME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~-~e 135 (182)
.+++.|+|. |++|+.+++.+..+|++|+ +.||.... ...++..+.+++|+.+ ++|++++.+|... +..++ ++
T Consensus 145 gktlGiIGl-G~IG~~vA~~l~~~G~~V~--~~d~~~~~-~~~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~ 218 (404)
T 1sc6_A 145 GKKLGIIGY-GHIGTQLGILAESLGMYVY--FYDIENKL-PLGNATQVQHLSDLLN--MSDVVSLHVPENPSTKNMMGAK 218 (404)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCC-CCTTCEECSCHHHHHH--HCSEEEECCCSSTTTTTCBCHH
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEE--EEcCCchh-ccCCceecCCHHHHHh--cCCEEEEccCCChHHHHHhhHH
Confidence 457999999 9999999999999999999 88886532 2334556678999998 7999999999863 33333 22
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 136 AMEA-EL-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 136 Aie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.++. +- ..+|+++.|=. -|...|.++.+.
T Consensus 219 ~l~~mk~ga~lIN~aRg~~-vd~~aL~~aL~~ 249 (404)
T 1sc6_A 219 EISLMKPGSLLINASRGTV-VDIPALADALAS 249 (404)
T ss_dssp HHHHSCTTEEEEECSCSSS-BCHHHHHHHHHT
T ss_pred HHhhcCCCeEEEECCCChH-HhHHHHHHHHHc
Confidence 3322 22 24667566644 444555554443
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00028 Score=62.16 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=64.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC------CceEEeeccCCCCCeEec----------CccccccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG------TKMVVGGVTPKKGGTEHL----------GLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g------~~IV~AgVdp~~~G~~i~----------GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
+||+|+|+||..|+.+.+.+.+.+ .+++ +..+....|+.+. .+.+.+.-.+... ++|+++.
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~-~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~--~~DvVf~ 86 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIG-ALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLG--GHDAVFL 86 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEE-EEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHT--TCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEE-EEECCCcCCCchhhhcccccccceeeeccCCHHHhc--CCCEEEE
Confidence 689999999999999999888644 6788 6655544443221 2233221122334 7999999
Q ss_pred eeChHHHHHHHHHHHHcCCCEEEEeCCCCCH
Q 030169 123 YVPPPFAAAAIMEAMEAELDLVVCITEGIPQ 153 (182)
Q Consensus 123 fVpp~av~~a~~eAie~GIk~VV~iTeG~~~ 153 (182)
..|.....+.+..+ ++|++.|.+ +.-+..
T Consensus 87 alg~~~s~~~~~~~-~~G~~vIDl-Sa~~R~ 115 (352)
T 2nqt_A 87 ALPHGHSAVLAQQL-SPETLIIDC-GADFRL 115 (352)
T ss_dssp CCTTSCCHHHHHHS-CTTSEEEEC-SSTTTC
T ss_pred CCCCcchHHHHHHH-hCCCEEEEE-CCCccC
Confidence 99999999999999 999876665 766654
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0029 Score=52.10 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=60.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC-CCe-----------EecCccc-------cccHHHHHhccCCc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK-GGT-----------EHLGLPV-------FNSVAEAKAETKAN 118 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~-~G~-----------~i~GvPV-------y~Sv~ea~~~~~~D 118 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +. +... .+. ...++.+ .+++.++++ ++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~-~~-~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~--~~d 79 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTF-IY-ARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLK--QVD 79 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEE-EE-ECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCS
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEE-EE-ECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHc--CCC
Confidence 36799999999999999999999998888 43 3322 100 0012222 234666666 799
Q ss_pred EEEEeeCh---HHHHHHHHHHHHcC-CCEEEE
Q 030169 119 ASVIYVPP---PFAAAAIMEAMEAE-LDLVVC 146 (182)
Q Consensus 119 vaVdfVpp---~av~~a~~eAie~G-Ik~VV~ 146 (182)
+++..... .....+++.|.++| ++.+|.
T Consensus 80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 80 IVISALPFPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp EEEECCCGGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred EEEECCCccchhhHHHHHHHHHHhCCccEEec
Confidence 99988775 45677888888899 998874
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00028 Score=61.21 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~- 133 (182)
.++|.|+|+ |+||+.+++.+...|.+|+ ++|+...... ..|+.. .+++++++ ++|++++.+|.. ....++
T Consensus 146 g~~vgIIG~-G~iG~~vA~~l~~~G~~V~--~~d~~~~~~~~~~~g~~~-~~l~e~l~--~aDiVil~vp~~~~t~~~i~ 219 (333)
T 2d0i_A 146 GKKVGILGM-GAIGKAIARRLIPFGVKLY--YWSRHRKVNVEKELKARY-MDIDELLE--KSDIVILALPLTRDTYHIIN 219 (333)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTCEEE--EECSSCCHHHHHHHTEEE-CCHHHHHH--HCSEEEECCCCCTTTTTSBC
T ss_pred cCEEEEEcc-CHHHHHHHHHHHHCCCEEE--EECCCcchhhhhhcCcee-cCHHHHHh--hCCEEEEcCCCChHHHHHhC
Confidence 467999998 9999999999999999988 7777653211 124443 47888887 799999999997 333332
Q ss_pred ---HHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 134 ---MEAMEAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 134 ---~eAie~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
...++.| .+++++.|-...+......+
T Consensus 220 ~~~~~~mk~g--ilin~srg~~vd~~aL~~aL 249 (333)
T 2d0i_A 220 EERVKKLEGK--YLVNIGRGALVDEKAVTEAI 249 (333)
T ss_dssp HHHHHHTBTC--EEEECSCGGGBCHHHHHHHH
T ss_pred HHHHhhCCCC--EEEECCCCcccCHHHHHHHH
Confidence 2344556 77886666555443333333
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00056 Score=61.35 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=64.0
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhC----------CceEEeeccCCCCCe-------------------Ee-cCccc
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYG----------TKMVVGGVTPKKGGT-------------------EH-LGLPV 104 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g----------~~IV~AgVdp~~~G~-------------------~i-~GvPV 104 (182)
.++..||.|.|+ |.+|+++++.+.+.| ..++ +-++...++ .. ..+.+
T Consensus 31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw--~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~ 107 (391)
T 4fgw_A 31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMW--VFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA 107 (391)
T ss_dssp --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEE--CCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE
T ss_pred cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEE--EcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE
Confidence 455679999999 999999999877543 2344 333221110 00 14567
Q ss_pred cccHHHHHhccCCcEEEEeeChHHHHHHHHHHHHc---CCCEEEEeCCCCC
Q 030169 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA---ELDLVVCITEGIP 152 (182)
Q Consensus 105 y~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie~---GIk~VV~iTeG~~ 152 (182)
.++++|+++ ++|++|+.||.....+++++.... +.+.|.+ |.|+-
T Consensus 108 t~dl~~al~--~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~-~KGie 155 (391)
T 4fgw_A 108 NPDLIDSVK--DVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISC-LKGFE 155 (391)
T ss_dssp ESCHHHHHT--TCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEEC-CCSCE
T ss_pred eCCHHHHHh--cCCEEEEECChhhhHHHHHHhccccCCCceeEEe-ccccc
Confidence 778999998 899999999999999999887543 4444554 99984
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00062 Score=59.09 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=67.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-ME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~-~e 135 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ ++|+..... ....--|.+++|+.+ ++|++++.+|... ...++ ++
T Consensus 145 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~--~~d~~~~~~-~~~~~~~~~l~ell~--~aDvV~~~~P~~~~t~~li~~~ 218 (333)
T 1dxy_A 145 QQTVGVMGT-GHIGQVAIKLFKGFGAKVI--AYDPYPMKG-DHPDFDYVSLEDLFK--QSDVIDLHVPGIEQNTHIINEA 218 (333)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCSS-CCTTCEECCHHHHHH--HCSEEEECCCCCGGGTTSBCHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCCcchh-hHhccccCCHHHHHh--cCCEEEEcCCCchhHHHHhCHH
Confidence 357999999 9999999999999999998 777765321 122223568999888 7999999999754 22222 12
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 136 AMEA-EL-DLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 136 Aie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.++. +- ..+|+++.| +.-|...|.++.+.--
T Consensus 219 ~l~~mk~ga~lIn~srg-~~vd~~aL~~aL~~g~ 251 (333)
T 1dxy_A 219 AFNLMKPGAIVINTARP-NLIDTQAMLSNLKSGK 251 (333)
T ss_dssp HHHHSCTTEEEEECSCT-TSBCHHHHHHHHHTTS
T ss_pred HHhhCCCCcEEEECCCC-cccCHHHHHHHHHhCC
Confidence 2222 22 245665665 4455556666554433
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0024 Score=52.14 Aligned_cols=87 Identities=22% Similarity=0.036 Sum_probs=59.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE-----ecCccc-------cccHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE-----HLGLPV-------FNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~-----i~GvPV-------y~Sv~ea~~~~~~DvaVdfV 124 (182)
.++|+|.|++|..|+.+++.+.+.| .+|+ +. +....... ..++.+ ..+++++.+ ++|+++...
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~-~~-~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a 80 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVR-VV-TRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN--GAYATFIVT 80 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEE-EE-ESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEE-EE-EcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHh--cCCEEEEeC
Confidence 4679999999999999999999888 8888 43 33221100 012222 233556666 799999887
Q ss_pred ChH----------HHHHHHHHHHHcCCCEEEEeC
Q 030169 125 PPP----------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 125 pp~----------av~~a~~eAie~GIk~VV~iT 148 (182)
... ....+++.|.++|++.+|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S 114 (299)
T 2wm3_A 81 NYWESCSQEQEVKQGKLLADLARRLGLHYVVYSG 114 (299)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CCCccccchHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 632 345677778888999888744
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00061 Score=49.31 Aligned_cols=90 Identities=8% Similarity=0.093 Sum_probs=57.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccc-cc---cHHHHHh--ccCCcEEEEeeChH--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPV-FN---SVAEAKA--ETKANASVIYVPPP-- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPV-y~---Sv~ea~~--~~~~DvaVdfVpp~-- 127 (182)
.+|+|+|+ |.+|+.+++.+.+.|.+++ .++......+ ..+..+ +. +.+.+.+ -.++|++++.++..
T Consensus 7 ~~v~I~G~-G~iG~~~a~~l~~~g~~v~--~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144)
T 2hmt_A 7 KQFAVIGL-GRFGGSIVKELHRMGHEVL--AVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCCE--EEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence 46999998 9999999999999898877 4444321000 012222 22 2222221 12699999999963
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
....++..+.+.|++.+++.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~ii~~~~~~ 107 (144)
T 2hmt_A 84 ASTLTTLLLKELDIPNIWVKAQNY 107 (144)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCH
Confidence 345677777788988777756553
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0011 Score=52.07 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=58.4
Q ss_pred eEEEEccCCCCchhhhHHHH-HhCCceEEee-ccCC-CC------CeEe----cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 60 RVICQGITGKNGTFHTEQAI-EYGTKMVVGG-VTPK-KG------GTEH----LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~-~~g~~IV~Ag-Vdp~-~~------G~~i----~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+|+|.|++|..|+.+++.+. +.|.+|+ +. -++. +. +..+ .++-=.++++++.+ ++|++|.....
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vv~~ag~ 83 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDMHIT-LYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVT--NAEVVFVGAME 83 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCCEEE-EEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHT--TCSEEEESCCC
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCceEE-EEecCccccchhhccCCCceEEEECCCCCHHHHHHHHc--CCCEEEEcCCC
Confidence 39999999999999999999 8899988 32 2322 11 1001 12222234566666 78999987754
Q ss_pred ---HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 ---PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ---~av~~a~~eAie~GIk~VV~iT 148 (182)
. ++.+++.+.+.|++.+|.++
T Consensus 84 ~n~~-~~~~~~~~~~~~~~~iv~iS 107 (221)
T 3r6d_A 84 SGSD-MASIVKALSRXNIRRVIGVS 107 (221)
T ss_dssp CHHH-HHHHHHHHHHTTCCEEEEEE
T ss_pred CChh-HHHHHHHHHhcCCCeEEEEe
Confidence 3 66777778888998877655
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0022 Score=53.75 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=62.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--------------CCeE--ecCccccccHHHHHhccCCcEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--------------GGTE--HLGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--------------~G~~--i~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +.+-... .+-+ ..++-=..++.++.+++++|+++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~-~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 88 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTY-ILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV 88 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEE-EEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEE-EEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence 36799999999999999999999998888 4433220 0111 11233234567777766899999
Q ss_pred EeeCh---HHHHHHHHHHHHcC-CCEEEE
Q 030169 122 IYVPP---PFAAAAIMEAMEAE-LDLVVC 146 (182)
Q Consensus 122 dfVpp---~av~~a~~eAie~G-Ik~VV~ 146 (182)
..... .....+++.|.++| ++.+|.
T Consensus 89 ~~a~~~n~~~~~~l~~aa~~~g~v~~~v~ 117 (346)
T 3i6i_A 89 STVGGESILDQIALVKAMKAVGTIKRFLP 117 (346)
T ss_dssp ECCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred ECCchhhHHHHHHHHHHHHHcCCceEEee
Confidence 88775 35567888888899 999875
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0012 Score=54.93 Aligned_cols=90 Identities=8% Similarity=0.005 Sum_probs=60.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeE----------------ecCccccccHHHHHhccCCc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTE----------------HLGLPVFNSVAEAKAETKAN 118 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~----------------i~GvPVy~Sv~ea~~~~~~D 118 (182)
+.++|+|.|++|-.|+.+++.+.+.| .+++ +++....... ..++-=..+++++.+..++|
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKII--NFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEE--EEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEE--EEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence 34789999999999999999999988 6677 5543321100 01222233466777655699
Q ss_pred EEEEeeChH------------------HHHHHHHHHHHcCCCEEEEeC
Q 030169 119 ASVIYVPPP------------------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 119 vaVdfVpp~------------------av~~a~~eAie~GIk~VV~iT 148 (182)
++|.+.... .+..+++.|.+.|++.+|.++
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~S 148 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVS 148 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEE
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999765321 246678888888999776655
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0019 Score=53.73 Aligned_cols=88 Identities=9% Similarity=0.081 Sum_probs=60.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------------------E--ecCccccccHHHHHhcc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------------------E--HLGLPVFNSVAEAKAET 115 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------------------~--i~GvPVy~Sv~ea~~~~ 115 (182)
..++|+|.|++|-.|+.+++.+.+.|.+|+ +++....+. + ..++-=..+++++.+
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-- 99 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVI--GLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK-- 99 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT--
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc--
Confidence 357899999999999999999999999988 443322110 1 112322333566666
Q ss_pred CCcEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 116 KANASVIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 116 ~~DvaVdfVpp------------------~av~~a~~eAie~GIk~VV~iT 148 (182)
++|+++..... ..+..+++.|.+.|++.+|.++
T Consensus 100 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~S 150 (351)
T 3ruf_A 100 GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAA 150 (351)
T ss_dssp TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 79999987642 1234578888888998777654
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0024 Score=51.13 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=60.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHh--ccCCcEEEEeeChHHH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA--ETKANASVIYVPPPFA-AAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~--~~~~DvaVdfVpp~av-~~a~~e 135 (182)
.+++|+|+ |..|+.+.+.+.+.+.+++ |-+|.....+.+.|+||+...+++.+ +...|-+++..+.... ....+.
T Consensus 13 k~v~IiGA-Gg~g~~v~~~l~~~~~~~v-gfiDd~~~~~~~~g~~Vlg~~~~~~~~~~~~~~~v~iAIg~~~~R~~i~~~ 90 (220)
T 4ea9_A 13 GGVVIIGG-GGHAKVVIESLRACGETVA-AIVDADPTRRAVLGVPVVGDDLALPMLREQGLSRLFVAIGDNRLRQKLGRK 90 (220)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEE-EEECSCC---CBTTBCEEESGGGHHHHHHTTCCEEEECCCCHHHHHHHHHH
T ss_pred CCEEEEcC-CHHHHHHHHHHHhCCCEEE-EEEeCCcccCcCCCeeEECCHHHHHHhhcccccEEEEecCCHHHHHHHHHH
Confidence 47999999 8899999998888889999 88887765445789999988554332 1235667777775544 456666
Q ss_pred HHHcCCCEE
Q 030169 136 AMEAELDLV 144 (182)
Q Consensus 136 Aie~GIk~V 144 (182)
+.+.|++..
T Consensus 91 l~~~g~~~~ 99 (220)
T 4ea9_A 91 ARDHGFSLV 99 (220)
T ss_dssp HHHTTCEEC
T ss_pred HHhcCCCcC
Confidence 667776553
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0023 Score=52.73 Aligned_cols=87 Identities=9% Similarity=0.069 Sum_probs=56.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eEec--Cccc-------cccHHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TEHL--GLPV-------FNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~i~--GvPV-------y~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
.|+|+|.|++|..|+.+++.+.+.|.+|+ + ++..... +... ++.+ ..+++++.+ ++|+++......
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~a~~~ 88 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLV-L-IHRPSSQIQRLAYLEPECRVAEMLDHAGLERALR--GLDGVIFSAGYY 88 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEE-E-EECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT--TCSEEEEC----
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE-E-EecChHhhhhhccCCeEEEEecCCCHHHHHHHHc--CCCEEEECCccC
Confidence 36899999999999999999999999988 4 3332211 0010 2221 223555565 789998876431
Q ss_pred ----------------HHHHHHHHHHHcCCCEEEEeC
Q 030169 128 ----------------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 128 ----------------av~~a~~eAie~GIk~VV~iT 148 (182)
.+..+++.|.++|++.+|.++
T Consensus 89 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~S 125 (342)
T 2x4g_A 89 PSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVG 125 (342)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHTCSCEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEC
Confidence 245677778888987776655
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00031 Score=64.93 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=72.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--CC-e-----EecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--GG-T-----EHLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--~G-~-----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+..+|+|+|+ |.+|++++.++.+.|.+|+ -|+-|+. .+ + +..|+.|+ +++|+.+ ..|++++.+|-..
T Consensus 36 kgK~IaVIGy-GsQG~AqAlNLRDSGv~V~-Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~--~ADvV~~L~PD~~ 110 (491)
T 3ulk_A 36 QGKKVVIVGC-GAQGLNQGLNMRDSGLDIS-YALRKEAIAEKRASWRKATENGFKVG-TYEELIP--QADLVINLTPDKQ 110 (491)
T ss_dssp TTSEEEEESC-SHHHHHHHHHHHHTTCEEE-EEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGG--GCSEEEECSCGGG
T ss_pred cCCEEEEeCC-ChHhHHHHhHHHhcCCcEE-EEeCCCCcccccchHHHHHHCCCEec-CHHHHHH--hCCEEEEeCChhh
Confidence 4578999999 9999999999999999999 5554331 11 1 23589988 5889888 7999999999887
Q ss_pred HHHHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030169 129 AAAAIMEAMEAELD--LVVCITEGIPQHD 155 (182)
Q Consensus 129 v~~a~~eAie~GIk--~VV~iTeG~~~eD 155 (182)
-.++.++ ++-..+ ..++++-||..+.
T Consensus 111 q~~vy~~-I~p~lk~G~~L~faHGFnI~~ 138 (491)
T 3ulk_A 111 HSDVVRT-VQPLMKDGAALGYSHGFNIVE 138 (491)
T ss_dssp HHHHHHH-HGGGSCTTCEEEESSCHHHHT
T ss_pred HHHHHHH-HHhhCCCCCEEEecCcccccc
Confidence 7777764 776555 4788899997763
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00081 Score=59.37 Aligned_cols=101 Identities=13% Similarity=0.020 Sum_probs=66.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee--cCc------------------cccccHHHHHhccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH--LGL------------------PVFNSVAEAKAETKA 117 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i--~Gv------------------PVy~Sv~ea~~~~~~ 117 (182)
+||.|+|+ |.||..++..+.+ |.+++ ++|....-- .+ .+. .+..+.+++.+ ++
T Consensus 1 MkI~VIG~-G~vG~~~A~~La~-G~~V~--~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--~a 74 (402)
T 1dlj_A 1 MKIAVAGS-GYVGLSLGVLLSL-QNEVT--IVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--EA 74 (402)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TSEEE--EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--HC
T ss_pred CEEEEECC-CHHHHHHHHHHhC-CCEEE--EEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--CC
Confidence 47999999 9999999999888 98887 666543100 00 133 33455667676 68
Q ss_pred cEEEEeeChH-----------HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 118 NASVIYVPPP-----------FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 118 DvaVdfVpp~-----------av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
|++++.||+. .+.++++.....+-..+|+.....+....+++.+...+
T Consensus 75 Dvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~~~ 133 (402)
T 1dlj_A 75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQT 133 (402)
T ss_dssp SEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTC
T ss_pred CEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHhCC
Confidence 9999999997 57777766555333345444334555556666665443
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0022 Score=54.46 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=64.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC------CC--------eEecCccccccHHHHHhccCCcEEEEe
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK------GG--------TEHLGLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~------~G--------~~i~GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
.+||+|+|+ |.||..++..+.+.|.+|. .-.++.. .| .....+++.++.++ .+ ++|++++.
T Consensus 19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~~V~-l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~--~~D~vila 93 (318)
T 3hwr_A 19 GMKVAIMGA-GAVGCYYGGMLARAGHEVI-LIARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQ--GADLVLFC 93 (318)
T ss_dssp -CEEEEESC-SHHHHHHHHHHHHTTCEEE-EECCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GT--TCSEEEEC
T ss_pred CCcEEEECc-CHHHHHHHHHHHHCCCeEE-EEEcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cC--CCCEEEEE
Confidence 478999999 9999999999998887777 3222211 01 11123445566655 34 79999999
Q ss_pred eChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030169 124 VPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 155 (182)
Q Consensus 124 Vpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~eD 155 (182)
||+....+++++.... + =..||.++-|+..++
T Consensus 94 vk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~ 127 (318)
T 3hwr_A 94 VKSTDTQSAALAMKPALAKSALVLSLQNGVENAD 127 (318)
T ss_dssp CCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH
T ss_pred cccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH
Confidence 9999988888765433 1 135666799999864
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00052 Score=59.89 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=65.9
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccC-CCCC-----------------e--------Eec--Cccccc--c
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTP-KKGG-----------------T--------EHL--GLPVFN--S 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp-~~~G-----------------~--------~i~--GvPVy~--S 107 (182)
.||.|.|+ |++|+.+.+.+.+ .+++|+ +-.++ ...+ . .++ .++++. +
T Consensus 4 ikVgI~G~-G~iGr~~~R~l~~~~~vevv-aI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d 81 (335)
T 1u8f_O 4 VKVGVNGF-GRIGRLVTRAAFNSGKVDIV-AINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD 81 (335)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSSEEE-EEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEEcc-CHHHHHHHHHHHcCCCcEEE-EecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCC
Confidence 58999998 9999999998775 459999 76664 1111 0 011 234453 5
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG 150 (182)
+++++ .+.++|++++.+|.....+.+..++++|.+.|++ +..
T Consensus 82 ~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~i-Sap 124 (335)
T 1u8f_O 82 PSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVII-SAP 124 (335)
T ss_dssp GGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEE-SSC
T ss_pred HHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEe-ccC
Confidence 66653 2237999999999999999999999999999998 543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0017 Score=51.70 Aligned_cols=89 Identities=11% Similarity=0.040 Sum_probs=59.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEee-ccCCCCCe------E--ecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGG-VTPKKGGT------E--HLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~Ag-Vdp~~~G~------~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
.++|+|.|++|..|+.+++.+.+.| .+|+ +. -++.+... + ..++-=..+++++++ ++|++|......
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~-~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~vv~~a~~~ 99 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQT-LFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQ--GQDIVYANLTGE 99 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEE-EEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHT--TCSEEEEECCST
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEE-EEEcChhhhcccccCCcEEEEecCCCHHHHHHHhc--CCCEEEEcCCCC
Confidence 3679999999999999999999999 7888 32 22222110 0 012222233556666 789998766542
Q ss_pred ----HHHHHHHHHHHcCCCEEEEeCC
Q 030169 128 ----FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 128 ----av~~a~~eAie~GIk~VV~iTe 149 (182)
.+..+++.+.+.|++.+|.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~iV~iSS 125 (236)
T 3qvo_A 100 DLDIQANSVIAAMKACDVKRLIFVLS 125 (236)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred chhHHHHHHHHHHHHcCCCEEEEEec
Confidence 3456677777889998887775
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00087 Score=54.38 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=58.9
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH--------
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-------- 127 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-------- 127 (182)
.++++|+|.|++|..|+.+++.+.+.|.+|+ +++... + ++-=..++++++++.++|+++......
T Consensus 10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~--~~~r~~-~----Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~ 82 (292)
T 1vl0_A 10 HHHMKILITGANGQLGREIQKQLKGKNVEVI--PTDVQD-L----DITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQ 82 (292)
T ss_dssp --CEEEEEESTTSHHHHHHHHHHTTSSEEEE--EECTTT-C----CTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHC
T ss_pred cccceEEEECCCChHHHHHHHHHHhCCCeEE--eccCcc-C----CCCCHHHHHHHHHhcCCCEEEECCccCCHHHHhcC
Confidence 4678999999999999999999999998888 555543 2 232344567777655799998875421
Q ss_pred ----------HHHHHHHHHHHcCCCEEEE
Q 030169 128 ----------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 ----------av~~a~~eAie~GIk~VV~ 146 (182)
.+..+++.|.++|++.|..
T Consensus 83 ~~~~~~~nv~~~~~l~~a~~~~~~~iv~~ 111 (292)
T 1vl0_A 83 YDLAYKINAIGPKNLAAAAYSVGAEIVQI 111 (292)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 1456777778888844443
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00065 Score=60.62 Aligned_cols=89 Identities=13% Similarity=0.051 Sum_probs=65.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeec-cCCCCCeEec----------------CccccccHH-H-HHhccCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGV-TPKKGGTEHL----------------GLPVFNSVA-E-AKAETKA 117 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgV-dp~~~G~~i~----------------GvPVy~Sv~-e-a~~~~~~ 117 (182)
..||.|+|+||--|+++.+.+.+.. ++|+ .-. +....|+.+. ++.+ ...+ + ..+ ++
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~-~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v-~~~~~~~~~~--~~ 94 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHPEFEIH-ALGASSRSAGKKYKDAASWKQTETLPETEQDIVV-QECKPEGNFL--EC 94 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEE-EEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBC-EESSSCTTGG--GC
T ss_pred ccEEEEECCCChHHHHHHHHHHcCCCceEE-EeeccccccCCCHHHhcccccccccccccccceE-EeCchhhhcc--cC
Confidence 4789999999999999999888755 7887 443 4555665542 1122 1111 1 223 69
Q ss_pred cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 118 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 118 DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
|+++...|...+.+.+.+++++|+++|-+ +.-+
T Consensus 95 Dvvf~alp~~~s~~~~~~~~~~G~~VIDl-Sa~f 127 (381)
T 3hsk_A 95 DVVFSGLDADVAGDIEKSFVEAGLAVVSN-AKNY 127 (381)
T ss_dssp SEEEECCCHHHHHHHHHHHHHTTCEEEEC-CSTT
T ss_pred CEEEECCChhHHHHHHHHHHhCCCEEEEc-CCcc
Confidence 99999999999999999999999997776 6544
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0011 Score=60.17 Aligned_cols=101 Identities=15% Similarity=0.075 Sum_probs=70.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee--cC--------------------ccccccHHHHHhc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH--LG--------------------LPVFNSVAEAKAE 114 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i--~G--------------------vPVy~Sv~ea~~~ 114 (182)
.+||.|+|. |.||..++..+.+.|.+++ ++|....-- .+ .+ +....+++++.+
T Consensus 8 ~~~I~VIG~-G~vG~~lA~~la~~G~~V~--~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~- 83 (478)
T 2y0c_A 8 SMNLTIIGS-GSVGLVTGACLADIGHDVF--CLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVA- 83 (478)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHH-
T ss_pred CceEEEECc-CHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhh-
Confidence 589999998 9999999999999999888 666532100 00 12 334445666666
Q ss_pred cCCcEEEEeeCh----------HHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 115 TKANASVIYVPP----------PFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 115 ~~~DvaVdfVpp----------~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
++|++++.||. ..+.++++..... .-..+|+...++++...+++.+..
T Consensus 84 -~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l 142 (478)
T 2y0c_A 84 -HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAV 142 (478)
T ss_dssp -HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHH
T ss_pred -cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHH
Confidence 69999999997 7888888766553 333455557788876666655544
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00093 Score=59.31 Aligned_cols=89 Identities=16% Similarity=0.071 Sum_probs=64.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+||.|+|+||.-|+.+.+.+.+.+ .+++ ....+...|+.+. ++.+-+.-.+..+ ++|+++..+|.....+
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~-~~as~~saG~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~a~~~~~s~~ 79 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIR-YLASARSAGKSLKFKDQDITIEETTETAFE--GVDIALFSAGSSTSAK 79 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEE-EEECTTTTTCEEEETTEEEEEEECCTTTTT--TCSEEEECSCHHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEE-EEEccccCCCcceecCCCceEeeCCHHHhc--CCCEEEECCChHhHHH
Confidence 689999999999999999888754 5566 5555666665442 2222211112233 7999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCC
Q 030169 132 AIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~ 151 (182)
.+..++++|.+.|-. +.-+
T Consensus 80 ~a~~~~~~G~~vIDl-Sa~~ 98 (366)
T 3pwk_A 80 YAPYAVKAGVVVVDN-TSYF 98 (366)
T ss_dssp HHHHHHHTTCEEEEC-SSTT
T ss_pred HHHHHHHCCCEEEEc-CCcc
Confidence 999999999987665 6443
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00066 Score=59.68 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=68.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-ecCccccccHHHHHhccCCcEEEEeeCh-HHHHHHH-H
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-HLGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAI-M 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i~GvPVy~Sv~ea~~~~~~DvaVdfVpp-~av~~a~-~ 134 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ +.|+.....+ ..|+..+++++|+.+ +.|++++.+|- ......+ .
T Consensus 173 gktvGIIGl-G~IG~~vA~~l~~~G~~V~--~~dr~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~~Plt~~T~~li~~ 247 (345)
T 4g2n_A 173 GRRLGIFGM-GRIGRAIATRARGFGLAIH--YHNRTRLSHALEEGAIYHDTLDSLLG--ASDIFLIAAPGRPELKGFLDH 247 (345)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHTTTCEEE--EECSSCCCHHHHTTCEECSSHHHHHH--TCSEEEECSCCCGGGTTCBCH
T ss_pred CCEEEEEEe-ChhHHHHHHHHHHCCCEEE--EECCCCcchhhhcCCeEeCCHHHHHh--hCCEEEEecCCCHHHHHHhCH
Confidence 357999998 9999999999999999999 7888642211 225655679999999 89999999994 3333333 2
Q ss_pred HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 eAie~-GIk-~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.++. +-. .+|+++.|=. -|...|.++-+.
T Consensus 248 ~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~ 279 (345)
T 4g2n_A 248 DRIAKIPEGAVVINISRGDL-INDDALIEALRS 279 (345)
T ss_dssp HHHHHSCTTEEEEECSCGGG-BCHHHHHHHHHH
T ss_pred HHHhhCCCCcEEEECCCCch-hCHHHHHHHHHh
Confidence 23322 222 4666454544 444444444443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00036 Score=60.17 Aligned_cols=100 Identities=11% Similarity=0.125 Sum_probs=65.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccC-CCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP-KKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp-~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~ 133 (182)
.++|.|+|+ |+||+.+++.+..+|++|+ ++|+ ...... ..|+...++++|+.+ ++|++++.+|... ...++
T Consensus 146 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~--~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVil~~p~~~~t~~~i 220 (320)
T 1gdh_A 146 NKTLGIYGF-GSIGQALAKRAQGFDMDID--YFDTHRASSSDEASYQATFHDSLDSLLS--VSQFFSLNAPSTPETRYFF 220 (320)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE--EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCCTTTTTCB
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCCCcChhhhhhcCcEEcCCHHHHHh--hCCEEEEeccCchHHHhhc
Confidence 457999999 9999999999999999998 8888 553211 135655558999888 7999999999643 33333
Q ss_pred HH-HHHc-CC-CEEEEeCCCCCHHHHHHHHHHh
Q 030169 134 ME-AMEA-EL-DLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 134 ~e-Aie~-GI-k~VV~iTeG~~~eD~~~l~~~a 163 (182)
.+ .++. +- ..+|+++.| ..-|...|.++.
T Consensus 221 ~~~~l~~mk~gailIn~arg-~~vd~~aL~~aL 252 (320)
T 1gdh_A 221 NKATIKSLPQGAIVVNTARG-DLVDNELVVAAL 252 (320)
T ss_dssp SHHHHTTSCTTEEEEECSCG-GGBCHHHHHHHH
T ss_pred CHHHHhhCCCCcEEEECCCC-cccCHHHHHHHH
Confidence 22 2222 21 246665666 223333344433
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00044 Score=53.36 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=60.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE---ecCcccc-cc---HHHHHhc---cCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE---HLGLPVF-NS---VAEAKAE---TKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~---i~GvPVy-~S---v~ea~~~---~~~DvaVdfVpp 126 (182)
..+|+|+|+ |++|+.+++.+.+. |.+++ ++|....--+ ..|+.++ .+ .+.+.+. .++|++++.+|.
T Consensus 39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~--vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 39 HAQVLILGM-GRIGTGAYDELRARYGKISL--GIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp TCSEEEECC-SHHHHHHHHHHHHHHCSCEE--EEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred CCcEEEECC-CHHHHHHHHHHHhccCCeEE--EEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence 457999997 99999999999998 98888 6655431100 1255543 22 2222121 268999999986
Q ss_pred HHHH-HHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHH
Q 030169 127 PFAA-AAIMEAMEAE-LDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 127 ~av~-~a~~eAie~G-Ik~VV~iTeG~~~eD~~~l~~~ 162 (182)
.... .++..+.+.+ ...|++.+. ..+....+.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~ii~~~~--~~~~~~~l~~~ 151 (183)
T 3c85_A 116 HQGNQTALEQLQRRNYKGQIAAIAE--YPDQLEGLLES 151 (183)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEES--SHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHc
Confidence 5544 4445555556 445555443 34444455443
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0022 Score=52.98 Aligned_cols=91 Identities=10% Similarity=0.081 Sum_probs=61.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---------------E--ecCccccccHHHHHhccCCcE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---------------E--HLGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---------------~--i~GvPVy~Sv~ea~~~~~~Dv 119 (182)
..++|+|.|++|-.|+.+++.+.+.|.+|+ + ++...... + ..++-=..+++++.++.++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVV-I-ADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEE-E-ECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEE-E-EecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 457899999999999999999999999988 3 33321110 0 012322344666666567999
Q ss_pred EEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 120 SVIYVPP------------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 120 aVdfVpp------------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
++...-. ..+..+++.|.+.|++.+|.+++
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 129 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS 129 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 9876531 23456777788889988877664
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0052 Score=48.37 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=59.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeE----------ecCccccccHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTE----------HLGLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~----------i~GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
.++|+|.|++|..|+.+++.+.+.|. +|+ + ++......+ ..++-=..+++++.+ ++|++|....
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~-~-~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~ag 93 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVT-L-IGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ--GHDVGFCCLG 93 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEE-E-EESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS--SCSEEEECCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEE-E-EEcCCCCccccccCCceEEecCcCCHHHHHHHhc--CCCEEEECCC
Confidence 46799999999999999999999997 888 3 333221110 012222234555555 7899998765
Q ss_pred h---------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 126 P---------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 126 p---------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
. ..+..+++.+.+.|++.+|.+++
T Consensus 94 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS 132 (242)
T 2bka_A 94 TTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS 132 (242)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEcc
Confidence 3 23456677778889988887664
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00065 Score=57.55 Aligned_cols=91 Identities=20% Similarity=0.195 Sum_probs=65.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC------CeEe----------cCccccccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG------GTEH----------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~------G~~i----------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
+||+|+|+ |.||..+...+.+.|.+|. .+++... |-.+ ..+.++.+.+++.+ ++|++++
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~~V~--~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~--~~DlVil 77 (320)
T 3i83_A 3 LNILVIGT-GAIGSFYGALLAKTGHCVS--VVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET--KPDCTLL 77 (320)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHTTCEEE--EECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS--CCSEEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE--EEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCC--CCCEEEE
Confidence 68999999 9999999999998887777 5555431 1001 12456677777664 7999999
Q ss_pred eeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHH
Q 030169 123 YVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQH 154 (182)
Q Consensus 123 fVpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~e 154 (182)
.||+....+++++.... + =..||.++-|+..+
T Consensus 78 avK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~ 111 (320)
T 3i83_A 78 CIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE 111 (320)
T ss_dssp CCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS
T ss_pred ecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH
Confidence 99999988887765433 1 13567779999744
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0022 Score=58.04 Aligned_cols=103 Identities=20% Similarity=0.156 Sum_probs=71.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee----------------------cCccccccHHHHHhc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH----------------------LGLPVFNSVAEAKAE 114 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i----------------------~GvPVy~Sv~ea~~~ 114 (182)
.-||.|+|. |.||..++..+.+.|.+++ ++|....-- .+ ..+.+-.+++|+.+
T Consensus 8 ~~~~~vIGl-G~vG~~~A~~La~~G~~V~--~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~- 83 (446)
T 4a7p_A 8 SVRIAMIGT-GYVGLVSGACFSDFGHEVV--CVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVK- 83 (446)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHT-
T ss_pred ceEEEEEcC-CHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHh-
Confidence 368999998 9999999999999999988 554433110 00 11344567888887
Q ss_pred cCCcEEEEeeChH-----------HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 115 TKANASVIYVPPP-----------FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 115 ~~~DvaVdfVpp~-----------av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++|++++.||-. .+.++++...+. .-..+|+..+++++.-.+++.+..++
T Consensus 84 -~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446)
T 4a7p_A 84 -DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446)
T ss_dssp -TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred -cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 799999997644 477777666554 22234444778998888877776543
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00057 Score=61.19 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=68.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~ 133 (182)
.++|.|+|+ |+||+.+++.+..+|++|+ +.|+.....+ ..|+..+.+++|+.+ ++|++++.+|.. .+..++
T Consensus 191 gktvGIIGl-G~IG~~vA~~l~a~G~~V~--~~d~~~~~~~~~~~~G~~~~~~l~ell~--~aDvV~l~~Plt~~t~~li 265 (393)
T 2nac_A 191 AMHVGTVAA-GRIGLAVLRRLAPFDVHLH--YTDRHRLPESVEKELNLTWHATREDMYP--VCDVVTLNCPLHPETEHMI 265 (393)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTCEEE--EECSSCCCHHHHHHHTCEECSSHHHHGG--GCSEEEECSCCCTTTTTCB
T ss_pred CCEEEEEeE-CHHHHHHHHHHHhCCCEEE--EEcCCccchhhHhhcCceecCCHHHHHh--cCCEEEEecCCchHHHHHh
Confidence 457999999 9999999999999999998 7887643221 136666678999988 799999999953 334444
Q ss_pred H-HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 134 M-EAMEA-EL-DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 134 ~-eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
. +.++. +- ..+|+++.| +.-|...|.++.+
T Consensus 266 ~~~~l~~mk~gailIN~aRG-~~vde~aL~~aL~ 298 (393)
T 2nac_A 266 NDETLKLFKRGAYIVNTARG-KLCDRDAVARALE 298 (393)
T ss_dssp SHHHHTTSCTTEEEEECSCG-GGBCHHHHHHHHH
T ss_pred hHHHHhhCCCCCEEEECCCc-hHhhHHHHHHHHH
Confidence 2 33332 22 236775665 4444444544443
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0025 Score=53.07 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=59.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-----EecC-------ccccccHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-----EHLG-------LPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-----~i~G-------vPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ + ++....+. ++.+ +-=..+++++.++.++|++|....
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~ 97 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGHEIL-V-IDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAA 97 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTCEEE-E-EECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE-E-EECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 46899999999999999999999999988 4 43322111 1112 221223555555447899988764
Q ss_pred h---------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 126 P---------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 126 p---------------~av~~a~~eAie~GIk~VV~iT 148 (182)
. ..+..+++.|.++|++.+|.++
T Consensus 98 ~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~S 135 (330)
T 2pzm_A 98 AYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQ 135 (330)
T ss_dssp CCSCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cCCCccccChhHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 2 2345677788888998777655
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00044 Score=60.37 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=69.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ ++||...... ..|+. +.+++|+.+ ++|++++.+|... ...++.
T Consensus 165 g~tvgIIGl-G~IG~~vA~~l~~~G~~V~--~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~P~t~~t~~li~ 238 (335)
T 2g76_A 165 GKTLGILGL-GRIGREVATRMQSFGMKTI--GYDPIISPEVSASFGVQ-QLPLEEIWP--LCDFITVHTPLLPSTTGLLN 238 (335)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE--EECSSSCHHHHHHTTCE-ECCHHHHGG--GCSEEEECCCCCTTTTTSBC
T ss_pred cCEEEEEeE-CHHHHHHHHHHHHCCCEEE--EECCCcchhhhhhcCce-eCCHHHHHh--cCCEEEEecCCCHHHHHhhC
Confidence 457999999 9999999999999999998 8888653211 12443 458999888 7999999999864 344442
Q ss_pred -HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 135 -EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 135 -eAie~-GIk-~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+.++. +-. .+|+++.| +.-|...|.++.+.-.+
T Consensus 239 ~~~l~~mk~gailIN~arg-~vvd~~aL~~aL~~g~i 274 (335)
T 2g76_A 239 DNTFAQCKKGVRVVNCARG-GIVDEGALLRALQSGQC 274 (335)
T ss_dssp HHHHTTSCTTEEEEECSCT-TSBCHHHHHHHHHHTSE
T ss_pred HHHHhhCCCCcEEEECCCc-cccCHHHHHHHHHhCCc
Confidence 33332 222 35665565 44455555555544333
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0012 Score=53.06 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=57.4
Q ss_pred eEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE-e--cCccc-------cccHHHHHhccCCcEEEEeeCh-
Q 030169 60 RVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE-H--LGLPV-------FNSVAEAKAETKANASVIYVPP- 126 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~-i--~GvPV-------y~Sv~ea~~~~~~DvaVdfVpp- 126 (182)
+|+|.|++|..|+.+++.+.+. |.+|+ + ++......+ . .++.+ .++++++++ ++|+++.....
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~ 76 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIV-A-IVRNPAKAQALAAQGITVRQADYGDEAALTSALQ--GVEKLLLISSSE 76 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEE-E-EESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECC---
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEE-E-EEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHh--CCCEEEEeCCCC
Confidence 5899999999999999999987 88888 4 333221100 0 12222 233555565 78999877654
Q ss_pred -----HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 -----PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 -----~av~~a~~eAie~GIk~VV~iTe 149 (182)
..+..+++.|.++|++.+|.+++
T Consensus 77 ~~~~~~~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 77 VGQRAPQHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp -----CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred chHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 35667788888889988776554
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0026 Score=56.22 Aligned_cols=82 Identities=11% Similarity=-0.009 Sum_probs=58.3
Q ss_pred ceEEEEccCCCCchhhhH-HHHHhC---CceEEeeccCCCCCeEec-----Ccccccc--HHHHHhccCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTE-QAIEYG---TKMVVGGVTPKKGGTEHL-----GLPVFNS--VAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k-~~~~~g---~~IV~AgVdp~~~G~~i~-----GvPVy~S--v~ea~~~~~~DvaVdfVpp~ 127 (182)
+||.|.|++|..|+.+.+ .+.+.+ .+|+ .+.....|+.+. .+++.+. .++ .+ ++|+++..+|..
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~--~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~--~~DvVf~a~g~~ 76 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPV--FFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LK--ALDIIVTCQGGD 76 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEE--EEESSSTTSBCCGGGTCCCBCEETTCHHH-HH--TCSEEEECSCHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEE--EEEeCCCCCCccccCCCceEEEecCChHH-hc--CCCEEEECCCch
Confidence 489999999999999999 555554 3444 232223454331 3444432 333 34 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 030169 128 FAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV 145 (182)
...+.+..++++|.+.+|
T Consensus 77 ~s~~~a~~~~~~G~k~vV 94 (367)
T 1t4b_A 77 YTNEIYPKLRESGWQGYW 94 (367)
T ss_dssp HHHHHHHHHHHTTCCCEE
T ss_pred hHHHHHHHHHHCCCCEEE
Confidence 999999999999996444
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00047 Score=60.71 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=67.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCc-eEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChH-HHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~-IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a 132 (182)
.++|.|+|+ |+||+.+++.+..+|++ |+ +.|+.....+ ..|+..+.+++|+.+ ++|++++.+|.. ....+
T Consensus 164 g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~--~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~P~t~~t~~l 238 (364)
T 2j6i_A 164 GKTIATIGA-GRIGYRVLERLVPFNPKELL--YYDYQALPKDAEEKVGARRVENIEELVA--QADIVTVNAPLHAGTKGL 238 (364)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGCCSEEE--EECSSCCCHHHHHHTTEEECSSHHHHHH--TCSEEEECCCCSTTTTTC
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCcEEE--EECCCccchhHHHhcCcEecCCHHHHHh--cCCEEEECCCCChHHHHH
Confidence 457999999 99999999999999997 88 7776542211 235555678999998 899999999986 33333
Q ss_pred HH-HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 133 IM-EAMEA-EL-DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 133 ~~-eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+. +.++. +- ..+|+++.| +.-|...|.++.+
T Consensus 239 i~~~~l~~mk~ga~lIn~arG-~~vd~~aL~~aL~ 272 (364)
T 2j6i_A 239 INKELLSKFKKGAWLVNTARG-AICVAEDVAAALE 272 (364)
T ss_dssp BCHHHHTTSCTTEEEEECSCG-GGBCHHHHHHHHH
T ss_pred hCHHHHhhCCCCCEEEECCCC-chhCHHHHHHHHH
Confidence 32 22222 21 236775666 3444454555443
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00061 Score=58.73 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=63.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~ 133 (182)
.++|.|+|+ |+||+.+++.+...|.+|+ ++|+.....+ ..|+... +++|+++ ++|++++.+|... ...++
T Consensus 155 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~--~~d~~~~~~~~~~~~g~~~~-~l~e~l~--~aDvVi~~vp~~~~t~~~i 228 (330)
T 2gcg_A 155 QSTVGIIGL-GRIGQAIARRLKPFGVQRF--LYTGRQPRPEEAAEFQAEFV-STPELAA--QSDFIVVACSLTPATEGLC 228 (330)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTCCEE--EEESSSCCHHHHHTTTCEEC-CHHHHHH--HCSEEEECCCCCTTTTTCB
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCCCcchhHHHhcCceeC-CHHHHHh--hCCEEEEeCCCChHHHHhh
Confidence 467999999 9999999999999999988 7776542111 1244433 8888887 7999999999753 23332
Q ss_pred -HH---HHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 134 -ME---AMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 134 -~e---Aie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
.+ .++.| ..+|+++.| +..|...|.++.
T Consensus 229 ~~~~~~~mk~g-ailIn~srg-~~v~~~aL~~aL 260 (330)
T 2gcg_A 229 NKDFFQKMKET-AVFINISRG-DVVNQDDLYQAL 260 (330)
T ss_dssp SHHHHHHSCTT-CEEEECSCG-GGBCHHHHHHHH
T ss_pred CHHHHhcCCCC-cEEEECCCC-cccCHHHHHHHH
Confidence 12 22223 356675666 333334444433
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00052 Score=59.01 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=66.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~- 133 (182)
.++|.|+|+ |+||+.+++.+...|++|+ ++|+...... ..|+.. .+++|+.+ ++|++++.+|... ...++
T Consensus 142 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~--~~d~~~~~~~~~~~g~~~-~~l~ell~--~aDvVvl~~P~~~~t~~li~ 215 (313)
T 2ekl_A 142 GKTIGIVGF-GRIGTKVGIIANAMGMKVL--AYDILDIREKAEKINAKA-VSLEELLK--NSDVISLHVTVSKDAKPIID 215 (313)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHTTCEEE--EECSSCCHHHHHHTTCEE-CCHHHHHH--HCSEEEECCCCCTTSCCSBC
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE--EECCCcchhHHHhcCcee-cCHHHHHh--hCCEEEEeccCChHHHHhhC
Confidence 467999998 9999999999999999998 7887653211 134543 48899888 7999999999644 22222
Q ss_pred HHH---HHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 MEA---MEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 ~eA---ie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++. ++.| ..+|+++.| +.-|...|.++.+.
T Consensus 216 ~~~l~~mk~g-a~lIn~arg-~~vd~~aL~~aL~~ 248 (313)
T 2ekl_A 216 YPQFELMKDN-VIIVNTSRA-VAVNGKALLDYIKK 248 (313)
T ss_dssp HHHHHHSCTT-EEEEESSCG-GGBCHHHHHHHHHT
T ss_pred HHHHhcCCCC-CEEEECCCC-cccCHHHHHHHHHc
Confidence 122 2222 346665565 45555556665544
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.80 E-value=3.8e-05 Score=63.91 Aligned_cols=93 Identities=9% Similarity=-0.014 Sum_probs=58.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+||.|+|+ |+||+.+++.+.+. .+|+ ...++....- . ..|. ++.+++++.+ ++|++++.+|+....+++.
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~-~~v~-~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~--~~DvVilav~~~~~~~v~~ 76 (276)
T 2i76_A 3 LVLNFVGT-GTLTRFFLECLKDR-YEIG-YILSRSIDRARNLAEVYGG-KAATLEKHPE--LNGVVFVIVPDRYIKTVAN 76 (276)
T ss_dssp -CCEEESC-CHHHHHHHHTTC-----CC-CEECSSHHHHHHHHHHTCC-CCCSSCCCCC-----CEEECSCTTTHHHHHT
T ss_pred ceEEEEeC-CHHHHHHHHHHHHc-CcEE-EEEeCCHHHHHHHHHHcCC-ccCCHHHHHh--cCCEEEEeCChHHHHHHHH
Confidence 57999998 99999999877765 6775 4455543110 0 1245 7777877666 6899999999999888876
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHH
Q 030169 135 EAMEAELDLVVCITEGIPQHDMVI 158 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~~eD~~~ 158 (182)
+.. ..=+.|+.++.+++.+.+..
T Consensus 77 ~l~-~~~~ivi~~s~~~~~~~l~~ 99 (276)
T 2i76_A 77 HLN-LGDAVLVHCSGFLSSEIFKK 99 (276)
T ss_dssp TTC-CSSCCEEECCSSSCGGGGCS
T ss_pred Hhc-cCCCEEEECCCCCcHHHHHH
Confidence 654 22235666566888876543
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00087 Score=58.04 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=65.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-ME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~-~e 135 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ ++|+..... ....--|.+++|+.+ ++|++++.+|... ...++ ++
T Consensus 146 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~--~~d~~~~~~-~~~~~~~~~l~ell~--~aDvV~~~~p~t~~t~~li~~~ 219 (331)
T 1xdw_A 146 NCTVGVVGL-GRIGRVAAQIFHGMGATVI--GEDVFEIKG-IEDYCTQVSLDEVLE--KSDIITIHAPYIKENGAVVTRD 219 (331)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCCS-CTTTCEECCHHHHHH--HCSEEEECCCCCTTTCCSBCHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCCccHH-HHhccccCCHHHHHh--hCCEEEEecCCchHHHHHhCHH
Confidence 457999999 9999999999999999988 777765321 112223568999888 7999999999642 22322 22
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 136 AMEA-EL-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 136 Aie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.++. +- ..+|+++.| +.-|...|.++.+.
T Consensus 220 ~l~~mk~ga~lin~srg-~~vd~~aL~~aL~~ 250 (331)
T 1xdw_A 220 FLKKMKDGAILVNCARG-QLVDTEAVIEAVES 250 (331)
T ss_dssp HHHTSCTTEEEEECSCG-GGBCHHHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCc-ccccHHHHHHHHHh
Confidence 3332 22 245665555 44455555555543
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.003 Score=56.26 Aligned_cols=87 Identities=11% Similarity=0.069 Sum_probs=61.7
Q ss_pred CceEEEEccCCCCchhhhH-HHHHhC---CceEEeeccCCCCCeEec---C--ccccc--cHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTE-QAIEYG---TKMVVGGVTPKKGGTEHL---G--LPVFN--SVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k-~~~~~g---~~IV~AgVdp~~~G~~i~---G--vPVy~--Sv~ea~~~~~~DvaVdfVpp 126 (182)
.+||.|+|+||--|+++.+ .+.+.. .+++ . +.....|+.+. | +++.+ +.++ .+ ++|+++..+|.
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~-~-~ss~~aG~~~~~~~~~~~~v~~~~~~~~-~~--~vDvvf~a~~~ 78 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPV-F-FSTSNAGGKAPSFAKNETTLKDATSIDD-LK--KCDVIITCQGG 78 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEE-E-EESSCTTSBCCTTCCSCCBCEETTCHHH-HH--TCSEEEECSCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEE-E-EechhcCCCHHHcCCCceEEEeCCChhH-hc--CCCEEEECCCh
Confidence 4789999999999999999 777655 5666 3 33335565432 1 23332 1222 34 79999999999
Q ss_pred HHHHHHHHHHHHcCCC-EEEEeCC
Q 030169 127 PFAAAAIMEAMEAELD-LVVCITE 149 (182)
Q Consensus 127 ~av~~a~~eAie~GIk-~VV~iTe 149 (182)
....+.+..++++|.+ .||=.+.
T Consensus 79 ~~s~~~~~~~~~~G~k~~VID~ss 102 (377)
T 3uw3_A 79 DYTNDVFPKLRAAGWNGYWIDAAS 102 (377)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECSS
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999999999999985 4544343
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00051 Score=60.47 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=67.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~ 133 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ +.|+.....+ ..|+..+.+++|+.+ ++|++++.+|-. .+..++
T Consensus 164 gktvGIIG~-G~IG~~vA~~l~~~G~~V~--~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~Plt~~t~~li 238 (351)
T 3jtm_A 164 GKTIGTVGA-GRIGKLLLQRLKPFGCNLL--YHDRLQMAPELEKETGAKFVEDLNEMLP--KCDVIVINMPLTEKTRGMF 238 (351)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGCCEEE--EECSSCCCHHHHHHHCCEECSCHHHHGG--GCSEEEECSCCCTTTTTCB
T ss_pred CCEEeEEEe-CHHHHHHHHHHHHCCCEEE--EeCCCccCHHHHHhCCCeEcCCHHHHHh--cCCEEEECCCCCHHHHHhh
Confidence 467999999 9999999999999999988 7887642211 136666789999998 799999999953 333332
Q ss_pred -HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 134 -MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 134 -~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.+.++. +- ..+|+++.|=. -|...|.++.+
T Consensus 239 ~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~ 271 (351)
T 3jtm_A 239 NKELIGKLKKGVLIVNNARGAI-MERQAVVDAVE 271 (351)
T ss_dssp SHHHHHHSCTTEEEEECSCGGG-BCHHHHHHHHH
T ss_pred cHHHHhcCCCCCEEEECcCchh-hCHHHHHHHHH
Confidence 222222 22 24667555544 44444444443
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0014 Score=53.84 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee--cCcccc------------ccHHHHHhc-cCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH--LGLPVF------------NSVAEAKAE-TKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i--~GvPVy------------~Sv~ea~~~-~~~DvaVd 122 (182)
+||.|+|+ |.||+.++..+.+.|.+|+ .+++...-- .+ .|+.+. .+.+|+.+. .++|++++
T Consensus 4 m~i~iiG~-G~~G~~~a~~l~~~g~~V~--~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 4 MKIAIAGA-GAMGSRLGIMLHQGGNDVT--LIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEE
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCcEE--EEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEE
Confidence 68999998 9999999999998898887 555532100 00 122111 122333221 16899999
Q ss_pred eeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCH
Q 030169 123 YVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQ 153 (182)
Q Consensus 123 fVpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~ 153 (182)
.+|+....+++++.... + =..|+.++.|++.
T Consensus 81 ~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~ 113 (316)
T 2ew2_A 81 LTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH 113 (316)
T ss_dssp CSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred EeccccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 99999888888765443 1 2356666789875
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00063 Score=58.81 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=68.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
.++|.|+|+ |+||+.+++.+...|.+|+ ++|+....+. ..|+. +.+++++++ ++|++++.+|... ...++.
T Consensus 150 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~--~~d~~~~~~~~~~~g~~-~~~l~~~l~--~aDvVil~vp~~~~t~~~i~ 223 (334)
T 2dbq_A 150 GKTIGIIGL-GRIGQAIAKRAKGFNMRIL--YYSRTRKEEVERELNAE-FKPLEDLLR--ESDFVVLAVPLTRETYHLIN 223 (334)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCHHHHHHHCCE-ECCHHHHHH--HCSEEEECCCCCTTTTTCBC
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhCCCEEE--EECCCcchhhHhhcCcc-cCCHHHHHh--hCCEEEECCCCChHHHHhhC
Confidence 367999998 9999999999999999988 7777653211 12454 458888887 7999999999876 333331
Q ss_pred -HHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 135 -EAMEA-E-LDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 135 -eAie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+.++. . =..+++++.|-... ...|.++.+.-.+
T Consensus 224 ~~~~~~mk~~ailIn~srg~~v~-~~aL~~aL~~~~i 259 (334)
T 2dbq_A 224 EERLKLMKKTAILINIARGKVVD-TNALVKALKEGWI 259 (334)
T ss_dssp HHHHHHSCTTCEEEECSCGGGBC-HHHHHHHHHHTSS
T ss_pred HHHHhcCCCCcEEEECCCCcccC-HHHHHHHHHhCCe
Confidence 22222 1 23567766665444 3444444443344
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0024 Score=56.77 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCchhhhH-HHHHhC---CceEEeeccCCCCCeEec---C--cccccc--HHHHHhccCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTE-QAIEYG---TKMVVGGVTPKKGGTEHL---G--LPVFNS--VAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k-~~~~~g---~~IV~AgVdp~~~G~~i~---G--vPVy~S--v~ea~~~~~~DvaVdfVpp~ 127 (182)
+||.|+|+||--|+++.+ .+.+.. .+++ . +.....|+.+. | +++.+. .++ .+ ++|+++..+|..
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~-~-~ss~~aG~~~~~~~~~~~~~~~~~~~~~-~~--~~Dvvf~a~~~~ 75 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPV-F-FSTSQIGVPAPNFGKDAGMLHDAFDIES-LK--QLDAVITCQGGS 75 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEE-E-EESSSTTSBCCCSSSCCCBCEETTCHHH-HT--TCSEEEECSCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEE-E-EeccccCcCHHHhCCCceEEEecCChhH-hc--cCCEEEECCChH
Confidence 589999999999999999 777655 5666 3 33333565432 2 233321 222 34 799999999999
Q ss_pred HHHHHHHHHHHcCCC-EEEEeC
Q 030169 128 FAAAAIMEAMEAELD-LVVCIT 148 (182)
Q Consensus 128 av~~a~~eAie~GIk-~VV~iT 148 (182)
...+.+..++++|.+ .||-.+
T Consensus 76 ~s~~~~~~~~~~G~k~~VID~s 97 (370)
T 3pzr_A 76 YTEKVYPALRQAGWKGYWIDAA 97 (370)
T ss_dssp HHHHHHHHHHHTTCCCEEEECS
T ss_pred HHHHHHHHHHHCCCCEEEEeCC
Confidence 999999999999985 454433
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00039 Score=57.51 Aligned_cols=90 Identities=10% Similarity=0.057 Sum_probs=60.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-----C-CceEEeeccCCCCCeE--e-cCcccc--------------ccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-----G-TKMVVGGVTPKKGGTE--H-LGLPVF--------------NSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-----g-~~IV~AgVdp~~~G~~--i-~GvPVy--------------~Sv~ea~~~~ 115 (182)
+||.|+|+ |.||..++..+.+. | .+|. .+++...-+. . .|+.+. ++. +..+
T Consensus 9 m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~--~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~-- 82 (317)
T 2qyt_A 9 IKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVS--WIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVG-- 82 (317)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEE--EECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHC--
T ss_pred CEEEEECc-CHHHHHHHHHHHhCccccCCCCCEE--EEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccC--
Confidence 68999998 99999999988887 7 7777 5554210000 0 233332 333 3344
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHH
Q 030169 116 KANASVIYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQH 154 (182)
Q Consensus 116 ~~DvaVdfVpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~e 154 (182)
++|++++.||+..+.+++++.... + =..||.++.|+..+
T Consensus 83 ~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~ 123 (317)
T 2qyt_A 83 TVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIA 123 (317)
T ss_dssp CEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHH
T ss_pred CCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcH
Confidence 789999999999988887665432 1 12466668998764
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00075 Score=57.85 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=66.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~- 133 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ ++|+...... ..|+.. .+++|+.+ ++|++++.+|... ...++
T Consensus 142 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~--~~d~~~~~~~~~~~g~~~-~~l~ell~--~aDvV~l~~p~~~~t~~li~ 215 (307)
T 1wwk_A 142 GKTIGIIGF-GRIGYQVAKIANALGMNIL--LYDPYPNEERAKEVNGKF-VDLETLLK--ESDVVTIHVPLVESTYHLIN 215 (307)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCHHHHHHTTCEE-CCHHHHHH--HCSEEEECCCCSTTTTTCBC
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCCCEEE--EECCCCChhhHhhcCccc-cCHHHHHh--hCCEEEEecCCChHHhhhcC
Confidence 457999999 9999999999999999998 7887653210 135543 47889888 7999999999654 23222
Q ss_pred HHHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 MEAMEA-E-LDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 ~eAie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++.++. + =..+|+++.| +.-|...|.++.+.
T Consensus 216 ~~~l~~mk~ga~lin~arg-~~vd~~aL~~aL~~ 248 (307)
T 1wwk_A 216 EERLKLMKKTAILINTSRG-PVVDTNALVKALKE 248 (307)
T ss_dssp HHHHHHSCTTCEEEECSCG-GGBCHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEECCCC-cccCHHHHHHHHHh
Confidence 122222 1 2356775665 44444555554443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00068 Score=58.76 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=66.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-ME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~-~e 135 (182)
.++|.|+|+ |+||+.+++.+..+|++|+ ++|+.........+...++++|+.+ +.|++++.+|... ...++ ++
T Consensus 146 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~--~~d~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~~p~~~~t~~li~~~ 220 (333)
T 1j4a_A 146 DQVVGVVGT-GHIGQVFMQIMEGFGAKVI--TYDIFRNPELEKKGYYVDSLDDLYK--QADVISLHVPDVPANVHMINDE 220 (333)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCHHHHHTTCBCSCHHHHHH--HCSEEEECSCCCGGGTTCBSHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHCCCEEE--EECCCcchhHHhhCeecCCHHHHHh--hCCEEEEcCCCcHHHHHHHhHH
Confidence 357999999 9999999999999999998 7887653210112333448899888 7999999999543 22222 12
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 136 AMEA-EL-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 136 Aie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.++. +- ..+|+++.| +.-|...|.++.+.
T Consensus 221 ~l~~mk~ga~lIn~arg-~~vd~~aL~~aL~~ 251 (333)
T 1j4a_A 221 SIAKMKQDVVIVNVSRG-PLVDTDAVIRGLDS 251 (333)
T ss_dssp HHHHSCTTEEEEECSCG-GGBCHHHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCC-cccCHHHHHHHHHh
Confidence 2222 22 246665555 44555566665544
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0017 Score=58.72 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=66.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-ME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~-~e 135 (182)
.++|.|+|. |++|+.+++.+..+|++|+ +.|+...- ...+...+.+++|+.+ ++|++++.+|... +...+ .+
T Consensus 156 gktvGIIGl-G~IG~~vA~~l~~~G~~V~--~yd~~~~~-~~~~~~~~~sl~ell~--~aDvV~lhvPlt~~T~~li~~~ 229 (416)
T 3k5p_A 156 GKTLGIVGY-GNIGSQVGNLAESLGMTVR--YYDTSDKL-QYGNVKPAASLDELLK--TSDVVSLHVPSSKSTSKLITEA 229 (416)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECTTCCC-CBTTBEECSSHHHHHH--HCSEEEECCCC-----CCBCHH
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE--EECCcchh-cccCcEecCCHHHHHh--hCCEEEEeCCCCHHHhhhcCHH
Confidence 457999998 9999999999999999999 88876422 2234555788999998 7999999999754 33333 22
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 136 AMEA-EL-DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 136 Aie~-GI-k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.++. +- ..+|+++.|-.+ |...|.++.+
T Consensus 230 ~l~~mk~gailIN~aRG~vv-d~~aL~~aL~ 259 (416)
T 3k5p_A 230 KLRKMKKGAFLINNARGSDV-DLEALAKVLQ 259 (416)
T ss_dssp HHHHSCTTEEEEECSCTTSB-CHHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCChhh-hHHHHHHHHH
Confidence 3332 22 246776666554 4444444443
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0038 Score=48.49 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e--cCcccc-ccHH----HHHhccCCcEEEEeeCh----
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H--LGLPVF-NSVA----EAKAETKANASVIYVPP---- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i--~GvPVy-~Sv~----ea~~~~~~DvaVdfVpp---- 126 (182)
|||+|.|++|..|+.+++.+.+.|.+|+ + ++......+ . .++.++ -++. ++.+ ++|++|.....
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~-~-~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~--~~d~vi~~ag~~~~~ 76 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVL-A-VVRDPQKAADRLGATVATLVKEPLVLTEADLD--SVDAVVDALSVPWGS 76 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EESCHHHHHHHTCTTSEEEECCGGGCCHHHHT--TCSEEEECCCCCTTS
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEE-E-EEecccccccccCCCceEEecccccccHhhcc--cCCEEEECCccCCCc
Confidence 5799999999999999999999999988 4 333211000 0 112111 1121 4445 78999988744
Q ss_pred -------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 -------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 -------~av~~a~~eAie~GIk~VV~iT 148 (182)
..+..+++.|.++| +.+|.++
T Consensus 77 ~~~~~n~~~~~~l~~a~~~~~-~~~v~~S 104 (224)
T 3h2s_A 77 GRGYLHLDFATHLVSLLRNSD-TLAVFIL 104 (224)
T ss_dssp SCTHHHHHHHHHHHHTCTTCC-CEEEEEC
T ss_pred chhhHHHHHHHHHHHHHHHcC-CcEEEEe
Confidence 45566777777789 6666654
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00078 Score=61.81 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=69.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~~ 134 (182)
.++|.|+|+ |++|+.+++.+...|++|+ +.||...... ..|+... +++|+.+ ++|++++.+|.. ....++.
T Consensus 142 g~~vgIIG~-G~IG~~vA~~l~~~G~~V~--~~d~~~~~~~a~~~g~~~~-~l~e~~~--~aDvV~l~~P~~~~t~~~i~ 215 (529)
T 1ygy_A 142 GKTVGVVGL-GRIGQLVAQRIAAFGAYVV--AYDPYVSPARAAQLGIELL-SLDDLLA--RADFISVHLPKTPETAGLID 215 (529)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE--EECTTSCHHHHHHHTCEEC-CHHHHHH--HCSEEEECCCCSTTTTTCBC
T ss_pred CCEEEEEee-CHHHHHHHHHHHhCCCEEE--EECCCCChhHHHhcCcEEc-CHHHHHh--cCCEEEECCCCchHHHHHhC
Confidence 367999998 9999999999999999998 7888652211 1255544 7889888 799999999998 6666665
Q ss_pred HHHHcCCC---EEEEeCCCCCHHHHHHHHHHhc
Q 030169 135 EAMEAELD---LVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 135 eAie~GIk---~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+.+-...+ .++.++.|-... ...|.++.+
T Consensus 216 ~~~~~~~k~g~ilin~arg~iv~-~~aL~~al~ 247 (529)
T 1ygy_A 216 KEALAKTKPGVIIVNAARGGLVD-EAALADAIT 247 (529)
T ss_dssp HHHHTTSCTTEEEEECSCTTSBC-HHHHHHHHH
T ss_pred HHHHhCCCCCCEEEECCCCchhh-HHHHHHHHH
Confidence 42322232 466666665544 444444433
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0057 Score=50.24 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=58.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--Ee--------cCccccccHHHHHhccCCcEEEEeeCh--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EH--------LGLPVFNSVAEAKAETKANASVIYVPP-- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i--------~GvPVy~Sv~ea~~~~~~DvaVdfVpp-- 126 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+ + ++...... .+ .++--..+++++.++.++|++|.....
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~ 79 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLSVV-V-VDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSL 79 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEE-E-EeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccC
Confidence 5799999999999999999999999988 4 43322110 01 122222335566654578998887532
Q ss_pred ----------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 ----------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ----------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
.....+++.|.+.|++.+|.+++
T Consensus 80 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 118 (330)
T 2c20_A 80 VGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118 (330)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 12345667777889987776564
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0024 Score=58.89 Aligned_cols=87 Identities=10% Similarity=0.009 Sum_probs=63.7
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHh-CC---ceEEeeccCCCCCeEec---Ccccc------ccHHH----HHhccC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEY-GT---KMVVGGVTPKKGGTEHL---GLPVF------NSVAE----AKAETK 116 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~-g~---~IV~AgVdp~~~G~~i~---GvPVy------~Sv~e----a~~~~~ 116 (182)
.++-..||+|+|+ |.+|+.++..+.+. ++ +|+ .+|+.+.+.+.. |+++. +++++ +++ +
T Consensus 9 ~~~~~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~--vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~--~ 83 (480)
T 2ph5_A 9 KILFKNRFVILGF-GCVGQALMPLIFEKFDIKPSQVT--IIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLE--E 83 (480)
T ss_dssp CBCCCSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEE--EEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCC--T
T ss_pred eecCCCCEEEECc-CHHHHHHHHHHHhCCCCceeEEE--EeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhc--C
Confidence 4455788999998 99999999988754 44 677 557665543321 43333 33433 444 3
Q ss_pred CcEEEEeeChHHHHHHHHHHHHcCCCEEE
Q 030169 117 ANASVIYVPPPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 117 ~DvaVdfVpp~av~~a~~eAie~GIk~VV 145 (182)
.|++|..+++....++++.|+++|+.-+=
T Consensus 84 ~DvVIN~s~~~~~l~Im~acleaGv~YlD 112 (480)
T 2ph5_A 84 NDFLIDVSIGISSLALIILCNQKGALYIN 112 (480)
T ss_dssp TCEEEECCSSSCHHHHHHHHHHHTCEEEE
T ss_pred CCEEEECCccccCHHHHHHHHHcCCCEEE
Confidence 59999999999999999999999998753
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0017 Score=52.32 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=58.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCC-eEe--cCccc-------cccHHHHHhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGG-TEH--LGLPV-------FNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G-~~i--~GvPV-------y~Sv~ea~~~~~~DvaVdfVpp 126 (182)
++|+|.|++|..|+.+++.+.+. |.+|+ + ++..... .+. .++.+ ..++.++++ ++|+++....+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~-~-~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~ 76 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQII-A-IVRNVEKASTLADQGVEVRHGDYNQPESLQKAFA--GVSKLLFISGP 76 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEE-E-EESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECCCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEE-E-EEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHh--cCCEEEEcCCC
Confidence 36999999999999999999987 88888 4 3332211 000 12222 233555565 78999887643
Q ss_pred --------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 --------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 --------~av~~a~~eAie~GIk~VV~iTe 149 (182)
..+..+++.|.++|++.+|.+++
T Consensus 77 ~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 77 HYDNTLLIVQHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CcCchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 34567778888899988776554
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=53.60 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=58.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH-----------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP----------- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~----------- 127 (182)
+||+|.|++|..|+.+++.+.+.|.+|+ +++... + ++-=.+++++++++.++|+++......
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~--~~~r~~-~----D~~d~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~ 78 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIY--PFDKKL-L----DITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDL 78 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEE--EECTTT-S----CTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEE--Eecccc-c----CCCCHHHHHHHHHhcCCCEEEECCcccChHHHhcCHHH
Confidence 4799999999999999999999898888 555533 2 233345577777765799998774321
Q ss_pred -------HHHHHHHHHHHcCCCEEEE
Q 030169 128 -------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 -------av~~a~~eAie~GIk~VV~ 146 (182)
.+..+++.|.++|++.|.+
T Consensus 79 ~~~~n~~~~~~l~~~~~~~~~~~v~~ 104 (287)
T 3sc6_A 79 AYVINAIGARNVAVASQLVGAKLVYI 104 (287)
T ss_dssp HHHHHTHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1355778888889975544
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0021 Score=56.51 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=63.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+||.|+|+||--|+.+.+.+.+.. .+++ ........|+.+. .+++-+.-.+..+ ++|+++..+|.....+
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~-~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~a~~~~~s~~ 78 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVR-FFASARSQGRKLAFRGQEIEVEDAETADPS--GLDIALFSAGSAMSKV 78 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEE-EEECTTTSSCEEEETTEEEEEEETTTSCCT--TCSEEEECSCHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEE-EEECcccCCCceeecCCceEEEeCCHHHhc--cCCEEEECCChHHHHH
Confidence 589999999999999999888763 5666 5555666676543 1222211111223 7899999999999999
Q ss_pred HHHHHHHcCCCEEEEeCC
Q 030169 132 AIMEAMEAELDLVVCITE 149 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTe 149 (182)
.+..++++|.+.|-. +.
T Consensus 79 ~a~~~~~~G~~vID~-Sa 95 (344)
T 3tz6_A 79 QAPRFAAAGVTVIDN-SS 95 (344)
T ss_dssp HHHHHHHTTCEEEEC-SS
T ss_pred HHHHHHhCCCEEEEC-CC
Confidence 999999999976655 54
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0035 Score=50.46 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=58.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec-------CccccccHHHHHhccCCcEEEEeeCh-----
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL-------GLPVFNSVAEAKAETKANASVIYVPP----- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~-------GvPVy~Sv~ea~~~~~~DvaVdfVpp----- 126 (182)
++|+|.|++|..|+.+++.+.+.|.+|+ +++......... ++-=..++.++.+ ++|+++.....
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~~~~ 78 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVR--LSDIVDLGAAEAHEEIVACDLADAQAVHDLVK--DCDGIIHLGGVSVERP 78 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEE--ECCSSCCCCCCTTEEECCCCTTCHHHHHHHHT--TCSEEEECCSCCSCCC
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEE--EEeCCCccccCCCccEEEccCCCHHHHHHHHc--CCCEEEECCcCCCCCC
Confidence 4799999999999999999999898888 444433211111 2222233556666 79999987432
Q ss_pred ---------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 ---------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ---------~av~~a~~eAie~GIk~VV~iTe 149 (182)
.....+++.|.++|++.+|.+++
T Consensus 79 ~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 110 (267)
T 3ay3_A 79 WNDILQANIIGAYNLYEAARNLGKPRIVFASS 110 (267)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 23466777888889988776553
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0062 Score=50.67 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=59.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--Ee---cC-------ccccccHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EH---LG-------LPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i---~G-------vPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ + ++....+. .. .+ +-=..+++++.+..++|++|....
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~ 98 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGDKVV-G-IDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAA 98 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEE-E-EECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECce
Confidence 36899999999999999999999999988 4 33322110 00 12 222233556666445999997653
Q ss_pred h---------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 126 P---------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 126 p---------------~av~~a~~eAie~GIk~VV~iT 148 (182)
. .....+++.|.+.|++.+|.++
T Consensus 99 ~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~S 136 (333)
T 2q1w_A 99 SYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQ 136 (333)
T ss_dssp CCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEE
T ss_pred ecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 2 2345677888888997777655
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0061 Score=50.20 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=57.6
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe------------Ee----cCccccccHHHHHhccCCcE
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT------------EH----LGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~------------~i----~GvPVy~Sv~ea~~~~~~Dv 119 (182)
.+.++|+|.|++|-.|+.+++.+.+.|.+|+ + ++...... .+ .++-=..+++++++..++|+
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 89 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVH-G-LVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQE 89 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEE-E-EeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCE
Confidence 4678999999999999999999999999988 4 33322110 01 12222234566666546899
Q ss_pred EEEeeCh----------H--------HHHHHHHHHHHcCC-CEEEEeC
Q 030169 120 SVIYVPP----------P--------FAAAAIMEAMEAEL-DLVVCIT 148 (182)
Q Consensus 120 aVdfVpp----------~--------av~~a~~eAie~GI-k~VV~iT 148 (182)
+|-.... . .+..+++.|.+.|+ +.+|.++
T Consensus 90 Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S 137 (335)
T 1rpn_A 90 VYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS 137 (335)
T ss_dssp EEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred EEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 9876532 1 23456777778886 6666544
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00078 Score=58.59 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH-H
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI-M 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~-~ 134 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ ++|+.....+ ....-.+.+++|+.+ ++|++++.+|.. .+...+ .
T Consensus 137 gktvGIiGl-G~IG~~vA~~l~~~G~~V~--~~dr~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~lPlt~~t~~li~~ 211 (324)
T 3evt_A 137 GQQLLIYGT-GQIGQSLAAKASALGMHVI--GVNTTGHPADHFHETVAFTATADALA--TANFIVNALPLTPTTHHLFST 211 (324)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EEESSCCCCTTCSEEEEGGGCHHHHH--HCSEEEECCCCCGGGTTCBSH
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCEEE--EECCCcchhHhHhhccccCCHHHHHh--hCCEEEEcCCCchHHHHhcCH
Confidence 357999999 9999999999999999999 7776542211 111223568899988 799999999943 344443 2
Q ss_pred HHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 135 EAMEA-E-LDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 135 eAie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+.++. + =..+|+++.|=.+. ...|.++-+
T Consensus 212 ~~l~~mk~gailIN~aRG~~vd-~~aL~~aL~ 242 (324)
T 3evt_A 212 ELFQQTKQQPMLINIGRGPAVD-TTALMTALD 242 (324)
T ss_dssp HHHHTCCSCCEEEECSCGGGBC-HHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcCCChhhh-HHHHHHHHH
Confidence 33332 1 23577755555444 444444433
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00068 Score=59.10 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=65.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChH-HHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~~e 135 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ +.|+..... ...+.-.+.+++|+.+ +.|++++.+|.. .+..++.+
T Consensus 140 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~--~~dr~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~ 214 (324)
T 3hg7_A 140 GRTLLILGT-GSIGQHIAHTGKHFGMKVL--GVSRSGRERAGFDQVYQLPALNKMLA--QADVIVSVLPATRETHHLFTA 214 (324)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCCCTTCSEEECGGGHHHHHH--TCSEEEECCCCCSSSTTSBCT
T ss_pred cceEEEEEE-CHHHHHHHHHHHhCCCEEE--EEcCChHHhhhhhcccccCCHHHHHh--hCCEEEEeCCCCHHHHHHhHH
Confidence 467999999 9999999999999999999 777654211 1122233678999998 899999999953 23333322
Q ss_pred HHHcCC---CEEEEeCCCCCHHHHHHHHHH
Q 030169 136 AMEAEL---DLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 136 Aie~GI---k~VV~iTeG~~~eD~~~l~~~ 162 (182)
..-... ..+|+++.|=.+.+...+.++
T Consensus 215 ~~l~~mk~gailIN~aRG~~vde~aL~~aL 244 (324)
T 3hg7_A 215 SRFEHCKPGAILFNVGRGNAINEGDLLTAL 244 (324)
T ss_dssp TTTTCSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred HHHhcCCCCcEEEECCCchhhCHHHHHHHH
Confidence 211222 357775666555444444443
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.011 Score=45.29 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=58.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeEecCcc-ccccHHHH---HhccCCcEEEEeeChH----
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTEHLGLP-VFNSVAEA---KAETKANASVIYVPPP---- 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~i~GvP-Vy~Sv~ea---~~~~~~DvaVdfVpp~---- 127 (182)
.++|+|.|++|..|+.+++.+.+.|. +|+ +++..... ...++. +.-++.+. .+.. +|+++......
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~--~~~r~~~~-~~~~~~~~~~D~~~~~~~~~~~-~d~vi~~a~~~~~~~ 80 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI--APARKALA-EHPRLDNPVGPLAELLPQLDGS-IDTAFCCLGTTIKEA 80 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE--CCBSSCCC-CCTTEECCBSCHHHHGGGCCSC-CSEEEECCCCCHHHH
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCCeEE--EEeCCCcc-cCCCceEEeccccCHHHHHHhh-hcEEEECeeeccccC
Confidence 46899999999999999999999886 888 44443322 122222 22344432 2222 89998876432
Q ss_pred ------------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 128 ------------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 128 ------------av~~a~~eAie~GIk~VV~iTe 149 (182)
....+++.|.+.|++.+|.+++
T Consensus 81 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 114 (215)
T 2a35_A 81 GSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSA 114 (215)
T ss_dssp SSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECC
Confidence 3456777888889987776664
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00035 Score=61.43 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=67.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ +.|+..... ...|+..+++++|+.+ +.|++++.+|... +...+.
T Consensus 160 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~--~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li~ 234 (352)
T 3gg9_A 160 GQTLGIFGY-GKIGQLVAGYGRAFGMNVL--VWGRENSKERARADGFAVAESKDALFE--QSDVLSVHLRLNDETRSIIT 234 (352)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCCCSTTTTTCBC
T ss_pred CCEEEEEeE-CHHHHHHHHHHHhCCCEEE--EECCCCCHHHHHhcCceEeCCHHHHHh--hCCEEEEeccCcHHHHHhhC
Confidence 467999999 9999999999999999999 788764111 1246776779999998 7999999999543 333332
Q ss_pred HHHHcCC---CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 135 EAMEAEL---DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 135 eAie~GI---k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+..-... ..+|+++.|=.+ |...|.++.+
T Consensus 235 ~~~l~~mk~gailIN~aRg~~v-d~~aL~~aL~ 266 (352)
T 3gg9_A 235 VADLTRMKPTALFVNTSRAELV-EENGMVTALN 266 (352)
T ss_dssp HHHHTTSCTTCEEEECSCGGGB-CTTHHHHHHH
T ss_pred HHHHhhCCCCcEEEECCCchhh-cHHHHHHHHH
Confidence 2222222 356775554444 4444444443
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0048 Score=50.20 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=57.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE--------ecCccccccHHHHHhccCCcEEEEeeCh--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE--------HLGLPVFNSVAEAKAETKANASVIYVPP-- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~--------i~GvPVy~Sv~ea~~~~~~DvaVdfVpp-- 126 (182)
++|+|.|++|..|+.+++.+.+. |.+|+ +++......+ ..++-=..+++++.++.++|+++.....
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~--~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~ 80 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVI--ASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLS 80 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEE--EEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCH
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEE--EEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccCC
Confidence 67999999999999999999987 78888 4443322111 0122222345666665579999987542
Q ss_pred ---------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 ---------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ---------------~av~~a~~eAie~GIk~VV~iT 148 (182)
.....+++.|.+.|++.+|.++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 117 (312)
T 2yy7_A 81 ATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPS 117 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCE
T ss_pred CchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 1234566777778997776544
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=57.21 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=66.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI-ME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~-~e 135 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ ++|+.... ...+.--|.+++|+.+ +.|++++.+|-. .+..++ .+
T Consensus 148 gktvgIiGl-G~IG~~vA~~l~~~G~~V~--~~d~~~~~-~~~~~~~~~~l~ell~--~aDvV~l~~Plt~~t~~li~~~ 221 (343)
T 2yq5_A 148 NLTVGLIGV-GHIGSAVAEIFSAMGAKVI--AYDVAYNP-EFEPFLTYTDFDTVLK--EADIVSLHTPLFPSTENMIGEK 221 (343)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCG-GGTTTCEECCHHHHHH--HCSEEEECCCCCTTTTTCBCHH
T ss_pred CCeEEEEec-CHHHHHHHHHHhhCCCEEE--EECCChhh-hhhccccccCHHHHHh--cCCEEEEcCCCCHHHHHHhhHH
Confidence 357999999 9999999999999999999 88887532 2222233558999998 799999999942 222222 12
Q ss_pred HHHc-C-CCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 136 AMEA-E-LDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 136 Aie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.++. + =..+|+++.|=.+ |...|.++.+.
T Consensus 222 ~l~~mk~gailIN~aRg~~v-d~~aL~~aL~~ 252 (343)
T 2yq5_A 222 QLKEMKKSAYLINCARGELV-DTGALIKALQD 252 (343)
T ss_dssp HHHHSCTTCEEEECSCGGGB-CHHHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCChhh-hHHHHHHHHHc
Confidence 2222 2 2356775555444 44444444443
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0069 Score=49.56 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=57.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--Ee-cCcc-------ccccHHHHHhccCCcEEEEeeCh--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EH-LGLP-------VFNSVAEAKAETKANASVIYVPP-- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i-~GvP-------Vy~Sv~ea~~~~~~DvaVdfVpp-- 126 (182)
|+|+|.|++|-.|+.+++.+.+.|.+|+ +++....+. .. .++. =..++++++++.++|+++.....
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~--~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~ 78 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVA--VLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQAS 78 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEE--EECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEE--EEECCCcCchhhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccC
Confidence 4799999999999999999999999988 444321111 00 1122 12335566654578998876432
Q ss_pred ----------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 ----------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ----------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
..+..+++.|.+.|++.+|.+++
T Consensus 79 ~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 117 (311)
T 2p5y_A 79 VKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFAST 117 (311)
T ss_dssp HHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 11345677777889888776554
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0061 Score=51.74 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=61.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CC-ceEEeeccCCCC------------CeE--ecCccccccHHHHHhccCCcEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GT-KMVVGGVTPKKG------------GTE--HLGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~-~IV~AgVdp~~~------------G~~--i~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
.++|+|.|++|..|+.+++.+.+. |. +|+ +++.... +-+ ..++-=..+++++.+ ++|+++
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~--~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D~Vi 96 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKII--VYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE--GVDICI 96 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCCSEEE--EEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT--TCSEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCCCEEE--EEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh--cCCEEE
Confidence 468999999999999999999988 86 888 4444321 100 113333344666666 799999
Q ss_pred EeeChH------------------HHHHHHHHHHHcCCCEEEEeCCC
Q 030169 122 IYVPPP------------------FAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 122 dfVpp~------------------av~~a~~eAie~GIk~VV~iTeG 150 (182)
-..... .+..+++.|.+.|++.+|.+++.
T Consensus 97 h~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~ 143 (344)
T 2gn4_A 97 HAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD 143 (344)
T ss_dssp ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG
T ss_pred ECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 876321 13567788888999988887763
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0046 Score=50.63 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=57.8
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE------ecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE------HLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~------i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
...+.++|+|.|++|-.|+.+++.+.+.|.+|+ + ++....... ..++-=..+++++++..++|++|-.....
T Consensus 8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~-~-~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~ 85 (321)
T 2pk3_A 8 HHHGSMRALITGVAGFVGKYLANHLTEQNVEVF-G-TSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS 85 (321)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred cccCcceEEEECCCChHHHHHHHHHHHCCCEEE-E-EecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence 345678899999999999999999999999988 4 444332211 11222223466666644689999875421
Q ss_pred ------------------HHHHHHHHHHHc-CCCEEEEeCC
Q 030169 128 ------------------FAAAAIMEAMEA-ELDLVVCITE 149 (182)
Q Consensus 128 ------------------av~~a~~eAie~-GIk~VV~iTe 149 (182)
.+..+++.|.+. +++.+|.+++
T Consensus 86 ~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 126 (321)
T 2pk3_A 86 SVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGS 126 (321)
T ss_dssp CHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence 134556666554 5777776553
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.011 Score=44.18 Aligned_cols=89 Identities=11% Similarity=0.005 Sum_probs=57.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-----eE--ecCccccc-c------HHHH-HhccCCcEEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-----TE--HLGLPVFN-S------VAEA-KAETKANASVI 122 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-----~~--i~GvPVy~-S------v~ea-~~~~~~DvaVd 122 (182)
..+|+|+|+ |+.|+.+++.+.+.|.+++ .+++.... .+ ..|++++. + ++++ ++ ++|+++.
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~--vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~--~ad~vi~ 77 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVT--VISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGID--RCRAILA 77 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEE--EEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTT--TCSEEEE
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEE--EEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChh--hCCEEEE
Confidence 457999998 9999999999999998888 66664200 00 11344432 2 3333 33 7899999
Q ss_pred eeChHHHHHHH-HHHHHc-CCCEEEEeCCCC
Q 030169 123 YVPPPFAAAAI-MEAMEA-ELDLVVCITEGI 151 (182)
Q Consensus 123 fVpp~av~~a~-~eAie~-GIk~VV~iTeG~ 151 (182)
.++.......+ ..|.+. +...|++...+-
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 99876655444 444454 655666645443
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=58.83 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=67.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~~ 134 (182)
.++|.|+|. |++|+.+++.+..+|++|+ +.||...... ..|+. +.+++|+.+ +.|++++.+|.. .+..++.
T Consensus 176 gktvGIIGl-G~IG~~vA~~l~~fG~~V~--~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~Plt~~T~~li~ 249 (365)
T 4hy3_A 176 GSEIGIVGF-GDLGKALRRVLSGFRARIR--VFDPWLPRSMLEENGVE-PASLEDVLT--KSDFIFVVAAVTSENKRFLG 249 (365)
T ss_dssp SSEEEEECC-SHHHHHHHHHHTTSCCEEE--EECSSSCHHHHHHTTCE-ECCHHHHHH--SCSEEEECSCSSCC---CCC
T ss_pred CCEEEEecC-CcccHHHHHhhhhCCCEEE--EECCCCCHHHHhhcCee-eCCHHHHHh--cCCEEEEcCcCCHHHHhhcC
Confidence 357999998 9999999999999999999 7888642211 23554 578999999 899999999965 2333332
Q ss_pred -HHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 -EAMEA-E-LDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 -eAie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.++. + =..+|+++.| +.-|...|.++.+.
T Consensus 250 ~~~l~~mk~gailIN~aRG-~~vde~aL~~aL~~ 282 (365)
T 4hy3_A 250 AEAFSSMRRGAAFILLSRA-DVVDFDALMAAVSS 282 (365)
T ss_dssp HHHHHTSCTTCEEEECSCG-GGSCHHHHHHHHHT
T ss_pred HHHHhcCCCCcEEEECcCC-chhCHHHHHHHHHc
Confidence 22322 2 2346775666 44555555555443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0071 Score=54.67 Aligned_cols=103 Identities=16% Similarity=0.100 Sum_probs=66.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe-Ee--c-------------------CccccccHHHHHh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT-EH--L-------------------GLPVFNSVAEAKA 113 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~-~i--~-------------------GvPVy~Sv~ea~~ 113 (182)
.+||.|+|+ |.||..++..+.+. |.+++ ++|....-- .+ . ++.+..+++++.+
T Consensus 9 ~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~--~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~ 85 (481)
T 2o3j_A 9 VSKVVCVGA-GYVGGPTCAMIAHKCPHITVT--VVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIA 85 (481)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHHCTTSEEE--EECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEE--EEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhh
Confidence 368999998 99999999998887 67888 666532100 00 1 2334445666666
Q ss_pred ccCCcEEEEeeChH---------------HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 114 ETKANASVIYVPPP---------------FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 114 ~~~~DvaVdfVpp~---------------av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++|++++.||.. .+.++++...+. .-..+|+..+.++....+++.+..++
T Consensus 86 --~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~ 151 (481)
T 2o3j_A 86 --EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE 151 (481)
T ss_dssp --HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred --cCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 689999998753 366666655543 33345555666776666666554433
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0092 Score=50.98 Aligned_cols=90 Identities=14% Similarity=0.071 Sum_probs=59.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCC---------CeEe--cC-ccccccHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKG---------GTEH--LG-LPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~---------G~~i--~G-vPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +.+ ++... +-+. .+ +-=..++.++.+ ++|+++...
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~-~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~--~~d~Vi~~a 81 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVR-AQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFINT 81 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEE-EEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEE-EEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHh--cCCEEEEcC
Confidence 46799999999999999999999898988 533 22211 1111 11 111123555566 789988655
Q ss_pred Ch------HHHHHHHHHHHHcC-CCEEEEeCCC
Q 030169 125 PP------PFAAAAIMEAMEAE-LDLVVCITEG 150 (182)
Q Consensus 125 pp------~av~~a~~eAie~G-Ik~VV~iTeG 150 (182)
.. .....+++.|.++| ++.+|.+++.
T Consensus 82 ~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~ 114 (352)
T 1xgk_A 82 TSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114 (352)
T ss_dssp CSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 43 23466777788889 9887776654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0057 Score=52.03 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=61.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC-------CCeEe--------cCccccccHHHHHhccCCcEEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK-------GGTEH--------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~-------~G~~i--------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
.+||+|+|+ |.||..++..+.+.|.+|. .+++.. .|-.+ ..+++.++.+++ + ++|++++
T Consensus 3 ~mkI~IiGa-G~~G~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~Vil 76 (335)
T 3ghy_A 3 LTRICIVGA-GAVGGYLGARLALAGEAIN--VLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-G--EQDVVIV 76 (335)
T ss_dssp CCCEEEESC-CHHHHHHHHHHHHTTCCEE--EECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-C--CCSEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-C--CCCEEEE
Confidence 478999999 9999999999998887777 555421 11111 123456677764 4 7999999
Q ss_pred eeChHHHHHHHHHHHHc-C-CCEEEEeCCCCC
Q 030169 123 YVPPPFAAAAIMEAMEA-E-LDLVVCITEGIP 152 (182)
Q Consensus 123 fVpp~av~~a~~eAie~-G-Ik~VV~iTeG~~ 152 (182)
.||+....+++++.... + =..|+.++.|++
T Consensus 77 avk~~~~~~~~~~l~~~l~~~~~iv~~~nGi~ 108 (335)
T 3ghy_A 77 AVKAPALESVAAGIAPLIGPGTCVVVAMNGVP 108 (335)
T ss_dssp CCCHHHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred eCCchhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 99998888777654332 1 235666789974
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0057 Score=52.04 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=58.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----------ecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----------HLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----------i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ + ++....... ..++-=..+++++.+ ++|++|......
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~d~Vih~A~~~ 104 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGHYVI-A-SDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAADM 104 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCCC
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEE-E-EECCCccchhhccCCceEEECCCCCHHHHHHHhC--CCCEEEECceec
Confidence 46899999999999999999999999988 4 333321110 012222233566666 799998875421
Q ss_pred -------------------HHHHHHHHHHHcCCCEEEEeC
Q 030169 128 -------------------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 128 -------------------av~~a~~eAie~GIk~VV~iT 148 (182)
.+..+++.|.++|++.+|.++
T Consensus 105 ~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~S 144 (379)
T 2c5a_A 105 GGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144 (379)
T ss_dssp CCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 134567777788997777655
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=55.15 Aligned_cols=93 Identities=14% Similarity=-0.009 Sum_probs=65.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cC---ccccccHHHHH-hccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LG---LPVFNSVAEAK-AETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~G---vPVy~Sv~ea~-~~~~~DvaVdfVpp~av~~ 131 (182)
+||+|+|+ |.||..+...+.+.|.+|. .+++...+-+. .| .++..+..+.. + ++|++++.||+....+
T Consensus 3 mkI~iiGa-Ga~G~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~D~vilavk~~~~~~ 77 (294)
T 3g17_A 3 LSVAIIGP-GAVGTTIAYELQQSLPHTT--LIGRHAKTITYYTVPHAPAQDIVVKGYEDVTN--TFDVIIIAVKTHQLDA 77 (294)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHCTTCE--EEESSCEEEEEESSTTSCCEEEEEEEGGGCCS--CEEEEEECSCGGGHHH
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCCeEE--EEEeccCcEEEEecCCeeccceecCchHhcCC--CCCEEEEeCCccCHHH
Confidence 68999999 9999999999998887777 55555422111 12 12333333433 3 7899999999999998
Q ss_pred HHHHHHHc-C-CCEEEEeCCCCCHHHH
Q 030169 132 AIMEAMEA-E-LDLVVCITEGIPQHDM 156 (182)
Q Consensus 132 a~~eAie~-G-Ik~VV~iTeG~~~eD~ 156 (182)
++++.... + =..||.+.-|+..++.
T Consensus 78 ~l~~l~~~l~~~~~iv~~~nGi~~~~~ 104 (294)
T 3g17_A 78 VIPHLTYLAHEDTLIILAQNGYGQLEH 104 (294)
T ss_dssp HGGGHHHHEEEEEEEEECCSSCCCGGG
T ss_pred HHHHHHHhhCCCCEEEEeccCcccHhh
Confidence 88776543 2 2356777999988765
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0023 Score=51.95 Aligned_cols=84 Identities=14% Similarity=0.012 Sum_probs=56.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeCh------------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP------------ 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp------------ 126 (182)
|||+|.|++|..|+.+++.+. .|.+|+ +++..... ...++-=..+++++++..++|+++.....
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~--~~~r~~~~-~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~ 76 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLI--ALDVHSKE-FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPEL 76 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEE--EECTTCSS-SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEE--Eecccccc-ccccCCCHHHHHHHHHhcCCCEEEECcccCCHhhhhcCHHH
Confidence 479999999999999999998 798988 45543311 11233333456677764469999987532
Q ss_pred ------HHHHHHHHHHHHcCCCEEEE
Q 030169 127 ------PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 127 ------~av~~a~~eAie~GIk~VV~ 146 (182)
.....+++.|.+.|++.|..
T Consensus 77 ~~~~n~~~~~~l~~a~~~~~~~~v~~ 102 (299)
T 1n2s_A 77 AQLLNATSVEAIAKAANETGAWVVHY 102 (299)
T ss_dssp HHHHHTHHHHHHHHHHTTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 12456677777778865544
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.015 Score=45.41 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=59.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCC-----e----EecCccccccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGG-----T----EHLGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G-----~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
.++|+|.|++|..|+.+++.+.+. |.+|+ + ++..... . -..++-=..+++++.+ ++|+++.....
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~ 79 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAK-G-LVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILTSA 79 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEE-E-EESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEE-E-EEcCCCchhhcCCCeeEEEecCCCHHHHHHHHc--CCCEEEEeccc
Confidence 467999999999999999999988 78888 3 4432110 0 0112222334666666 78998876431
Q ss_pred -------------------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 -------------------------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 -------------------------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
..+..+++.|.+++++.+|.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 80 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp CCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred cccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 23567778888889988776553
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.01 Score=49.47 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=58.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-------------------eEe--cCccccccHHHHHhccC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-------------------TEH--LGLPVFNSVAEAKAETK 116 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-------------------~~i--~GvPVy~Sv~ea~~~~~ 116 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +++....+ -+. .++-=..+++++.+ +
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~ 102 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLDQKVV--GLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--G 102 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--T
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc--C
Confidence 46899999999999999999999998888 44332211 000 12222233556666 7
Q ss_pred CcEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 117 ANASVIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 117 ~DvaVdfVpp------------------~av~~a~~eAie~GIk~VV~iT 148 (182)
+|++|..... ..+..+++.|.+.|++.+|.++
T Consensus 103 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~S 152 (352)
T 1sb8_A 103 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAA 152 (352)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 9999987642 1235567778888998777655
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=56.03 Aligned_cols=86 Identities=14% Similarity=0.021 Sum_probs=62.9
Q ss_pred ceEEEEccCCCCchhhhHHHHH---h-CCceEEeeccC-----------------CCCC------eE--ec--Ccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAIE---Y-GTKMVVGGVTP-----------------KKGG------TE--HL--GLPVF-- 105 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~---~-g~~IV~AgVdp-----------------~~~G------~~--i~--GvPVy-- 105 (182)
.||.|.|+ |+.|+.+.+.+.+ . +++|+ |-.+. +..+ +. ++ .++++
T Consensus 3 ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eiv-ai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~ 80 (339)
T 2x5j_O 3 VRVAINGF-GRIGRNVVRALYESGRRAEITVV-AINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHE 80 (339)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTSGGGTEEEE-EEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred eEEEEECc-CHHHHHHHHHHHcCCCCCCEEEE-EEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEec
Confidence 58999999 9999999998887 4 69998 54332 0000 00 11 35566
Q ss_pred ccHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 106 NSVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 106 ~Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
.+++++. ++.++|+++..+|.....+.+...+++|.+.||+
T Consensus 81 ~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVI 122 (339)
T 2x5j_O 81 RSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLF 122 (339)
T ss_dssp SSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEE
T ss_pred CChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEE
Confidence 2455543 2237999999999999999999999999998877
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0011 Score=57.57 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=68.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~ 133 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ +.|+.....+ ..|+. +.+++|+.+ +.|++++.+|.. .+...+
T Consensus 145 g~tvGIIG~-G~IG~~vA~~l~~~G~~V~--~~d~~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~P~t~~t~~li 218 (330)
T 4e5n_A 145 NATVGFLGM-GAIGLAMADRLQGWGATLQ--YHEAKALDTQTEQRLGLR-QVACSELFA--SSDFILLALPLNADTLHLV 218 (330)
T ss_dssp TCEEEEECC-SHHHHHHHHHTTTSCCEEE--EECSSCCCHHHHHHHTEE-ECCHHHHHH--HCSEEEECCCCSTTTTTCB
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE--EECCCCCcHhHHHhcCce-eCCHHHHHh--hCCEEEEcCCCCHHHHHHh
Confidence 467999998 9999999999999999988 7888652211 12453 458999988 799999999953 334444
Q ss_pred HHHHHcCCC---EEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 134 MEAMEAELD---LVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 134 ~eAie~GIk---~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+..-..++ .+|+++.| +.-|...|.++.+.-.|
T Consensus 219 ~~~~l~~mk~gailIN~arg-~~vd~~aL~~aL~~g~i 255 (330)
T 4e5n_A 219 NAELLALVRPGALLVNPCRG-SVVDEAAVLAALERGQL 255 (330)
T ss_dssp CHHHHTTSCTTEEEEECSCG-GGBCHHHHHHHHHHTSE
T ss_pred CHHHHhhCCCCcEEEECCCC-chhCHHHHHHHHHhCCc
Confidence 322222222 46675555 44455555555544333
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0043 Score=52.68 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=57.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE-----ecCcccc-------ccHHHHHhccCCcEEEEe
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE-----HLGLPVF-------NSVAEAKAETKANASVIY 123 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~-----i~GvPVy-------~Sv~ea~~~~~~DvaVdf 123 (182)
+.++|+|.|++|..|+.+++.+.+.| .+|+ + ++....... ..++.++ .+++++.+ ++|++|-.
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~-~-~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~--~~d~Vih~ 106 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVH-V-VDNLLSAEKINVPDHPAVRFSETSITDDALLASLQD--EYDYVFHL 106 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCSEEE-E-ECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCS--CCSEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCceEE-E-EECCCCCchhhccCCCceEEEECCCCCHHHHHHHhh--CCCEEEEC
Confidence 34789999999999999999999999 9998 4 443322110 1122221 22344444 79999987
Q ss_pred eChH------------------HHHHHHHHHHHc-CCCEEEEeCC
Q 030169 124 VPPP------------------FAAAAIMEAMEA-ELDLVVCITE 149 (182)
Q Consensus 124 Vpp~------------------av~~a~~eAie~-GIk~VV~iTe 149 (182)
.... ....+++.|.+. |++.+|.+++
T Consensus 107 A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS 151 (377)
T 2q1s_A 107 ATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA 151 (377)
T ss_dssp CCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred CCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 5421 244566677777 8877765443
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0024 Score=55.48 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=59.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEe--c--Ccccccc-HHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEH--L--GLPVFNS-VAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i--~--GvPVy~S-v~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+||.|.|++|+.|+.+.+.+.+.+ .+++ ...+....|+.+ . .+++++. .++ .++|+++..+|.....
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~-~~~s~~~~g~~l~~~g~~i~v~~~~~~~----~~~DvV~~a~g~~~s~ 75 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELR-LYASPRSAGVRLAFRGEEIPVEPLPEGP----LPVDLVLASAGGGISR 75 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCE-EEECGGGSSCEEEETTEEEEEEECCSSC----CCCSEEEECSHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEE-EeeccccCCCEEEEcCceEEEEeCChhh----cCCCEEEECCCccchH
Confidence 479999999999999999888655 3333 222222223222 1 3444432 111 1689999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCC
Q 030169 131 AAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~ 151 (182)
+.+..++++|.+.|-. +.-+
T Consensus 76 ~~a~~~~~~G~~vId~-s~~~ 95 (331)
T 2yv3_A 76 AKALVWAEGGALVVDN-SSAW 95 (331)
T ss_dssp HHHHHHHHTTCEEEEC-SSSS
T ss_pred HHHHHHHHCCCEEEEC-CCcc
Confidence 9999999999976665 5444
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.02 Score=45.86 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=57.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC---ceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeCh--------
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT---KMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP-------- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~---~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp-------- 126 (182)
.++|+|.|++|-.|+.+++.+.+.|. .-. .++.... + ++-=..+++++.+..++|+++.+...
T Consensus 6 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~-~~~~~~~-~----D~~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~ 79 (319)
T 4b8w_A 6 SMRILVTGGSGLVGKAIQKVVADGAGLPGEDW-VFVSSKD-A----DLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNI 79 (319)
T ss_dssp CCEEEEETCSSHHHHHHHHHHHTTTCCTTCEE-EECCTTT-C----CTTSHHHHHHHHHHSCCSEEEECCCCCCCHHHHT
T ss_pred CCeEEEECCCcHHHHHHHHHHHhcCCcccccc-cccCcee-c----ccCCHHHHHHHHhhcCCCEEEECceecccccccc
Confidence 47899999999999999999998773 111 1333222 1 23233457777776679999987432
Q ss_pred -----------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 -----------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 -----------~av~~a~~eAie~GIk~VV~iT 148 (182)
..+..+++.|.+.|++.+|.++
T Consensus 80 ~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~S 112 (319)
T 4b8w_A 80 KYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCL 112 (319)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEc
Confidence 1234567788888998777645
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0065 Score=49.69 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-CeEe-cCccccccHHHHHhccCCcEEEEeeChH---------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-GTEH-LGLPVFNSVAEAKAETKANASVIYVPPP--------- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-G~~i-~GvPVy~Sv~ea~~~~~~DvaVdfVpp~--------- 127 (182)
++|+|.|++|..|+.+++.+.+.|.+|+ +++.... +..+ .++--..++.++++..++|++|......
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~ 80 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNWHAV--GCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQP 80 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEE--EEC------------------CHHHHHHHCCSEEEECC------------
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCeEE--EEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcccChhhhhcCH
Confidence 6899999999999999999999999988 4442211 1000 1222234456666644689988765432
Q ss_pred ---------HHHHHHHHHHHcCCCEEEE
Q 030169 128 ---------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 ---------av~~a~~eAie~GIk~VV~ 146 (182)
.+..+++.|.++|++.|.+
T Consensus 81 ~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 108 (315)
T 2ydy_A 81 DAASQLNVDASGNLAKEAAAVGAFLIYI 108 (315)
T ss_dssp -------CHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 2456777788888855544
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0037 Score=54.85 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCC-------------CCCe----------E--ecC--ccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPK-------------KGGT----------E--HLG--LPVFN-- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~-------------~~G~----------~--i~G--vPVy~-- 106 (182)
.||.|.|+ |+.|+.+.+.+.+. +++|| |-.+.. .-|+ . +.| ++++.
T Consensus 3 ikVgI~G~-G~IGr~v~r~l~~~~~~~~evv-aInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (339)
T 3b1j_A 3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVV-AINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR 80 (339)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSCCSEEEE-EEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred eEEEEECC-CHHHHHHHHHHHhcCCCCeEEE-EEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecC
Confidence 58999999 99999999988865 48998 543330 0010 1 122 55553
Q ss_pred cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++++. .+.++|+++..++.....+.+...+++|.+.||+
T Consensus 81 dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVI 121 (339)
T 3b1j_A 81 NPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121 (339)
T ss_dssp CGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred ChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEE
Confidence 456654 2237999999999999999999999999998887
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0027 Score=56.14 Aligned_cols=92 Identities=11% Similarity=0.007 Sum_probs=67.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEec--------Ccccccc-HHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHL--------GLPVFNS-VAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~--------GvPVy~S-v~ea~~~~~~DvaVdfVpp~ 127 (182)
..||.|+|+||-.|+++.+.+.+.. ++|+ .--+....|+.+. ++++.+. .+++.+ ++|+++...|..
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~-~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~--~~Dvvf~alp~~ 89 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKIT-YLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALPAG 89 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEE-EEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCSTT
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEE-EEeCcccccCChHHhChhhccCceEEeCCHHHhhc--CCCEEEECCCcH
Confidence 4689999999999999999888654 8888 5555555665443 3344332 344334 699999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHD 155 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD 155 (182)
.+.+.+.++ +|+++|=. +.-|..+|
T Consensus 90 ~s~~~~~~~--~g~~VIDl-SsdfRl~~ 114 (351)
T 1vkn_A 90 ASYDLVREL--KGVKIIDL-GADFRFDD 114 (351)
T ss_dssp HHHHHHTTC--CSCEEEES-SSTTTCSS
T ss_pred HHHHHHHHh--CCCEEEEC-ChhhhCCc
Confidence 999999988 88875554 76666554
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0048 Score=52.09 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=56.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC------------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP------------ 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp------------ 125 (182)
|||+|.|++|..|+.+++.+.+.|. +++ .+|... =..+++++.+ ++|+++....
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~--~~d~~~---------d~~~l~~~~~--~~d~Vih~a~~~~~~~~~~~~~ 67 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIF--EVHRQT---------KEEELESALL--KADFIVHLAGVNRPEHDKEFSL 67 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEE--ECCTTC---------CHHHHHHHHH--HCSEEEECCCSBCTTCSTTCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEE--EECCCC---------CHHHHHHHhc--cCCEEEECCcCCCCCCHHHHHH
Confidence 5899999999999999999999996 888 444431 1234566666 6899887652
Q ss_pred --hHHHHHHHHHHHHcCCC-EEEEeC
Q 030169 126 --PPFAAAAIMEAMEAELD-LVVCIT 148 (182)
Q Consensus 126 --p~av~~a~~eAie~GIk-~VV~iT 148 (182)
-..+..+++.|.++|++ .+|.++
T Consensus 68 ~n~~~~~~l~~a~~~~~~~~~~v~~S 93 (369)
T 3st7_A 68 GNVSYLDHVLDILTRNTKKPAILLSS 93 (369)
T ss_dssp SCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 23456788888888987 565544
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.015 Score=47.46 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=56.4
Q ss_pred eEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE-----ecCccccccHHHHHhccCCcEEEEeeChH-----
Q 030169 60 RVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE-----HLGLPVFNSVAEAKAETKANASVIYVPPP----- 127 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~-----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~----- 127 (182)
||+|.|++|-.|+.+++.+.+. |.+|+ + ++......+ ..++-=..++.+++++.++|+++......
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~-~-~~r~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~ 78 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVI-A-SDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGE 78 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEE-E-EESSCCCCTTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEE-E-ecCCCccccCceEEEecCCCHHHHHHHHhhcCCcEEEECCcccCCccc
Confidence 5899999999999999999987 67888 3 332221100 11222223466666655799999876421
Q ss_pred ------------HHHHHHHHHHHcCCCEEEEeC
Q 030169 128 ------------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 128 ------------av~~a~~eAie~GIk~VV~iT 148 (182)
.+..+++.|.++|++.+|.++
T Consensus 79 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~S 111 (317)
T 3ajr_A 79 KDPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111 (317)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cChHHHhhhhhHHHHHHHHHHHHcCCCEEEEec
Confidence 234566777788997777644
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.01 Score=48.72 Aligned_cols=90 Identities=12% Similarity=0.209 Sum_probs=58.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--------------eEe--cCccccccHHHHHhccCCcEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--------------TEH--LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--------------~~i--~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ + ++..... -+. .++-=..+++++.+..++|++|
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 80 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGYEVY-G-ADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY 80 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE-E-ECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-E-EECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999988 4 3332211 000 1222223355666644689998
Q ss_pred EeeCh------------------HHHHHHHHHHHHcCC-CEEEEeCC
Q 030169 122 IYVPP------------------PFAAAAIMEAMEAEL-DLVVCITE 149 (182)
Q Consensus 122 dfVpp------------------~av~~a~~eAie~GI-k~VV~iTe 149 (182)
-.... ..+..+++.|.+.|+ +.+|.+++
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 127 (345)
T 2z1m_A 81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAST 127 (345)
T ss_dssp ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEec
Confidence 87542 114556777777787 66665443
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0015 Score=58.48 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=64.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHH-----HHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA-----AAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av-----~~a 132 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ +.||.... ..+.-.+.+++|+.+ +.|++++.+|-... ..+
T Consensus 119 gktvGIIGl-G~IG~~vA~~l~a~G~~V~--~~d~~~~~--~~~~~~~~sl~ell~--~aDiV~l~~Plt~~g~~~T~~l 191 (381)
T 3oet_A 119 DRTIGIVGV-GNVGSRLQTRLEALGIRTL--LCDPPRAA--RGDEGDFRTLDELVQ--EADVLTFHTPLYKDGPYKTLHL 191 (381)
T ss_dssp GCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECHHHHH--TTCCSCBCCHHHHHH--HCSEEEECCCCCCSSTTCCTTS
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEE--EECCChHH--hccCcccCCHHHHHh--hCCEEEEcCcCCccccccchhh
Confidence 357999999 9999999999999999999 77875311 112235789999998 79999999995432 222
Q ss_pred H-HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHH
Q 030169 133 I-MEAMEA-EL-DLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 133 ~-~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ 162 (182)
+ .+.++. +- ..+|+++.|=.+.+...+.++
T Consensus 192 i~~~~l~~mk~gailIN~aRG~vvde~aL~~aL 224 (381)
T 3oet_A 192 ADETLIRRLKPGAILINACRGPVVDNAALLARL 224 (381)
T ss_dssp BCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 2 122222 22 346775556555444444444
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0045 Score=55.61 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=55.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eEe-cCccccccHHHHHhccCCcEEEEeeChH--------
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TEH-LGLPVFNSVAEAKAETKANASVIYVPPP-------- 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~i-~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-------- 127 (182)
.+||+|.|++|..|+.+++.+.+.|.+|+ + ++..... ..+ .++ -+...++++ ++|++|-.....
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~-~-l~R~~~~~~~v~~d~--~~~~~~~l~--~~D~Vih~A~~~~~~~~~~~ 220 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVI-Q-LVRKEPKPGKRFWDP--LNPASDLLD--GADVLVHLAGEPIFGRFNDS 220 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEE-E-EESSSCCTTCEECCT--TSCCTTTTT--TCSEEEECCCC-----CCGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE-E-EECCCCCccceeecc--cchhHHhcC--CCCEEEECCCCccccccchh
Confidence 57899999999999999999999999998 4 4333211 111 111 133444555 789998765432
Q ss_pred -----------HHHHHHHH-HHHcCCCEEEEeC
Q 030169 128 -----------FAAAAIME-AMEAELDLVVCIT 148 (182)
Q Consensus 128 -----------av~~a~~e-Aie~GIk~VV~iT 148 (182)
.+..+++. |.+.|++.+|.++
T Consensus 221 ~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S 253 (516)
T 3oh8_A 221 HKEAIRESRVLPTKFLAELVAESTQCTTMISAS 253 (516)
T ss_dssp GHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 14455565 4556888777544
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.023 Score=47.30 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=58.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--------------ecCccccccHHHHHhccCCcEEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--------------HLGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--------------i~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ + ++...... . ..++--..+++++.+..++|++|-
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 86 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVK-G-YSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 86 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEE-E-EeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999999988 4 33322110 0 012222234566666446899998
Q ss_pred eeCh---H---------------HHHHHHHHHHHcC-CCEEEEeCC
Q 030169 123 YVPP---P---------------FAAAAIMEAMEAE-LDLVVCITE 149 (182)
Q Consensus 123 fVpp---~---------------av~~a~~eAie~G-Ik~VV~iTe 149 (182)
.... . ....+++.|.+.+ ++.+|.+++
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS 132 (357)
T 1rkx_A 87 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS 132 (357)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred CCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 7641 1 1234666677776 777777665
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0046 Score=55.34 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=63.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccC-------------CCCCe----------E--ecC--ccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTP-------------KKGGT----------E--HLG--LPVFN-- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp-------------~~~G~----------~--i~G--vPVy~-- 106 (182)
.||.|.|+ |+.|+.+.+.+.+. +++|| |-.+. ..-|+ . ++| ++++.
T Consensus 3 ikVgInGf-GrIGr~vlR~l~~~~~~~veIV-aInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (380)
T 2d2i_A 3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVV-AINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR 80 (380)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSSCSEEEE-EEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred cEEEEECc-CHHHHHHHHHHhcCCCCCEEEE-EEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecC
Confidence 58999999 99999999988865 48998 54342 00111 1 123 45553
Q ss_pred cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++++. .+.++|+++..++.....+.+...+++|.+.||+
T Consensus 81 dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVI 121 (380)
T 2d2i_A 81 NPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121 (380)
T ss_dssp CGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred ChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEE
Confidence 455653 1237999999999999999999999999999887
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.018 Score=48.64 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=57.9
Q ss_pred CceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCe----------Ee-----------------------cCcc
Q 030169 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGT----------EH-----------------------LGLP 103 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~----------~i-----------------------~GvP 103 (182)
.|+|+|.|++|-.|+.+++.+. +.|.+|+ + ++...... .+ .++-
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 79 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVV-I-VDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR 79 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEE-E-EECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEE-E-EecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence 3689999999999999999999 9999988 4 43321110 00 1111
Q ss_pred ccccHHHHHhccC-CcEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 104 VFNSVAEAKAETK-ANASVIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 104 Vy~Sv~ea~~~~~-~DvaVdfVpp------------------~av~~a~~eAie~GIk~VV~iT 148 (182)
=..+++++.++.+ +|++|..... ..+..+++.|.+.|++.+|.++
T Consensus 80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~S 143 (397)
T 1gy8_A 80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSS 143 (397)
T ss_dssp CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEEC
Confidence 1223556665445 9999987542 1234566777788988777655
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0037 Score=52.83 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=61.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eEe--cCcccc----------ccHHHHHhccCCcEEEEeeC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TEH--LGLPVF----------NSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~i--~GvPVy----------~Sv~ea~~~~~~DvaVdfVp 125 (182)
+||+|+|+ |.||..+...+. .|.+|. .+++...- +.+ .|+.+. +.-++..+ ++|++++.|+
T Consensus 3 mkI~IiGa-Ga~G~~~a~~L~-~g~~V~--~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~--~~D~vilavK 76 (307)
T 3ego_A 3 LKIGIIGG-GSVGLLCAYYLS-LYHDVT--VVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINS--DFDLLVVTVK 76 (307)
T ss_dssp CEEEEECC-SHHHHHHHHHHH-TTSEEE--EECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCS--CCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHh-cCCceE--EEECCHHHHHHHHhCCceEecCCCeecccccccccccC--CCCEEEEEeC
Confidence 78999999 999999999888 787777 55554310 000 122221 11122233 7899999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHD 155 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD 155 (182)
+....+++.+.-..+-..||.+.-|+..++
T Consensus 77 ~~~~~~~l~~l~~~~~~~ivs~~nGi~~~e 106 (307)
T 3ego_A 77 QHQLQSVFSSLERIGKTNILFLQNGMGHIH 106 (307)
T ss_dssp GGGHHHHHHHTTSSCCCEEEECCSSSHHHH
T ss_pred HHHHHHHHHHhhcCCCCeEEEecCCccHHH
Confidence 999999887664433333777799998764
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.015 Score=48.07 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=57.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-------------------e--E--ecCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-------------------T--E--HLGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-------------------~--~--i~GvPVy~Sv~ea~~~~ 115 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+ + ++..... . + ..++--..+++++.++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGYLPV-V-IDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEE-E-EECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE-E-EecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999999988 4 3321110 0 0 01222223455666544
Q ss_pred CCcEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 116 KANASVIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 116 ~~DvaVdfVpp------------------~av~~a~~eAie~GIk~VV~iT 148 (182)
++|+++-.... .....+++.|.+.|++.+|.++
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~S 131 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSS 131 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 68988876542 1234566777778988777655
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.00067 Score=60.51 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=65.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHH-----HHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA-----AAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av-----~~a 132 (182)
.++|.|+|. |++|+.+++.+..+|++++ +.||.... ...+. .+.+++|+.+ ++|++++.+|.... ..+
T Consensus 116 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~--~~d~~~~~-~~~g~-~~~~l~ell~--~aDvV~l~~Plt~~g~~~T~~l 188 (380)
T 2o4c_A 116 ERTYGVVGA-GQVGGRLVEVLRGLGWKVL--VCDPPRQA-REPDG-EFVSLERLLA--EADVISLHTPLNRDGEHPTRHL 188 (380)
T ss_dssp GCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECHHHHH-HSTTS-CCCCHHHHHH--HCSEEEECCCCCSSSSSCCTTS
T ss_pred CCEEEEEeC-CHHHHHHHHHHHHCCCEEE--EEcCChhh-hccCc-ccCCHHHHHH--hCCEEEEeccCccccccchhhh
Confidence 457999998 9999999999999999998 67765421 11233 3678999988 79999999986552 333
Q ss_pred HH-HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHh
Q 030169 133 IM-EAMEA-ELD-LVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 133 ~~-eAie~-GIk-~VV~iTeG~~~eD~~~l~~~a 163 (182)
+. +.++. +-. .+|+++.| +.-|...|.++.
T Consensus 189 i~~~~l~~mk~gailIN~sRG-~vvd~~aL~~aL 221 (380)
T 2o4c_A 189 LDEPRLAALRPGTWLVNASRG-AVVDNQALRRLL 221 (380)
T ss_dssp BCHHHHHTSCTTEEEEECSCG-GGBCHHHHHHHH
T ss_pred cCHHHHhhCCCCcEEEECCCC-cccCHHHHHHHH
Confidence 32 23332 222 46665666 444444454444
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.013 Score=49.06 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=46.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
+.+||.|+|+ |+||..+.+.+.+.|.+|+ +++.. ++ .+ ++| ++.+|.....+++.+.
T Consensus 5 ~~mkI~IIG~-G~~G~sLA~~L~~~G~~V~--~~~~~---------------~~-~~--~aD--ilavP~~ai~~vl~~l 61 (232)
T 3dfu_A 5 PRLRVGIFDD-GSSTVNMAEKLDSVGHYVT--VLHAP---------------ED-IR--DFE--LVVIDAHGVEGYVEKL 61 (232)
T ss_dssp CCCEEEEECC-SCCCSCHHHHHHHTTCEEE--ECSSG---------------GG-GG--GCS--EEEECSSCHHHHHHHH
T ss_pred CCcEEEEEee-CHHHHHHHHHHHHCCCEEE--EecCH---------------HH-hc--cCC--EEEEcHHHHHHHHHHH
Confidence 3578999998 9999999999999999888 66652 22 33 467 8888888777777665
Q ss_pred HHc
Q 030169 137 MEA 139 (182)
Q Consensus 137 ie~ 139 (182)
...
T Consensus 62 ~~~ 64 (232)
T 3dfu_A 62 SAF 64 (232)
T ss_dssp HTT
T ss_pred HHh
Confidence 543
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.015 Score=47.15 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=55.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--eEecCc------ccccc-HHHHHhccCCcEEEEeeCh--
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--TEHLGL------PVFNS-VAEAKAETKANASVIYVPP-- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~~i~Gv------PVy~S-v~ea~~~~~~DvaVdfVpp-- 126 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +++..... .....+ +-+.- ..+ +. ++|+++-....
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~--~~d~vi~~a~~~~ 81 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGEEVT--VLDDLRVPPMIPPEGTGKFLEKPVLELEERD-LS--DVRLVYHLASHKS 81 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCCEE--EECCCSSCCSSCCTTSSEEECSCGGGCCHHH-HT--TEEEEEECCCCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCEEE--EEecCCcccccchhhhhhhccCCCeeEEeCc-cc--cCCEEEECCccCC
Confidence 47899999999999999999999999998 44433220 001111 11111 112 12 57888765532
Q ss_pred ---------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 ---------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ---------------~av~~a~~eAie~GIk~VV~iT 148 (182)
..+..+++.|.++|++.+|.++
T Consensus 82 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~v~~~v~~S 118 (321)
T 3vps_A 82 VPRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGS 118 (321)
T ss_dssp HHHHTTSTTTTHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hHHHHhCHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Confidence 2346688888889988877655
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0013 Score=55.47 Aligned_cols=87 Identities=13% Similarity=0.247 Sum_probs=57.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccc--cccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPV--y~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
..+|.|+|+ |++|+.+++.+...|.+|+ .+|+.....+ ..|+.+ +.+++|+.+ ++|+++..+|+....+.
T Consensus 157 g~~v~IiG~-G~iG~~~a~~l~~~G~~V~--~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDvVi~~~p~~~i~~~ 231 (300)
T 2rir_A 157 GSQVAVLGL-GRTGMTIARTFAALGANVK--VGARSSAHLARITEMGLVPFHTDELKEHVK--DIDICINTIPSMILNQT 231 (300)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHTTCEEE--EEESSHHHHHHHHHTTCEEEEGGGHHHHST--TCSEEEECCSSCCBCHH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHCCCeEEchhhHHHHhh--CCCEEEECCChhhhCHH
Confidence 467999998 9999999999999999988 6666531101 124433 467888777 79999999998543222
Q ss_pred HHHHHHcCCCEEEEeCCC
Q 030169 133 IMEAMEAELDLVVCITEG 150 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG 150 (182)
....++.| ..+|.++.|
T Consensus 232 ~~~~mk~g-~~lin~a~g 248 (300)
T 2rir_A 232 VLSSMTPK-TLILDLASR 248 (300)
T ss_dssp HHTTSCTT-CEEEECSST
T ss_pred HHHhCCCC-CEEEEEeCC
Confidence 11222222 356665554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.032 Score=40.86 Aligned_cols=100 Identities=11% Similarity=-0.014 Sum_probs=60.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccc-cccH--HHHHhc---cCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPV-FNSV--AEAKAE---TKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPV-y~Sv--~ea~~~---~~~DvaVdfVpp~a 128 (182)
.++|+|+|+ |++|+.+++.+.+.|.+++ ++|.....-+ ..++++ +.+. .+.+++ .++|+++..+|...
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~--~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVL--AVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE 82 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEE--EEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCeEE--EEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence 357999999 9999999999999999988 5555431100 124433 2221 122221 26899999998554
Q ss_pred H-HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 129 A-AAAIMEAMEAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 129 v-~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
. ..++..+-+.|...|++.+.. .++...+.++
T Consensus 83 ~n~~~~~~a~~~~~~~iia~~~~--~~~~~~l~~~ 115 (141)
T 3llv_A 83 FNLKILKALRSVSDVYAIVRVSS--PKKKEEFEEA 115 (141)
T ss_dssp HHHHHHHHHHHHCCCCEEEEESC--GGGHHHHHHT
T ss_pred HHHHHHHHHHHhCCceEEEEEcC--hhHHHHHHHc
Confidence 4 345555656676666654433 3344444443
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0053 Score=53.70 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=62.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCC-------------CCCe----------Ee--c--Cccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPK-------------KGGT----------EH--L--GLPVFN-- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~-------------~~G~----------~i--~--GvPVy~-- 106 (182)
.||.|.|+ |+.|+.+.+.+.+. +++|+ +-.+.. .-|+ .+ . .++++.
T Consensus 1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eiv-ain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (332)
T 1hdg_O 1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVV-AINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEP 78 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCTTCEEE-EEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCS
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEE-EEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecC
Confidence 37999999 99999999988865 49998 543321 0111 01 2 356663
Q ss_pred cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+.+++. ++.++|+++..+|.....+.+...+++|.|.+|+
T Consensus 79 dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVI 119 (332)
T 1hdg_O 79 DPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII 119 (332)
T ss_dssp SGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred ChHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEE
Confidence 455542 2237999999999999999999999999987776
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0054 Score=55.12 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=64.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCc-----cc--cccHHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGL-----PV--FNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~Gv-----PV--y~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
.++|+|.| +|.+|+.+++.+.+.|.+|++++-++.+... ...++ -+ ..+++++++ ++|+++..+|+.
T Consensus 3 ~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~DvVIn~a~~~ 79 (450)
T 1ff9_A 3 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPYT 79 (450)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECCC--
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc--CCcEEEECCccc
Confidence 35799999 5999999999999888887733433321100 01111 11 124556666 799999999987
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
....+...|++.|.+. ++ + .........+.++|++-
T Consensus 80 ~~~~i~~a~l~~g~~v-vd-~-~~~~~~~~~l~~aA~~a 115 (450)
T 1ff9_A 80 FHATVIKSAIRQKKHV-VT-T-SYVSPAMMELDQAAKDA 115 (450)
T ss_dssp CHHHHHHHHHHHTCEE-EE-S-SCCCHHHHHTHHHHHHT
T ss_pred cchHHHHHHHhCCCeE-EE-e-ecccHHHHHHHHHHHHC
Confidence 7667788889998654 44 2 23334456666666543
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0054 Score=53.73 Aligned_cols=86 Identities=13% Similarity=-0.037 Sum_probs=63.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccC-------------CCCC----------eEe--c--Cccccc--cHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP-------------KKGG----------TEH--L--GLPVFN--SVA 109 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp-------------~~~G----------~~i--~--GvPVy~--Sv~ 109 (182)
.||.|.|+ |+.|+.+.+.+.+.+++|+ |-.+. ..-| +.+ + .++|+. +.+
T Consensus 1 ikVgInG~-G~IGr~vlr~l~~~~~evv-aind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 78 (331)
T 2g82_O 1 MKVGINGF-GRIGRQVFRILHSRGVEVA-LINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK 78 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEE-EEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCEEE-EEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChh
Confidence 37999999 9999999998886699998 63332 1112 111 2 466763 455
Q ss_pred HHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 110 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 110 ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++. .+.++|+++..++.....+.+...+++|.|.||+
T Consensus 79 ~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVI 116 (331)
T 2g82_O 79 EIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116 (331)
T ss_dssp GSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred hCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEE
Confidence 543 2346899999999999999999999999998887
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.015 Score=48.77 Aligned_cols=88 Identities=11% Similarity=-0.003 Sum_probs=56.2
Q ss_pred CceEEEEccCCCCchhhhHHHHH--hCCceEEeeccCCCC------------CeE-----------ecCccccccHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE--YGTKMVVGGVTPKKG------------GTE-----------HLGLPVFNSVAEAK 112 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~--~g~~IV~AgVdp~~~------------G~~-----------i~GvPVy~Sv~ea~ 112 (182)
.++|+|.|++|-.|+.+++.+.+ .|.+|+ +++.... +.. ..++--..+++++
T Consensus 10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 86 (362)
T 3sxp_A 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVV--VLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL- 86 (362)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCTTSEEE--EEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCeEE--EEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh-
Confidence 47899999999999999999998 899998 4443221 100 0122222234454
Q ss_pred hccCCcEEEEeeCh----------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 113 AETKANASVIYVPP----------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 113 ~~~~~DvaVdfVpp----------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
...++|++|-.... ..+..+++.|.+.|++ +|.+++
T Consensus 87 ~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS 138 (362)
T 3sxp_A 87 EKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASS 138 (362)
T ss_dssp TTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred hccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCc
Confidence 12379999865431 3345677788888998 554453
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.019 Score=47.21 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=57.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC--CC-----------C-eE--ecCccccccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK--KG-----------G-TE--HLGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~--~~-----------G-~~--i~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+ +++.. .. + -+ ..++-=..+++++++..++|++|-
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLI--VFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEE--EEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEE
Confidence 4799999999999999999999999988 44321 10 1 00 012222334666666445999998
Q ss_pred eeChH------------------HHHHHHHHHHHcCCC-EEEEeC
Q 030169 123 YVPPP------------------FAAAAIMEAMEAELD-LVVCIT 148 (182)
Q Consensus 123 fVpp~------------------av~~a~~eAie~GIk-~VV~iT 148 (182)
..... .+..+++.|.+.+++ .+|.++
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S 124 (347)
T 1orr_A 80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 124 (347)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 76421 234567778888886 555544
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0098 Score=48.19 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=57.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe----E--ecCccccccHHHHHhccCCcEEEEeeCh-----
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----E--HLGLPVFNSVAEAKAETKANASVIYVPP----- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~----~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp----- 126 (182)
.+||+|.| +|..|+.+++.+.+.|.+|+ +++...... + ..++-=..+++++.+. ++|++|....+
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~d~vih~a~~~~~~~ 78 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQGHEVT--GLRRSAQPMPAGVQTLIADVTRPDTLASIVHL-RPEILVYCVAASEYSD 78 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTCCEE--EEECTTSCCCTTCCEEECCTTCGGGCTTGGGG-CCSEEEECHHHHHHC-
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCCEEE--EEeCCccccccCCceEEccCCChHHHHHhhcC-CCCEEEEeCCCCCCCH
Confidence 36899999 59999999999999999998 444332110 0 1122222335555552 49999987643
Q ss_pred --------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 --------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 --------~av~~a~~eAie~GIk~VV~iT 148 (182)
..+..+++.|.+.|++.+|.++
T Consensus 79 ~~~~~~n~~~~~~ll~a~~~~~~~~~v~~S 108 (286)
T 3gpi_A 79 EHYRLSYVEGLRNTLSALEGAPLQHVFFVS 108 (286)
T ss_dssp ----CCSHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEEEc
Confidence 2366777777778988776545
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0073 Score=53.83 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=62.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCcccc-cc--HHHHHhc---cCCcEEEEeeChH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVF-NS--VAEAKAE---TKANASVIYVPPP 127 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy-~S--v~ea~~~---~~~DvaVdfVpp~ 127 (182)
..++|+|+|+ |++|+.+++.+.+.|.+++ .+|....--+ ..|++++ .+ =.+++++ .++|++|+.++..
T Consensus 3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vv--vId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~ 79 (413)
T 3l9w_A 3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMV--VLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP 79 (413)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEE--EEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEE--EEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCCh
Confidence 3467999999 9999999999999999888 5555431100 1367666 22 1222221 2789999999865
Q ss_pred HHH-HHHHHHHHcCCC-EEEEeCCCCCHHHHHHHHH
Q 030169 128 FAA-AAIMEAMEAELD-LVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 128 av~-~a~~eAie~GIk-~VV~iTeG~~~eD~~~l~~ 161 (182)
... .++..+-+.+.+ .|++-+. ..++..+|.+
T Consensus 80 ~~n~~i~~~ar~~~p~~~Iiara~--~~~~~~~L~~ 113 (413)
T 3l9w_A 80 QTNLQLTEMVKEHFPHLQIIARAR--DVDHYIRLRQ 113 (413)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEES--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHH
Confidence 544 556666666765 3444232 3445555544
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.025 Score=44.77 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=58.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E---ecCcccc-cc------HHHHHhccCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E---HLGLPVF-NS------VAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~---i~GvPVy-~S------v~ea~~~~~~DvaVdfVpp~ 127 (182)
|||+|+|+ |++|+.+++.+.+.|.+++ .++....-- + ..|++++ .+ ++++. -.++|+++..++.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~--vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~-i~~ad~vi~~~~~d 76 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVV--IINKDRELCEEFAKKLKATIIHGDGSHKEILRDAE-VSKNDVVVILTPRD 76 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEE--EEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHT-CCTTCEEEECCSCH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE--EEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcC-cccCCEEEEecCCc
Confidence 57999998 9999999999999998888 555443110 0 1244443 22 22221 12789999999988
Q ss_pred HHHHHHHHHH-H-cCCCEEEEeCCC
Q 030169 128 FAAAAIMEAM-E-AELDLVVCITEG 150 (182)
Q Consensus 128 av~~a~~eAi-e-~GIk~VV~iTeG 150 (182)
.....+.... + .+...+++-+.+
T Consensus 77 ~~n~~~~~~a~~~~~~~~iia~~~~ 101 (218)
T 3l4b_C 77 EVNLFIAQLVMKDFGVKRVVSLVND 101 (218)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECCCS
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7665555544 3 477778775544
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.016 Score=52.62 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=65.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEe---cCccc-------cccHHHHHhccCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEH---LGLPV-------FNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i---~GvPV-------y~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
.+|+|.|+ |.+|+.+++.+.+. +.+|+++.-++.+.. +. .++.+ +.++.++++ ++|++|..+|+.
T Consensus 24 k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~-~la~~~~~~~~~~D~~d~~~l~~~l~--~~DvVIn~tp~~ 99 (467)
T 2axq_A 24 KNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQ-ALAKPSGSKAISLDVTDDSALDKVLA--DNDVVISLIPYT 99 (467)
T ss_dssp EEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHH-HHHGGGTCEEEECCTTCHHHHHHHHH--TSSEEEECSCGG
T ss_pred CEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHH-HHHHhcCCcEEEEecCCHHHHHHHHc--CCCEEEECCchh
Confidence 57999998 99999999999877 677763333322211 01 12221 124556666 799999999998
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
....+.+.|++.|...+-. +. +. .+...+.+.|++
T Consensus 100 ~~~~v~~a~l~~g~~vvd~-~~-~~-p~~~~Ll~~Ak~ 134 (467)
T 2axq_A 100 FHPNVVKSAIRTKTDVVTS-SY-IS-PALRELEPEIVK 134 (467)
T ss_dssp GHHHHHHHHHHHTCEEEEC-SC-CC-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCEEEEe-ec-CC-HHHHHHHHHHHH
Confidence 7777889999999766532 32 23 334555555554
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.029 Score=46.99 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe-Ee---cCccc--------cccHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT-EH---LGLPV--------FNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~-~i---~GvPV--------y~Sv~ea~~~~~~DvaVdfV 124 (182)
.++|+|.|++|-.|+.+++.+.+. |.+|+ + ++...... .. .++.+ ..+++++.+ ++|+++-+.
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~-~-~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~--~~d~Vih~A 99 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVF-G-MDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK--KCDVILPLV 99 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEE-E-EESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH--HCSEEEECB
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEE-E-EeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc--cCCEEEEcC
Confidence 368999999999999999999988 88988 4 44332110 00 12222 233555666 799999743
Q ss_pred C---hH---------------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 125 P---PP---------------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 125 p---p~---------------av~~a~~eAie~GIk~VV~iTe 149 (182)
. +. .+..+++.|.+.| +.+|.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS 141 (372)
T 3slg_A 100 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPST 141 (372)
T ss_dssp CCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECC
T ss_pred ccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCc
Confidence 2 21 1245677888889 66665554
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.024 Score=46.38 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=57.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---------ecCccccccHHHHHhccCCcEEEEeeCh---
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---------HLGLPVFNSVAEAKAETKANASVIYVPP--- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---------i~GvPVy~Sv~ea~~~~~~DvaVdfVpp--- 126 (182)
++|+|.|++|-.|+.+++.+.+.| .++ +.........+ ..++-- .++.++.+ ++|+++-....
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v-~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~--~~d~vih~a~~~~~ 76 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIV-VIDNLSSGNEEFVNEAARLVKADLAA-DDIKDYLK--GAEEVWHIAANPDV 76 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEE-EECCCSSCCGGGSCTTEEEECCCTTT-SCCHHHHT--TCSEEEECCCCCCC
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEE-EEEcCCCCChhhcCCCcEEEECcCCh-HHHHHHhc--CCCEEEECCCCCCh
Confidence 479999999999999999999988 666 44333221100 113333 45677777 79998876431
Q ss_pred ---------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 ---------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ---------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
..+..+++.|.++|++.+|.+++
T Consensus 77 ~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 77 RIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp C-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 13445777788889988877664
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.02 Score=42.54 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=61.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCcccc-cc--HHHHHhc---cCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVF-NS--VAEAKAE---TKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy-~S--v~ea~~~---~~~DvaVdfVpp~a 128 (182)
..+|+|+|+ |++|+.+++.+.+.|.+++ +++....--+ ..|++++ .+ -.+.+++ .++|++++.+|.+.
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~--vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLV--VIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY 83 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEE--EEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHH
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEE--EEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChH
Confidence 457999999 9999999999999999988 6666542100 1356544 22 2222221 27899999999765
Q ss_pred HH-HHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 129 AA-AAIMEAMEA-ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 129 v~-~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
.. .++..+.+. +-..|++-+ -..++...+.++
T Consensus 84 ~n~~~~~~a~~~~~~~~iiar~--~~~~~~~~l~~~ 117 (140)
T 3fwz_A 84 EAGEIVASARAKNPDIEIIARA--HYDDEVAYITER 117 (140)
T ss_dssp HHHHHHHHHHHHCSSSEEEEEE--SSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHC
Confidence 44 455555554 222344423 334555555554
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.018 Score=46.86 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=54.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccc-ccc-----HHHHHhccCCcEEEEeeC----
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPV-FNS-----VAEAKAETKANASVIYVP---- 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPV-y~S-----v~ea~~~~~~DvaVdfVp---- 125 (182)
+||+|.|++|-.|+.+++.+.+.|.+|+ +++....... ..++.+ .-+ +.++.+ . |+++-...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~-d~vih~A~~~~~ 75 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVV--VVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIK--G-DVVFHFAANPEV 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCC--C-SEEEECCSSCSS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEE--EEeCCCCCchhhcCCCceEEECccccHHHHhhcC--C-CEEEECCCCCCc
Confidence 5799999999999999999999999988 4443221110 011111 112 333333 2 88886653
Q ss_pred --------------hHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 126 --------------PPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 126 --------------p~av~~a~~eAie~GIk~VV~iTe 149 (182)
-..+..+++.|.++|++.+|.+++
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 113 (312)
T 3ko8_A 76 RLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASS 113 (312)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 123456778888889987776553
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0023 Score=53.76 Aligned_cols=86 Identities=14% Similarity=0.255 Sum_probs=57.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccc--cccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPV--y~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
..+|.|+|+ |++|+.+++.+..+|.+|+ .+|+.....+ ..|..+ +.+++++.+ ++|++++.+|.....+-
T Consensus 155 g~~v~IiG~-G~iG~~~a~~l~~~G~~V~--~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDvVi~~~p~~~i~~~ 229 (293)
T 3d4o_A 155 GANVAVLGL-GRVGMSVARKFAALGAKVK--VGARESDLLARIAEMGMEPFHISKAAQELR--DVDVCINTIPALVVTAN 229 (293)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EEESSHHHHHHHHHTTSEEEEGGGHHHHTT--TCSEEEECCSSCCBCHH
T ss_pred CCEEEEEee-CHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHHCCCeecChhhHHHHhc--CCCEEEECCChHHhCHH
Confidence 467999998 9999999999999999988 6666531100 124333 356888777 79999999997544332
Q ss_pred HHHHHHcCCCEEEEeCC
Q 030169 133 IMEAMEAELDLVVCITE 149 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTe 149 (182)
....++.| ..+|.++.
T Consensus 230 ~l~~mk~~-~~lin~ar 245 (293)
T 3d4o_A 230 VLAEMPSH-TFVIDLAS 245 (293)
T ss_dssp HHHHSCTT-CEEEECSS
T ss_pred HHHhcCCC-CEEEEecC
Confidence 22233333 35666553
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.027 Score=46.06 Aligned_cols=89 Identities=18% Similarity=0.136 Sum_probs=57.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC---------------CCeE-e--cCccccccHHHHHhccCCc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK---------------GGTE-H--LGLPVFNSVAEAKAETKAN 118 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~---------------~G~~-i--~GvPVy~Sv~ea~~~~~~D 118 (182)
+.++|+|.|++|-.|+.+++.+.+.|.+|+ + ++... .+-+ + .++-=..+++++.+ ++|
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d 85 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVR-G-TARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAA 85 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEE-E-EeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc--CCC
Confidence 457899999999999999999999999888 4 33221 0100 1 12222233555555 789
Q ss_pred EEEEeeCh---------------HHHHHHHHHHHH-cCCCEEEEeCC
Q 030169 119 ASVIYVPP---------------PFAAAAIMEAME-AELDLVVCITE 149 (182)
Q Consensus 119 vaVdfVpp---------------~av~~a~~eAie-~GIk~VV~iTe 149 (182)
+++-.... .....+++.|.+ .+++.+|.+++
T Consensus 86 ~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS 132 (342)
T 1y1p_A 86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 99887532 224456666663 57888776664
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.027 Score=47.33 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=56.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC------------------eEe----cCccccccHHHHHhccC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG------------------TEH----LGLPVFNSVAEAKAETK 116 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G------------------~~i----~GvPVy~Sv~ea~~~~~ 116 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+ + ++..... ..+ .++--..++.++++..+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 102 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVH-G-IVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 102 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEE-E-EECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence 4799999999999999999999998888 4 3322111 001 12211233556666446
Q ss_pred CcEEEEeeCh----------H--------HHHHHHHHHHHcCC---CEEEEeC
Q 030169 117 ANASVIYVPP----------P--------FAAAAIMEAMEAEL---DLVVCIT 148 (182)
Q Consensus 117 ~DvaVdfVpp----------~--------av~~a~~eAie~GI---k~VV~iT 148 (182)
+|++|-.... . .+..+++.|.+.++ +.+|.++
T Consensus 103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S 155 (375)
T 1t2a_A 103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS 155 (375)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 8998876532 1 23456777778887 5666544
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.015 Score=50.31 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=53.5
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeecc---C---------CCCCeEec-----C--------cc-ccccHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVT---P---------KKGGTEHL-----G--------LP-VFNSVAEA 111 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVd---p---------~~~G~~i~-----G--------vP-Vy~Sv~ea 111 (182)
+||.|+|+ |.||..++..+.+ .|.+|. .++ + ...|..+. + +. +..+++++
T Consensus 3 mkI~ViGa-G~~G~~~a~~La~~~G~~V~--~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 79 (404)
T 3c7a_A 3 VKVCVCGG-GNGAHTLSGLAASRDGVEVR--VLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIA 79 (404)
T ss_dssp EEEEEECC-SHHHHHHHHHHTTSTTEEEE--EECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHH
T ss_pred ceEEEECC-CHHHHHHHHHHHhCCCCEEE--EEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHH
Confidence 68999999 9999999999876 486766 444 2 11110000 2 22 55678888
Q ss_pred HhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 112 KAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
.+ ++|++++.||+....+++++...
T Consensus 80 ~~--~aD~Vilav~~~~~~~v~~~l~~ 104 (404)
T 3c7a_A 80 IS--GADVVILTVPAFAHEGYFQAMAP 104 (404)
T ss_dssp HT--TCSEEEECSCGGGHHHHHHHHTT
T ss_pred hC--CCCEEEEeCchHHHHHHHHHHHh
Confidence 77 79999999999998888776543
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0043 Score=54.92 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=63.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe-----------------E---------ec--Cccccc--
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT-----------------E---------HL--GLPVFN-- 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~-----------------~---------i~--GvPVy~-- 106 (182)
..||.|.|+ |+.|+.+.+.+.+. +++|| +-.+|...-. + ++ .++++.
T Consensus 17 ~ikVgI~G~-G~iGr~llR~l~~~p~veiv-aindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 94 (354)
T 3cps_A 17 QGTLGINGF-GRIGRLVLRACMERNDITVV-AINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAK 94 (354)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCSSCEEE-EEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCS
T ss_pred ceEEEEECC-CHHHHHHHHHHHcCCCeEEE-EecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecC
Confidence 368999999 99999999988865 69999 6555321100 0 11 234554
Q ss_pred cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+.+++. .+.++|+++..+|.....+.+...+++|.|.+|+
T Consensus 95 dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVI 135 (354)
T 3cps_A 95 DPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVII 135 (354)
T ss_dssp CGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE
T ss_pred ChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEE
Confidence 455543 1137999999999999999999999999998776
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0093 Score=52.43 Aligned_cols=91 Identities=11% Similarity=-0.030 Sum_probs=64.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccC-------------CCC-----------CeE--ecC--ccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTP-------------KKG-----------GTE--HLG--LPVFN- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp-------------~~~-----------G~~--i~G--vPVy~- 106 (182)
.||.|.|+ |+.|+.+.+.+.+. .++|+ +-.|. ... ++. +.| ++++.
T Consensus 2 ikVgInG~-G~IGr~llR~l~~~~~p~~eiv-aInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~ 79 (337)
T 1rm4_O 2 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-VINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD 79 (337)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSCSEEEE-EEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCCCeEEE-EEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEec
Confidence 58999999 99999999988865 48888 53321 000 111 223 33443
Q ss_pred -cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCC
Q 030169 107 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP 152 (182)
Q Consensus 107 -Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~ 152 (182)
+.+++. ++.++|+++..+|.....+.+...+++|.+.|++ +.-+.
T Consensus 80 ~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~i-Sap~r 126 (337)
T 1rm4_O 80 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI-TAPGK 126 (337)
T ss_dssp SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE-SSCCB
T ss_pred CChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEE-CCccc
Confidence 344432 2337999999999999999999999999999997 65444
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.03 Score=46.15 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-------------CeE----ecCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-------------GTE----HLGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-------------G~~----i~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
|+|+|.|++|..|+.+++.+.+.|.+|+ + ++.... +.. ..++--..+++++.++.++|+++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVI-I-LDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE-E-EecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 4799999999999999999999998888 4 432110 000 01222223355666544689988
Q ss_pred EeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 122 IYVPP------------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 122 dfVpp------------------~av~~a~~eAie~GIk~VV~iT 148 (182)
-.... ..+..+++.|.+.|++.+|.++
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~S 123 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSS 123 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc
Confidence 75421 1233456666677888777655
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0048 Score=54.05 Aligned_cols=86 Identities=15% Similarity=0.050 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccC-------------CCCCeE------------ec--Cccccc--cH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTP-------------KKGGTE------------HL--GLPVFN--SV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp-------------~~~G~~------------i~--GvPVy~--Sv 108 (182)
.||.|.|+ |+.|+.+.+.+.+. +++|+ +-.+. ..-|+. +. .++++. +.
T Consensus 2 ikVgI~G~-G~iGr~l~R~l~~~~~veiv-ain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp 79 (334)
T 3cmc_O 2 VKVGINGF-GRIGRNVFRAALKNPDIEVV-AVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP 79 (334)
T ss_dssp EEEEEESC-SHHHHHHHHHHTTCTTEEEE-EEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred eEEEEECC-CHHHHHHHHHHhCCCCeEEE-EEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence 48999999 99999999988865 58998 54332 111110 11 356663 45
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++. ++.++|+++..+|.....+.+...+++|.|.+|+
T Consensus 80 ~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVI 118 (334)
T 3cmc_O 80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118 (334)
T ss_dssp GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred hhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEE
Confidence 5543 2237999999999999999999999999998776
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0026 Score=54.54 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=69.7
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----------ecCccccccHHHHHhccCCcEEEEee
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----------HLGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----------i~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
-..+++|.|+|+ |.||.-++..+. .|.+++ .+|+...--+ ..++.+..++++ .+ ++|++|..+
T Consensus 9 ~~~~~~V~vIG~-G~MG~~iA~~la-aG~~V~--v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~--~aDlVieav 81 (293)
T 1zej_A 9 HHHHMKVFVIGA-GLMGRGIAIAIA-SKHEVV--LQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VK--DCDIVMEAV 81 (293)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHH-TTSEEE--EECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GG--GCSEEEECC
T ss_pred ccCCCeEEEEee-CHHHHHHHHHHH-cCCEEE--EEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-Hc--CCCEEEEcC
Confidence 345789999999 999999999999 999988 6666531100 014666778876 55 799999999
Q ss_pred ChHHHH-HHHHHHHHcCCCEEEE-eCCCCCHHHHHH-HHHHhcccchhcch
Q 030169 125 PPPFAA-AAIMEAMEAELDLVVC-ITEGIPQHDMVI-NFTRVNILLVAFLN 172 (182)
Q Consensus 125 pp~av~-~a~~eAie~GIk~VV~-iTeG~~~eD~~~-l~~~ak~ipv~~~~ 172 (182)
|.+... +.+..-++.--..|++ -|+.++..++.+ +....+.+.+-|.|
T Consensus 82 pe~~~vk~~l~~~l~~~~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~ 132 (293)
T 1zej_A 82 FEDLNTKVEVLREVERLTNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN 132 (293)
T ss_dssp CSCHHHHHHHHHHHHTTCCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEECCCcCHHHHHHHhhcccceEeEEecC
Confidence 988753 3332223332222443 267899886655 22223445555544
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.013 Score=47.49 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=60.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC---eE--ecCccccccHHHHHhccCCcEEEEeeC--------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG---TE--HLGLPVFNSVAEAKAETKANASVIYVP-------- 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G---~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVp-------- 125 (182)
++|+|.|++|..|+.+++.+.+.|.+|+....++.+.. -+ ..++-=..+++++.+ ++|++|-..-
T Consensus 4 k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~vi~~Ag~~~~~~~~ 81 (267)
T 3rft_A 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVA--GCDGIVHLGGISVEKPFE 81 (267)
T ss_dssp EEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHT--TCSEEEECCSCCSCCCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHc--CCCEEEECCCCcCcCCHH
Confidence 46999999999999999999999988872233332211 01 123433444666676 7999987631
Q ss_pred ------hHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 126 ------PPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 126 ------p~av~~a~~eAie~GIk~VV~iTe 149 (182)
-..+..+++.|.+++.+.||.+++
T Consensus 82 ~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 111 (267)
T 3rft_A 82 QILQGNIIGLYNLYEAARAHGQPRIVFASS 111 (267)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 123446778888899988887664
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0098 Score=53.40 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=67.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEe------cCcccc-----c--------------cHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEH------LGLPVF-----N--------------SVAEAK 112 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i------~GvPVy-----~--------------Sv~ea~ 112 (182)
.||.|.|+||..|+.+.+.+.+++ ++++ |-.. +..-+.. .+.+++ . .+.|+.
T Consensus 4 k~i~ILGsTGSIG~~tldVi~~~~~~~vv-aL~a-~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~ 81 (376)
T 3a06_A 4 RTLVILGATGSIGTQTLDVLKKVKGIRLI-GISF-HSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEML 81 (376)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSCSEEEE-EEEE-SSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHH
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCeEEE-EEEc-cCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHh
Confidence 679999999999999999887664 8888 5411 1100000 122222 1 135666
Q ss_pred hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
...++|+++..++-.+...-+..|+++|.++.+. -..--+..-..+.++++
T Consensus 82 ~~~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLA-NKEsLV~aG~li~~~a~ 132 (376)
T 3a06_A 82 EALKPDITMVAVSGFSGLRAVLASLEHSKRVCLA-NKESLVCGGFLVKKKLK 132 (376)
T ss_dssp HHHCCSEEEECCCSTTHHHHHHHHHHHCSEEEEC-CSHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEe-ChHHHHhhHHHHHHHHH
Confidence 5457999999999999999999999999877774 22222233344444443
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.013 Score=48.13 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+++ .++..... -...+.+.+++...+ +..|...++.+.++++
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~--~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGAAVA--LTYVNAAE-------RAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSCHH-------HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCCHH-------HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 45699999999999999999999999888 33222101 001111212211222 3457788888999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 102 ~~~~~~g~iD~lvn-nAg~ 119 (271)
T 3v2g_A 102 ETVEALGGLDILVN-SAGI 119 (271)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCcEEEE-CCCC
Confidence 88876 7888888 6554
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.01 Score=51.78 Aligned_cols=90 Identities=16% Similarity=0.044 Sum_probs=64.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----------------E---------ec--Cccccc--cH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----------------E---------HL--GLPVFN--SV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----------------~---------i~--GvPVy~--Sv 108 (182)
.||.|.|+ |+.|+.+.+.+.+. +++|+ +-.+....+. . ++ .++++. +.
T Consensus 2 ikVgI~G~-G~iG~~l~R~l~~~~~veiv-~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 79 (330)
T 1gad_O 2 IKVGINGF-GRIGRIVFRAAQKRSDIEIV-AINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 79 (330)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEE-EEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred eEEEEECc-CHHHHHHHHHHHcCCCeEEE-EEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence 48999997 99999999988854 58998 6433321110 0 00 122454 35
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
++++ ...++|+++..+|.....+.+...+++|.+.|++ +..+
T Consensus 80 ~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdl-Sa~~ 122 (330)
T 1gad_O 80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM-TGPS 122 (330)
T ss_dssp GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE-SSCC
T ss_pred hhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEE-CCCC
Confidence 5543 1137999999999999999999999999999987 6555
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.029 Score=51.29 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-CC-ceEEeeccCCCC--CeE---e--cCccc--c-------------------c
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-GT-KMVVGGVTPKKG--GTE---H--LGLPV--F-------------------N 106 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-g~-~IV~AgVdp~~~--G~~---i--~GvPV--y-------------------~ 106 (182)
+.+||.|+|. |.||..++..+.+. |. +++ ++|.... +.. + ...|+ | .
T Consensus 17 ~~mkIaVIGl-G~mG~~lA~~la~~~G~~~V~--~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~t 93 (478)
T 3g79_A 17 PIKKIGVLGM-GYVGIPAAVLFADAPCFEKVL--GFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECT 93 (478)
T ss_dssp SCCEEEEECC-STTHHHHHHHHHHSTTCCEEE--EECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHhCCCCeEE--EEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEe
Confidence 4578999998 99999999999999 98 888 6655543 000 0 12233 2 1
Q ss_pred cHHHHHhccCCcEEEEeeChHH------------HHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHH
Q 030169 107 SVAEAKAETKANASVIYVPPPF------------AAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 107 Sv~ea~~~~~~DvaVdfVpp~a------------v~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+-.++.+ ++|++++.||... +..+++...+. .-..+|+..+.+++.-.+++.+
T Consensus 94 td~ea~~--~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~ 159 (478)
T 3g79_A 94 PDFSRIS--ELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK 159 (478)
T ss_dssp SCGGGGG--GCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred CcHHHHh--cCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence 1244455 6899999998653 55555555443 1222444477888766666553
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.018 Score=45.77 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=54.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChH---------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPP--------- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~--------- 127 (182)
|+|+|.|++|..|+.+++.+.+ |.+|+ + ++...... -..++-=..+++++.+..++|+++......
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~-~-~~r~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~ 77 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVI-K-VYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEK 77 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEE-E-EESSSCCTTCEECCTTSHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCH
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEE-E-ecCCCcCCCCceeccCCHHHHHHHHHhcCCCEEEECCcccChhhhhhCH
Confidence 4799999999999999999985 78888 3 33322110 112222233456666644599999876421
Q ss_pred ---------HHHHHHHHHHHcCCCEEEE
Q 030169 128 ---------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 ---------av~~a~~eAie~GIk~VV~ 146 (182)
....+++.|.+.|.+.|..
T Consensus 78 ~~~~~~n~~~~~~l~~~~~~~~~~iv~~ 105 (273)
T 2ggs_A 78 EKAYKINAEAVRHIVRAGKVIDSYIVHI 105 (273)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhHHHHHHHHHHHHHhCCeEEEE
Confidence 2456777777888755444
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.018 Score=47.47 Aligned_cols=83 Identities=16% Similarity=0.057 Sum_probs=55.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
..++|.|++|-.|+.+++.+.+.|.+++ .++..... . .-...+++ ++...+ +..|.+.++.+.+++++
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~~V~--~~~~~~~~-~-----~~~~~~~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~ 100 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGFDIA--ITGIGDAE-G-----VAPVIAEL-SGLGARVIFLRADLADLSSHQATVDA 100 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCCHH-H-----HHHHHHHH-HHTTCCEEEEECCTTSGGGHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCeEE--EEeCCCHH-H-----HHHHHHHH-HhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 4588999999999999999999999888 44322111 0 00111222 111222 33477888899999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 101 ~~~~~g~iD~lvn-nAg~ 117 (280)
T 4da9_A 101 VVAEFGRIDCLVN-NAGI 117 (280)
T ss_dssp HHHHHSCCCEEEE-ECC-
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 8877 7888888 6666
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.023 Score=47.23 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=56.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCC--C------------CeE--ecCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKK--G------------GTE--HLGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~--~------------G~~--i~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
|||+|.|++|-.|+.+++.+.+. |.+|+ + ++... . +-+ ..++--..+++++.++.++|++|
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 78 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVV-N-IDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM 78 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEE-E-EECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEE-E-EecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence 47999999999999999999987 68888 4 33221 0 000 01222223455666545799998
Q ss_pred EeeCh------------------HHHHHHHHHHHHc--CCC-------EEEEeCC
Q 030169 122 IYVPP------------------PFAAAAIMEAMEA--ELD-------LVVCITE 149 (182)
Q Consensus 122 dfVpp------------------~av~~a~~eAie~--GIk-------~VV~iTe 149 (182)
-.... ..+..+++.|.+. +++ .+|.+++
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS 133 (361)
T 1kew_A 79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIST 133 (361)
T ss_dssp ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEE
T ss_pred ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCC
Confidence 87532 1245567777777 876 6665553
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.007 Score=52.64 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=50.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
.++.|+|+ |+.|+.+++.+..+|++++ +.||..........-.|.+++|+++ +.|++++-+|-.
T Consensus 142 ~tvGIiG~-G~IG~~va~~~~~fg~~v~--~~d~~~~~~~~~~~~~~~~l~ell~--~sDivslh~Plt 205 (334)
T 3kb6_A 142 LTLGVIGT-GRIGSRVAMYGLAFGMKVL--CYDVVKREDLKEKGCVYTSLDELLK--ESDVISLHVPYT 205 (334)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCHHHHHTTCEECCHHHHHH--HCSEEEECCCCC
T ss_pred cEEEEECc-chHHHHHHHhhcccCceee--ecCCccchhhhhcCceecCHHHHHh--hCCEEEEcCCCC
Confidence 46999998 9999999999999999999 8888653211112224778999998 789999988843
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.037 Score=45.61 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---C---CceEEeeccCCCC-C--eEe------cCcc-------ccccHHHHHhccC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---G---TKMVVGGVTPKKG-G--TEH------LGLP-------VFNSVAEAKAETK 116 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g---~~IV~AgVdp~~~-G--~~i------~GvP-------Vy~Sv~ea~~~~~ 116 (182)
|||+|.|++|..|+.+++.+.+. | .+|+ + ++.... + ... .++. =..+++++.. +
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~ 76 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVI-V-LDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR--G 76 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEE-E-EECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT--T
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEE-E-EECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhc--C
Confidence 47999999999999999999986 6 7888 4 433210 0 000 1111 1123445554 7
Q ss_pred CcEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 117 ANASVIYVPP------------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 117 ~DvaVdfVpp------------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
+|++|-.... .....+++.|.+.+++.+|.+++
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS 127 (337)
T 1r6d_A 77 VDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST 127 (337)
T ss_dssp CCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 9999887542 23456777888889977776553
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0025 Score=55.84 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=57.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE-----ecCcccc--------------------ccHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE-----HLGLPVF--------------------NSVAEAK 112 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~-----i~GvPVy--------------------~Sv~ea~ 112 (182)
.||.|.|+ |+.|+.+++.+.+. +++|+ |-.+... +.. ..|+.+| .+.++..
T Consensus 3 ikVgI~G~-G~IGr~v~r~l~~~~~~evv-aV~d~~~-~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~ 79 (343)
T 2yyy_A 3 AKVLINGY-GSIGKRVADAVSMQDDMEVI-GVTKTKP-DFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDII 79 (343)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHSSSEEEE-EEEESSC-SHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTG
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCceEE-EEecCCH-HHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhc
Confidence 48999999 99999999988765 59998 6444321 100 0122332 2333333
Q ss_pred hccCCcEEEEeeChHHHHHHHH-HHHHcCCCEEEEeCCC
Q 030169 113 AETKANASVIYVPPPFAAAAIM-EAMEAELDLVVCITEG 150 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~av~~a~~-eAie~GIk~VV~iTeG 150 (182)
. ++|+++..+|.....+.++ .++++|.+ |+. +.+
T Consensus 80 ~--~vDiV~eatg~~~s~~~a~~~~l~aG~~-VI~-sap 114 (343)
T 2yyy_A 80 E--DADIVVDGAPKKIGKQNLENIYKPHKVK-AIL-QGG 114 (343)
T ss_dssp G--GCSEEEECCCTTHHHHHHHHTTTTTTCE-EEE-CTT
T ss_pred c--CCCEEEECCCccccHHHHHHHHHHCCCE-EEE-CCC
Confidence 3 7899999999998888886 89999955 544 444
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0099 Score=53.37 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=69.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-C-CceEEee---ccCCC--------CCeEe--c---------------Ccccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-G-TKMVVGG---VTPKK--------GGTEH--L---------------GLPVFNS- 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g-~~IV~Ag---Vdp~~--------~G~~i--~---------------GvPVy~S- 107 (182)
.||.|.|+||.+|+.+.+.+.+. + ++++ |- .+..+ .-+.+ . +..++..
T Consensus 5 ~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~-al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~ 83 (388)
T 1r0k_A 5 RTVTVLGATGSIGHSTLDLIERNLDRYQVI-ALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA 83 (388)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTGGGEEEE-EEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred eEEEEECCCeEeHHHHHHHHHhCcCcEEEE-EEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCc
Confidence 68999999999999999988854 4 7776 43 22210 00000 0 1223211
Q ss_pred --HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhc-----ccch
Q 030169 108 --VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN-----ILLV 168 (182)
Q Consensus 108 --v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak-----~ipv 168 (182)
+.++.+.. +|+++..++-......+..|+++|.+++.. -...-+..-.+|.++|+ .+||
T Consensus 84 ~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlA-NKE~lv~~G~~l~~~A~~~gv~liPV 149 (388)
T 1r0k_A 84 DALVEAAMMG-ADWTMAAIIGCAGLKATLAAIRKGKTVALA-NKESLVSAGGLMIDAVREHGTTLLPV 149 (388)
T ss_dssp HHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHHTTSEEEEC-CSHHHHTTHHHHHHHHHHHTCEEEEC
T ss_pred cHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEe-CcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence 33455544 899999998888899999999999887764 34344444556666664 4677
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.059 Score=42.92 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++..... .+++.++...+ +..|...++.+.++++
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGASAV--LLDLPNSG-----------GEAQAKKLGNNCVFAPADVTSEKDVQTALA 78 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECTTSS-----------HHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCcHh-----------HHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 45799999999999999999999999988 44443311 12222211112 2346677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|+ ..|+
T Consensus 79 ~~~~~~g~id~li~-~Ag~ 96 (265)
T 2o23_A 79 LAKGKFGRVDVAVN-CAGI 96 (265)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHCCCCCEEEE-CCcc
Confidence 77765 7888888 5553
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.018 Score=47.76 Aligned_cols=85 Identities=11% Similarity=0.019 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-----CceEEeeccCCCCCeE-----e----cCccccccHHHHHhccC-CcEEEEe
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-----TKMVVGGVTPKKGGTE-----H----LGLPVFNSVAEAKAETK-ANASVIY 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-----~~IV~AgVdp~~~G~~-----i----~GvPVy~Sv~ea~~~~~-~DvaVdf 123 (182)
++|+|.|++|-.|+.+++.+.+.| .+|+ + ++....... + .++-=..+++++++..+ +|+++-+
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~-~-~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~ 79 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVY-G-VARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYV 79 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEE-E-EESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEE-E-EeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEEC
Confidence 579999999999999999999888 8888 4 333221111 0 12222233566666433 9999887
Q ss_pred eC-----h--------HHHHHHHHHHHHc--CCCEEE
Q 030169 124 VP-----P--------PFAAAAIMEAMEA--ELDLVV 145 (182)
Q Consensus 124 Vp-----p--------~av~~a~~eAie~--GIk~VV 145 (182)
.. + ..+..+++.|.+. +++.+|
T Consensus 80 a~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v 116 (364)
T 2v6g_A 80 TWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116 (364)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCCCcchHHHHHHHhHHHHHHHHHHHHHhccccceEE
Confidence 43 1 2345667777777 788876
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.03 Score=51.08 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=61.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC----------------Ce--------EecCccccccHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG----------------GT--------EHLGLPVFNSVAEAK 112 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~----------------G~--------~i~GvPVy~Sv~ea~ 112 (182)
+-+||.|+|+ |.||..++..+.+.|.+|+ .+|.... |. ....+....+++ ++
T Consensus 53 ~i~kVaVIGa-G~MG~~IA~~la~aG~~V~--l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al 128 (460)
T 3k6j_A 53 DVNSVAIIGG-GTMGKAMAICFGLAGIETF--LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KL 128 (460)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GC
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHCCCeEE--EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HH
Confidence 3478999999 9999999999999999988 5555432 00 001233455664 45
Q ss_pred hccCCcEEEEeeChHH-HHHHHHHHHHcCCC--EEE-EeCCCCCHHHHH
Q 030169 113 AETKANASVIYVPPPF-AAAAIMEAMEAELD--LVV-CITEGIPQHDMV 157 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~a-v~~a~~eAie~GIk--~VV-~iTeG~~~eD~~ 157 (182)
+ ++|++|..||.+. ++..+..-++..++ .|+ -.|++++..++.
T Consensus 129 ~--~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia 175 (460)
T 3k6j_A 129 S--NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEIS 175 (460)
T ss_dssp T--TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHH
T ss_pred c--cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHH
Confidence 5 7999999999643 33333333554333 344 348889986543
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.021 Score=46.34 Aligned_cols=84 Identities=19% Similarity=0.105 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
...|+|.|++|..|+.+++.+.+.|.+++ ......... ...+.+..++...++ ..|...++.+.++++
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 96 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVG-VNYAANREA--------ADAVVAAITESGGEAVAIPGDVGNAADIAAMFS 96 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESSCHHH--------HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE-EEcCCChhH--------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 45688889999999999999999999887 322322211 111222222222232 346778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 97 ~~~~~~g~id~li~-nAg~ 114 (272)
T 4e3z_A 97 AVDRQFGRLDGLVN-NAGI 114 (272)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHhCCCCCEEEE-CCCC
Confidence 88776 7888888 5554
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.028 Score=44.31 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++.+....++ ..|.+.++.+.+++++
T Consensus 3 k~vlITGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 73 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALARDGYALA--LGARSVDR--L-----EKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKK 73 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHH
Confidence 4688999999999999999999999887 44433211 0 011222221223333 3477888888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 74 ~~~~~g~id~li~-~Ag~ 90 (235)
T 3l77_A 74 VLERFGDVDVVVA-NAGL 90 (235)
T ss_dssp HHHHHSSCSEEEE-CCCC
T ss_pred HHHhcCCCCEEEE-CCcc
Confidence 8776 7888888 6665
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.047 Score=45.45 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=55.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-----------------eEe----cCccccccHHHHHhccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-----------------TEH----LGLPVFNSVAEAKAETKA 117 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-----------------~~i----~GvPVy~Sv~ea~~~~~~ 117 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+ + ++..... ..+ .++--..+++++.+..++
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEKGYEVH-G-IKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-E-ECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE-E-EECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 5799999999999999999999998888 4 3332110 001 011112235566664468
Q ss_pred cEEEEeeCh------------------HHHHHHHHHHHHcCC---CEEEEeC
Q 030169 118 NASVIYVPP------------------PFAAAAIMEAMEAEL---DLVVCIT 148 (182)
Q Consensus 118 DvaVdfVpp------------------~av~~a~~eAie~GI---k~VV~iT 148 (182)
|+++-.... ..+..+++.|.++++ +.+|.++
T Consensus 80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S 131 (372)
T 1db3_A 80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS 131 (372)
T ss_dssp SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence 998876421 134556777888887 6666555
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.053 Score=50.07 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=57.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------------Ee----cCccccccHHHHHhccCCcEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------------EH----LGLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------------~i----~GvPVy~Sv~ea~~~~~~Dva 120 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ + ++...... .+ .++--..+++++.++.++|++
T Consensus 11 ~~~ilVTGatG~IG~~l~~~L~~~G~~V~-~-~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~V 88 (699)
T 1z45_A 11 SKIVLVTGGAGYIGSHTVVELIENGYDCV-V-ADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSV 88 (699)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEE-E-EECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEE
Confidence 46899999999999999999999998888 4 43322110 00 122222345566654578999
Q ss_pred EEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 121 VIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 121 VdfVpp------------------~av~~a~~eAie~GIk~VV~iT 148 (182)
|-.... ..+..+++.|.+.|++.+|.++
T Consensus 89 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~S 134 (699)
T 1z45_A 89 IHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSS 134 (699)
T ss_dssp EECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 877532 1234566667778988777655
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.078 Score=43.29 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=58.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHH---hccCCc---EEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK---AETKAN---ASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~---~~~~~D---vaVdfVpp~av~~ 131 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... .. .....+++.. ++...+ +..|.+.++.+.+
T Consensus 6 ~k~~lVTGas~GIG~aia~~la~~G~~V~--~~~r~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 79 (274)
T 3e03_A 6 GKTLFITGASRGIGLAIALRAARDGANVA--IAAKSAVA--NP--KLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRA 79 (274)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCCSC--CT--TSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEE--EEeccchh--hh--hhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 35689999999999999999999999988 44433311 11 1112232222 211222 3457788899999
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030169 132 AIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~ 151 (182)
++++..+. ++..+|+ ..|+
T Consensus 80 ~~~~~~~~~g~iD~lvn-nAG~ 100 (274)
T 3e03_A 80 AVAATVDTFGGIDILVN-NASA 100 (274)
T ss_dssp HHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHHcCCCCEEEE-CCCc
Confidence 99988876 7888888 6664
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.004 Score=46.38 Aligned_cols=65 Identities=6% Similarity=-0.007 Sum_probs=48.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E---ecCcc--ccccHHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E---HLGLP--VFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~---i~GvP--Vy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
..+|+|+|+ |.||+.+++.+.+.|.+++ .+++....- + ..+.+ .+++++++.+ ++|+++..+|..
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~--v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~Divi~at~~~ 91 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVT--VAGRNIDHVRAFAEKYEYEYVLINDIDSLIK--NNDVIITATSSK 91 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEE--EEESCHHHHHHHHHHHTCEEEECSCHHHHHH--TCSEEEECSCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE--EEcCCHHHHHHHHHHhCCceEeecCHHHHhc--CCCEEEEeCCCC
Confidence 678999998 9999999999988898855 555443110 1 11333 5678888888 799999999976
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.06 Score=43.70 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=56.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ .++..... ....+.+..++...++ ..|...++.+.++++
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~~V~--~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 99 (271)
T 4iin_A 29 GKNVLITGASKGIGAEIAKTLASMGLKVW--INYRSNAE-------VADALKNELEEKGYKAAVIKFDAASESDFIEAIQ 99 (271)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESSCHH-------HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCCHH-------HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 35699999999999999999999999988 34332211 1112222222222232 346778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|+ ..|+
T Consensus 100 ~~~~~~g~id~li~-nAg~ 117 (271)
T 4iin_A 100 TIVQSDGGLSYLVN-NAGV 117 (271)
T ss_dssp HHHHHHSSCCEEEE-CCCC
T ss_pred HHHHhcCCCCEEEE-CCCc
Confidence 88776 7888888 6665
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.032 Score=47.01 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=26.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~ 56 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVH 56 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEE
Confidence 4799999999999999999999998888
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.16 Score=41.64 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=57.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCCC-----------eEe----cCccccccHHHHHhccCCcEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKGG-----------TEH----LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~G-----------~~i----~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
.++|+|.|++|-.|+.+++.+++.|.+|+ +.+ ++.... ..+ .++-=..+++++++ ++|+++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vi 85 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVN-TTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIA--GCDFVF 85 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEE-EEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHT--TCSEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEE-EEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHc--CCCEEE
Confidence 46899999999999999999999999988 533 332110 000 12222344666776 689888
Q ss_pred EeeC--------h---------HHHHHHHHHHHHcC-CCEEEEeCC
Q 030169 122 IYVP--------P---------PFAAAAIMEAMEAE-LDLVVCITE 149 (182)
Q Consensus 122 dfVp--------p---------~av~~a~~eAie~G-Ik~VV~iTe 149 (182)
-... + ..+..+++.|.+++ ++.+|.+++
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS 131 (338)
T 2rh8_A 86 HVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS 131 (338)
T ss_dssp EESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred EeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence 6431 1 11345566677775 888877564
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.063 Score=44.27 Aligned_cols=88 Identities=11% Similarity=0.019 Sum_probs=55.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-------CceEEeeccCCCC------CeEe----cCccccccHHHHHhccCCcEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-------TKMVVGGVTPKKG------GTEH----LGLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-------~~IV~AgVdp~~~------G~~i----~GvPVy~Sv~ea~~~~~~Dva 120 (182)
.++|+|.|++|-.|+.+++.+.+.| .+|+ +++.... +..+ .++-=..+++++.+ .++|++
T Consensus 14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~--~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~~d~v 90 (342)
T 2hrz_A 14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFT--LIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVE-ARPDVI 90 (342)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEE--EEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHH-TCCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEE--EEEccCCccccccCCceeEEEcCCCCHHHHHHHHh-cCCCEE
Confidence 4689999999999999999999988 6888 3333221 1111 12322344666653 279999
Q ss_pred EEeeChH-----------------HHHHHHHHHHHcC-----CCEEEEeC
Q 030169 121 VIYVPPP-----------------FAAAAIMEAMEAE-----LDLVVCIT 148 (182)
Q Consensus 121 VdfVpp~-----------------av~~a~~eAie~G-----Ik~VV~iT 148 (182)
|-..... .+..+++.|.+.+ ++.+|.++
T Consensus 91 ih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S 140 (342)
T 2hrz_A 91 FHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS 140 (342)
T ss_dssp EECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred EECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence 9876421 1334556666665 77776644
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.15 Score=42.03 Aligned_cols=83 Identities=11% Similarity=0.072 Sum_probs=56.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+++ .++..... --....+..++...++ ..|...++.+.++++
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~~V~--~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGANIA--IAYLDEEG-------DANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSCHH-------HHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCchH-------HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 45799999999999999999999999988 33333211 0112233333323333 246778888999998
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..+|+ ..|
T Consensus 118 ~~~~~~g~iD~lvn-nAg 134 (291)
T 3ijr_A 118 ETVRQLGSLNILVN-NVA 134 (291)
T ss_dssp HHHHHHSSCCEEEE-CCC
T ss_pred HHHHHcCCCCEEEE-CCC
Confidence 88876 7888887 444
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0079 Score=50.10 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=50.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eE---ecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
.++|+|+|+ |.||+.++..+.+.|.+|+ .+|+.... ++ ..|+.++++++++.+ ++|++|..+|+...
T Consensus 129 ~~~v~iiGa-G~~g~aia~~L~~~g~~V~--v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~aDiVi~atp~~~~ 199 (275)
T 2hk9_A 129 EKSILVLGA-GGASRAVIYALVKEGAKVF--LWNRTKEKAIKLAQKFPLEVVNSPEEVID--KVQVIVNTTSVGLK 199 (275)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHHTCEEE--EECSSHHHHHHHTTTSCEEECSCGGGTGG--GCSEEEECSSTTSS
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCCEEE--EEECCHHHHHHHHHHcCCeeehhHHhhhc--CCCEEEEeCCCCCC
Confidence 468999998 9999999999998898776 55554210 01 125667778888777 79999999998763
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.081 Score=44.53 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=26.7
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
..+-++|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~ 39 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVC 39 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEE
Confidence 34557899999999999999999999998888
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.11 Score=41.84 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=55.9
Q ss_pred CceEEEEccCC-CCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITG-KNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tG-kmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
..+++|.|++| ..|+.+++.+.+.|.+|+ .++..... .-...+++.+....+ +..|...++.+.+++
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~--~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~ 92 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVV--ISDYHERR-------LGETRDQLADLGLGRVEAVVCDVTSTEAVDALI 92 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEE--EecCCHHH-------HHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHH
Confidence 45799999998 599999999999999988 44443211 001122221211122 335677888899999
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 93 ~~~~~~~g~id~li~-~Ag~ 111 (266)
T 3o38_A 93 TQTVEKAGRLDVLVN-NAGL 111 (266)
T ss_dssp HHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHhCCCcEEEE-CCCc
Confidence 888876 7888888 6665
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.073 Score=42.37 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ .++..... . -...+++.+ ...+ +..|...++.+.++++
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGAAVV--VADINAEA--A-----EAVAKQIVA-DGGTAISVAVDVSDPESAKAMAD 78 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHH-TTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEcCCHHH--H-----HHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHH
Confidence 45689999999999999999999999988 44443211 0 001122111 1122 3457788888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~g~id~li~-~Ag~ 96 (253)
T 3qiv_A 79 RTLAEFGGIDYLVN-NAAI 96 (253)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 88876 7888888 6666
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.12 Score=41.33 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++.... + ...+++ ++...++ ..|...++.+.++++
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~--~~~r~~~-~--------~~~~~l-~~~~~~~~~~~~D~~~~~~v~~~~~ 71 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGANIV--LNGFGDP-A--------PALAEI-ARHGVKAVHHPADLSDVAQIEALFA 71 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEE--EECSSCC-H--------HHHHHH-HTTSCCEEEECCCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCch-H--------HHHHHH-HhcCCceEEEeCCCCCHHHHHHHHH
Confidence 35689999999999999999999999988 4444331 0 012222 2112222 246677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 72 ~~~~~~g~id~lv~-~Ag~ 89 (255)
T 2q2v_A 72 LAEREFGGVDILVN-NAGI 89 (255)
T ss_dssp HHHHHHSSCSEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87766 7898988 6554
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.057 Score=43.41 Aligned_cols=83 Identities=20% Similarity=0.164 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
.+.++|.|++|-.|+.+++.+.+.|.+++..+.++.... +. .+++.. ++. +..|.+.++.+.++++++
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~--------~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~ 75 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGE-EP--------AAELGA--AVRFRNADVTNEADATAALAFA 75 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------------CEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-HH--------HHHhCC--ceEEEEccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999882233332211 11 111111 222 335778888999999888
Q ss_pred HHc--CCCEEEEeCCCCC
Q 030169 137 MEA--ELDLVVCITEGIP 152 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~~ 152 (182)
.+. ++..+|+ ..|+.
T Consensus 76 ~~~~g~id~lv~-nAg~~ 92 (257)
T 3tpc_A 76 KQEFGHVHGLVN-CAGTA 92 (257)
T ss_dssp HHHHSCCCEEEE-CCCCC
T ss_pred HHHcCCCCEEEE-CCCCC
Confidence 876 7888888 66653
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.077 Score=43.14 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeec--cCCCCCe------------Ee----cCccccccHHHHHhccCCcEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGV--TPKKGGT------------EH----LGLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV--dp~~~G~------------~i----~GvPVy~Sv~ea~~~~~~Dva 120 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+ +.+ ++....+ .+ .++-=..+++++++ ++|++
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v 78 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGYSVN-TTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIE--GCVGI 78 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEE-EECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHT--TCSEE
T ss_pred CEEEEECChhHHHHHHHHHHHHCCCEEE-EEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHc--CCCEE
Confidence 5799999999999999999999999988 544 3321000 00 12222234666666 78988
Q ss_pred EEeeCh-----------------HHHHHHHHHHHHc-CCCEEEEeCC
Q 030169 121 VIYVPP-----------------PFAAAAIMEAMEA-ELDLVVCITE 149 (182)
Q Consensus 121 VdfVpp-----------------~av~~a~~eAie~-GIk~VV~iTe 149 (182)
+-...+ ..+..+++.|.+. |++.+|.+++
T Consensus 79 ih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS 125 (322)
T 2p4h_X 79 FHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSS 125 (322)
T ss_dssp EECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred EEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence 875421 1123445566666 7887776553
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.063 Score=43.92 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=56.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+|+ .++..... .-...+++.+....+ +..|.+.++.+.++++
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~--~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 97 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGCHTV--IASRSLPR-------VLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVD 97 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEE--EEESCHHH-------HHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-------HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 45699999999999999999999999888 44433211 011122222211222 3347788899999999
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..+|+ ..|
T Consensus 98 ~~~~~~g~id~lv~-nAg 114 (277)
T 4fc7_A 98 QALKEFGRIDILIN-CAA 114 (277)
T ss_dssp HHHHHHSCCCEEEE-CCC
T ss_pred HHHHHcCCCCEEEE-CCc
Confidence 88877 7888888 655
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.099 Score=42.12 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=56.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++.... ..++..++...+ +..|...++.+.++++
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 74 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVA--IADIDIE-----------RARQAAAEIGPAAYAVQMDVTRQDSIDAAIA 74 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhCCCceEEEeeCCCHHHHHHHHH
Confidence 35699999999999999999999999988 4443221 122222211112 3457788888999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 75 ~~~~~~g~id~lv~-~Ag~ 92 (259)
T 4e6p_A 75 ATVEHAGGLDILVN-NAAL 92 (259)
T ss_dssp HHHHHSSSCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 88877 7888888 6665
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.038 Score=42.36 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=27.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
+||+|.|++|..|+.+++.+. .|.+++ .++..
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~--~~~r~ 35 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVI--TAGRH 35 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEE--EEESS
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEE--EEecC
Confidence 589999999999999999999 899888 44443
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.015 Score=52.97 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=61.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe--------------c-------------CccccccHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH--------------L-------------GLPVFNSVAE 110 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i--------------~-------------GvPVy~Sv~e 110 (182)
.+||.|+|+ |.||..++..+.+.|.+|+ .+|+....-+. . .+....+++
T Consensus 5 ~~kVgVIGa-G~MG~~IA~~la~aG~~V~--l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 80 (483)
T 3mog_A 5 VQTVAVIGS-GTMGAGIAEVAASHGHQVL--LYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH- 80 (483)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCCEE--EECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCeEE--EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-
Confidence 357999999 9999999999999999888 55554311000 1 233455665
Q ss_pred HHhccCCcEEEEeeChHHH--HHHHHHHHHc-CCCEEE-EeCCCCCHHHHH
Q 030169 111 AKAETKANASVIYVPPPFA--AAAIMEAMEA-ELDLVV-CITEGIPQHDMV 157 (182)
Q Consensus 111 a~~~~~~DvaVdfVpp~av--~~a~~eAie~-GIk~VV-~iTeG~~~eD~~ 157 (182)
..+ ++|++|..+|++.. .++..+..+. .-..|+ ..|.+++..++.
T Consensus 81 ~~~--~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia 129 (483)
T 3mog_A 81 ALA--AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIA 129 (483)
T ss_dssp GGG--GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHT
T ss_pred Hhc--CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHH
Confidence 355 69999999998742 3555554333 223344 348999987543
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.12 Score=42.21 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=53.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE----ecCcccc--------ccHHHHHhccCCcEEEEee-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE----HLGLPVF--------NSVAEAKAETKANASVIYV- 124 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~----i~GvPVy--------~Sv~ea~~~~~~DvaVdfV- 124 (182)
++|+|.|++|..|+.+++.+.+. |.+|+ + ++......+ ..++.++ ..++++.+ ++|++|-..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~d~vih~A~ 76 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVY-G-LDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVA 76 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEE-E-EESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEECBC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEE-E-EeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhcc--CCCEEEEccc
Confidence 47999999999999999999987 78888 4 333221100 0112111 12455555 689998753
Q ss_pred --ChH---------------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 125 --PPP---------------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 125 --pp~---------------av~~a~~eAie~GIk~VV~iTe 149 (182)
.+. ....+++.|.+.| +.+|.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS 117 (345)
T 2bll_A 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPST 117 (345)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECC
T ss_pred ccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEec
Confidence 221 2345667777888 66665454
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.15 Score=41.43 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=52.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++..... + . ++. +..|...++.+.++++++
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~----~-----------~--~~~~~~~Dl~~~~~v~~~~~~~ 68 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGSKVI--DLSIHDPG----E-----------A--KYDHIECDVTNPDQVKASIDHI 68 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEE--EEESSCCC----S-----------C--SSEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEecCccc----C-----------C--ceEEEEecCCCHHHHHHHHHHH
Confidence 45699999999999999999999999988 34433211 0 0 111 234566778888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 69 ~~~~g~iD~lv~-~Ag~ 84 (264)
T 2dtx_A 69 FKEYGSISVLVN-NAGI 84 (264)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 6888888 5554
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.049 Score=44.90 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=53.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCC-Ce----------Ee----cCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKG-GT----------EH----LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~-G~----------~i----~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
++|+|.|++|-.|+.+++.+.+. |.+|+ +++.... +. .+ .++-=..+++++.+ ++|++|
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi 80 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVT--VLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAIV 80 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEE--EEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEEE
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEE--EEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhh--cCCEEE
Confidence 57999999999999999999987 78888 4433210 00 00 11111223556666 679988
Q ss_pred EeeChH------------------HHHHHHHHHHHcCCCEEEE
Q 030169 122 IYVPPP------------------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 122 dfVpp~------------------av~~a~~eAie~GIk~VV~ 146 (182)
-..... .+..+++.|.+.|++.|.+
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~ 123 (348)
T 1oc2_A 81 HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHV 123 (348)
T ss_dssp ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEE
T ss_pred ECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 875421 1456677788888854444
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.12 Score=42.52 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=57.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCC----------C--eEe----cCccccccHHHHHhccCCcEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKG----------G--TEH----LGLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~----------G--~~i----~GvPVy~Sv~ea~~~~~~Dva 120 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ +.+ ++... + ..+ .++-=..+++++++ ++|++
T Consensus 5 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~V 81 (337)
T 2c29_D 5 SETVCVTGASGFIGSWLVMRLLERGYTVR-ATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK--GCTGV 81 (337)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT--TCSEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEE-EEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc--CCCEE
Confidence 46799999999999999999999999988 533 33210 0 001 12332344667776 68988
Q ss_pred EEeeC--------hH---------HHHHHHHHHHHcC-CCEEEEeCC
Q 030169 121 VIYVP--------PP---------FAAAAIMEAMEAE-LDLVVCITE 149 (182)
Q Consensus 121 VdfVp--------p~---------av~~a~~eAie~G-Ik~VV~iTe 149 (182)
+-... +. .+..+++.|.+++ ++.+|.+++
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS 128 (337)
T 2c29_D 82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS 128 (337)
T ss_dssp EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence 76431 11 1245666677777 888877564
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.024 Score=47.37 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe---EecCccccc------cHHHHHhcc---CCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT---EHLGLPVFN------SVAEAKAET---KANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~---~i~GvPVy~------Sv~ea~~~~---~~DvaVdfV 124 (182)
.++|+|.|++|-.|+.+++.+.+.| .+|+ +++....+. ...++.+.. +++++.+.. ++|++|-..
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~--~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A 123 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGITDIL--VVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEG 123 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCCEE--EEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCcEEE--EEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEECC
Confidence 4689999999999999999999999 8888 444433221 111222222 244444421 589998875
Q ss_pred Ch----------------HHHHHHHHHHHHcCCCEEEE
Q 030169 125 PP----------------PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 125 pp----------------~av~~a~~eAie~GIk~VV~ 146 (182)
.. ..+..+++.|.+.|++.|.+
T Consensus 124 ~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~ 161 (357)
T 2x6t_A 124 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYA 161 (357)
T ss_dssp SCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccCCccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 32 12456777788888854444
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.053 Score=43.38 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+|+ .++.... ..+++.++... -+..|.+.++.+.++++
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGAKVV--IVDRDKA-----------GAERVAGEIGDAALAVAADISKEADVDAAVE 75 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHHCTTEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEcCCHH-----------HHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence 35699999999999999999999999988 4444321 12222222111 23456788888999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 76 ~~~~~~g~id~li~-~Ag~ 93 (261)
T 3n74_A 76 AALSKFGKVDILVN-NAGI 93 (261)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHhcCCCCEEEE-CCcc
Confidence 88877 7888887 6554
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.067 Score=43.02 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=51.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
++|+|.|++|..|+.+++.+.+.|.+|+ .++..... ... ....+| ...++.+.++++++.+
T Consensus 23 k~vlITGas~gIG~~la~~l~~~G~~V~--~~~r~~~~--~~~-----------~~~~~d----~~d~~~v~~~~~~~~~ 83 (251)
T 3orf_A 23 KNILVLGGSGALGAEVVKFFKSKSWNTI--SIDFRENP--NAD-----------HSFTIK----DSGEEEIKSVIEKINS 83 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSCCT--TSS-----------EEEECS----CSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCccc--ccc-----------cceEEE----eCCHHHHHHHHHHHHH
Confidence 5699999999999999999999999988 44433311 110 111234 6778888888888887
Q ss_pred c--CCCEEEEeCCCC
Q 030169 139 A--ELDLVVCITEGI 151 (182)
Q Consensus 139 ~--GIk~VV~iTeG~ 151 (182)
. ++..+|+ ..|+
T Consensus 84 ~~g~iD~li~-~Ag~ 97 (251)
T 3orf_A 84 KSIKVDTFVC-AAGG 97 (251)
T ss_dssp TTCCEEEEEE-CCCC
T ss_pred HcCCCCEEEE-CCcc
Confidence 6 4566776 6663
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.13 Score=41.17 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=55.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++.... .++++.++..+. +..|...++.+.++++++
T Consensus 5 ~k~vlVTGas~giG~~ia~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (245)
T 1uls_A 5 DKAVLITGAAHGIGRATLELFAKEGARLV--ACDIEEG-----------PLREAAEAVGAHPVVMDVADPASVERGFAEA 71 (245)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHTTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHcCCEEEEecCCCHHHHHHHHHHH
Confidence 35699999999999999999999999988 4433221 122332221222 234677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 72 ~~~~g~id~lvn-~Ag~ 87 (245)
T 1uls_A 72 LAHLGRLDGVVH-YAGI 87 (245)
T ss_dssp HHHHSSCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 6888888 6664
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.024 Score=45.80 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=53.7
Q ss_pred eEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe---EecCccccc------cHHHHHhcc---CCcEEEEeeCh
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT---EHLGLPVFN------SVAEAKAET---KANASVIYVPP 126 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~---~i~GvPVy~------Sv~ea~~~~---~~DvaVdfVpp 126 (182)
||+|.|++|..|+.+++.+.+.| .+|+ +++...... ...++.+.. +++++.+.. ++|+++-....
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~--~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 78 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDIL--VVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAC 78 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEE--EEECCSSGGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEE--EEccCCCCchhhhcCcceeccccccHHHHHHHHhccccCCCcEEEECccc
Confidence 58999999999999999999989 8888 444433221 011222222 244444421 48999887532
Q ss_pred H----------------HHHHHHHHHHHcCCCEEEE
Q 030169 127 P----------------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 127 ~----------------av~~a~~eAie~GIk~VV~ 146 (182)
. .+..+++.|.++|++.|..
T Consensus 79 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 114 (310)
T 1eq2_A 79 SSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYA 114 (310)
T ss_dssp CCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1 2456777788888854444
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.089 Score=42.88 Aligned_cols=81 Identities=21% Similarity=0.145 Sum_probs=57.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... ++++.++. ++ -+..|.+.++.+.++++
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 77 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGARVV--LADLPETD-----------LAGAAASVGRGAVHHVVDLTNEVSVRALID 77 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECTTSC-----------HHHHHHHHCTTCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEcCCHHH-----------HHHHHHHhCCCeEEEECCCCCHHHHHHHHH
Confidence 35689999999999999999999999988 44443311 22222211 12 23457788999999999
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030169 135 EAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~ 152 (182)
++.+. ++..+|+ ..|+.
T Consensus 78 ~~~~~~g~id~lv~-nAg~~ 96 (271)
T 3tzq_B 78 FTIDTFGRLDIVDN-NAAHS 96 (271)
T ss_dssp HHHHHHSCCCEEEE-CCCCC
T ss_pred HHHHHcCCCCEEEE-CCCCC
Confidence 88877 7888888 65653
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.14 Score=41.05 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++.... ..++..++...+ +..|.+.++.+.++++
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 72 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGATVI--VSDINAE-----------GAKAAAASIGKKARAIAADISDPGSVKALFA 72 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EECSCHH-----------HHHHHHHHHCTTEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 35689999999999999999999999988 4444321 122222211122 2346678888999988
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 73 ~~~~~~g~id~lv~-nAg~ 90 (247)
T 3rwb_A 73 EIQALTGGIDILVN-NASI 90 (247)
T ss_dssp HHHHHHSCCSEEEE-CCCC
T ss_pred HHHHHCCCCCEEEE-CCCC
Confidence 88876 7888888 6554
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.025 Score=46.94 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=52.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--e------cCcccc-ccHH-HHHhccCCcEEEEeeCh
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--H------LGLPVF-NSVA-EAKAETKANASVIYVPP 126 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i------~GvPVy-~Sv~-ea~~~~~~DvaVdfVpp 126 (182)
+.++|+|.|++|..|+.+++.+.+.|.+|+ + ++....+.. . .++.++ .++. ++.. ++|++|-....
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--~~d~vih~A~~ 101 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGHEVT-V-VDNFFTGRKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASP 101 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEE-E-EECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCC--CCSEEEECCSC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCCEEE-E-EeCCCccchhhhhhhccCCceEEEeCccCChhhc--CCCEEEECccc
Confidence 357899999999999999999999999988 4 443221100 0 111111 1121 1222 68998876532
Q ss_pred H------------------HHHHHHHHHHHcCCCEEEE
Q 030169 127 P------------------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 127 ~------------------av~~a~~eAie~GIk~VV~ 146 (182)
. ....+++.|.+.|++.|.+
T Consensus 102 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 139 (343)
T 2b69_A 102 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLA 139 (343)
T ss_dssp CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 1 1345677777888865554
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.038 Score=42.61 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=29.2
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.+.+..+|+|.|++|..|..+++.+...|.+++
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~ 67 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIY 67 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEE
Confidence 355678899999999999999999999998888
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.16 Score=41.81 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=57.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCc--cccccHHHHHhccCCc---EEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGL--PVFNSVAEAKAETKAN---ASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~Gv--PVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a 132 (182)
...++|.|++|..|+.+++.+.+.|.+|+ .++..... ...+ .+....+++ ++...+ +..|.+.++.+.++
T Consensus 9 ~k~vlVTGas~GIG~aia~~l~~~G~~V~--~~~r~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 9 GKTMFISGGSRGIGLAIAKRVAADGANVA--LVAKSAEP--HPKLPGTIYTAAKEI-EEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHTTTCEEE--EEESCCSC--CSSSCCCHHHHHHHH-HHHTSEEEEEECCTTSHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEECChhh--hhhhhHHHHHHHHHH-HhcCCcEEEEECCCCCHHHHHHH
Confidence 45689999999999999999999999988 44443321 1111 011112222 111222 23467888899999
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
++++.+. ++..+|+ ..|+
T Consensus 84 ~~~~~~~~g~id~lvn-nAg~ 103 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVN-NASA 103 (285)
T ss_dssp HHHHHHHHSCCSEEEE-CCCC
T ss_pred HHHHHHHcCCCCEEEE-CCCC
Confidence 9988877 7888888 5553
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.04 Score=49.47 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=58.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-------------------------ecCccccccHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-------------------------HLGLPVFNSVAEAK 112 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-------------------------i~GvPVy~Sv~ea~ 112 (182)
.+||.|+|+ |.||..++..+...|.+|+ .+|+....-+ .....+..++ +..
T Consensus 37 ~~kV~VIGa-G~MG~~iA~~la~~G~~V~--l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~ 112 (463)
T 1zcj_A 37 VSSVGVLGL-GTMGRGIAISFARVGISVV--AVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KEL 112 (463)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTCEEE--EECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGG
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEE--EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHH
Confidence 467999999 9999999999999998888 6555431000 0001234556 344
Q ss_pred hccCCcEEEEeeChHHH--HHHHHHHHHc-CCC-EEEEeCCCCCHHHHH
Q 030169 113 AETKANASVIYVPPPFA--AAAIMEAMEA-ELD-LVVCITEGIPQHDMV 157 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~av--~~a~~eAie~-GIk-~VV~iTeG~~~eD~~ 157 (182)
+ ++|++|..||.+.. .+++.+.... .-. .++.-|.+++..++.
T Consensus 113 ~--~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la 159 (463)
T 1zcj_A 113 S--TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIA 159 (463)
T ss_dssp T--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHH
T ss_pred C--CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHH
Confidence 5 79999999997642 3444333222 112 333347788776443
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.095 Score=41.56 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=54.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++..... . . ...+++.++...+ +..|...++.+.++++
T Consensus 14 ~k~vlITGasggiG~~~a~~l~~~G~~V~--~~~r~~~~--~--~---~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~ 84 (265)
T 1h5q_A 14 NKTIIVTGGNRGIGLAFTRAVAAAGANVA--VIYRSAAD--A--V---EVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ 84 (265)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEE--EEESSCTT--H--H---HHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEE--EEeCcchh--h--H---HHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHH
Confidence 46799999999999999999999998888 44443211 0 0 1123332221222 2346677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 85 ~~~~~~~~id~li~-~Ag~ 102 (265)
T 1h5q_A 85 QIDADLGPISGLIA-NAGV 102 (265)
T ss_dssp HHHHHSCSEEEEEE-CCCC
T ss_pred HHHHhcCCCCEEEE-CCCc
Confidence 87764 3666776 5554
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.15 Score=42.60 Aligned_cols=93 Identities=26% Similarity=0.258 Sum_probs=55.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEE---EEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS---VIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dva---VdfVpp~av~~a~~ 134 (182)
...++|.|++|-.|+.+++.+.+.|.+|+..+.+....+.....-.-...+.+.+++...++. .|...++.+.++++
T Consensus 27 gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 106 (322)
T 3qlj_A 27 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLIQ 106 (322)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 356888999999999999999999999882233221111000000111111121221122332 35677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 107 ~~~~~~g~iD~lv~-nAg~ 124 (322)
T 3qlj_A 107 TAVETFGGLDVLVN-NAGI 124 (322)
T ss_dssp HHHHHHSCCCEEEC-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88876 7888887 6564
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.15 Score=40.88 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++.....++ .+ .. -+..|...++.+.++++++.
T Consensus 7 ~k~vlVTGas~giG~~ia~~l~~~G~~V~--~~~r~~~~~~-~~----------~~----~~~~D~~d~~~~~~~~~~~~ 69 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYATALAFVEAGAKVT--GFDQAFTQEQ-YP----------FA----TEVMDVADAAQVAQVCQRLL 69 (250)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCCCSSC-CS----------SE----EEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCchhhhc-CC----------ce----EEEcCCCCHHHHHHHHHHHH
Confidence 35699999999999999999999999988 4444321100 01 00 12345667888888888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|+ ..|+
T Consensus 70 ~~~g~id~lv~-~Ag~ 84 (250)
T 2fwm_X 70 AETERLDALVN-AAGI 84 (250)
T ss_dssp HHCSCCCEEEE-CCCC
T ss_pred HHcCCCCEEEE-CCCc
Confidence 66 6888888 5554
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.04 Score=48.54 Aligned_cols=86 Identities=14% Similarity=0.026 Sum_probs=62.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh----CCceEEeeccC-------------CCC----------CeE--ec--Cccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY----GTKMVVGGVTP-------------KKG----------GTE--HL--GLPVFN- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~----g~~IV~AgVdp-------------~~~----------G~~--i~--GvPVy~- 106 (182)
.||.|.|| |+.|+.+.+.+.+. +++|| |--|+ ..- |+. ++ .++|+.
T Consensus 2 ikVaInGf-GrIGr~v~r~l~~~~~~~~~evv-aInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~ 79 (335)
T 1obf_O 2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIV-AINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN 79 (335)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEE-EEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCCCCcEEE-EEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEc
Confidence 58999999 99999999988876 59998 65553 111 111 12 356663
Q ss_pred -cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 -Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+.+++. .+.++|+++..++.....+.+...+++|.+.|++
T Consensus 80 ~dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVvi 121 (335)
T 1obf_O 80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII 121 (335)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEE
Confidence 455543 2247999999988888888889999999998887
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.12 Score=42.25 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=55.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
+..+|+|.|++|-.|+.+++.+.+.|.+|+ .++..... ..+ . ..-+..|.+.++.+.++++++
T Consensus 13 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~--~~~r~~~~--~~~-----------~--~~~~~~Dv~~~~~v~~~~~~~ 75 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGLAVVDALVRYGAKVV--SVSLDEKS--DVN-----------V--SDHFKIDVTNEEEVKEAVEKT 75 (269)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEE--EEESCC----CTT-----------S--SEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCCchh--ccC-----------c--eeEEEecCCCHHHHHHHHHHH
Confidence 456788999999999999999999999988 44433311 110 0 012345778889999999888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 76 ~~~~g~iD~lv~-nAg~ 91 (269)
T 3vtz_A 76 TKKYGRIDILVN-NAGI 91 (269)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 877 7888888 6664
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.16 Score=40.01 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC-CCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK-KGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~-~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++.. ... . -...+++.+ ...+ +..|...++.+.+++
T Consensus 7 ~k~vlVTGasggiG~~~a~~l~~~G~~V~--~~~r~~~~~--~-----~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~ 76 (258)
T 3afn_B 7 GKRVLITGSSQGIGLATARLFARAGAKVG--LHGRKAPAN--I-----DETIASMRA-DGGDAAFFAADLATSEACQQLV 76 (258)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESSCCTT--H-----HHHHHHHHH-TTCEEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EECCCchhh--H-----HHHHHHHHh-cCCceEEEECCCCCHHHHHHHH
Confidence 35799999999999999999999999988 44443 211 0 001122211 1222 234667788888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 77 ~~~~~~~g~id~vi~-~Ag~ 95 (258)
T 3afn_B 77 DEFVAKFGGIDVLIN-NAGG 95 (258)
T ss_dssp HHHHHHHSSCSEEEE-CCCC
T ss_pred HHHHHHcCCCCEEEE-CCCC
Confidence 777765 7888888 5554
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.16 Score=43.63 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=58.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
...|+|.|++|..|+.+++.+.+.|.+|+..+-++.... +..+ .+....+++.+ ...+ +..|...++.+.++++
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~-~l~~-~l~~~~~~~~~-~g~~~~~~~~Dv~d~~~v~~~~~ 121 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHP-KLLG-TIYTAAEEIEA-VGGKALPCIVDVRDEQQISAAVE 121 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCS-SSCC-CHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhh-hhHH-HHHHHHHHHHh-cCCeEEEEEccCCCHHHHHHHHH
Confidence 356899999999999999999999999882333332211 0000 11222222222 1222 3357788999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 122 ~~~~~~g~iDilVn-nAG~ 139 (346)
T 3kvo_A 122 KAIKKFGGIDILVN-NASA 139 (346)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 99887 7998888 5553
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.31 Score=39.64 Aligned_cols=89 Identities=15% Similarity=0.214 Sum_probs=57.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccc-cc---HHHH---HhccCCc---EEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVF-NS---VAEA---KAETKAN---ASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy-~S---v~ea---~~~~~~D---vaVdfVpp~ 127 (182)
...++|.|++|-.|+.+++.+.+.|.+++..+.++.... .+... .+ ++++ .++...+ +..|...++
T Consensus 15 gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 15 GRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSA----SVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA 90 (280)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCT----TCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccc----cccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 356899999999999999999999999882233222211 01001 01 2222 2222222 235778889
Q ss_pred HHHHHHHHHHHc--CCCEEEEeCCCC
Q 030169 128 FAAAAIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 128 av~~a~~eAie~--GIk~VV~iTeG~ 151 (182)
.+.++++++.+. ++..+|+ ..|+
T Consensus 91 ~v~~~~~~~~~~~g~id~lvn-nAg~ 115 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVA-NAGV 115 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEE-CCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEE-CCCC
Confidence 999999888876 7888888 6665
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.11 Score=41.77 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++.+....+ +..|...++.+.++++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (263)
T 3ai3_A 7 GKVAVITGSSSGIGLAIAEGFAKEGAHIV--LVARQVDR--L-----HEAARSLKEKFGVRVLEVAVDVATPEGVDAVVE 77 (263)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEcCCHHH--H-----HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 35699999999999999999999999888 44433211 0 01112221110222 2347778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 78 ~~~~~~g~id~lv~-~Ag~ 95 (263)
T 3ai3_A 78 SVRSSFGGADILVN-NAGT 95 (263)
T ss_dssp HHHHHHSSCSEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88776 7888888 5554
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.18 Score=41.46 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=57.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCC-cEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~-DvaVdfVpp~av~~a~~e 135 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... . -...+++.+. .++ -+..|.+.++.+.+++++
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~~V~--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~ 102 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGAQVA--VAARHSDA--L-----QVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQ 102 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESSGGG--G-----HHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46799999999999999999999999988 44443211 0 0112222211 022 234578889999999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 103 ~~~~~g~iD~lvn-nAg~ 119 (276)
T 3r1i_A 103 MTGELGGIDIAVC-NAGI 119 (276)
T ss_dssp HHHHHSCCSEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8876 7888888 6554
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.14 Score=41.29 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=57.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHH---hccCCc---EEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK---AETKAN---ASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~---~~~~~D---vaVdfVpp~av~~ 131 (182)
..+|+|.|++|-.|+.+++.+.+.|.+|+..+.++..... .....--..++++. +....+ +..|...++.+.+
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 88 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETN-EYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR 88 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTS-CSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccccccccc-ccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 3569999999999999999999999998822333222110 10000111122221 111222 2347788899999
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030169 132 AIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~ 151 (182)
+++++.+. ++..+|+ ..|+
T Consensus 89 ~~~~~~~~~g~id~lv~-nAg~ 109 (287)
T 3pxx_A 89 ELANAVAEFGKLDVVVA-NAGI 109 (287)
T ss_dssp HHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHHcCCCCEEEE-CCCc
Confidence 99988876 7888888 6554
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.14 Score=42.05 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=56.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+++ .++.... ..+++.++... -+..|.+.++.+.++++
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 93 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGAYVV--VADVNED-----------AAVRVANEIGSKAFGVRVDVSSAKDAESMVE 93 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSHH-----------HHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence 35688999999999999999999999888 4433221 12222222111 23457788899999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 94 ~~~~~~g~iD~lv~-nAg~ 111 (277)
T 4dqx_A 94 KTTAKWGRVDVLVN-NAGF 111 (277)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 88876 7888888 6553
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.12 Score=42.25 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCC-CC--eE---------e----cCccccccHHHHHhccCCcE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKK-GG--TE---------H----LGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~-~G--~~---------i----~GvPVy~Sv~ea~~~~~~Dv 119 (182)
.+||+|.|++|-.|+.+++.+.+.| .+|+ + ++... .+ .. + .++-=..+++++.. ++|+
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~ 78 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVI-N-IDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVR--KVDG 78 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEE-E-EECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH--TCSE
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEE-E-EecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhh--CCCE
Confidence 3689999999999999999999876 7888 4 33221 00 00 0 11211223555554 7999
Q ss_pred EEEeeChH------------------HHHHHHHHHHHcCC-CEEEEeCC
Q 030169 120 SVIYVPPP------------------FAAAAIMEAMEAEL-DLVVCITE 149 (182)
Q Consensus 120 aVdfVpp~------------------av~~a~~eAie~GI-k~VV~iTe 149 (182)
+|-..... ....+++.|.+.+. +.+|.+++
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 127 (336)
T 2hun_A 79 VVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVST 127 (336)
T ss_dssp EEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence 98875431 23456677777775 45555453
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.31 Score=38.96 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... ..++.+++...+ +..|...++.+.++++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~----------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (249)
T 2ew8_A 7 DKLAVITGGANGIGRAIAERFAVEGADIA--IADLVPAP----------EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGK 74 (249)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSCCH----------HHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEcCCchh----------HHHHHHHhcCCcEEEEEeecCCHHHHHHHHH
Confidence 35699999999999999999999999988 34332201 011111111222 2346778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 75 ~~~~~~g~id~lv~-nAg~ 92 (249)
T 2ew8_A 75 QVISTFGRCDILVN-NAGI 92 (249)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88765 7888888 5554
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.079 Score=41.45 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=41.3
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec---CccccccHHHHHhcc--CCcEEEEee
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL---GLPVFNSVAEAKAET--KANASVIYV 124 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~---GvPVy~Sv~ea~~~~--~~DvaVdfV 124 (182)
+|+|.|++|..|+.+++.+.+.|.+|+ .++......+.. ++--..+++++.++. ++|++|-..
T Consensus 3 ~vlVtGasg~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~A 70 (255)
T 2dkn_A 3 VIAITGSASGIGAALKELLARAGHTVI--GIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCA 70 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred EEEEeCCCcHHHHHHHHHHHhCCCEEE--EEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECC
Confidence 699999999999999999999999888 444433221111 111123344555433 789988754
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.064 Score=47.53 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=65.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--------------Ce---E---------ec--Cccccc--
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--------------GT---E---------HL--GLPVFN-- 106 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--------------G~---~---------i~--GvPVy~-- 106 (182)
...||.|.|+ |+.|+.+++.+.+.|++|| |--||... |+ + ++ .++|+.
T Consensus 6 ~~~kvgInGF-GRIGrlv~R~~~~~~veiv-ainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~ 83 (346)
T 3h9e_O 6 RELTVGINGF-GRIGRLVLRACMEKGVKVV-AVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCK 83 (346)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeeEEEEECC-ChHHHHHHHHHHhCCCEEE-EEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEecC
Confidence 4578999999 9999999999888889999 75666311 10 0 12 356663
Q ss_pred cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+.+++. .+.++|+++..+......+-+..++++|.|.||+
T Consensus 84 dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVI 124 (346)
T 3h9e_O 84 EPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVI 124 (346)
T ss_dssp SGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEE
T ss_pred ChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEE
Confidence 355543 2347999999888888888899999999998887
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.047 Score=46.43 Aligned_cols=80 Identities=23% Similarity=0.197 Sum_probs=50.9
Q ss_pred CCceEEEEccCCCCchh-hhHHHHHhCCceEEeeccCCCCCe-----EecCccccc--cHHHHH-hccCCcEEEEe--eC
Q 030169 57 KNTRVICQGITGKNGTF-HTEQAIEYGTKMVVGGVTPKKGGT-----EHLGLPVFN--SVAEAK-AETKANASVIY--VP 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~-v~k~~~~~g~~IV~AgVdp~~~G~-----~i~GvPVy~--Sv~ea~-~~~~~DvaVdf--Vp 125 (182)
..+||.|+|+ |..|.. +++.+.+.|.+|. +.|.+.... +..|++++. +.+++. . ++|++|.. +|
T Consensus 3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~~V~--~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~--~~d~vV~Spgi~ 77 (326)
T 3eag_A 3 AMKHIHIIGI-GGTFMGGLAAIAKEAGFEVS--GCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEF--KADVYVIGNVAK 77 (326)
T ss_dssp CCCEEEEESC-CSHHHHHHHHHHHHTTCEEE--EEESSCCTTHHHHHHHTTCEEEESCCGGGGGSC--CCSEEEECTTCC
T ss_pred CCcEEEEEEE-CHHHHHHHHHHHHhCCCEEE--EEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCC--CCCEEEECCCcC
Confidence 3568999999 999995 7888889999888 666654211 123788773 344433 3 57876653 23
Q ss_pred hHHHHHHHHHHHHcCCCE
Q 030169 126 PPFAAAAIMEAMEAELDL 143 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~ 143 (182)
++ ...+.+|.++|++.
T Consensus 78 ~~--~p~~~~a~~~gi~v 93 (326)
T 3eag_A 78 RG--MDVVEAILNLGLPY 93 (326)
T ss_dssp TT--CHHHHHHHHTTCCE
T ss_pred CC--CHHHHHHHHcCCcE
Confidence 32 23345666677664
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.14 Score=41.69 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ .++..... .... ++ -+..|.+.++.+.++++++
T Consensus 28 ~k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~--~~~~-------------~~~~~~~Dv~d~~~v~~~~~~~ 90 (260)
T 3un1_A 28 QKVVVITGASQGIGAGLVRAYRDRNYRVV--ATSRSIKP--SADP-------------DIHTVAGDISKPETADRIVREG 90 (260)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEE--EEESSCCC--CSST-------------TEEEEESCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCChhh--cccC-------------ceEEEEccCCCHHHHHHHHHHH
Confidence 45688999999999999999999999988 44433211 1111 11 1234667888899999888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 91 ~~~~g~iD~lv~-nAg~ 106 (260)
T 3un1_A 91 IERFGRIDSLVN-NAGV 106 (260)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHCCCCCEEEE-CCCC
Confidence 877 7888888 6654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.2 Score=40.21 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++.... ..+++.++. ++. +..|...++.+.++++
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~ 78 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGATVA--IADLDVM-----------AAQAVVAGLENGGFAVEVDVTKRASVDAAMQ 78 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHTCTTCCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHHhcCCeEEEEeCCCHHHHHHHHH
Confidence 46799999999999999999999999888 4443221 112222211 121 3356777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~g~iD~lv~-~Ag~ 96 (263)
T 3ak4_A 79 KAIDALGGFDLLCA-NAGV 96 (263)
T ss_dssp HHHHHHTCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 87765 7888888 5553
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.11 Score=43.25 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=56.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++.+ ...+ +..|.+.++.+.++++
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~ 100 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGARLV--LSDVDQPA--L-----EQAVNGLRG-QGFDAHGVVCDVRHLDEMVRLAD 100 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H-----HHHHHHHHh-cCCceEEEEccCCCHHHHHHHHH
Confidence 35699999999999999999999999988 44443211 0 011222211 1223 3457788888999988
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 101 ~~~~~~g~id~lvn-nAg~ 118 (301)
T 3tjr_A 101 EAFRLLGGVDVVFS-NAGI 118 (301)
T ss_dssp HHHHHHSSCSEEEE-CCCC
T ss_pred HHHHhCCCCCEEEE-CCCc
Confidence 88876 7888888 6664
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.26 Score=40.01 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=57.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccc--cccHHHH---HhccCCcE---EEEeeChHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV--FNSVAEA---KAETKANA---SVIYVPPPFA 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPV--y~Sv~ea---~~~~~~Dv---aVdfVpp~av 129 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... ...+.+. -..+++. .++...++ ..|.+.++.+
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~~V~--~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGADIA--ICDRCENS-DVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECCSCC-TTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEE--EEeCCccc-cccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 45699999999999999999999999988 44433211 0111111 1112222 22222233 3577888999
Q ss_pred HHHHHHHHHc--CCCEEEEeCCCC
Q 030169 130 AAAIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 130 ~~a~~eAie~--GIk~VV~iTeG~ 151 (182)
.++++++.+. ++..+|+ ..|+
T Consensus 87 ~~~~~~~~~~~g~id~lv~-nAg~ 109 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAIT-NAGI 109 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEE-CCCC
T ss_pred HHHHHHHHHhcCCCCEEEE-CCCC
Confidence 9999988876 7888888 5554
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.15 Score=40.18 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=52.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc----EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN----ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D----vaVdfVpp~av~~a~ 133 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++.... .++++.++.+.+ +..|...++.+.+++
T Consensus 11 ~k~vlITGasggiG~~la~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (254)
T 2wsb_A 11 GACAAVTGAGSGIGLEICRAFAASGARLI--LIDREAA-----------ALDRAAQELGAAVAARIVADVTDAEAMTAAA 77 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHHGGGEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhcccceeEEEEecCCHHHHHHHH
Confidence 35699999999999999999999999988 4444321 112221111112 234667777777777
Q ss_pred HHHHH-cCCCEEEEeCCCC
Q 030169 134 MEAME-AELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie-~GIk~VV~iTeG~ 151 (182)
+++.+ .++..+|+ ..|+
T Consensus 78 ~~~~~~~~id~li~-~Ag~ 95 (254)
T 2wsb_A 78 AEAEAVAPVSILVN-SAGI 95 (254)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHhhCCCcEEEE-CCcc
Confidence 76655 36888887 5554
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.14 Score=41.26 Aligned_cols=80 Identities=21% Similarity=0.121 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++.... ..+++.++. ++. +..|...++.+.++++
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGARVV--LADVLDE-----------EGAATARELGDAARYQHLDVTIEEDWQRVVA 71 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHTTGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhCCceeEEEecCCCHHHHHHHHH
Confidence 35699999999999999999999999988 4443221 122222211 111 2346677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 72 ~~~~~~g~iD~lv~-nAg~ 89 (254)
T 1hdc_A 72 YAREEFGSVDGLVN-NAGI 89 (254)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88766 7888888 6554
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.12 Score=43.68 Aligned_cols=87 Identities=8% Similarity=-0.047 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEe---------------cCccccccHHHHHhccCCcEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEH---------------LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i---------------~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
.+||.|+|+ |.||..++..+...|. +|+ .+|....--+- ..+....+. ++.+ ++|+++
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~--l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~--~aDiVi 77 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVV--LFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADIS--GSDVVI 77 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEE--EECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT--TCSEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEE--EEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhC--CCCEEE
Confidence 478999999 9999999999988886 866 66654411000 012223455 5555 799999
Q ss_pred Eee--------------Ch--HHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 122 IYV--------------PP--PFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 122 dfV--------------pp--~av~~a~~eAie~GIk~VV~iTeG 150 (182)
+.+ +. ....+++++.-+..-..++++.+.
T Consensus 78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 998 32 335566666666655555443443
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.081 Score=43.00 Aligned_cols=83 Identities=14% Similarity=0.096 Sum_probs=55.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|-.|+.+++.+.+.|.+++ . ++..... -...+.+.+++...+ +..|.+.++.+.+++++
T Consensus 19 k~~lVTGas~gIG~aia~~l~~~G~~V~-~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 89 (270)
T 3is3_A 19 KVALVTGSGRGIGAAVAVHLGRLGAKVV-V-NYANSTK-------DAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQ 89 (270)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHTTCEEE-E-EESSCHH-------HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE-E-EcCCCHH-------HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 5688999999999999999999999988 3 2222101 011112222222223 33567788899999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 90 ~~~~~g~id~lvn-nAg~ 106 (270)
T 3is3_A 90 AVAHFGHLDIAVS-NSGV 106 (270)
T ss_dssp HHHHHSCCCEEEC-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8876 6888887 6665
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.073 Score=42.21 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+++ .++..... ...+.+..++...+ +..|...++.+.++++
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~--~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVV--GTATSQAS--------AEKFENSMKEKGFKARGLVLNISDIESIQNFFA 74 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEE--EEESSHHH--------HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 45689999999999999999999999988 44443211 01112222222223 3357788888999988
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030169 135 EAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~ 152 (182)
++.+. ++..+|. ..|+.
T Consensus 75 ~~~~~~~~id~li~-~Ag~~ 93 (247)
T 3lyl_A 75 EIKAENLAIDILVN-NAGIT 93 (247)
T ss_dssp HHHHTTCCCSEEEE-CCCCC
T ss_pred HHHHHcCCCCEEEE-CCCCC
Confidence 88876 5788887 66653
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.18 Score=39.75 Aligned_cols=84 Identities=10% Similarity=0.080 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEe--eChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIY--VPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdf--Vpp~av~~a 132 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++.+....++ .++. ..++.+.++
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~ 84 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGASVV--LLGRTEAS--L-----AEVSDQIKSAGQPQPLIIALNLENATAQQYREL 84 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEecCHHH--H-----HHHHHHHHhcCCCCceEEEeccccCCHHHHHHH
Confidence 45689999999999999999999999988 44443211 0 011122222111222 2233 667778888
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
+++..+. ++..+|+ ..|+
T Consensus 85 ~~~~~~~~g~id~lv~-nAg~ 104 (247)
T 3i1j_A 85 AARVEHEFGRLDGLLH-NASI 104 (247)
T ss_dssp HHHHHHHHSCCSEEEE-CCCC
T ss_pred HHHHHHhCCCCCEEEE-CCcc
Confidence 8877766 7888888 5554
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.14 Score=41.69 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++.++...++ ..|...++.+.+++++
T Consensus 22 k~~lVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 92 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLAEAGCSVV--VASRNLEE--A-----SEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEA 92 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4689999999999999999999999988 44443211 0 001122111112222 3467788888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 93 ~~~~~g~iD~lvn-nAg~ 109 (267)
T 1vl8_A 93 VKEKFGKLDTVVN-AAGI 109 (267)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 8765 7888888 6554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.033 Score=44.44 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=54.5
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e-cCcccc-cc------HHHH-HhccCCcEEEEeeC
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H-LGLPVF-NS------VAEA-KAETKANASVIYVP 125 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i-~GvPVy-~S------v~ea-~~~~~~DvaVdfVp 125 (182)
....+|+|+|+ |+.|+.+++.+.+.|. ++ .++....--+ . .|++++ .+ ++++ ++ ++|+++..++
T Consensus 7 ~~~~~viI~G~-G~~G~~la~~L~~~g~-v~--vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~ 80 (234)
T 2aef_A 7 AKSRHVVICGW-SESTLECLRELRGSEV-FV--LAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVR--GARAVIVDLE 80 (234)
T ss_dssp ---CEEEEESC-CHHHHHHHHHSTTSEE-EE--EESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCT--TCSEEEECCS
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHhCCe-EE--EEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcc--hhcEEEEcCC
Confidence 34568999999 9999999999998887 66 6665431100 0 244433 22 2222 22 7899999998
Q ss_pred hHHHH-HHHHHHHHcCCC-EEEEeC
Q 030169 126 PPFAA-AAIMEAMEAELD-LVVCIT 148 (182)
Q Consensus 126 p~av~-~a~~eAie~GIk-~VV~iT 148 (182)
.+... .++..|-+.+.+ .||+-+
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEE
Confidence 76544 455666666776 565544
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.15 Score=41.98 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=55.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++.... ..+++.++. ++ -+..|.+.++.+.++++
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 95 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGCHVL--CADIDGD-----------AADAAATKIGCGAAACRVDVSDEQQIIAMVD 95 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTCEEE--EEESSHH-----------HHHHHHHHHCSSCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHcCCcceEEEecCCCHHHHHHHHH
Confidence 35688899999999999999999999988 4443221 122222211 22 23457788899999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 96 ~~~~~~g~iD~lvn-nAg~ 113 (277)
T 3gvc_A 96 ACVAAFGGVDKLVA-NAGV 113 (277)
T ss_dssp HHHHHHSSCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88876 7888888 6554
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.11 Score=44.53 Aligned_cols=93 Identities=10% Similarity=-0.008 Sum_probs=62.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCC-Ce--Eec--Cc--ccc-----ccHHHHHhccCCcEEEEe
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKG-GT--EHL--GL--PVF-----NSVAEAKAETKANASVIY 123 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~-G~--~i~--Gv--PVy-----~Sv~ea~~~~~~DvaVdf 123 (182)
.+||+|+|++|..|..++..+.+.| .+|+ .+|.... +. ++. .. .+. .+++++.+ ++|++++.
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~--l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~--gaDvVi~~ 83 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLH--LYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALT--GMDLIIVP 83 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEE--EEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHT--TCSEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEE--EEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcC--CCCEEEEc
Confidence 4789999988999999988888777 5677 4554321 10 011 11 121 24667777 89999998
Q ss_pred eC--h--------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030169 124 VP--P--------------PFAAAAIMEAMEAELDLVVCITEGIPQHD 155 (182)
Q Consensus 124 Vp--p--------------~av~~a~~eAie~GIk~VV~iTeG~~~eD 155 (182)
.+ . ..+.++++.+.+.+.+.++.+.+ -|..-
T Consensus 84 ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S-NPv~~ 130 (326)
T 1smk_A 84 AGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS-NPVNS 130 (326)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC-SSHHH
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC-CchHH
Confidence 74 1 45777888888888887666554 56665
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.13 Score=41.69 Aligned_cols=84 Identities=10% Similarity=0.115 Sum_probs=55.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
...++|.|++|-.|+.+++.+.+.|.+++ .++..... . .....+..... ++. +..|.+.++.+.++++
T Consensus 25 ~k~vlITGas~gIG~~~a~~l~~~G~~v~--~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (269)
T 3gk3_A 25 KRVAFVTGGMGGLGAAISRRLHDAGMAVA--VSHSERND-H------VSTWLMHERDAGRDFKAYAVDVADFESCERCAE 95 (269)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEE--EEECSCHH-H------HHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEcCCchH-H------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 45688889999999999999999999888 33322211 0 01111111211 222 3357788899999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 96 ~~~~~~g~id~li~-nAg~ 113 (269)
T 3gk3_A 96 KVLADFGKVDVLIN-NAGI 113 (269)
T ss_dssp HHHHHHSCCSEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 88876 7888888 6554
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.17 Score=40.45 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=55.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... . ..+.+.+++...+ +..|...++.+.++++
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~--~------~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~ 76 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGAAVA--IAARRVEK--L------RALGDELTAAGAKVHVLELDVADRQGVDAAVA 76 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--H------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 35699999999999999999999999888 44433211 0 1111111111222 2346778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 77 ~~~~~~g~id~lv~-nAg~ 94 (247)
T 2jah_A 77 STVEALGGLDILVN-NAGI 94 (247)
T ss_dssp HHHHHHSCCSEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88765 7888888 5553
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.14 Score=41.36 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=55.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ .++.... .++++.++...+ +..|...++.+.++++
T Consensus 5 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 71 (281)
T 3m1a_A 5 AKVWLVTGASSGFGRAIAEAAVAAGDTVI--GTARRTE-----------ALDDLVAAYPDRAEAISLDVTDGERIDVVAA 71 (281)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESSGG-----------GGHHHHHHCTTTEEEEECCTTCHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHhccCCceEEEeeCCCHHHHHHHHH
Confidence 35688999999999999999999999988 4444321 122222221112 2356778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 72 ~~~~~~g~id~lv~-~Ag~ 89 (281)
T 3m1a_A 72 DVLARYGRVDVLVN-NAGR 89 (281)
T ss_dssp HHHHHHSCCSEEEE-CCCC
T ss_pred HHHHhCCCCCEEEE-CCCc
Confidence 88776 7888888 5554
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.08 Score=43.63 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCe----------------E-----------e-cCcc--ccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGT----------------E-----------H-LGLP--VFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~----------------~-----------i-~GvP--Vy~ 106 (182)
..+|+|+|+ |..|..+++.+...|. +|. -+|+..... . + .++. .++
T Consensus 31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~--lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 107 (249)
T 1jw9_B 31 DSRVLIVGL-GGLGCAASQYLASAGVGNLT--LLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 107 (249)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCSEEE--EECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCeEEEEee-CHHHHHHHHHHHHcCCCeEE--EEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence 468999999 9999999999999994 565 566654110 0 0 0111 111
Q ss_pred ------cHHHHHhccCCcEEEEeeChHHHH-HHHHHHHHcCCCEEEE
Q 030169 107 ------SVAEAKAETKANASVIYVPPPFAA-AAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp~av~-~a~~eAie~GIk~VV~ 146 (182)
++++.++ ++|++|+.++...+. .+.+.|.+.|++.|.+
T Consensus 108 ~~~~~~~~~~~~~--~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~ 152 (249)
T 1jw9_B 108 ALLDDAELAALIA--EHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSG 152 (249)
T ss_dssp SCCCHHHHHHHHH--TSSEEEECCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccCCHhHHHHHHh--CCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 2334444 678888877655544 3445556677777765
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.16 Score=41.09 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=55.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++.... .++++.++. ++ -+..|.+.++.+.++++
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVL--LTGRNES-----------NIARIREEFGPRVHALRSDIADLNEIAVLGA 74 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHHGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhCCcceEEEccCCCHHHHHHHHH
Confidence 45699999999999999999999999988 4444321 122222221 11 23456788888988888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 75 ~~~~~~g~id~lv~-nAg~ 92 (255)
T 4eso_A 75 AAGQTLGAIDLLHI-NAGV 92 (255)
T ss_dssp HHHHHHSSEEEEEE-CCCC
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 88776 6777777 6665
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.11 Score=41.92 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=55.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... . ..+.+.+++...+ +..|.+.++.+.++++
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 75 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGARVV--ITGRTKEK--L------EEAKLEIEQFPGQILTVQMDVRNTDDIQKMIE 75 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H------HHHHHHHCCSTTCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 35688999999999999999999999988 44443211 0 1111112211222 3457788889999998
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..+|+ ..|
T Consensus 76 ~~~~~~g~id~lv~-nAg 92 (257)
T 3imf_A 76 QIDEKFGRIDILIN-NAA 92 (257)
T ss_dssp HHHHHHSCCCEEEE-CCC
T ss_pred HHHHHcCCCCEEEE-CCC
Confidence 88876 7888888 555
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.088 Score=44.28 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=61.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc---CCc-EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~---~~D-vaVdfVpp~av~~a~ 133 (182)
..+|+|.|++|-.|+.+++.+.+.|.+|+ .++..... .. ...+++.... .+. +..|.+.++.+.+++
T Consensus 8 ~k~vlVTGas~gIG~~la~~l~~~G~~Vv--~~~r~~~~--~~-----~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~ 78 (319)
T 3ioy_A 8 GRTAFVTGGANGVGIGLVRQLLNQGCKVA--IADIRQDS--ID-----KALATLEAEGSGPEVMGVQLDVASREGFKMAA 78 (319)
T ss_dssp TCEEEEETTTSTHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHHHTCGGGEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEcCCchHHHHHHHHHHHHCCCEEE--EEECCHHH--HH-----HHHHHHHhcCCCCeEEEEECCCCCHHHHHHHH
Confidence 35699999999999999999999999988 44433211 00 0111211110 111 345778888999999
Q ss_pred HHHHHc--CCCEEEEeCCCC---------CHHHHHHHHHHh
Q 030169 134 MEAMEA--ELDLVVCITEGI---------PQHDMVINFTRV 163 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~---------~~eD~~~l~~~a 163 (182)
+++.+. ++..+|+ ..|+ +.++..++.+..
T Consensus 79 ~~~~~~~g~id~lv~-nAg~~~~~~~~~~~~~~~~~~~~~N 118 (319)
T 3ioy_A 79 DEVEARFGPVSILCN-NAGVNLFQPIEESSYDDWDWLLGVN 118 (319)
T ss_dssp HHHHHHTCCEEEEEE-CCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEE-CCCcCCCCCcccCCHHHHHHHHHHH
Confidence 988876 5777777 7775 455555554443
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.13 Score=40.83 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=41.2
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec---CccccccHHHHHhcc--CCcEEEEee
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL---GLPVFNSVAEAKAET--KANASVIYV 124 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~---GvPVy~Sv~ea~~~~--~~DvaVdfV 124 (182)
+|+|.|++|..|+.+++.+.+.|.+|+ .++......+.. ++--..+++++.++. ++|++|-..
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~~V~--~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~A 70 (257)
T 1fjh_A 3 IIVISGCATGIGAATRKVLEAAGHQIV--GIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCA 70 (257)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECC
Confidence 589999999999999999999999988 344333221111 122233455555543 569988754
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.19 Score=41.84 Aligned_cols=84 Identities=20% Similarity=0.137 Sum_probs=56.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ .++..... . -...+++.+....+ +..|.+.++.+.++++
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~~V~--~~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~ 111 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGANVA--VAARSPRE--L-----SSVTAELGELGAGNVIGVRLDVSDPGSCADAAR 111 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESSGGG--G-----HHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--H-----HHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHH
Confidence 45688899999999999999999999988 44443211 0 01122221111112 3457788999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 112 ~~~~~~g~iD~lvn-nAg~ 129 (293)
T 3rih_A 112 TVVDAFGALDVVCA-NAGI 129 (293)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88876 7888888 5554
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.32 Score=39.56 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=57.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccc----cHHHH---HhccCCcE---EEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFN----SVAEA---KAETKANA---SVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~----Sv~ea---~~~~~~Dv---aVdfVpp~ 127 (182)
...++|.|++|-.|+.+++.+.+.|.+++..+.++.... ......... .++++ .+....++ ..|...++
T Consensus 11 ~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 89 (286)
T 3uve_A 11 GKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRA-GVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD 89 (286)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBT-TBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccc-cccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence 356899999999999999999999999882233322111 011111111 12222 22222233 35778889
Q ss_pred HHHHHHHHHHHc--CCCEEEEeCCCC
Q 030169 128 FAAAAIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 128 av~~a~~eAie~--GIk~VV~iTeG~ 151 (182)
.+.++++++.+. ++..+|+ ..|+
T Consensus 90 ~v~~~~~~~~~~~g~id~lv~-nAg~ 114 (286)
T 3uve_A 90 ALKAAVDSGVEQLGRLDIIVA-NAGI 114 (286)
T ss_dssp HHHHHHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEE-CCcc
Confidence 999999998876 7888888 6664
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.13 Score=41.61 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... . -...+++.+....+ +..|.+.++.+.++++
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGANVA--VAGRSTAD--I-----DACVADLDQLGSGKVIGVQTDVSDRAQCDALAG 80 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHH
Confidence 35688999999999999999999999888 44443211 0 01122222111122 3457788889999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 81 ~~~~~~g~id~lvn-nAg~ 98 (262)
T 3pk0_A 81 RAVEEFGGIDVVCA-NAGV 98 (262)
T ss_dssp HHHHHHSCCSEEEE-CCCC
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 88876 7888888 5554
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=93.86 E-value=0.085 Score=42.42 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=56.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.++++|.|++|-.|+.+++.+.+.|.+++ .++..... . ..+.+.......-+..|.+.++.+.++++++.
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~--~~~r~~~~--~------~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGAKVI--GTATSESG--A------QAISDYLGDNGKGMALNVTNPESIEAVLKAIT 78 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEE--EEESSHHH--H------HHHHHHHGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHhcccceEEEEeCCCHHHHHHHHHHHH
Confidence 45688899999999999999999999988 44433211 0 01111111111124567788999999999888
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|+ ..|+
T Consensus 79 ~~~g~iD~lv~-nAg~ 93 (248)
T 3op4_A 79 DEFGGVDILVN-NAGI 93 (248)
T ss_dssp HHHCCCSEEEE-CCCC
T ss_pred HHcCCCCEEEE-CCCC
Confidence 76 7888888 6564
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.14 Score=41.44 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=55.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeCh-HHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPP-PFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp-~av~~a 132 (182)
+..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .-...+++.+....+ +.+|...+ +.+..+
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~--~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~ 81 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVV--LTCRDVTK-------GHEAVEKLKNSNHENVVFHQLDVTDPIATMSSL 81 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-------HHHHHHHHHhcCCCceEEEEccCCCcHHHHHHH
Confidence 345688999999999999999999999888 44433211 111123332221122 23466676 777788
Q ss_pred HHHHHHc--CCCEEEEeCCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~~ 152 (182)
+++..+. ++..+|+ ..|+.
T Consensus 82 ~~~~~~~~g~iD~lv~-nAg~~ 102 (311)
T 3o26_A 82 ADFIKTHFGKLDILVN-NAGVA 102 (311)
T ss_dssp HHHHHHHHSSCCEEEE-CCCCC
T ss_pred HHHHHHhCCCCCEEEE-CCccc
Confidence 7777765 7888988 77764
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.16 Score=41.09 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHH--hcc--CCc-EEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK--AET--KAN-ASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~--~~~--~~D-vaVdfVpp~av~~a 132 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++. ... ++. +..|...++.+.++
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 76 (278)
T 1spx_A 6 EKVAIITGSSNGIGRATAVLFAREGAKVT--ITGRHAER--LE-----ETRQQILAAGVSEQNVNSVVADVTTDAGQDEI 76 (278)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHhcccCCCceeEEecccCCHHHHHHH
Confidence 35688999999999999999999999988 44433210 00 0011110 100 111 23567778888888
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
++++.+. ++..+|+ ..|+
T Consensus 77 ~~~~~~~~g~id~lv~-~Ag~ 96 (278)
T 1spx_A 77 LSTTLGKFGKLDILVN-NAGA 96 (278)
T ss_dssp HHHHHHHHSCCCEEEE-CCC-
T ss_pred HHHHHHHcCCCCEEEE-CCCC
Confidence 8887766 7888888 6665
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.17 Score=39.67 Aligned_cols=80 Identities=19% Similarity=0.091 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~~e 135 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++.... ..+++.++. ++ -+..|...++.+.+++++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGYRVG--LMARDEK-----------RLQALAAELEGALPLPGDVREEGDWARAVAA 71 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHSTTCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEECCHH-----------HHHHHHHHhhhceEEEecCCCHHHHHHHHHH
Confidence 35699999999999999999999999888 4443221 122222211 22 133567778888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|. ..|+
T Consensus 72 ~~~~~~~id~li~-~Ag~ 88 (234)
T 2ehd_A 72 MEEAFGELSALVN-NAGV 88 (234)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7665 7888887 5554
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.094 Score=42.91 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=55.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+...++|.|++|-.|+.+++.+.+.|.+++ ....... . -...+.+..++...+ +..|.+.++.+.+++
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv-~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 96 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGFTVV-INYAGKA-A-------AAEEVAGKIEAAGGKALTAQADVSDPAAVRRLF 96 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTCEEE-EEESSCS-H-------HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEcCCCH-H-------HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 456799999999999999999999999988 3222221 1 011122222222222 235778889999999
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 97 ~~~~~~~g~iD~lvn-nAG~ 115 (267)
T 3u5t_A 97 ATAEEAFGGVDVLVN-NAGI 115 (267)
T ss_dssp HHHHHHHSCEEEEEE-CCCC
T ss_pred HHHHHHcCCCCEEEE-CCCC
Confidence 988876 6777887 6554
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.062 Score=47.65 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=58.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCC-----------------------------eE--ecCc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGG-----------------------------TE--HLGL 102 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G-----------------------------~~--i~Gv 102 (182)
+.++|+|.|++|-.|+.+++.+.+. |.+|+ + ++..... -+ ..++
T Consensus 72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~-~-l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLI-C-LVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEE-E-EECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEE-E-EECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 4578999999999999999999988 78888 4 4432211 00 0122
Q ss_pred c------ccccHHHHHhccCCcEEEEeeC--------------hHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 103 P------VFNSVAEAKAETKANASVIYVP--------------PPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 103 P------Vy~Sv~ea~~~~~~DvaVdfVp--------------p~av~~a~~eAie~GIk~VV~iTe 149 (182)
- -...++++.+ ++|+++-..- -..+..+++.|.+.|++.+|.+++
T Consensus 150 ~~~~~gld~~~~~~~~~--~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS 214 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAE--TVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST 214 (478)
T ss_dssp TSGGGGCCHHHHHHHHH--HCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred CCcccCCCHHHHHHHHc--CCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 1 1123455555 6898886532 235667888888889866665554
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.12 Score=41.38 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|-.|+.+++.+.+.|.+++ .++..... -...+.+..++...+ +..|...++.+.+++++
T Consensus 8 k~vlVTGas~gIG~~~a~~l~~~G~~v~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 78 (264)
T 3i4f_A 8 RHALITAGTKGLGKQVTEKLLAKGYSVT--VTYHSDTT-------AMETMKETYKDVEERLQFVQADVTKKEDLHKIVEE 78 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESSCHH-------HHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCchhHHHHHHHHHHCCCEEE--EEcCCChH-------HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 5688899999999999999999999988 33222111 011122222211112 33577888999999988
Q ss_pred HHHc--CCCEEEEeCCC
Q 030169 136 AMEA--ELDLVVCITEG 150 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG 150 (182)
+.+. ++..+|+ ..|
T Consensus 79 ~~~~~g~id~lv~-~Ag 94 (264)
T 3i4f_A 79 AMSHFGKIDFLIN-NAG 94 (264)
T ss_dssp HHHHHSCCCEEEC-CCC
T ss_pred HHHHhCCCCEEEE-CCc
Confidence 8876 7888887 666
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.19 Score=40.19 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++..... ...+. .+..|...++.+.++++++.
T Consensus 15 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~~~~~--------------~~~~D~~~~~~~~~~~~~~~ 76 (247)
T 1uzm_A 15 SRSVLVTGGNRGIGLAIAQRLAADGHKVA--VTHRGSGA--PKGLF--------------GVEVDVTDSDAVDRAFTAVE 76 (247)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESSSCC--CTTSE--------------EEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCChHH--HHHhc--------------CeeccCCCHHHHHHHHHHHH
Confidence 35689999999999999999999999988 33332211 11111 14456677888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|+ ..|+
T Consensus 77 ~~~g~id~lv~-~Ag~ 91 (247)
T 1uzm_A 77 EHQGPVEVLVS-NAGL 91 (247)
T ss_dssp HHHSSCSEEEE-ECSC
T ss_pred HHcCCCCEEEE-CCCC
Confidence 65 6888887 4444
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.22 Score=40.11 Aligned_cols=83 Identities=17% Similarity=0.054 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+|+ .++..... . -...+++.+ ...+ +..|.+.++.+.++++
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~ 76 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGFTVF--AGRRNGEK--L-----APLVAEIEA-AGGRIVARSLDARNEDEVTAFLN 76 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEE--EEESSGGG--G-----HHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHh-cCCeEEEEECcCCCHHHHHHHHH
Confidence 35689999999999999999999999988 44443311 0 011222221 1222 2346778888888888
Q ss_pred HHHHc-CCCEEEEeCCCC
Q 030169 135 EAMEA-ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 77 ~~~~~g~id~lv~-nAg~ 93 (252)
T 3h7a_A 77 AADAHAPLEVTIF-NVGA 93 (252)
T ss_dssp HHHHHSCEEEEEE-CCCC
T ss_pred HHHhhCCceEEEE-CCCc
Confidence 88876 4666676 6553
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.16 Score=41.09 Aligned_cols=80 Identities=23% Similarity=0.183 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++.... ..+++.++. .+. +..|...++.+.++++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 73 (260)
T 1nff_A 7 GKVALVSGGARGMGASHVRAMVAEGAKVV--FGDILDE-----------EGKAMAAELADAARYVHLDVTQPAQWKAAVD 73 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHTGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhhcCceEEEecCCCHHHHHHHHH
Confidence 35699999999999999999999999988 3333221 111211110 111 3356778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 74 ~~~~~~g~iD~lv~-~Ag~ 91 (260)
T 1nff_A 74 TAVTAFGGLHVLVN-NAGI 91 (260)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87766 7888888 5553
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.15 Score=41.91 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... ...+.+.+++...++ ..|.+.++.+.++++
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~--~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 73 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKIL--LGARRQAR--------IEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQ 73 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEE--EEESSHHH--------HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEE--EEECCHHH--------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35688999999999999999999999988 44433211 011111122112232 357788899999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 74 ~~~~~~g~iD~lVn-nAG~ 91 (264)
T 3tfo_A 74 AAVDTWGRIDVLVN-NAGV 91 (264)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88876 7888888 6554
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.19 Score=41.08 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=56.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+.+.++|.|++|-.|+.+++.+.+.|.+|+ .++..... . -...+++ ++...+ +..|.+.++.+.+++
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~--~~~r~~~~--~-----~~~~~~l-~~~~~~~~~~~~Dv~d~~~v~~~~ 92 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGIAVY--GCARDAKN--V-----SAAVDGL-RAAGHDVDGSSCDVTSTDEVHAAV 92 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHH-HTTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHH-HhcCCcEEEEECCCCCHHHHHHHH
Confidence 345699999999999999999999999988 44443211 0 0112222 211223 234778888999999
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 93 ~~~~~~~g~id~lv~-nAg~ 111 (279)
T 3sju_A 93 AAAVERFGPIGILVN-SAGR 111 (279)
T ss_dssp HHHHHHHCSCCEEEE-CCCC
T ss_pred HHHHHHcCCCcEEEE-CCCC
Confidence 988876 6888888 6664
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.075 Score=45.07 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=56.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
+.|+|.|++|-.|+.+++.+.+.|.+++ +.+ ....+... .-...+.+..+....+ +..|.+.++.+.+++++
T Consensus 6 k~vlVTGas~GIG~aia~~L~~~G~~V~-~~~-r~~~~r~~---~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 6 KIILITGASSGFGRLTAEALAGAGHRVY-ASM-RDIVGRNA---SNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEE-EEE-SCTTTTTH---HHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE-Eec-CcccccCH---HHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 4688999999999999999999999998 432 22111100 0111222222222222 34567788899999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 81 ~~~~~g~iD~lVn-nAG~ 97 (324)
T 3u9l_A 81 IIGEDGRIDVLIH-NAGH 97 (324)
T ss_dssp HHHHHSCCSEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 8876 7898988 6664
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.04 Score=44.32 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=53.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCcccc-ccHHHHHhccCCcEEEEeeChH-----HH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGLPVF-NSVAEAKAETKANASVIYVPPP-----FA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~GvPVy-~Sv~ea~~~~~~DvaVdfVpp~-----av 129 (182)
+||+|.|+ |..|+.+++.+.+.|.+|+ +++........ .++.++ -++.++. -.++|+++....+. ..
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~~~~~~~ 81 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQGWRII--GTSRNPDQMEAIRASGAEPLLWPGEEPS-LDGVTHLLISTAPDSGGDPVL 81 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGTCEEE--EEESCGGGHHHHHHTTEEEEESSSSCCC-CTTCCEEEECCCCBTTBCHHH
T ss_pred CcEEEECC-cHHHHHHHHHHHHCCCEEE--EEEcChhhhhhHhhCCCeEEEecccccc-cCCCCEEEECCCccccccHHH
Confidence 68999998 9999999999999999998 44443311000 122221 2222211 22789999887542 34
Q ss_pred HHHHHHHHH--cCCCEEEEeC
Q 030169 130 AAAIMEAME--AELDLVVCIT 148 (182)
Q Consensus 130 ~~a~~eAie--~GIk~VV~iT 148 (182)
..+++.+.+ .+++.+|.++
T Consensus 82 ~~l~~a~~~~~~~~~~~v~~S 102 (286)
T 3ius_A 82 AALGDQIAARAAQFRWVGYLS 102 (286)
T ss_dssp HHHHHHHHHTGGGCSEEEEEE
T ss_pred HHHHHHHHhhcCCceEEEEee
Confidence 555566666 6888776544
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.034 Score=47.22 Aligned_cols=88 Identities=20% Similarity=0.156 Sum_probs=57.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE----ecC--ccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE----HLG--LPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~----i~G--vPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.++|.|+|+ |.||+.+++.+.+. |.+-| ...|+....-+ ..+ +.++++++|+.+ ++|+++..+|.. .
T Consensus 135 ~~~igiIG~-G~~g~~~a~~l~~~~g~~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~--~aDiVi~atp~~--~ 208 (312)
T 2i99_A 135 SEVLCILGA-GVQAYSHYEIFTEQFSFKEV-RIWNRTKENAEKFADTVQGEVRVCSSVQEAVA--GADVIITVTLAT--E 208 (312)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCCCSEE-EEECSSHHHHHHHHHHSSSCCEECSSHHHHHT--TCSEEEECCCCS--S
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCCcEE-EEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHh--cCCEEEEEeCCC--C
Confidence 468999998 99999999988765 76333 35665431100 113 678899999988 799999999852 3
Q ss_pred HHHH-HHHHcCCCEEEEeCCCCC
Q 030169 131 AAIM-EAMEAELDLVVCITEGIP 152 (182)
Q Consensus 131 ~a~~-eAie~GIk~VV~iTeG~~ 152 (182)
.++. +.++.|. .|+.+++.-|
T Consensus 209 ~v~~~~~l~~g~-~vi~~g~~~p 230 (312)
T 2i99_A 209 PILFGEWVKPGA-HINAVGASRP 230 (312)
T ss_dssp CCBCGGGSCTTC-EEEECCCCST
T ss_pred cccCHHHcCCCc-EEEeCCCCCC
Confidence 3333 3455564 4555444433
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.18 Score=45.46 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=69.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee--cCcccccc-HHHHHhc-------------cCCcEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH--LGLPVFNS-VAEAKAE-------------TKANAS 120 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i--~GvPVy~S-v~ea~~~-------------~~~Dva 120 (182)
..|.-|+|. |.||..++..+.+.|.+++ ++|....-- ++ ...|+|.. ++|++++ .++|++
T Consensus 11 ~~~~~ViGl-GyvGlp~A~~La~~G~~V~--~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv 87 (431)
T 3ojo_A 11 GSKLTVVGL-GYIGLPTSIMFAKHGVDVL--GVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF 87 (431)
T ss_dssp -CEEEEECC-STTHHHHHHHHHHTTCEEE--EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred CCccEEEee-CHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence 467889998 9999999999999999999 666554110 11 24777765 5544211 158999
Q ss_pred EEeeChHH------------HHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 121 VIYVPPPF------------AAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 121 VdfVpp~a------------v~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
++.||-.. +..+++...+. .-..+|+..+.+++.-.+++.+.
T Consensus 88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~ 142 (431)
T 3ojo_A 88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKP 142 (431)
T ss_dssp EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHH
T ss_pred EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHH
Confidence 99998765 56666655543 33446666889998888887653
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.14 Score=41.89 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc----cCCc---EEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE----TKAN---ASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~----~~~D---vaVdfVpp~av~ 130 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++.+. ...+ +..|...++.+.
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~ 88 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGSNVV--IASRKLER--L-----KSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHhhccccCCccEEEEecCCCCHHHHH
Confidence 35699999999999999999999999888 44433211 0 0111222110 1122 224667788888
Q ss_pred HHHHHHHHc--CCCEEEEeCCC
Q 030169 131 AAIMEAMEA--ELDLVVCITEG 150 (182)
Q Consensus 131 ~a~~eAie~--GIk~VV~iTeG 150 (182)
++++++.+. ++..+|+ ..|
T Consensus 89 ~~~~~~~~~~g~id~li~-~Ag 109 (303)
T 1yxm_A 89 NLVKSTLDTFGKINFLVN-NGG 109 (303)
T ss_dssp HHHHHHHHHHSCCCEEEE-CCC
T ss_pred HHHHHHHHHcCCCCEEEE-CCC
Confidence 888887765 6888888 555
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.17 Score=40.46 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=55.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
++++|.|++|-.|+.+++.+.+.|.+++ .++..... -...+.+.+++...+ +..|...++.+.+++++
T Consensus 5 k~~lVTGas~gIG~~ia~~l~~~G~~V~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 75 (246)
T 3osu_A 5 KSALVTGASRGIGRSIALQLAEEGYNVA--VNYAGSKE-------KAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKE 75 (246)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESSCHH-------HHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCCHH-------HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 5688999999999999999999999988 32222101 011112222222233 33567788888898888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 76 ~~~~~g~id~lv~-nAg~ 92 (246)
T 3osu_A 76 VVSQFGSLDVLVN-NAGI 92 (246)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8876 7888888 6554
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.44 Score=40.18 Aligned_cols=92 Identities=21% Similarity=0.210 Sum_probs=57.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.+.++|.|++|..|+.+++.+.+.|.+|++...++...+.--..-..-...+++.+ ...++..|+...+.+.++++++.
T Consensus 9 gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~-~~~~~~~D~~~~~~~~~~~~~~~ 87 (319)
T 1gz6_A 9 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR-RGGKAVANYDSVEAGEKLVKTAL 87 (319)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH-TTCEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHh-hCCeEEEeCCCHHHHHHHHHHHH
Confidence 35688889999999999999999999988222221111100000000011222222 23456789999988888888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|+ ..|+
T Consensus 88 ~~~g~iD~lVn-nAG~ 102 (319)
T 1gz6_A 88 DTFGRIDVVVN-NAGI 102 (319)
T ss_dssp HHTSCCCEEEE-CCCC
T ss_pred HHcCCCCEEEE-CCCC
Confidence 76 6888888 5553
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.14 Score=41.66 Aligned_cols=80 Identities=13% Similarity=0.041 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ .++..... ..+..++.++ =+..|...++.+.++++++
T Consensus 27 ~k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 27 SAPILITGASQRVGLHCALRLLEHGHRVI--ISYRTEHA-----------SVTELRQAGAVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp CCCEEESSTTSHHHHHHHHHHHHTTCCEE--EEESSCCH-----------HHHHHHHHTCEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCChHH-----------HHHHHHhcCCeEEECCCCCHHHHHHHHHHH
Confidence 35689999999999999999999999988 44443311 1122221122 2345778889999999988
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 94 ~~~~g~iD~lv~-nAg~ 109 (260)
T 3gem_A 94 KTQTSSLRAVVH-NASE 109 (260)
T ss_dssp HHHCSCCSEEEE-CCCC
T ss_pred HHhcCCCCEEEE-CCCc
Confidence 876 6888887 6554
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.16 Score=40.97 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... . ..+.+.+++...++ ..|...++.+.++++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGTAIA--LLDMNREA--L------EKAEASVREKGVEARSYVCDVTSEEAVIGTVD 76 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H------HHHHHHHHTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 35699999999999999999999999888 44432211 0 11111122112232 346778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 77 ~~~~~~g~id~lv~-nAg~ 94 (262)
T 1zem_A 77 SVVRDFGKIDFLFN-NAGY 94 (262)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 88776 7888888 5554
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.3 Score=40.09 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCcE---EEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~Dv---aVdfVpp~av~~a~~ 134 (182)
++++|.|++|-.|+.+++.+.+.|.+|+ .++..... -...+.+.+++. ..++ ..|...++.+.++++
T Consensus 26 k~~lVTGas~GIG~~ia~~la~~G~~V~--~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 96 (281)
T 3v2h_A 26 KTAVITGSTSGIGLAIARTLAKAGANIV--LNGFGAPD-------EIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMA 96 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEE--EECCCCHH-------HHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCChH-------HHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999999999999888 44432211 011111212211 1222 246778888999988
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|+ ..|+
T Consensus 97 ~~~~~~g~iD~lv~-nAg~ 114 (281)
T 3v2h_A 97 MVADRFGGADILVN-NAGV 114 (281)
T ss_dssp HHHHHTSSCSEEEE-CCCC
T ss_pred HHHHHCCCCCEEEE-CCCC
Confidence 88876 7888888 6665
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.14 Score=41.11 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=55.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc--c-CCc-EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE--T-KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~--~-~~D-vaVdfVpp~av~~a~ 133 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+. . ++. +..|...++.+.+++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (260)
T 2z1n_A 7 GKLAVVTAGSSGLGFASALELARNGARLL--LFSRNREK--LE-----AAASRIASLVSGAQVDIVAGDIREPGDIDRLF 77 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHHHSTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHhcCCCCeEEEEEccCCCHHHHHHHH
Confidence 35699999999999999999999999988 44433211 00 111221111 0 121 235777888888888
Q ss_pred HHHHHc-CCCEEEEeCCCC
Q 030169 134 MEAMEA-ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~-GIk~VV~iTeG~ 151 (182)
+++.+. |+..+|+ ..|+
T Consensus 78 ~~~~~~~gid~lv~-~Ag~ 95 (260)
T 2z1n_A 78 EKARDLGGADILVY-STGG 95 (260)
T ss_dssp HHHHHTTCCSEEEE-CCCC
T ss_pred HHHHHhcCCCEEEE-CCCC
Confidence 888876 7888888 6564
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.17 Score=41.29 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... . ...+.+.+++...++ ..|...++.+.++++
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 99 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRGCKVI--VNYANSTE--S-----AEEVVAAIKKNGSDAACVKANVGVVEDIVRMFE 99 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESSCHH--H-----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCchH--H-----HHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHH
Confidence 35689999999999999999999999988 34333211 0 011111122112232 346677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 100 ~~~~~~g~iD~lv~-~Ag~ 117 (283)
T 1g0o_A 100 EAVKIFGKLDIVCS-NSGV 117 (283)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 87765 6888888 6554
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.23 Score=39.58 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+++ .++..... .. -...+++ ++...+ +..|...++.+.++++
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~--~~~r~~~~-~~-----~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T 2uvd_A 4 GKVALVTGASRGIGRAIAIDLAKQGANVV--VNYAGNEQ-KA-----NEVVDEI-KKLGSDAIAVRADVANAEDVTNMVK 74 (246)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESSCHH-HH-----HHHHHHH-HHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCCHH-HH-----HHHHHHH-HhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35689999999999999999999999988 33331100 00 0011221 111222 2346778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 75 ~~~~~~g~id~lv~-nAg~ 92 (246)
T 2uvd_A 75 QTVDVFGQVDILVN-NAGV 92 (246)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87765 7888888 6664
|
| >1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.28 Score=43.88 Aligned_cols=96 Identities=25% Similarity=0.249 Sum_probs=56.2
Q ss_pred CCCeeeecCCceEEEEccCCCCchhhhHHHHHh-----------------------CCceEEee--ccCCCCCeEec---
Q 030169 49 SHPAVFVDKNTRVICQGITGKNGTFHTEQAIEY-----------------------GTKMVVGG--VTPKKGGTEHL--- 100 (182)
Q Consensus 49 ~~~~~li~~~trViVvG~tGkmG~~v~k~~~~~-----------------------g~~IV~Ag--Vdp~~~G~~i~--- 100 (182)
+++..--...+||+|+|. |+.|+.+++.+..| +++|| |+ ||+.+.|+.+.
T Consensus 6 ~~~~~~~~~~~rVaIVGv-GN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iV-aafDId~~KVG~~l~~A~ 83 (367)
T 1gr0_A 6 SLPAPEASTEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFV-AAFDVDAKKVGFDLSDAI 83 (367)
T ss_dssp --------CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEE-EEEECBTTTTTSBHHHHT
T ss_pred cCCCchhccCCCEEEECc-ChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEE-EEEcCChHHHHHHhhCCE
Confidence 334444556789999999 99999999955522 25567 75 88888886521
Q ss_pred -----------Ccc----------------------------ccccHHHHHhccCCcEEEEeeChHHHH---HHHHHHHH
Q 030169 101 -----------GLP----------------------------VFNSVAEAKAETKANASVIYVPPPFAA---AAIMEAME 138 (182)
Q Consensus 101 -----------GvP----------------------------Vy~Sv~ea~~~~~~DvaVdfVpp~av~---~a~~eAie 138 (182)
.+| .-.++.+..+++++|++|.+.|..... --+..|++
T Consensus 84 ~~~~n~~~~~~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~~~~~dVvV~~lp~gs~~aS~~YA~Aal~ 163 (367)
T 1gr0_A 84 FASENNTIKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKEAKVDVLVSYLPVGSEEADKFYAQCAID 163 (367)
T ss_dssp TSTTCCCCCCSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHHTTCSEEEECCCTTCHHHHHHHHHHHHH
T ss_pred ecCCCchhhhhcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHHHhCCcEEEEeeeCCCcCHHHHHHHHHHH
Confidence 222 111455666666778777777643222 22345566
Q ss_pred cCCCEEEE
Q 030169 139 AELDLVVC 146 (182)
Q Consensus 139 ~GIk~VV~ 146 (182)
.|++-|=+
T Consensus 164 ag~~fvN~ 171 (367)
T 1gr0_A 164 AGVAFVNA 171 (367)
T ss_dssp HTCEEEEC
T ss_pred cCCceEec
Confidence 67766554
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.16 Score=39.82 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+....+ +..|...++.+.++++
T Consensus 7 ~~~vlVtGasggiG~~la~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (248)
T 2pnf_A 7 GKVSLVTGSTRGIGRAIAEKLASAGSTVI--ITGTSGER--AK-----AVAEEIANKYGVKAHGVEMNLLSEESINKAFE 77 (248)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESSHHH--HH-----HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCChHH--HH-----HHHHHHHhhcCCceEEEEccCCCHHHHHHHHH
Confidence 35689999999999999999999999888 44432210 00 0011111101222 2346677888888887
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..||. ..|+
T Consensus 78 ~~~~~~~~~d~vi~-~Ag~ 95 (248)
T 2pnf_A 78 EIYNLVDGIDILVN-NAGI 95 (248)
T ss_dssp HHHHHSSCCSEEEE-CCCC
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 77765 7888888 5554
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.21 Score=40.77 Aligned_cols=86 Identities=17% Similarity=0.175 Sum_probs=56.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+...++|.|++|-.|+.+++.+.+.|.+++ .++....+ -...+.+.+++...+ +..|.+.++.+.+++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~ 97 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGAKVA--VNYASSAG-------AADEVVAAIAAAGGEAFAVKADVSQESEVEALF 97 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESSCHH-------HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCChH-------HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 345688889999999999999999999888 33221111 011122222222222 335778888899998
Q ss_pred HHHHHc--CCCEEEEeCCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~~ 152 (182)
+++.+. ++..+|+ ..|+.
T Consensus 98 ~~~~~~~g~id~lv~-nAg~~ 117 (269)
T 4dmm_A 98 AAVIERWGRLDVLVN-NAGIT 117 (269)
T ss_dssp HHHHHHHSCCCEEEE-CCCCC
T ss_pred HHHHHHcCCCCEEEE-CCCCC
Confidence 888876 7888888 65553
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.11 Score=42.46 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=56.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+++ .++... ..++++.++...+ +..|.+.++.+.++++
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~--~~~r~~-----------~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 93 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVG--LHGTRE-----------DKLKEIAADLGKDVFVFSANLSDRKSIKQLAE 93 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEE--EEESCH-----------HHHHHHHHHHCSSEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCH-----------HHHHHHHHHhCCceEEEEeecCCHHHHHHHHH
Confidence 45689999999999999999999998887 333322 1122332222223 2356788888999998
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030169 135 EAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~ 152 (182)
++.+. ++..+|+ ..|+.
T Consensus 94 ~~~~~~g~iD~lvn-nAg~~ 112 (266)
T 3grp_A 94 VAEREMEGIDILVN-NAGIT 112 (266)
T ss_dssp HHHHHHTSCCEEEE-CCCCC
T ss_pred HHHHHcCCCCEEEE-CCCCC
Confidence 88876 7888888 66654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.088 Score=45.40 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=61.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-C-CceEEeeccCCCCCeEecC--ccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-G-TKMVVGGVTPKKGGTEHLG--LPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-g-~~IV~AgVdp~~~G~~i~G--vPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
...+|++.|+ |..|..+.+.+.-. + ..-+ ...||.+-|+.+.| +||++. ++ +.+.++|.++++ ++....++
T Consensus 318 ~gk~v~~yGa-~~~g~~l~~~~~~~~~~i~~~-~D~~~~k~g~~~~g~~ipi~~p-~~-~~~~~~d~vl~~-~~~~~~ei 392 (416)
T 4e2x_A 318 EGRSVVGYGA-TAKSATVTNFCGIGPDLVHSV-YDTTPDKQNRLTPGAHIPVRPA-SA-FSDPYPDYALLF-AWNHAEEI 392 (416)
T ss_dssp TTCCEEEECC-CSHHHHHHHHHTCCTTTSCCE-EESCGGGTTEECTTTCCEEEEG-GG-CCSSCCSEEEES-CGGGHHHH
T ss_pred cCCeEEEEcc-ccHHHHHHHhcCCCcceeeEE-EeCCccccCccCCCCCCcCCCH-HH-HhhcCCCEEEEe-cchhHHHH
Confidence 4567999999 77888887766522 2 3333 47899999988888 999984 33 333589998887 66667777
Q ss_pred HH---HHHHcCCCEEEE
Q 030169 133 IM---EAMEAELDLVVC 146 (182)
Q Consensus 133 ~~---eAie~GIk~VV~ 146 (182)
.+ +..+.|-+-|+.
T Consensus 393 ~~~~~~~~~~g~~~~~~ 409 (416)
T 4e2x_A 393 MAKEQEFHQAGGRWILY 409 (416)
T ss_dssp HHHCHHHHHTTCEEEEC
T ss_pred HHHHHHHHhcCCEEEEE
Confidence 65 444778888776
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.16 Score=40.98 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+++ .++..... ...+.+.+++...+ +..|.+.++.+.++++
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 81 (256)
T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGASVV--VTDLKSEG--------AEAVAAAIRQAGGKAIGLECNVTDEQHREAVIK 81 (256)
T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTCEEE--EEESSHHH--------HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--------HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 35688999999999999999999999988 44433211 01111112211222 3357788889999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 82 ~~~~~~g~id~lv~-nAg~ 99 (256)
T 3gaf_A 82 AALDQFGKITVLVN-NAGG 99 (256)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88876 7888888 6554
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.17 Score=39.66 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=54.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc----EEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN----ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D----vaVdfVpp~av~~a~~ 134 (182)
++|+|.|++|..|+.+++.+.+.|.+++ +..+..... . ..+.+.+++...+ +..|...++.+.++++
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~~v~-~~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGFALA-IHYGQNREK--A------EEVAEEARRRGSPLVAVLGANLLEAEAATALVH 72 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEE-EEESSCHHH--H------HHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEE-EEcCCCHHH--H------HHHHHHHHhcCCceEEEEeccCCCHHHHHHHHH
Confidence 3689999999999999999999999988 432443211 0 1111111111222 3447788888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 73 ~~~~~~~~~d~li~-~Ag~ 90 (245)
T 2ph3_A 73 QAAEVLGGLDTLVN-NAGI 90 (245)
T ss_dssp HHHHHHTCCCEEEE-CCCC
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 87765 7888888 5554
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.4 Score=40.09 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec--CccccccHHHHHhccCCcE---EEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL--GLPVFNSVAEAKAETKANA---SVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~--GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a 132 (182)
...++|.|++|-.|+.+++.+.+.|.+++..+.+......+.. ...-.....+..++...++ ..|...++.+.++
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 125 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQAV 125 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 3568889999999999999999999998822333222110000 0000011111122222333 3477888999999
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
++++.+. ++..+|+ ..|+
T Consensus 126 ~~~~~~~~g~iD~lVn-nAg~ 145 (317)
T 3oec_A 126 VDEALAEFGHIDILVS-NVGI 145 (317)
T ss_dssp HHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHcCCCCEEEE-CCCC
Confidence 9988876 7888888 5554
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.089 Score=44.09 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=29.6
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.+.+..+|+|.|++|..|..+++.+...|.+++
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi 174 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVI 174 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEE
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEE
Confidence 356778899999999999999999999999888
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.22 Score=39.08 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=52.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+++ ...+..... . ..+.+.+++...++ ..|...++.+.++++
T Consensus 5 ~~~vlItGasggiG~~~a~~l~~~G~~V~-~~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T 2hq1_A 5 GKTAIVTGSSRGLGKAIAWKLGNMGANIV-LNGSPASTS--L------DATAEEFKAAGINVVVAKGDVKNPEDVENMVK 75 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEECTTCSH--H------HHHHHHHHHTTCCEEEEESCTTSHHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEE-EEcCcCHHH--H------HHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 45799999999999999999999999988 321332211 1 11111111112232 346677788888887
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030169 135 EAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~ 152 (182)
+..+. ++..+|+ ..|+.
T Consensus 76 ~~~~~~~~~d~vi~-~Ag~~ 94 (247)
T 2hq1_A 76 TAMDAFGRIDILVN-NAGIT 94 (247)
T ss_dssp HHHHHHSCCCEEEE-CC---
T ss_pred HHHHhcCCCCEEEE-CCCCC
Confidence 77665 7888888 55653
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.091 Score=42.58 Aligned_cols=84 Identities=10% Similarity=-0.014 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-C--Cc-EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-K--AN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~--~D-vaVdfVpp~av~~a~ 133 (182)
...++|.|++|-.|+.+++.+.+.|.+|+ .++..... . -...+++.+.. . +. +..|.+.++.+.+++
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 78 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGAAVA--FCARDGER--L-----RAAESALRQRFPGARLFASVCDVLDALQVRAFA 78 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHH
Confidence 45689999999999999999999999988 44433211 0 01122222211 1 11 235778889999999
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~~g~id~lvn-nAg~ 97 (265)
T 3lf2_A 79 EACERTLGCASILVN-NAGQ 97 (265)
T ss_dssp HHHHHHHCSCSEEEE-CCCC
T ss_pred HHHHHHcCCCCEEEE-CCCC
Confidence 988876 6888888 6554
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.039 Score=52.44 Aligned_cols=93 Identities=18% Similarity=0.107 Sum_probs=60.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe--------------cC-------------ccccccHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH--------------LG-------------LPVFNSVAE 110 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i--------------~G-------------vPVy~Sv~e 110 (182)
-+||.|+|+ |.||..++..+.+.|.+|+ .+|.....-+. .| +....++ +
T Consensus 314 i~kV~VIGa-G~MG~~iA~~la~aG~~V~--l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~ 389 (715)
T 1wdk_A 314 VKQAAVLGA-GIMGGGIAYQSASKGTPIL--MKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-G 389 (715)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEE--EECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-T
T ss_pred CCEEEEECC-ChhhHHHHHHHHhCCCEEE--EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-H
Confidence 467999998 9999999999999999888 55554311000 01 2334455 4
Q ss_pred HHhccCCcEEEEeeChHH--HHHHHHHHHHcCCC--EEE-EeCCCCCHHHHH
Q 030169 111 AKAETKANASVIYVPPPF--AAAAIMEAMEAELD--LVV-CITEGIPQHDMV 157 (182)
Q Consensus 111 a~~~~~~DvaVdfVpp~a--v~~a~~eAie~GIk--~VV-~iTeG~~~eD~~ 157 (182)
+.+ ++|++|..||.+. -.++..+ ++..++ .|+ ..|++++..++.
T Consensus 390 ~~~--~aDlVIeaV~e~~~vk~~v~~~-l~~~~~~~~IlasntStl~i~~la 438 (715)
T 1wdk_A 390 DFG--NVDLVVEAVVENPKVKQAVLAE-VENHVREDAILASNTSTISISLLA 438 (715)
T ss_dssp TGG--GCSEEEECCCSCHHHHHHHHHH-HHTTSCTTCEEEECCSSSCHHHHG
T ss_pred HHC--CCCEEEEcCCCCHHHHHHHHHH-HHhhCCCCeEEEeCCCCCCHHHHH
Confidence 455 6999999999665 2344444 444332 233 348899987543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.097 Score=42.95 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++.+..++. +..|...++.+.++++++
T Consensus 29 ~k~vlVTGas~gIG~aia~~L~~~G~~V~--~~~r~~~~--~-----~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (276)
T 2b4q_A 29 GRIALVTGGSRGIGQMIAQGLLEAGARVF--ICARDAEA--C-----ADTATRLSAYGDCQAIPADLSSEAGARRLAQAL 99 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EECSCHHH--H-----HHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHH
Confidence 45699999999999999999999999988 44443211 0 00112211100111 124667788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 100 ~~~~g~iD~lvn-nAg~ 115 (276)
T 2b4q_A 100 GELSARLDILVN-NAGT 115 (276)
T ss_dssp HHHCSCCSEEEE-CCCC
T ss_pred HHhcCCCCEEEE-CCCC
Confidence 765 6888888 5553
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.24 Score=40.60 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
.+.++|.|++|-.|+.+++.+.+.|.+|+ .++.... .++++.++. ++ =+..|.+.++.+.++++
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 94 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVA--LAGRRLD-----------ALQETAAEIGDDALCVPTDVTDPDSVRALFT 94 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHHTSCCEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHH-----------HHHHHHHHhCCCeEEEEecCCCHHHHHHHHH
Confidence 34578889999999999999999999888 4443221 122222211 22 23457788899999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 95 ~~~~~~g~iD~lVn-nAg~ 112 (272)
T 4dyv_A 95 ATVEKFGRVDVLFN-NAGT 112 (272)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88877 7888888 6554
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.43 E-value=0.057 Score=45.44 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=55.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCC--Ce---Eec--------Cccc-cccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKG--GT---EHL--------GLPV-FNSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~--G~---~i~--------GvPV-y~Sv~ea~~~~~~DvaVd 122 (182)
+||.|+|+ |.||..++..+.+.| .+|+ .+|.... .. +.. .+.+ ..+. ++.+ ++|++++
T Consensus 2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~--l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~--~aDvVii 75 (309)
T 1hyh_A 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV--FIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALA--DADVVIS 75 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEE--EECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGT--TCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEE--EEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhC--CCCEEEE
Confidence 58999996 999999999888888 5677 6555431 00 000 1334 3455 4455 7999999
Q ss_pred eeChHH--------------------HHHHHHHHHHcCCCE-EEEeCCC
Q 030169 123 YVPPPF--------------------AAAAIMEAMEAELDL-VVCITEG 150 (182)
Q Consensus 123 fVpp~a--------------------v~~a~~eAie~GIk~-VV~iTeG 150 (182)
.+++.. ..++++...+...+. ++++|-+
T Consensus 76 av~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp 124 (309)
T 1hyh_A 76 TLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP 124 (309)
T ss_dssp CCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred ecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence 999755 357777666655444 3444443
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.18 Score=40.38 Aligned_cols=83 Identities=10% Similarity=-0.001 Sum_probs=56.9
Q ss_pred CceEEEEccCCC--CchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc---CCc-EEEEeeChHHHHH
Q 030169 58 NTRVICQGITGK--NGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KAN-ASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGk--mG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~---~~D-vaVdfVpp~av~~ 131 (182)
..+++|.|++|. .|+.+++.+.+.|.+|+ .++..... -..+++..++. ++. +..|.+.++.+.+
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~--~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 76 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGARLI--FTYAGERL--------EKSVHELAGTLDRNDSIILPCDVTNDAEIET 76 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEE--EEESSGGG--------HHHHHHHHHTSSSCCCEEEECCCSSSHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEE--EecCchHH--------HHHHHHHHHhcCCCCceEEeCCCCCHHHHHH
Confidence 356999999987 99999999999999988 44332211 11233333321 122 3457788999999
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030169 132 AIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~ 151 (182)
+++++.+. ++..+|+ ..|+
T Consensus 77 ~~~~~~~~~g~id~li~-~Ag~ 97 (266)
T 3oig_A 77 CFASIKEQVGVIHGIAH-CIAF 97 (266)
T ss_dssp HHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHHhCCeeEEEE-cccc
Confidence 99998876 6888887 5554
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.083 Score=46.43 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=48.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCe-Ee---cCccc--cccHHHHHhccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGT-EH---LGLPV--FNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~-~i---~GvPV--y~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+..+|+|+|+ |.+|+.+++.+...|. +|+ .+|+....- +. .|..+ |.++.++.. ++|++++.+|...
T Consensus 166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~--v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~--~aDvVi~at~~~~ 239 (404)
T 1gpj_A 166 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVL--VANRTYERAVELARDLGGEAVRFDELVDHLA--RSDVVVSATAAPH 239 (404)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCSEEE--EECSSHHHHHHHHHHHTCEECCGGGHHHHHH--TCSEEEECCSSSS
T ss_pred cCCEEEEECh-HHHHHHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHcCCceecHHhHHHHhc--CCCEEEEccCCCC
Confidence 4678999999 9999999999999997 777 666543110 11 13222 456777776 7999999998654
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.12 Score=41.07 Aligned_cols=89 Identities=19% Similarity=0.154 Sum_probs=55.7
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHH
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAA 131 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~ 131 (182)
...++.+|+|.|++|-.|+.+++.+.+.|.+++ ......... . . ...++..+. .++. +..|...++.+.+
T Consensus 9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~-~~~~~~~~~--~--~---~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 80 (256)
T 3ezl_A 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVV-AGCGPNSPR--R--V---KWLEDQKALGFDFYASEGNVGDWDSTKQ 80 (256)
T ss_dssp ----CEEEEETTTTSHHHHHHHHHHHHTTEEEE-EEECTTCSS--H--H---HHHHHHHHTTCCCEEEECCTTCHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCCHHH--H--H---HHHHHHHhcCCeeEEEecCCCCHHHHHH
Confidence 345567799999999999999999999998888 433233211 0 0 112222111 1222 2346778888889
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030169 132 AIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~ 151 (182)
+++++.+. ++..+|+ ..|+
T Consensus 81 ~~~~~~~~~g~id~lv~-~Ag~ 101 (256)
T 3ezl_A 81 AFDKVKAEVGEIDVLVN-NAGI 101 (256)
T ss_dssp HHHHHHHHTCCEEEEEE-CCCC
T ss_pred HHHHHHHhcCCCCEEEE-CCCC
Confidence 88888876 5677777 6554
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.15 Score=40.78 Aligned_cols=85 Identities=11% Similarity=0.103 Sum_probs=56.4
Q ss_pred CceEEEEccC--CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHH
Q 030169 58 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~t--GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a 132 (182)
..+++|.|++ |..|..+++.+.+.|.+++ .++...... .-..++++.+....+ +..|...++.+.++
T Consensus 20 ~k~vlITGas~~~giG~~~a~~l~~~G~~v~--~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 91 (267)
T 3gdg_A 20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVA--ITYASRAQG------AEENVKELEKTYGIKAKAYKCQVDSYESCEKL 91 (267)
T ss_dssp TCEEEETTCCSSSSHHHHHHHHHHHTSCEEE--ECBSSSSSH------HHHHHHHHHHHHCCCEECCBCCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHCCCeEE--EEeCCcchh------HHHHHHHHHHhcCCceeEEecCCCCHHHHHHH
Confidence 4568899999 8999999999999999888 443333110 011233332221222 23467788899999
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
++++.+. ++..+|+ ..|+
T Consensus 92 ~~~~~~~~g~id~li~-nAg~ 111 (267)
T 3gdg_A 92 VKDVVADFGQIDAFIA-NAGA 111 (267)
T ss_dssp HHHHHHHTSCCSEEEE-CCCC
T ss_pred HHHHHHHcCCCCEEEE-CCCc
Confidence 9888876 6888887 5554
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.092 Score=41.40 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++.+ ...++ ..|...++.+.++++
T Consensus 11 ~~~vlVtGasggiG~~la~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 80 (255)
T 1fmc_A 11 GKCAIITGAGAGIGKEIAITFATAGASVV--VSDINADA--A-----NHVVDEIQQ-LGGQAFACRCDITSEQELSALAD 80 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEE--EEESCHHH--H-----HHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEE--EEcCCHHH--H-----HHHHHHHHH-hCCceEEEEcCCCCHHHHHHHHH
Confidence 46799999999999999999999999888 44443211 0 011122211 12222 345667778888877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..||. ..|+
T Consensus 81 ~~~~~~~~~d~vi~-~Ag~ 98 (255)
T 1fmc_A 81 FAISKLGKVDILVN-NAGG 98 (255)
T ss_dssp HHHHHHSSCCEEEE-CCCC
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 76655 7888888 5554
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.2 Score=40.53 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+ ...+ +..|...++.+.++++
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G~~V~--~~~r~~~~--~~-----~~~~~l~~-~~~~~~~~~~Dl~~~~~v~~~~~ 100 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLKSKLV--LWDINKHG--LE-----ETAAKCKG-LGAKVHTFVVDCSNREDIYSSAK 100 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHH-TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEEcCHHH--HH-----HHHHHHHh-cCCeEEEEEeeCCCHHHHHHHHH
Confidence 46799999999999999999999999988 44443211 00 01122211 1222 2346677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 101 ~~~~~~g~iD~li~-~Ag~ 118 (272)
T 1yb1_A 101 KVKAEIGDVSILVN-NAGV 118 (272)
T ss_dssp HHHHHTCCCSEEEE-CCCC
T ss_pred HHHHHCCCCcEEEE-CCCc
Confidence 77765 6888888 6564
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.52 Score=38.05 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=57.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccc--cccHHHH---HhccCCcE---EEEeeChHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV--FNSVAEA---KAETKANA---SVIYVPPPFA 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPV--y~Sv~ea---~~~~~~Dv---aVdfVpp~av 129 (182)
..+++|.|++|-.|+.+++.+.+.|.+++ .++........ ..+. -..+++. .++...++ ..|.+.++.+
T Consensus 13 gk~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 13 GKVAFITGAARGQGRAHAVRLAADGADII--AVDLCDQIASV-PYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEECCSCCTTC-SSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE--EEecccccccc-cccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 35689999999999999999999999988 44332110000 0000 0112221 11112232 3577888999
Q ss_pred HHHHHHHHHc--CCCEEEEeCCCCC
Q 030169 130 AAAIMEAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 130 ~~a~~eAie~--GIk~VV~iTeG~~ 152 (182)
.++++++.+. ++..+|+ ..|+.
T Consensus 90 ~~~~~~~~~~~g~id~lv~-nAg~~ 113 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVA-NAGIA 113 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEE-CCCCC
T ss_pred HHHHHHHHHHcCCCCEEEE-CCCCC
Confidence 9999988876 7888888 66653
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.17 Score=40.71 Aligned_cols=83 Identities=12% Similarity=0.025 Sum_probs=55.5
Q ss_pred CceEEEEccC--CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~t--GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~ 133 (182)
.++++|.|++ |-.|+.+++.+.+.|.+|+ .++..... -..++++.++. .. =+..|...++.+.+++
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~--~~~r~~~~--------~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGAELA--FTYQNDKL--------KGRVEEFAAQLGSDIVLQCDVAEDASIDTMF 78 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEE--EEESSTTT--------HHHHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEE--EEcCcHHH--------HHHHHHHHHhcCCcEEEEccCCCHHHHHHHH
Confidence 3568999999 9999999999999999988 33332211 11233332211 11 2345778888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~~g~iD~lv~-~Ag~ 97 (265)
T 1qsg_A 79 AELGKVWPKFDGFVH-SIGF 97 (265)
T ss_dssp HHHHTTCSSEEEEEE-CCCC
T ss_pred HHHHHHcCCCCEEEE-CCCC
Confidence 888876 5777777 6564
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.25 Score=38.79 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=53.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.++...+ +..|...++.+.+++++
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGDRVA--ALDLSAET--LE-----ETARTHWHAYADKVLRVRADVADEGDVNAAIAA 73 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 4689999999999999999999999888 44443211 00 0011110111112 23466778888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..+|+ ..|+
T Consensus 74 ~~~~~~~id~li~-~Ag~ 90 (250)
T 2cfc_A 74 TMEQFGAIDVLVN-NAGI 90 (250)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 7765 7888888 5554
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.27 Score=39.72 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=56.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+..+++|.|++|-.|+.+++.+.+.|.+++ ...+..... ...+.+.+++...+ +..|.+.++.+.+++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv-~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIV-INYARSKKA--------ALETAEEIEKLGVKVLVVKANVGQPAKIKEMF 73 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEESSCHHH--------HHHHHHHHHTTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEE-EEcCCCHHH--------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 346789999999999999999999999988 322333211 01111222222223 235778888999999
Q ss_pred HHHHHc--CCCEEEEeCCC
Q 030169 134 MEAMEA--ELDLVVCITEG 150 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG 150 (182)
+++.+. ++..+|+ ..|
T Consensus 74 ~~~~~~~g~id~lv~-nAg 91 (258)
T 3oid_A 74 QQIDETFGRLDVFVN-NAA 91 (258)
T ss_dssp HHHHHHHSCCCEEEE-CCC
T ss_pred HHHHHHcCCCCEEEE-CCC
Confidence 888876 6888888 555
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.22 Score=40.22 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+|+ .++..... . -...+++.+ ...+ +..|.+.++.+.++++
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~ 80 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGADLV--LAARTVER--L-----EDVAKQVTD-TGRRALSVGTDITDDAQVAHLVD 80 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcCEEE--EEeCCHHH--H-----HHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHH
Confidence 35699999999999999999999999988 44433211 0 011122211 1222 3357788899999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 81 ~~~~~~g~id~lv~-nAg~ 98 (264)
T 3ucx_A 81 ETMKAYGRVDVVIN-NAFR 98 (264)
T ss_dssp HHHHHTSCCSEEEE-CCCS
T ss_pred HHHHHcCCCcEEEE-CCCC
Confidence 88877 7888888 4443
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.055 Score=43.18 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=52.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+++ + ++..... ... ...+++ ++...+ +..|...++.+.++++
T Consensus 21 ~k~vlItGasggiG~~la~~l~~~G~~v~-~-~~r~~~~-~~~-----~~~~~l-~~~~~~~~~~~~D~~~~~~~~~~~~ 91 (274)
T 1ja9_A 21 GKVALTTGAGRGIGRGIAIELGRRGASVV-V-NYGSSSK-AAE-----EVVAEL-KKLGAQGVAIQADISKPSEVVALFD 91 (274)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE-E-EESSCHH-HHH-----HHHHHH-HHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE-E-EcCCchH-HHH-----HHHHHH-HhcCCcEEEEEecCCCHHHHHHHHH
Confidence 46799999999999999999999999988 3 3331100 000 001121 111223 2346677788888887
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.++ ++..+|+ ..|+
T Consensus 92 ~~~~~~~~~d~vi~-~Ag~ 109 (274)
T 1ja9_A 92 KAVSHFGGLDFVMS-NSGM 109 (274)
T ss_dssp HHHHHHSCEEEEEC-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77665 6777776 5554
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.23 E-value=0.11 Score=41.46 Aligned_cols=86 Identities=13% Similarity=0.009 Sum_probs=58.3
Q ss_pred ecCCceEEEEccC--CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHH
Q 030169 55 VDKNTRVICQGIT--GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAA 130 (182)
Q Consensus 55 i~~~trViVvG~t--GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~ 130 (182)
-.+.++|+|.|++ |-.|+.+++.+.+.|.+++ .++..... -..++++.++. ++ =+..|.+.++.+.
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~--~~~r~~~~--------~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 80 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELA--FTYVGDRF--------KDRITEFAAEFGSELVFPCDVADDAQID 80 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEE--EEESSGGG--------HHHHHHHHHHTTCCCEEECCTTCHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEE--EEecchhh--------HHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 3456779999998 9999999999999999888 44433211 11233332221 12 2456778899999
Q ss_pred HHHHHHHHc--CCCEEEEeCCCC
Q 030169 131 AAIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 131 ~a~~eAie~--GIk~VV~iTeG~ 151 (182)
++++++.+. ++..+|+ ..|+
T Consensus 81 ~~~~~~~~~~g~id~lv~-nAg~ 102 (271)
T 3ek2_A 81 ALFASLKTHWDSLDGLVH-SIGF 102 (271)
T ss_dssp HHHHHHHHHCSCEEEEEE-CCCC
T ss_pred HHHHHHHHHcCCCCEEEE-CCcc
Confidence 999998877 5677777 6554
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=93.23 E-value=0.17 Score=41.30 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeC----hHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVP----PPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVp----p~av~ 130 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... .. -...+++.++...+ +..|... ++.+.
T Consensus 23 ~k~~lVTGas~gIG~aia~~L~~~G~~V~--~~~r~~~~-~~-----~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~ 94 (288)
T 2x9g_A 23 APAAVVTGAAKRIGRAIAVKLHQTGYRVV--IHYHNSAE-AA-----VSLADELNKERSNTAVVCQADLTNSNVLPASCE 94 (288)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHHTCEEE--EEESSCHH-HH-----HHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCeEE--EEeCCchH-HH-----HHHHHHHHhhcCCceEEEEeecCCccCCHHHHH
Confidence 35689999999999999999999999988 33332200 00 00112221111222 2346667 78888
Q ss_pred HHHHHHHHc--CCCEEEEeCCCC
Q 030169 131 AAIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 131 ~a~~eAie~--GIk~VV~iTeG~ 151 (182)
++++++.+. ++..+|+ ..|+
T Consensus 95 ~~~~~~~~~~g~iD~lvn-nAG~ 116 (288)
T 2x9g_A 95 EIINSCFRAFGRCDVLVN-NASA 116 (288)
T ss_dssp HHHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHHhcCCCCEEEE-CCCC
Confidence 888887765 7888888 6554
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.12 Score=43.54 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=51.1
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCc-ccc-----ccHHHHHhc---cCCcEEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGL-PVF-----NSVAEAKAE---TKANASV 121 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~Gv-PVy-----~Sv~ea~~~---~~~DvaV 121 (182)
.+.+..+|+|.|++|..|..+++.+...|.+++ .++......+. .|. .++ .++.+.+.+ ..+|+++
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~--~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi 243 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVL--GIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVI 243 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEE--EEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEE
Confidence 356778899999999999999999999999888 34432211110 111 111 233333321 1689999
Q ss_pred EeeChHHHHHHHHHHHHc
Q 030169 122 IYVPPPFAAAAIMEAMEA 139 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~ 139 (182)
+.+......+.+..++..
T Consensus 244 ~~~g~~~~~~~~~~~l~~ 261 (347)
T 2hcy_A 244 NVSVSEAAIEASTRYVRA 261 (347)
T ss_dssp ECSSCHHHHHHHTTSEEE
T ss_pred ECCCcHHHHHHHHHHHhc
Confidence 988864444444444443
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.071 Score=42.56 Aligned_cols=83 Identities=6% Similarity=0.058 Sum_probs=55.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc-EEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN-ASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D-vaVdfVpp~av~~a 132 (182)
.++|+|.|++|..|+.+++.+.+.| .+|+ .++..... .. .++++.+.. ++. +..|...++.+.++
T Consensus 21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~--~~~r~~~~-----~~---~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 90 (267)
T 1sny_A 21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLF--TTCRNREQ-----AK---ELEDLAKNHSNIHILEIDLRNFDAYDKL 90 (267)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEE--EEESCTTS-----CH---HHHHHHHHCTTEEEEECCTTCGGGHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEE--EEecChhh-----hH---HHHHhhccCCceEEEEecCCChHHHHHH
Confidence 3569999999999999999999998 8888 44443322 11 233332211 221 23466778888888
Q ss_pred HHHHHHc----CCCEEEEeCCCC
Q 030169 133 IMEAMEA----ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~----GIk~VV~iTeG~ 151 (182)
+++..+. ++..+|. ..|+
T Consensus 91 ~~~~~~~~g~~~id~li~-~Ag~ 112 (267)
T 1sny_A 91 VADIEGVTKDQGLNVLFN-NAGI 112 (267)
T ss_dssp HHHHHHHHGGGCCSEEEE-CCCC
T ss_pred HHHHHHhcCCCCccEEEE-CCCc
Confidence 8777654 6888888 6564
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.29 Score=39.76 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++... +.++++.++...+ +..|...++.+.++++
T Consensus 6 ~k~vlITGas~gIG~aia~~l~~~G~~V~--~~~r~~-----------~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (263)
T 2a4k_A 6 GKTILVTGAASGIGRAALDLFAREGASLV--AVDREE-----------RLLAEAVAALEAEAIAVVADVSDPKAVEAVFA 72 (263)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCH-----------HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCH-----------HHHHHHHHHhcCceEEEEcCCCCHHHHHHHHH
Confidence 35699999999999999999999999888 444322 1123333321112 2356778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 73 ~~~~~~g~iD~lvn-nAg~ 90 (263)
T 2a4k_A 73 EALEEFGRLHGVAH-FAGV 90 (263)
T ss_dssp HHHHHHSCCCEEEE-GGGG
T ss_pred HHHHHcCCCcEEEE-CCCC
Confidence 88765 6888887 5443
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.093 Score=42.15 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=51.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 139 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie~ 139 (182)
+++|.|++|..|+.+++.+.+.|.+|+ .++..... . ..+.+ +++...++..+ .++.+.++++++.+.
T Consensus 3 ~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~------~~~~~-l~~~~~~~~~~--d~~~v~~~~~~~~~~ 69 (254)
T 1zmt_A 3 TAIVTNVKHFGGMGSALRLSEAGHTVA--CHDESFKQ--K------DELEA-FAETYPQLKPM--SEQEPAELIEAVTSA 69 (254)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEE--ECCGGGGS--H------HHHHH-HHHHCTTSEEC--CCCSHHHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHH-HHhcCCcEEEE--CHHHHHHHHHHHHHH
Confidence 588899999999999999999999988 44443211 1 11222 22223343332 667777777777765
Q ss_pred --CCCEEEEeCCCCC
Q 030169 140 --ELDLVVCITEGIP 152 (182)
Q Consensus 140 --GIk~VV~iTeG~~ 152 (182)
++..+|+ ..|+.
T Consensus 70 ~g~iD~lv~-nAg~~ 83 (254)
T 1zmt_A 70 YGQVDVLVS-NDIFA 83 (254)
T ss_dssp HSCCCEEEE-ECCCC
T ss_pred hCCCCEEEE-CCCcC
Confidence 7888888 55543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.21 E-value=0.24 Score=40.18 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=55.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+ ...+ +..|...++.+.++++
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 90 (273)
T 1ae1_A 21 GTTALVTGGSKGIGYAIVEELAGLGARVY--TCSRNEKE--LD-----ECLEIWRE-KGLNVEGSVCDLLSRTERDKLMQ 90 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHH-TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHh-cCCceEEEECCCCCHHHHHHHHH
Confidence 35699999999999999999999999988 44443211 00 11122211 1222 3356778888888888
Q ss_pred HHHH---cCCCEEEEeCCCC
Q 030169 135 EAME---AELDLVVCITEGI 151 (182)
Q Consensus 135 eAie---~GIk~VV~iTeG~ 151 (182)
++.+ .++..+|+ ..|+
T Consensus 91 ~~~~~~~g~id~lv~-nAg~ 109 (273)
T 1ae1_A 91 TVAHVFDGKLNILVN-NAGV 109 (273)
T ss_dssp HHHHHTTSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCcEEEE-CCCC
Confidence 8776 36888888 5554
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.22 Score=40.27 Aligned_cols=84 Identities=15% Similarity=0.197 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D---vaVdfVpp~av~~a~ 133 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+.. ..+ +..|...++.+.+++
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 102 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGLKVV--GCARTVGN--IE-----ELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 102 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEECChHH--HH-----HHHHHHHhcCCCceEEEEEecCCCHHHHHHHH
Confidence 45699999999999999999999999988 44433210 00 0011211111 111 234667788888887
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
++..+. ++..+|+ ..|+
T Consensus 103 ~~~~~~~g~iD~vi~-~Ag~ 121 (279)
T 1xg5_A 103 SAIRSQHSGVDICIN-NAGL 121 (279)
T ss_dssp HHHHHHHCCCSEEEE-CCCC
T ss_pred HHHHHhCCCCCEEEE-CCCC
Confidence 776654 6888888 5554
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.13 Score=42.45 Aligned_cols=84 Identities=17% Similarity=0.049 Sum_probs=55.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC---CcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK---ANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~---~DvaVdfVpp~av~~a~~ 134 (182)
...++|.|++|-.|+.+++.+.+.|.+|+ .++..... . -...+++.+... .=+..|.+.++.+.++++
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~~V~--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGYSVV--ITGRRPDV--L-----DAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H-----HHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHH
Confidence 35688889999999999999999999988 44433211 0 011122211111 123457788999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 104 ~~~~~~g~iD~lvn-nAG~ 121 (281)
T 4dry_A 104 AVRAEFARLDLLVN-NAGS 121 (281)
T ss_dssp HHHHHHSCCSEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88876 7888888 6554
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.23 Score=41.04 Aligned_cols=84 Identities=10% Similarity=-0.019 Sum_probs=57.9
Q ss_pred CceEEEEccCC--CCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITG--KNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tG--kmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~ 133 (182)
..+++|.|++| -.|+.+++.+.+.|.+|+ .++..... -..+++..++. .+ =+..|.+.++.+.+++
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~--~~~r~~~~--------~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 99 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVA--LTYLSETF--------KKRVDPLAESLGVKLTVPCDVSDAESVDNMF 99 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEE--EEESSGGG--------HHHHHHHHHHHTCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEE--EEeCChHH--------HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH
Confidence 45689999987 899999999999999988 44433211 11223332221 22 2345778899999999
Q ss_pred HHHHHc--CCCEEEEeCCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~~ 152 (182)
+++.+. ++..+|+ ..|+.
T Consensus 100 ~~~~~~~g~iD~lVn-nAG~~ 119 (296)
T 3k31_A 100 KVLAEEWGSLDFVVH-AVAFS 119 (296)
T ss_dssp HHHHHHHSCCSEEEE-CCCCC
T ss_pred HHHHHHcCCCCEEEE-CCCcC
Confidence 998876 7888888 66654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.4 Score=38.40 Aligned_cols=83 Identities=10% Similarity=0.093 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+ ...+ +..|...++.+.++++
T Consensus 9 ~k~vlVTGas~giG~~ia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 78 (260)
T 2ae2_A 9 GCTALVTGGSRGIGYGIVEELASLGASVY--TCSRNQKE--LN-----DCLTQWRS-KGFKVEASVCDLSSRSERQELMN 78 (260)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHH-TTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHH
Confidence 45699999999999999999999999988 44433211 00 11122211 1222 2346778888888888
Q ss_pred HHHHc---CCCEEEEeCCCC
Q 030169 135 EAMEA---ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~---GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~~g~id~lv~-~Ag~ 97 (260)
T 2ae2_A 79 TVANHFHGKLNILVN-NAGI 97 (260)
T ss_dssp HHHHHTTTCCCEEEE-CCCC
T ss_pred HHHHHcCCCCCEEEE-CCCC
Confidence 87764 5888888 6554
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.12 Score=45.62 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=64.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCC--------------Ce----------E--ec--Ccccc--cc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKG--------------GT----------E--HL--GLPVF--NS 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~--------------G~----------~--i~--GvPVy--~S 107 (182)
.||.|-|| |+.|+.+.+.+.+. +.+|| |--||... |+ . ++ .++|| .+
T Consensus 2 ~kv~INGf-GrIGr~v~R~~~~~~~~~iv-aiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d 79 (332)
T 3pym_A 2 VRVAINGF-GRIGRLVMRIALSRPNVEVV-ALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERD 79 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHSTTCEEE-EEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred eEEEEECC-CcHHHHHHHHHHhCCCcEEE-EEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeecc
Confidence 58999999 99999999988776 49999 86666210 10 0 12 36676 34
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
.++++ ...++|+++..+......+-+...+++|.+.|++
T Consensus 80 p~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 119 (332)
T 3pym_A 80 PANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119 (332)
T ss_dssp GGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEE
T ss_pred cccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEE
Confidence 66653 2347999999888888888889999999999887
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.22 Score=40.15 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... ...+.+.+.+...+ +..|...++.+.++++
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~~V~--~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 98 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKLGSLGARVV--LTARDVEK--------LRAVEREIVAAGGEAESHACDLSHSDAIAAFAT 98 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--------HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEECCHHH--------HHHHHHHHHHhCCceeEEEecCCCHHHHHHHHH
Confidence 45799999999999999999999999988 44443211 01111111111222 2346778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 99 ~~~~~~g~id~lv~-~Ag~ 116 (262)
T 3rkr_A 99 GVLAAHGRCDVLVN-NAGV 116 (262)
T ss_dssp HHHHHHSCCSEEEE-CCCC
T ss_pred HHHHhcCCCCEEEE-CCCc
Confidence 87765 5888887 6665
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.27 Score=39.03 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++..... . ...+.+.+++...+ +..|...++.+.++++
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~~V~--~~~r~~~~-~------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (261)
T 1gee_A 7 GKVVVITGSSTGLGKSMAIRFATEKAKVV--VNYRSKED-E------ANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESSCHH-H------HHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEcCCChH-H------HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 35799999999999999999999999988 44431101 0 01111111111222 2346677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 78 ~~~~~~g~id~li~-~Ag~ 95 (261)
T 1gee_A 78 SAIKEFGKLDVMIN-NAGL 95 (261)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77765 7888888 5554
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.063 Score=42.44 Aligned_cols=85 Identities=14% Similarity=0.026 Sum_probs=54.4
Q ss_pred CceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|-.|+.+++.+.+ .|.+|+ .++..... . -...+++.+. .++. +..|...++.+.++++
T Consensus 4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~--~~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 74 (276)
T 1wma_A 4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVV--LTARDVTR--G-----QAAVQQLQAEGLSPRFHQLDIDDLQSIRALRD 74 (276)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEE--EEESSHHH--H-----HHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHhcCCeEE--EEeCChHH--H-----HHHHHHHHhcCCeeEEEECCCCCHHHHHHHHH
Confidence 46789999999999999999998 898888 44432210 0 0112222111 1222 3356677888888888
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030169 135 EAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~ 152 (182)
+..+. ++..+|. ..|+.
T Consensus 75 ~~~~~~g~id~li~-~Ag~~ 93 (276)
T 1wma_A 75 FLRKEYGGLDVLVN-NAGIA 93 (276)
T ss_dssp HHHHHHSSEEEEEE-CCCCC
T ss_pred HHHHhcCCCCEEEE-CCccc
Confidence 77665 6777887 55554
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.045 Score=52.16 Aligned_cols=94 Identities=12% Similarity=-0.054 Sum_probs=59.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE------------------e---------cCccccccHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE------------------H---------LGLPVFNSVAE 110 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~------------------i---------~GvPVy~Sv~e 110 (182)
-+||.|+|+ |.||..++..+.+.|.+|+ .+|.....-+ + ..+....++ +
T Consensus 312 ~~kV~VIGa-G~MG~~iA~~la~aG~~V~--l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~ 387 (725)
T 2wtb_A 312 IKKVAIIGG-GLMGSGIATALILSNYPVI--LKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-E 387 (725)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHTTTCCEE--EECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-G
T ss_pred CcEEEEEcC-CHhhHHHHHHHHhCCCEEE--EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-H
Confidence 367999998 9999999999999999888 5554321100 0 012344555 3
Q ss_pred HHhccCCcEEEEeeChHHH--HHHHHHHHHc-CCCEEE-EeCCCCCHHHHH
Q 030169 111 AKAETKANASVIYVPPPFA--AAAIMEAMEA-ELDLVV-CITEGIPQHDMV 157 (182)
Q Consensus 111 a~~~~~~DvaVdfVpp~av--~~a~~eAie~-GIk~VV-~iTeG~~~eD~~ 157 (182)
+.+ ++|++|..||.+.. .++..+..+. .-..|+ .-|++++..++.
T Consensus 388 ~~~--~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la 436 (725)
T 2wtb_A 388 SFR--DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIG 436 (725)
T ss_dssp GGT--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHT
T ss_pred HHC--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHH
Confidence 455 79999999998763 2443333222 112233 337899986543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.31 Score=40.23 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=56.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHH---hccCCcE---EEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK---AETKANA---SVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~---~~~~~Dv---aVdfVpp~av~~a 132 (182)
..++|.|++|-.|+.+++.+.+.|.+++..+.++...+..... .--+.+++.. ++...++ ..|.+.++.+.++
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 107 (299)
T 3t7c_A 29 KVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPM-STPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAA 107 (299)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCC-CCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccc-cCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence 5689999999999999999999999988233443322210000 0001122221 1112232 4577888999999
Q ss_pred HHHHHHc--CCCEEEEeCCC
Q 030169 133 IMEAMEA--ELDLVVCITEG 150 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG 150 (182)
++++.+. ++..+|+ ..|
T Consensus 108 ~~~~~~~~g~iD~lv~-nAg 126 (299)
T 3t7c_A 108 VDDGVTQLGRLDIVLA-NAA 126 (299)
T ss_dssp HHHHHHHHSCCCEEEE-CCC
T ss_pred HHHHHHHhCCCCEEEE-CCC
Confidence 9988876 6888887 544
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.23 Score=39.76 Aligned_cols=80 Identities=13% Similarity=0.054 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++.... ..+++.++...+ +..|...++.+.++++
T Consensus 6 ~k~vlVTGas~giG~~ia~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (253)
T 1hxh_A 6 GKVALVTGGASGVGLEVVKLLLGEGAKVA--FSDINEA-----------AGQQLAAELGERSMFVRHDVSSEADWTLVMA 72 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EECSCHH-----------HHHHHHHHHCTTEEEECCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHcCCceEEEEccCCCHHHHHHHHH
Confidence 35689999999999999999999999888 4443321 122222211112 2246677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 73 ~~~~~~g~id~lv~-~Ag~ 90 (253)
T 1hxh_A 73 AVQRRLGTLNVLVN-NAGI 90 (253)
T ss_dssp HHHHHHCSCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87765 5888888 6554
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.13 Score=42.10 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=53.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eAi 137 (182)
++++|.|++|..|+.+++.+.+.|.+|+ .++..... +++.... .+ -+..|.+.++.+.++++++.
T Consensus 17 k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~ 82 (266)
T 3p19_A 17 KLVVITGASSGIGEAIARRFSEEGHPLL--LLARRVER-----------LKALNLP-NTLCAQVDVTDKYTFDTAITRAE 82 (266)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCCEE--EEESCHHH-----------HHTTCCT-TEEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-----------HHHhhcC-CceEEEecCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999888 44332210 1111110 11 13456778888888888888
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|+ ..|+
T Consensus 83 ~~~g~iD~lvn-nAg~ 97 (266)
T 3p19_A 83 KIYGPADAIVN-NAGM 97 (266)
T ss_dssp HHHCSEEEEEE-CCCC
T ss_pred HHCCCCCEEEE-CCCc
Confidence 76 6777887 6564
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.18 Score=39.92 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++ ++...+ +..|...++.+.++++
T Consensus 13 ~k~vlItGasggiG~~la~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~l-~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (260)
T 3awd_A 13 NRVAIVTGGAQNIGLACVTALAEAGARVI--IADLDEAM--AT-----KAVEDL-RMEGHDVSSVVMDVTNTESVQNAVR 82 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHH-HHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHH-HhcCCceEEEEecCCCHHHHHHHHH
Confidence 45699999999999999999999999988 44443211 00 011222 111222 2346677788888887
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 83 ~~~~~~~~id~vi~-~Ag~ 100 (260)
T 3awd_A 83 SVHEQEGRVDILVA-CAGI 100 (260)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77665 6888887 5443
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.24 Score=40.25 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+....+ +..|...++.+.++++
T Consensus 26 ~k~vlITGasggiG~~la~~L~~~G~~V~--~~~r~~~~--~~-----~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~ 96 (302)
T 1w6u_A 26 GKVAFITGGGTGLGKGMTTLLSSLGAQCV--IASRKMDV--LK-----ATAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 96 (302)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHH
Confidence 35799999999999999999999999988 44443211 00 0112221110122 2346677888888888
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. .+..+|+ ..|
T Consensus 97 ~~~~~~g~id~li~-~Ag 113 (302)
T 1w6u_A 97 ELIKVAGHPNIVIN-NAA 113 (302)
T ss_dssp HHHHHTCSCSEEEE-CCC
T ss_pred HHHHHcCCCCEEEE-CCC
Confidence 87765 5788887 555
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.45 Score=38.10 Aligned_cols=85 Identities=15% Similarity=0.086 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... .. -...+++.+....++ ..|...++.+.++++
T Consensus 4 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~-~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 75 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGLGIATALAAQGADIV--LNGFGDAA-EI-----EKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVD 75 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EECCSCHH-HH-----HHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCCEEE--EEeCCcch-HH-----HHHHHHHHhccCCcEEEEECCCCCHHHHHHHHH
Confidence 35688999999999999999999999988 44443211 00 001112111102222 246677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 76 ~~~~~~g~iD~lv~-~Ag~ 93 (260)
T 1x1t_A 76 NAVRQMGRIDILVN-NAGI 93 (260)
T ss_dssp HHHHHHSCCSEEEE-CCCC
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 87765 6888888 5554
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.26 Score=40.33 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+|+ .++..... .-...+++.+ ...++ ..|.+.++.+.++++
T Consensus 26 gk~~lVTGas~gIG~aia~~la~~G~~V~--~~~r~~~~-------~~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~ 95 (271)
T 4ibo_A 26 GRTALVTGSSRGLGRAMAEGLAVAGARIL--INGTDPSR-------VAQTVQEFRN-VGHDAEAVAFDVTSESEIIEAFA 95 (271)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--ECCSCHHH-------HHHHHHHHHH-TTCCEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH-------HHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHH
Confidence 35688889999999999999999999888 44432211 0011222211 12232 246678888889888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 96 ~~~~~~g~iD~lv~-nAg~ 113 (271)
T 4ibo_A 96 RLDEQGIDVDILVN-NAGI 113 (271)
T ss_dssp HHHHHTCCCCEEEE-CCCC
T ss_pred HHHHHCCCCCEEEE-CCCC
Confidence 88876 5888888 6664
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.24 Score=40.43 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=55.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+ ...+ +..|...++.+.++++
T Consensus 22 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~l~~-~~~~~~~~~~Dv~~~~~v~~~~~ 91 (277)
T 2rhc_B 22 SEVALVTGATSGIGLEIARRLGKEGLRVF--VCARGEEG--LR-----TTLKELRE-AGVEADGRTCDVRSVPEIEALVA 91 (277)
T ss_dssp SCEEEEETCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHH-TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHh-cCCceEEEECCCCCHHHHHHHHH
Confidence 35699999999999999999999999988 44433211 00 01122211 1222 2356778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 92 ~~~~~~g~iD~lv~-~Ag~ 109 (277)
T 2rhc_B 92 AVVERYGPVDVLVN-NAGR 109 (277)
T ss_dssp HHHHHTCSCSEEEE-CCCC
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87766 6888888 5554
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.25 Score=40.24 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ + ++..... . ..+.+.+++...++ ..|...++.+.++++
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~~V~-~-~~r~~~~--~------~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 113 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVSHVI-C-ISRTQKS--C------DSVVDEIKSFGYESSGYAGDVSKKEEISEVIN 113 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEE-E-EESSHHH--H------HHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEE-E-EcCCHHH--H------HHHHHHHHhcCCceeEEECCCCCHHHHHHHHH
Confidence 35699999999999999999999999988 4 4432210 0 11111122112232 346778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 114 ~~~~~~~~id~li~-~Ag~ 131 (285)
T 2c07_A 114 KILTEHKNVDILVN-NAGI 131 (285)
T ss_dssp HHHHHCSCCCEEEE-CCCC
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 87765 6888888 5554
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.035 Score=49.08 Aligned_cols=86 Identities=10% Similarity=0.054 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccC-------------CCCC----------eE--ec--Cccccc--cH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTP-------------KKGG----------TE--HL--GLPVFN--SV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp-------------~~~G----------~~--i~--GvPVy~--Sv 108 (182)
.||.|.|| |+.|+.+.+.+.+. +++|| |--|. ..-| +. ++ .++|+. +.
T Consensus 3 ikV~InGf-GrIGr~v~r~l~~~~~~evv-aInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp 80 (342)
T 2ep7_A 3 IKVGINGF-GRIGRSFFRASWGREEIEIV-AINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDP 80 (342)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTCTTCEEE-EEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCceEE-EEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCCh
Confidence 58999999 99999999988866 59998 64443 0011 11 11 256664 45
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++. .+.++|+++..++.....+.+...+++|.+.|++
T Consensus 81 ~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvi 119 (342)
T 2ep7_A 81 SQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119 (342)
T ss_dssp GGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEE
T ss_pred hhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEe
Confidence 4543 2237999999999999999999999999998876
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.17 Score=41.38 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~e 135 (182)
..++|.|++|-.|+.+++.+.+.|.+|+ .++..... . ..+.+.+++. ++ -+..|...++.+.+++++
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 98 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGAMVI--GTATTEAG--A------EGIGAAFKQAGLEGRGAVLNVNDATAVDALVES 98 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESSHHH--H------HHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHH
Confidence 4688889999999999999999999888 44443211 0 1111111111 22 244577888999999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 99 ~~~~~g~iD~lvn-nAg~ 115 (270)
T 3ftp_A 99 TLKEFGALNVLVN-NAGI 115 (270)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8876 7888888 6554
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.29 Score=38.44 Aligned_cols=80 Identities=15% Similarity=0.015 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc----cCCc-EEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE----TKAN-ASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~----~~~D-vaVdfVpp~av~~a 132 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ .++.... ..++..++ .++. +..|...++.+.++
T Consensus 6 ~k~vlVtGasggiG~~~a~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 72 (251)
T 1zk4_A 6 GKVAIITGGTLGIGLAIATKFVEEGAKVM--ITGRHSD-----------VGEKAAKSVGTPDQIQFFQHDSSDEDGWTKL 72 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHHCCTTTEEEEECCTTCHHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhhccCceEEEECCCCCHHHHHHH
Confidence 35689999999999999999999999988 4443321 11111111 1122 23466778888888
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
++++.+. .+..+|+ ..|+
T Consensus 73 ~~~~~~~~~~id~li~-~Ag~ 92 (251)
T 1zk4_A 73 FDATEKAFGPVSTLVN-NAGI 92 (251)
T ss_dssp HHHHHHHHSSCCEEEE-CCCC
T ss_pred HHHHHHHhCCCCEEEE-CCCC
Confidence 8777655 5888887 5553
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.15 Score=39.76 Aligned_cols=82 Identities=10% Similarity=0.129 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.| .+|+ .++..... . ..+.+. ...++. +..|...++.+.++++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~--~~~r~~~~--~------~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~ 71 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHII--ATARDVEK--A------TELKSI-KDSRVHVLPLTVTCDKSLDTFVS 71 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEE--EEESSGGG--C------HHHHTC-CCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCcEEE--EEecCHHH--H------HHHHhc-cCCceEEEEeecCCHHHHHHHHH
Confidence 3569999999999999999999999 8888 44443211 1 011111 101111 2346667777777777
Q ss_pred HHHHc----CCCEEEEeCCCC
Q 030169 135 EAMEA----ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~----GIk~VV~iTeG~ 151 (182)
+..+. ++..+|+ ..|+
T Consensus 72 ~~~~~~g~~~id~li~-~Ag~ 91 (250)
T 1yo6_A 72 KVGEIVGSDGLSLLIN-NAGV 91 (250)
T ss_dssp HHHHHHGGGCCCEEEE-CCCC
T ss_pred HHHHhcCCCCCcEEEE-CCcc
Confidence 76654 7888888 5554
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.069 Score=44.57 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=49.9
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCc-cccc----c-HHHHHh---ccCCcEEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGL-PVFN----S-VAEAKA---ETKANASV 121 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~Gv-PVy~----S-v~ea~~---~~~~DvaV 121 (182)
.+.+..+|+|.|++|..|..+++.+...|.+++ .++......+. .|. .+++ + .+++.+ ...+|+++
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 214 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLI--GTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVY 214 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEE--EEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE--EEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEE
Confidence 456778899999999999999999999999888 44432210000 111 1121 1 222222 22589999
Q ss_pred EeeChHHHHHHHHHHHHc
Q 030169 122 IYVPPPFAAAAIMEAMEA 139 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~ 139 (182)
+.+.+.... .+..++..
T Consensus 215 ~~~g~~~~~-~~~~~l~~ 231 (327)
T 1qor_A 215 DSVGRDTWE-RSLDCLQR 231 (327)
T ss_dssp ECSCGGGHH-HHHHTEEE
T ss_pred ECCchHHHH-HHHHHhcC
Confidence 999854433 33444444
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.15 Score=40.71 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=54.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~e 135 (182)
++++|.|++|-.|+.+++.+.+.|.+|+ .++..... ++++.++. ++ =+..|.+.++.+.+++++
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 70 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVS--MMGRRYQR-----------LQQQELLLGNAVIGIVADLAHHEDVDVAFAA 70 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCHHH-----------HHHHHHHHGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-----------HHHHHHHhcCCceEEECCCCCHHHHHHHHHH
Confidence 4689999999999999999999999988 44443211 11221111 11 134567788888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 71 ~~~~~g~id~lvn-nAg~ 87 (235)
T 3l6e_A 71 AVEWGGLPELVLH-CAGT 87 (235)
T ss_dssp HHHHHCSCSEEEE-ECCC
T ss_pred HHHhcCCCcEEEE-CCCC
Confidence 8776 6888887 5555
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.26 Score=42.31 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=63.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCC--Ce---Ee------cC----ccccccHHHHHhccCCcEE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKG--GT---EH------LG----LPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~--G~---~i------~G----vPVy~Sv~ea~~~~~~Dva 120 (182)
+.+||+|+|+ |.+|+.++..+...|. +|+ .+|.... .. +. .+ +....+++++.+ ++|++
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~--L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~--~aDiV 82 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRELADVV--LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT--GADCV 82 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEE--EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT--TCSEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEE--EEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC--CCCEE
Confidence 3479999999 9999999998888885 755 6555431 11 00 01 222466887777 89999
Q ss_pred EEee--Ch-------------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030169 121 VIYV--PP-------------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 121 VdfV--pp-------------------~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l 159 (182)
|+.+ |. ....+++++..+.....++++.+. |..-+.++
T Consensus 83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN-P~~~~t~~ 141 (331)
T 1pzg_A 83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN-PLDCMVKV 141 (331)
T ss_dssp EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS-SHHHHHHH
T ss_pred EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC-chHHHHHH
Confidence 9998 52 236677777777776666554433 44444333
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.029 Score=46.02 Aligned_cols=83 Identities=16% Similarity=0.070 Sum_probs=54.6
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eE---ecCccccccHHHHHhccCCcEEEEeeChHHHH---HH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAA---AA 132 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~---~a 132 (182)
+|+|+|+ |.||+.+++.+.+.|.+|+ .+|+.... ++ ..+.. +.+++++ + ++|+++..+|+.... ..
T Consensus 118 ~v~iiG~-G~~g~~~a~~l~~~g~~v~--v~~r~~~~~~~l~~~~~~~-~~~~~~~-~--~~Divi~~tp~~~~~~~~~~ 190 (263)
T 2d5c_A 118 PALVLGA-GGAGRAVAFALREAGLEVW--VWNRTPQRALALAEEFGLR-AVPLEKA-R--EARLLVNATRVGLEDPSASP 190 (263)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSHHHHHHHHHHHTCE-ECCGGGG-G--GCSEEEECSSTTTTCTTCCS
T ss_pred eEEEECC-cHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHHhccc-hhhHhhc-c--CCCEEEEccCCCCCCCCCCC
Confidence 7999998 9999999999998888766 55554311 01 11333 6778887 5 799999999988532 11
Q ss_pred H-HHHHHcCCCEEEEeCCC
Q 030169 133 I-MEAMEAELDLVVCITEG 150 (182)
Q Consensus 133 ~-~eAie~GIk~VV~iTeG 150 (182)
+ .++++.|. .|+-++.+
T Consensus 191 l~~~~l~~g~-~viD~~~~ 208 (263)
T 2d5c_A 191 LPAELFPEEG-AAVDLVYR 208 (263)
T ss_dssp SCGGGSCSSS-EEEESCCS
T ss_pred CCHHHcCCCC-EEEEeecC
Confidence 1 23444444 45454554
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.26 Score=39.49 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=54.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+ ...+ +..|...++.+.+++++
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~ 72 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGFAVA--IADYNDAT--AK-----AVASEINQ-AGGHAVAVKVDVSDRDQVFAAVEQ 72 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHH
Confidence 4689999999999999999999999888 44433211 00 01122111 1122 23467788888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 73 ~~~~~g~id~lv~-nAg~ 89 (256)
T 1geg_A 73 ARKTLGGFDVIVN-NAGV 89 (256)
T ss_dssp HHHHTTCCCEEEE-CCCC
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 8776 6888888 6554
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.15 Score=40.91 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEe--eChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIY--VPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdf--Vpp~av~~a 132 (182)
...++|.|++|-.|+.+++.+.+.|.+|+ .++..... .. ...+++.+.. ++. +.+|. ..++.+.++
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGATVI--LLGRNEEK--LR-----QVASHINEETGRQPQWFILDLLTCTSENCQQL 82 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHHHHSCCCEEEECCTTTCCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHhhcCCCceEEEEecccCCHHHHHHH
Confidence 45689999999999999999999999988 44443211 00 1112221111 221 33455 678888888
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
++++.+. ++..+|+ ..|+
T Consensus 83 ~~~~~~~~g~id~lv~-nAg~ 102 (252)
T 3f1l_A 83 AQRIAVNYPRLDGVLH-NAGL 102 (252)
T ss_dssp HHHHHHHCSCCSEEEE-CCCC
T ss_pred HHHHHHhCCCCCEEEE-CCcc
Confidence 8888876 6888887 6554
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.12 Score=41.72 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc----cCCc-EEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE----TKAN-ASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~----~~~D-vaVdfVpp~av~~a 132 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++.+. .++. +..|.+.++.+.++
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 77 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGYRVV--LIARSKQN--L-----EKVHDEIMRSNKHVQEPIVLPLDITDCTKADTE 77 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTCEEE--EEESCHHH--H-----HHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--H-----HHHHHHHHHhccccCcceEEeccCCCHHHHHHH
Confidence 35689999999999999999999999888 44443211 0 0111222111 1121 33577888999999
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
++++.+. ++..+|+ ..|+
T Consensus 78 ~~~~~~~~g~iD~lvn-nAg~ 97 (250)
T 3nyw_A 78 IKDIHQKYGAVDILVN-AAAM 97 (250)
T ss_dssp HHHHHHHHCCEEEEEE-CCCC
T ss_pred HHHHHHhcCCCCEEEE-CCCc
Confidence 9888876 5777777 6665
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.18 Score=40.98 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=55.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+|+ .++..... . -...+++.+....+ +..|.+.++.+.++++
T Consensus 20 ~k~vlVTGas~gIG~aia~~l~~~G~~V~--~~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 90 (266)
T 4egf_A 20 GKRALITGATKGIGADIARAFAAAGARLV--LSGRDVSE--L-----DAARRALGEQFGTDVHTVAIDLAEPDAPAELAR 90 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 45688999999999999999999999988 44432211 0 01122221211222 3357788888999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 91 ~~~~~~g~id~lv~-nAg~ 108 (266)
T 4egf_A 91 RAAEAFGGLDVLVN-NAGI 108 (266)
T ss_dssp HHHHHHTSCSEEEE-ECCC
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 88876 7888888 5443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 182 | ||||
| d1euca1 | 130 | c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-c | 1e-50 | |
| d1oi7a1 | 121 | c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-c | 3e-50 | |
| d2nu7a1 | 119 | c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-c | 8e-50 |
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 157 bits (398), Expect = 1e-50
Identities = 81/113 (71%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +V GG TP KGG HLGLPV
Sbjct: 2 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLV-GGTTPGKGGKTHLGLPV 60
Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 61 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 113
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Score = 156 bits (395), Expect = 3e-50
Identities = 58/105 (55%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
+ V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV+++V EA
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIV-AGVTPGKGGMEVLGVPVYDTVKEAV 60
Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
A + +AS+I+VP P AA A +EA A + L+V ITEGIP DMV
Sbjct: 61 AHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Score = 154 bits (392), Expect = 8e-50
Identities = 70/105 (66%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
+ +DKNT+VICQG TG GTFH+EQAI YGTKMV GGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREAV 59
Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 60 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 104
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 182 | |||
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 100.0 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 100.0 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 100.0 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 99.82 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 99.78 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 99.75 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 99.7 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 99.64 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 99.63 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 99.54 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 99.15 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 99.07 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.94 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.93 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.92 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.8 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 98.77 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.75 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 98.58 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.58 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.5 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.37 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.35 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.14 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.03 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.92 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.85 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.77 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.74 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.72 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.7 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.69 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.62 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.6 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.55 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.55 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.49 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.46 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.45 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.44 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.38 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.33 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 97.22 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.1 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.08 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 97.05 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 97.04 | |
| d2g0ta1 | 338 | Hypothetical protein TM0796 {Thermotoga maritima [ | 97.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.84 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.81 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 96.81 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 96.78 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 96.76 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.74 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 96.74 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 96.69 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.68 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.64 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.64 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 96.62 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.59 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 96.52 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 96.51 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.49 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 96.46 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.39 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 96.37 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 96.36 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.33 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 96.22 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 96.2 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 96.17 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 96.16 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.06 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.97 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.88 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.84 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.84 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.79 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 95.78 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.71 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.69 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.65 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.63 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.58 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 95.53 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.4 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 95.32 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.31 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.29 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 95.23 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.23 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 95.2 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.18 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.12 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.1 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.09 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.07 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.06 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 95.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.98 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.92 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 94.89 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 94.78 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 94.76 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.7 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 94.58 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.57 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 94.56 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.56 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 94.55 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.54 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 94.53 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 94.52 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 94.29 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.21 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 94.19 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 94.17 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.15 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.15 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.14 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 93.99 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 93.93 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.89 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 93.84 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.73 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.71 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 93.7 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.66 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.54 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.45 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 93.45 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 93.35 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 93.28 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.21 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 93.12 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 93.08 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 93.05 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.03 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.01 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 92.92 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.76 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 92.64 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 92.56 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.54 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 92.53 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.5 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.28 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 92.28 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 92.19 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 92.12 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 92.06 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 91.99 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 91.99 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 91.94 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 91.93 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.93 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 91.91 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.88 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.77 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.76 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 91.69 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 91.5 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.35 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.19 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 91.13 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.02 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 90.95 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.84 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.8 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.78 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 90.68 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 90.64 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 90.58 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 90.51 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.45 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.41 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.19 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 90.09 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 90.08 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.02 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.0 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.92 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.9 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 89.89 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 89.89 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 89.46 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.33 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.27 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 88.75 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 88.73 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 88.52 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 88.5 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 88.4 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 88.37 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 88.25 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.24 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 88.15 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 87.96 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 87.71 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 87.36 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 87.25 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.25 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 87.16 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 86.99 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 86.57 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 86.5 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 86.35 | |
| d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 86.01 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 86.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 85.89 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 85.84 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 85.8 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 85.66 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 85.28 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 85.08 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 84.78 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 84.76 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 84.62 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 84.34 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 84.03 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 83.86 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.83 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 83.75 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 82.88 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 82.7 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 81.94 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 81.66 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 81.59 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 81.33 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 80.88 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 80.42 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 80.21 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 80.01 |
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.6e-38 Score=247.14 Aligned_cols=118 Identities=69% Similarity=1.081 Sum_probs=114.2
Q ss_pred ccCCCCCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEee
Q 030169 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 45 ~~~~~~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
+|++|.|++++++++||+|||+||++|+.+++.|++||++|| |||+|+++|++++|+|||+|++|+.+++++|++++||
T Consensus 2 ~~~~~~~sIli~k~TrVivQGiTG~~G~~ht~~m~~YGT~iV-aGVtPgKgG~~~~giPVf~tV~eA~~~~~~daSvIfV 80 (130)
T d1euca1 2 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLV-GGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYV 80 (130)
T ss_dssp CGGGGGGGGCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECC
T ss_pred CccccceeEEEcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeE-EeeccCCCCccccCccchhhHHHHHHhcCCcEEEEec
Confidence 356999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 125 PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 125 pp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
||.++.|++.||+++||++|||||||+|++||.++.+.+
T Consensus 81 Pp~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~ 119 (130)
T d1euca1 81 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRL 119 (130)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998654
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.9e-36 Score=231.15 Aligned_cols=113 Identities=52% Similarity=0.868 Sum_probs=109.7
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+++|+++||+|||+||++|+.+++.|++||++|| |||+|+++|+++.|+|||+|++|+.+++++|++++||||.++.|+
T Consensus 2 ili~k~trVivQGiTG~~G~~ht~~m~~yGT~iV-aGVtPgkgG~~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dA 80 (121)
T d1oi7a1 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIV-AGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADA 80 (121)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHH
T ss_pred EEecCCCcEEEEcCCCcHHHHHHHHHHHhCCceE-eeeecCCCCcEEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHH
Confidence 5899999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.||+++||++|||||||+|++|+.++.+.+++-
T Consensus 81 i~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~ 114 (121)
T d1oi7a1 81 ALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKAL 114 (121)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988753
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.4e-36 Score=229.41 Aligned_cols=113 Identities=62% Similarity=1.012 Sum_probs=109.7
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+++++++||+|||+||++|+.+++.|++||++|| |||+|+++|+++.|+|||+|++|+++++++|++++||||.++.|+
T Consensus 1 Ili~k~trVlvQGiTG~~G~~ht~~m~~yGT~vV-aGVtPgkgG~~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA 79 (119)
T d2nu7a1 1 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDS 79 (119)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTEEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHH
T ss_pred CeecCCCcEEEEcCCCcHHHHHHHHHHHhCCceE-EEEccCCCCcccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHH
Confidence 4789999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.||+++||++|||||||+|++|+.++.+.+++-
T Consensus 80 ~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~ 113 (119)
T d2nu7a1 80 ILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEA 113 (119)
T ss_dssp HHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998753
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=4.4e-21 Score=151.69 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=99.6
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCC---CeE--------ecCccccccHHHHHhccCCcEEEEe
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKG---GTE--------HLGLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~---G~~--------i~GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
+..+||+|.|++||||+.+++.+.+. +++++ |++++... |++ ..++|++++++++.+ ++|++|||
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv-~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~--~~DViIDF 78 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLG-AALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDF 78 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECC-CEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEecccchhccchhhhhhccccCCceeeccHHHHhc--ccceEEEe
Confidence 35689999999999999999988864 69999 99886542 211 237899999999888 89999999
Q ss_pred eChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc-chh
Q 030169 124 VPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 173 (182)
Q Consensus 124 Vpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~-~~~ 173 (182)
++|+++.++++.|.++|++.|++ |||++++|..+|+++||++||-+ .||
T Consensus 79 s~p~~~~~~~~~a~~~~~~~ViG-TTG~~~~~~~~i~~~a~~ipi~~apN~ 128 (162)
T d1diha1 79 TRPEGTLNHLAFCRQHGKGMVIG-TTGFDEAGKQAIRDAAADIAIVFAANF 128 (162)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEC-CCCCCHHHHHHHHHHTTTSCEEECSCC
T ss_pred ccHHHHHHHHHHHHhccceeEEe-cCCCcHHHHHHHHHHcCCCCEEEEccc
Confidence 99999999999999999999999 99999999999999999999865 565
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=9.3e-20 Score=139.19 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=83.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
+||+|.|++||||+.+.+.+.+.+.+++ +++++.... . ++ ++|++|||++|+.+.++++.|++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~-~~id~~~~~--~------------~~--~~DVvIDFS~p~~~~~~l~~~~~ 63 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELV-LKVDVNGVE--E------------LD--SPDVVIDFSSPEALPKTVDLCKK 63 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-EEEETTEEE--E------------CS--CCSEEEECSCGGGHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEE-EEECCCcHH--H------------hc--cCCEEEEecCHHHHHHHHHHHHh
Confidence 6899999999999999998889999999 998865411 1 23 68999999999999999999999
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 139 AELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 139 ~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+|+|+|++ |||++++|..+|+++||++||
T Consensus 64 ~~~p~ViG-TTG~~~~~~~~i~~~ak~~pv 92 (128)
T d1vm6a3 64 YRAGLVLG-TTALKEEHLQMLRELSKEVPV 92 (128)
T ss_dssp HTCEEEEC-CCSCCHHHHHHHHHHTTTSEE
T ss_pred cCCCEEEE-cCCCCHHHHHHHHHHHhhCCE
Confidence 99999999 999999999999999999997
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=1.3e-18 Score=134.30 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=84.6
Q ss_pred eEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
||+|.|++||||+.+++.+.+ .+++++ |++|++. ++.+.. ..++|++|||+.|+.+.++++.|++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~-~~~d~~~------------~~~~~~-~~~~DvvIDFS~p~~~~~~~~~~~~ 66 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLS-AELDAGD------------PLSLLT-DGNTEVVIDFTHPDVVMGNLEFLID 66 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEE-EEECTTC------------CTHHHH-TTTCSEEEECCCTTTHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEecCC------------chhhhc-cccCCEEEEcccHHHHHHHHHHHHh
Confidence 799999999999999998774 569999 9998753 122222 2379999999999999999999999
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHH---hcccchh-cchh
Q 030169 139 AELDLVVCITEGIPQHDMVINFTR---VNILLVA-FLNF 173 (182)
Q Consensus 139 ~GIk~VV~iTeG~~~eD~~~l~~~---ak~ipv~-~~~~ 173 (182)
+|++.|++ |||++++|.++|+++ ++++||- +.||
T Consensus 67 ~~~~~ViG-TTG~~~~~~~~l~~~~~~~~~ipil~apNf 104 (135)
T d1yl7a1 67 NGIHAVVG-TTGFTAERFQQVESWLVAKPNTSVLIAPNF 104 (135)
T ss_dssp TTCEEEEC-CCCCCHHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred cCCCEEEe-ccccchhHHHHHHHHHHhcCCCCEEEcCCc
Confidence 99999999 999999999999985 8899965 4577
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=1.6e-17 Score=126.47 Aligned_cols=108 Identities=21% Similarity=0.256 Sum_probs=93.4
Q ss_pred eeeecCCceEEEEccC---CCCchhhhHHHHHhC-CceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 52 AVFVDKNTRVICQGIT---GKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 52 ~~li~~~trViVvG~t---GkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
..+|+|. +|+|+|++ |+.|..+.+++++.+ .+|+ +|+|+. +++.|+|+|+|++|+++ .+|.+++++|++
T Consensus 3 ~~lf~Pk-sIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~--pVnP~~--~~i~G~~~y~sl~dlp~--~vDlvvi~vp~~ 75 (129)
T d2csua1 3 DYFFNPK-GIAVIGASNDPKKLGYEVFKNLKEYKKGKVY--PVNIKE--EEVQGVKAYKSVKDIPD--EIDLAIIVVPKR 75 (129)
T ss_dssp CTTTSCS-EEEEETCCSCTTSHHHHHHHHHTTCCSSEEE--EECSSC--SEETTEECBSSTTSCSS--CCSEEEECSCHH
T ss_pred hHhCCCC-eEEEEccCCCCCCcHHHHHHHHHHcCCCcEE--EeccCc--cccCCeEeecchhhcCC--CCceEEEecChH
Confidence 3477775 59999999 888889999988766 7898 999987 57999999999999988 899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHH------HHHHHHHhccc
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHD------MVINFTRVNIL 166 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD------~~~l~~~ak~i 166 (182)
.+.+++++|.+.|++.+|+++.||.+.+ ..+|.++|++-
T Consensus 76 ~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~ 120 (129)
T d2csua1 76 FVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKY 120 (129)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHc
Confidence 9999999999999999999999998742 34566666653
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=1.7e-16 Score=122.31 Aligned_cols=97 Identities=16% Similarity=0.261 Sum_probs=85.7
Q ss_pred eeeecCCceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 52 AVFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 52 ~~li~~~trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.+++++ .+|+|+|++ ++.|..+.+.+++.|++|+ +|+|+. +++.|+|+|++++|+++ .+|++++|+|++.
T Consensus 14 ~~L~~~-ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~--pVnP~~--~~i~G~~~~~sl~dlp~--~iD~v~i~vp~~~ 86 (139)
T d2d59a1 14 EILTRY-KKIALVGASPKPERDANIVMKYLLEHGYDVY--PVNPKY--EEVLGRKCYPSVLDIPD--KIEVVDLFVKPKL 86 (139)
T ss_dssp HHHHHC-CEEEEETCCSCTTSHHHHHHHHHHHTTCEEE--EECTTC--SEETTEECBSSGGGCSS--CCSEEEECSCHHH
T ss_pred HHHhcC-CeEEEEeecCCCCCchHHHHHHHHHCCCEEE--EECCcc--cccCCCcccccccccCc--cceEEEEEeCHHH
Confidence 344444 569999999 8899999999999999999 999987 47999999999999988 8999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHD 155 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD 155 (182)
+.+++++|++.|++.+|..+-++.++-
T Consensus 87 ~~~~~~e~~~~g~k~v~~~~G~~~ee~ 113 (139)
T d2d59a1 87 TMEYVEQAIKKGAKVVWFQYNTYNREA 113 (139)
T ss_dssp HHHHHHHHHHHTCSEEEECTTCCCHHH
T ss_pred HHHHHHHHHHhCCCEEEEeccccCHHH
Confidence 999999999999999998666665543
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.63 E-value=1.1e-15 Score=114.30 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=87.3
Q ss_pred ceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
.+|+|+|++ +|.|..+.+.++++|++|+ +|+|+. +++.|+|+|+|++|+++ .+|++++|+|++.+.+++++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~--pVnP~~--~~i~G~~~y~sl~~lp~--~~D~vvi~vp~~~~~~~l~~ 75 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVL--PVNPNY--DEIEGLKCYRSVRELPK--DVDVIVFVVPPKVGLQVAKE 75 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEE--EECTTC--SEETTEECBSSGGGSCT--TCCEEEECSCHHHHHHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEE--EEcccc--ccccCccccccchhccc--cceEEEEEeCHHHHHHHHHH
Confidence 569999999 8899999999999999999 999986 57999999999999999 89999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 136 AMEAELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 136 Aie~GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
|++.|++.+|. ..|.-.+++.++.+.+.
T Consensus 76 ~~~~g~k~v~~-~~g~~~~~~~~~a~~~g 103 (116)
T d1y81a1 76 AVEAGFKKLWF-QPGAESEEIRRFLEKAG 103 (116)
T ss_dssp HHHTTCCEEEE-CTTSCCHHHHHHHHHHT
T ss_pred HHhcCCceEEe-ccchhhHHHHHHHHHcC
Confidence 99999999987 67776666655544443
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=3e-15 Score=114.41 Aligned_cols=111 Identities=18% Similarity=0.277 Sum_probs=96.9
Q ss_pred eeeecCCceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 52 AVFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 52 ~~li~~~trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.+|+++. +|+|+|++ +|.|..+.+.+++.|++++ .++|+..++++.|+|+|++++|+.+ .+|++++|+|++.
T Consensus 8 ~~L~~pk-sIAVVGaS~~~~k~g~~v~~~L~~~g~~~~--~v~~~~~~~~i~g~~~~~~l~~i~~--~iD~v~v~~p~~~ 82 (136)
T d1iuka_ 8 AYLSQAK-TIAVLGAHKDPSRPAHYVPRYLREQGYRVL--PVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPPSA 82 (136)
T ss_dssp HHHHHCC-EEEEETCCSSTTSHHHHHHHHHHHTTCEEE--EECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCHHH
T ss_pred HHHhCCC-eEEEEeecCCCCCchHHHHHHHhcCCCCce--EEEeccccceeeceecccchhhccC--CCceEEEeccHHH
Confidence 3455664 59999999 8899999999999999988 8999887789999999999999988 8999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+.+++++|++.|++.+|. ..|+..+++.++.+.+..-.|
T Consensus 83 v~~~v~~~~~~g~k~i~~-q~G~~~~e~~~~a~~~Gi~vV 121 (136)
T d1iuka_ 83 LMDHLPEVLALRPGLVWL-QSGIRHPEFEKALKEAGIPVV 121 (136)
T ss_dssp HTTTHHHHHHHCCSCEEE-CTTCCCHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhhCCCeEEE-ecCccCHHHHHHHHHcCCEEE
Confidence 999999999999999987 999998887766666654444
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.15 E-value=2.3e-11 Score=91.06 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=77.5
Q ss_pred cCCceEEEEccCCCCchhhhHHHH-HhCCceEEee--ccCCCCCeEecCcccccc--HHHHHhccCCcEEEEeeChHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAI-EYGTKMVVGG--VTPKKGGTEHLGLPVFNS--VAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~-~~g~~IV~Ag--Vdp~~~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp~av~ 130 (182)
++.+||+|+|| |++|+++++.+. +.+++++ |. -||.+.|+.++|+|||+. +++..+ ..+++++..+|....+
T Consensus 1 ~~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv-~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~-~~i~iai~~i~~~~~~ 77 (126)
T d2dt5a2 1 NRKWGLCIVGM-GRLGSALADYPGFGESFELR-GFFDVDPEKVGRPVRGGVIEHVDLLPQRVP-GRIEIALLTVPREAAQ 77 (126)
T ss_dssp TSCEEEEEECC-SHHHHHHHHCSCCCSSEEEE-EEEESCTTTTTCEETTEEEEEGGGHHHHST-TTCCEEEECSCHHHHH
T ss_pred CCCceEEEEcC-CHHHHHHHHhHhhcCCcEEE-EEEeCchHhcCCEECCEEEecHHHHHHHHh-hcccEEEEeCCHHHHH
Confidence 46789999999 999999998665 4568999 86 568899999999999944 444443 3689999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCC
Q 030169 131 AAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG 150 (182)
++++.+++.||+.|+.++++
T Consensus 78 ~I~d~l~~~gIk~I~~f~~~ 97 (126)
T d2dt5a2 78 KAADLLVAAGIKGILNFAPV 97 (126)
T ss_dssp HHHHHHHHHTCCEEEECSSS
T ss_pred HHHHHHHHcCCCEEeecCce
Confidence 99999999999999987643
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=99.07 E-value=4.4e-11 Score=92.46 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=84.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
+.||.|+|+ |++|+.+.+.+.+. +++++ |.+++...-....+++.+.+.++..+ ++|++++++|+....+.+..|
T Consensus 3 kirvgiiG~-G~ig~~~~~~l~~~~~~elv-av~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvi~tp~~~h~~~a~~a 78 (170)
T d1f06a1 3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLV-GIFSRRATLDTKTPVFDVADVDKHAD--DVDVLFLCMGSATDIPEQAPK 78 (170)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTCSSEEEE-EEEESSSCCSSSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHHHHHHH
T ss_pred cceEEEECC-hHHHHHHHHHHHhCCCcEEE-EEEecccccccccccccchhhhhhcc--ccceEEEeCCCcccHHHHHHH
Confidence 578999998 99999999988864 69999 88887764434456777777777766 899999999999999999999
Q ss_pred HHcCCCEEEEeCC-CCCHHHHHHHHHHhccc
Q 030169 137 MEAELDLVVCITE-GIPQHDMVINFTRVNIL 166 (182)
Q Consensus 137 ie~GIk~VV~iTe-G~~~eD~~~l~~~ak~i 166 (182)
+++|+++|.+-.. .-..++.++|.++||+-
T Consensus 79 L~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~ 109 (170)
T d1f06a1 79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAA 109 (170)
T ss_dssp HTTTSEEECCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHCCCcEEEecCccccCHHHHHHHHHHHHhc
Confidence 9999998765222 23357778899998663
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1.4e-09 Score=82.53 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=83.3
Q ss_pred ceEEEEccCCCCchh-hhHHHHH-hCCceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTF-HTEQAIE-YGTKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~-v~k~~~~-~g~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+||.|+|+ |.+|+. +.+.+.. .+++++ |..|+...-.+ ..++|.|++++++.+ ++|++++.+|+....+.
T Consensus 2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~-~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~D~V~I~tp~~~h~~~ 77 (164)
T d1tlta1 2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQ-GAWSPTRAKALPICESWRIPYADSLSSLAA--SCDAVFVHSSTASHFDV 77 (164)
T ss_dssp EEEEEECC-STHHHHTHHHHHHSCSSEEEE-EEECSSCTTHHHHHHHHTCCBCSSHHHHHT--TCSEEEECSCTTHHHHH
T ss_pred CEEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEEechhHhhhhhhhcccccccccchhhhh--hcccccccccchhcccc
Confidence 68999998 999975 5776664 468999 88888763311 238999999999887 79999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+..|+++|+++++==--..+.+|..+|.+++++-
T Consensus 78 ~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~ 111 (164)
T d1tlta1 78 VSTLLNAGVHVCVDKPLAENLRDAERLVELAARK 111 (164)
T ss_dssp HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred ccccccccceeeccccccCCHHHHHHHHHHHHHc
Confidence 9999999976543211347899999999999763
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.93 E-value=1.6e-09 Score=83.54 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=84.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----Eec----CccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----EHL----GLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
.||.|+|+ |.+|+.+.+.+... +++|+ |-.|+...-. +.. ...+|++++|+++..++|++++.+|+...
T Consensus 2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~-ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h 79 (184)
T d1ydwa1 2 IRIGVMGC-ADIARKVSRAIHLAPNATIS-GVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH 79 (184)
T ss_dssp EEEEEESC-CTTHHHHHHHHHHCTTEEEE-EEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCCCEEE-EEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhh
Confidence 68999998 99999999988764 58998 7667653110 111 34589999999987789999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+.+.+|+++|+++++==--..+.+|..+|.+++++-
T Consensus 80 ~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~ 116 (184)
T d1ydwa1 80 VEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEAN 116 (184)
T ss_dssp HHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTT
T ss_pred cchhhhhhhccceeecccccccCHHHHHHHHHHHHhh
Confidence 9999999999987554322457899999999999764
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.92 E-value=9e-10 Score=85.23 Aligned_cols=108 Identities=11% Similarity=0.015 Sum_probs=85.1
Q ss_pred CceEEEEccCCCCchh-hhHHHHHhC--CceEEeeccCCCCCe-----EecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 58 NTRVICQGITGKNGTF-HTEQAIEYG--TKMVVGGVTPKKGGT-----EHLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~-v~k~~~~~g--~~IV~AgVdp~~~G~-----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
..||.|+|+ |.+|+. +.+.+.+.+ ++|+ |-.|+...-. ......+|++.+|+++..++|++++.+|+...
T Consensus 3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~-~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h 80 (181)
T d1zh8a1 3 KIRLGIVGC-GIAARELHLPALKNLSHLFEIT-AVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN 80 (181)
T ss_dssp CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEE-EEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEE-EEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc
Confidence 478999998 999985 677777643 6888 7777754211 12334589999999987789999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+.+.+|+++|+++++==--+.+.+|..+|.+++++-.
T Consensus 81 ~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~ 118 (181)
T d1zh8a1 81 LPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSE 118 (181)
T ss_dssp HHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCS
T ss_pred ccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhC
Confidence 99999999999766553334689999999999996643
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=1.2e-08 Score=78.01 Aligned_cols=106 Identities=11% Similarity=0.067 Sum_probs=80.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
...||+|+|+ |.+|+.+.+.+.+.. ..++ +..++.. -....+++ +.|++|+++..++|++++.+|+....+.
T Consensus 6 ~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~H~~~ 81 (172)
T d1lc0a1 6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLI-GFVSRRE-LGSLDEVR-QISLEDALRSQEIDVAYICSESSSHEDY 81 (172)
T ss_dssp CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEE-EEECSSC-CCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred CCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEE-eccchHH-HHHhhccC-cCCHHHHHhCCCcchhhhcccccccccc
Confidence 4578999998 999999988776432 3444 3344433 22455565 4579999987789999999999999999
Q ss_pred HHHHHHcCCCEEEE-eCCCCCHHHHHHHHHHhcccc
Q 030169 133 IMEAMEAELDLVVC-ITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 133 ~~eAie~GIk~VV~-iTeG~~~eD~~~l~~~ak~ip 167 (182)
+.+|+++|++ |+| =--..+.+|..+|.++|++-.
T Consensus 82 ~~~al~~gk~-V~~EKP~a~~~~e~~~l~~~a~~~~ 116 (172)
T d1lc0a1 82 IRQFLQAGKH-VLVEYPMTLSFAAAQELWELAAQKG 116 (172)
T ss_dssp HHHHHHTTCE-EEEESCSCSCHHHHHHHHHHHHHTT
T ss_pred cccccccchh-hhcCCCccccHHHHHHHHHHHHHcC
Confidence 9999999976 443 112578999999999986543
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.75 E-value=8.7e-09 Score=82.54 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=87.2
Q ss_pred CCCeeeecCCceEEEEccCCCCchh-hhHHHHHh-CCceEEeeccCCCCCeE----e-----cCccccccHHHHHhccCC
Q 030169 49 SHPAVFVDKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVVGGVTPKKGGTE----H-----LGLPVFNSVAEAKAETKA 117 (182)
Q Consensus 49 ~~~~~li~~~trViVvG~tGkmG~~-v~k~~~~~-g~~IV~AgVdp~~~G~~----i-----~GvPVy~Sv~ea~~~~~~ 117 (182)
.....--++..||.|+|+ |.+|+. +.+.+... +++|+ |-+|+...--+ . ..+..|+|++|+++..++
T Consensus 24 ~~~~~~~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~iv-av~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~i 101 (221)
T d1h6da1 24 AIRPMPEDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIE-ALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKI 101 (221)
T ss_dssp CSSCCCCCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEE-EEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTC
T ss_pred ccCCCCCCCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEE-EEecCCHHHHHHHHHhhccccccccccCchhhhcccccc
Confidence 333445556789999998 999975 45555543 69999 88887531100 1 134579999999987789
Q ss_pred cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 118 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 118 DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
|++++.+|+....+.+.+|+++|+++++==--..+.+|..+|.+++++--
T Consensus 102 D~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~ 151 (221)
T d1h6da1 102 DAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAAN 151 (221)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHT
T ss_pred eeeeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999755432113589999999999997543
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=98.58 E-value=1.2e-07 Score=76.00 Aligned_cols=108 Identities=11% Similarity=0.029 Sum_probs=83.2
Q ss_pred cCCceEEEEccCCC----CchhhhHHHHH--hCCceEEeeccCCCCCe-----E--ecCccccccHHHHHhccCCcEEEE
Q 030169 56 DKNTRVICQGITGK----NGTFHTEQAIE--YGTKMVVGGVTPKKGGT-----E--HLGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 56 ~~~trViVvG~tGk----mG~~v~k~~~~--~g~~IV~AgVdp~~~G~-----~--i~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
.+..||.|+|+ |. +++.+...+.+ .+++|+ |..||...-. + .....+|++.+|+.+..++|++++
T Consensus 14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~iv-av~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i 91 (237)
T d2nvwa1 14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIV-ALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVV 91 (237)
T ss_dssp GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEE-EEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEE
T ss_pred CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEE-EEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeec
Confidence 55689999999 55 44566666664 358999 8788754211 0 234668999999998778999999
Q ss_pred eeChHHHHHHHHHHHHcCC-----CEEEEeC-CCCCHHHHHHHHHHhcc
Q 030169 123 YVPPPFAAAAIMEAMEAEL-----DLVVCIT-EGIPQHDMVINFTRVNI 165 (182)
Q Consensus 123 fVpp~av~~a~~eAie~GI-----k~VV~iT-eG~~~eD~~~l~~~ak~ 165 (182)
.+|+....+.+..|+++|+ +.|+|=- =+.+.+|..+|.++|++
T Consensus 92 ~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~ 140 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQ 140 (237)
T ss_dssp CSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred cCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhh
Confidence 9999999999999999997 5677622 36789999999998843
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.58 E-value=2.5e-08 Score=75.69 Aligned_cols=103 Identities=7% Similarity=0.002 Sum_probs=77.4
Q ss_pred ceEEEEccCCCCchh-hhHHHHHh-CCceEEeeccCCCCCe-E---ecCc-cccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTF-HTEQAIEY-GTKMVVGGVTPKKGGT-E---HLGL-PVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~-v~k~~~~~-g~~IV~AgVdp~~~G~-~---i~Gv-PVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+||.|+|+ |.+|+. +.+.+... +.+++ .+++..... . ..++ ++|++.+|+++ .++|++++.+|+....+
T Consensus 2 irvgiiG~-G~~~~~~~~~~l~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~iD~V~I~tp~~~H~~ 77 (167)
T d1xeaa1 2 LKIAMIGL-GDIAQKAYLPVLAQWPDIELV--LCTRNPKVLGTLATRYRVSATCTDYRDVLQ-YGVDAVMIHAATDVHST 77 (167)
T ss_dssp EEEEEECC-CHHHHHTHHHHHTTSTTEEEE--EECSCHHHHHHHHHHTTCCCCCSSTTGGGG-GCCSEEEECSCGGGHHH
T ss_pred eEEEEEcC-CHHHHHHHHHHHHhCCCcEEE--EEECCHHHHHHHHHhcccccccccHHHhcc-cccceeccccccccccc
Confidence 68999998 999965 56666654 46766 455543111 1 1244 58999999886 37999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.+.+|+++|+++++==-=+.+.+|..+|.+++++
T Consensus 78 ~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~ 111 (167)
T d1xeaa1 78 LAAFFLHLGIPTFVDKPLAASAQECENLYELAEK 111 (167)
T ss_dssp HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred ccccccccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 9999999998854421236889999999999854
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.50 E-value=1.4e-07 Score=70.64 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=78.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
|||.|+|. |.||+.+++.+.+.|++++ ..+....... ..++.+-.+.+|+.+ ++|+++..+|++.+.+++++
T Consensus 1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~diIi~~v~~~~~~~~~~~ 75 (152)
T d1i36a2 1 LRVGFIGF-GEVAQTLASRLRSRGVEVV--TSLEGRSPSTIERARTVGVTETSEEDVY--SCPVVISAVTPGVALGAARR 75 (152)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEE--ECCTTCCHHHHHHHHHHTCEECCHHHHH--TSSEEEECSCGGGHHHHHHH
T ss_pred CEEEEEcH-HHHHHHHHHHHHHCCCeEE--EEcCchhHHHHHhhhcccccccHHHHHh--hcCeEEEEecCchHHHHHHh
Confidence 68999999 9999999999999999988 5555442211 126667888999988 89999999999999999888
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 136 AMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 136 Aie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+...-=+.++- .+-.+.+...++.++.++
T Consensus 76 ~~~~~~~~~id-~st~~p~~~~~l~~~~~~ 104 (152)
T d1i36a2 76 AGRHVRGIYVD-INNISPETVRMASSLIEK 104 (152)
T ss_dssp HHTTCCSEEEE-CSCCCHHHHHHHHHHCSS
T ss_pred hcccCCceeec-cCcCCHHHHHHHHHHHhc
Confidence 77654444444 566667777777777754
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.37 E-value=8.8e-08 Score=72.40 Aligned_cols=97 Identities=12% Similarity=0.225 Sum_probs=75.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
|||.++|+ |+||+.+++.+.+.+.++++..-++.+..+ +..|+.+..+.+|+.+ +.|++++.|+|..+.+++.+.
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~~dvIilavkp~~~~~vl~~l 77 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGIKPQLFETVLKPL 77 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECSCGGGHHHHHTTS
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhh--ccceeeeecchHhHHHHhhhc
Confidence 68999999 999999999999888888834444333211 1238899999999998 899999999999888887653
Q ss_pred HHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 137 MEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 137 ie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
. .-+.|+.++.|++.+++++..
T Consensus 78 -~-~~~~iis~~agi~~~~l~~~l 99 (152)
T d2ahra2 78 -H-FKQPIISMAAGISLQRLATFV 99 (152)
T ss_dssp -C-CCSCEEECCTTCCHHHHHHHH
T ss_pred -c-cceeEecccccccHHHHHhhh
Confidence 3 335577889999998877664
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.35 E-value=3.6e-07 Score=68.64 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=74.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecC-ccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLG-LPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~G-vPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
|||.|+|+ |+||+.+++.+.+.|.+|+ +.|+....-+ ..+ +..+.+..|+.+ ++|++++.+|++...++++
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~--~~d~~~~~~~~a~~~~~~~~~~~~~~~~~--~~DiIilavp~~~~~~vl~ 75 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLI--GVSRQQSTCEKAVERQLVDEAGQDLSLLQ--TAKIIFLCTPIQLILPTLE 75 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTTSCSEEESCGGGGT--TCSEEEECSCHHHHHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEE--EEECCchHHHHHHHhhccceeeeeccccc--ccccccccCcHhhhhhhhh
Confidence 68999999 9999999999999999998 7787642111 112 223334445566 7999999999999999999
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 EAMEA-ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+..+. .-..+|+-+.+........+.++-+.
T Consensus 76 ~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~ 107 (165)
T d2f1ka2 76 KLIPHLSPTAIVTDVASVKTAIAEPASQLWSG 107 (165)
T ss_dssp HHGGGSCTTCEEEECCSCCHHHHHHHHHHSTT
T ss_pred hhhhhcccccceeeccccchHHHHHHHHhhcc
Confidence 98775 34445554677777777777776544
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.14 E-value=2.6e-07 Score=69.26 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=72.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
|||.++|+ |+||+.+++.+.+.| .+|+ ..|+...-. +..|+.++++.+++ . ++|++++.++|..+.+++
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~--v~~r~~~~~~~l~~~~~~~~~~~~~~v-~--~~Div~lavkP~~~~~v~ 74 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY--IANRGAEKRERLEKELGVETSATLPEL-H--SDDVLILAVKPQDMEAAC 74 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEE--EECSSHHHHHHHHHHTCCEEESSCCCC-C--TTSEEEECSCHHHHHHHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEE--EEeCChhHHHHhhhhcccccccccccc-c--ccceEEEecCHHHHHHhH
Confidence 68999999 999999999888777 7777 555544111 12478888888774 4 589999999999988887
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 134 MEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
++... .-+.|+-+..|++.+++.+..
T Consensus 75 ~~l~~-~~~~viS~~ag~~~~~l~~~l 100 (152)
T d1yqga2 75 KNIRT-NGALVLSVAAGLSVGTLSRYL 100 (152)
T ss_dssp TTCCC-TTCEEEECCTTCCHHHHHHHT
T ss_pred HHHhh-cccEEeecccCCCHHHHHHHh
Confidence 77543 346788888999998877654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.03 E-value=7.8e-06 Score=61.44 Aligned_cols=102 Identities=11% Similarity=0.149 Sum_probs=72.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeC-hHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVp-p~av~~a~~ 134 (182)
|||.|+|. |.||+.+++.+.+.|.+++ +.|....-.+ ..+..+..+.+|+.+ ++|+++..+| +.++.+++.
T Consensus 1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~--~~d~~~~~~~~~~~~~~~~~~~~~e~~~--~~d~ii~~v~~~~~v~~v~~ 75 (161)
T d1vpda2 1 MKVGFIGL-GIMGKPMSKNLLKAGYSLV--VSDRNPEAIADVIAAGAETASTAKAIAE--QCDVIITMLPNSPHVKEVAL 75 (161)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeh-hHHHHHHHHHHHHCCCeEE--EEeCCcchhHHHHHhhhhhcccHHHHHh--CCCeEEEEcCCHHHHHHHHh
Confidence 68999999 9999999999999999988 5665431111 247889999999998 7999999997 555555542
Q ss_pred ---HHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 135 ---EAMEA-E-LDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 135 ---eAie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
..+.. . =+.+|-.|| .+.++..++.+..+.-
T Consensus 76 ~~~~~~~~~~~g~iiid~sT-~~p~~~~~~~~~~~~~ 111 (161)
T d1vpda2 76 GENGIIEGAKPGTVLIDMSS-IAPLASREISDALKAK 111 (161)
T ss_dssp STTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHTT
T ss_pred CCcchhhccCCCCEEEECCC-CCHHHHHHHHHHHHHc
Confidence 23332 1 234555444 6667777777666543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.92 E-value=4e-05 Score=56.84 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=66.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--------Ce----------EecCccccccHHHHHhccCCcE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--------GT----------EHLGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--------G~----------~i~GvPVy~Sv~ea~~~~~~Dv 119 (182)
++||+|+|+ |.||..++..|.+.|.++. .+++... +. ......+..+++|+++ ++|+
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~aD~ 75 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVL--AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK--DADV 75 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT--TCSE
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc--CCCE
Confidence 368999999 9999999999999998877 5555310 10 0123445667899988 8999
Q ss_pred EEEeeChHHHHHHHHHHHHc-CCCEEEEeCCCCCHH
Q 030169 120 SVIYVPPPFAAAAIMEAMEA-ELDLVVCITEGIPQH 154 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~-GIk~VV~iTeG~~~e 154 (182)
+++++|+....+++++...+ .-..+|....|..-.
T Consensus 76 iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~ 111 (184)
T d1bg6a2 76 ILIVVPAIHHASIAANIASYISEGQLIILNPGATGG 111 (184)
T ss_dssp EEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSH
T ss_pred EEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCcc
Confidence 99999999999988887765 223344446665443
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.85 E-value=6.2e-06 Score=64.61 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=66.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE---------------------ecCccccccHHHHHhccC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE---------------------HLGLPVFNSVAEAKAETK 116 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~---------------------i~GvPVy~Sv~ea~~~~~ 116 (182)
.||.|.|+ ||.|+.+.+.+.+. ++++| |-.|+...... ..++++...+.++.+ +
T Consensus 2 IKVaINGf-GRIGR~v~Ral~~~~dievV-aInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~--~ 77 (178)
T d1b7go1 2 VNVAVNGY-GTIGKRVADAIIKQPDMKLV-GVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK--T 77 (178)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEE-EEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH--H
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCCEEE-EEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhh--c
Confidence 48999998 99999999988865 49999 65554421110 137888888888877 7
Q ss_pred CcEEEEeeChHHHHHHHHHHHHcCCCEEE
Q 030169 117 ANASVIYVPPPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 117 ~DvaVdfVpp~av~~a~~eAie~GIk~VV 145 (182)
+|++++++|.....+.+...+++|+|.|+
T Consensus 78 vDiViecTG~f~~~e~a~~hl~~G~KvIi 106 (178)
T d1b7go1 78 SDIVVDTTPNGVGAQYKPIYLQLQRNAIF 106 (178)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEECCCCcCCHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999976654
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.77 E-value=6.7e-05 Score=55.15 Aligned_cols=92 Identities=11% Similarity=0.101 Sum_probs=72.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
.||.|+|..|.||+.+++.+.+.|.++. +.|.... ...++..+ ++|.+++.+|+..+.+.+.+...
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~--~~d~~~~----------~~~~~~~~--~~~~v~~~~~~~~~~~v~~~~~~ 75 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGYPIS--ILDREDW----------AVAESILA--NADVVIVSVPINLTLETIERLKP 75 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEE--EECTTCG----------GGHHHHHT--TCSEEEECSCGGGHHHHHHHHGG
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCCCcE--ecccccc----------cccchhhh--hccccccccchhhheeeeecccc
Confidence 5799999779999999999999999888 6666542 23345555 79999999999999999999987
Q ss_pred cC-CCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 139 AE-LDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 139 ~G-Ik~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.- -..+++-++.+..+-..++.+...
T Consensus 76 ~~~~~~iiiD~~Svk~~~~~~~~~~~~ 102 (152)
T d2pv7a2 76 YLTENMLLADLTSVKREPLAKMLEVHT 102 (152)
T ss_dssp GCCTTSEEEECCSCCHHHHHHHHHHCS
T ss_pred cccCCceEEEecccCHHHHHHHHHHcc
Confidence 73 334555577888888888877653
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.74 E-value=2.5e-05 Score=58.65 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=68.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+||+|+|+||--|+++.+.+.+. ..+|. .--.....|+.+. .+++.+.-.+..+ ++|+++...|.....
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~-~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~--~~d~vf~a~p~~~s~ 78 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLH-LLASAESAGQRMGFAESSLRVGDVDSFDFS--SVGLAFFAAAAEVSR 78 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEE-EEECTTTTTCEEEETTEEEECEEGGGCCGG--GCSEEEECSCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEE-EEeecccCCcceeeccccchhccchhhhhc--cceEEEecCCcchhh
Confidence 488999999999999999988643 37888 5556667776653 3333333223233 789999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCH
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQ 153 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~ 153 (182)
+.+..+.++|+++|=. +.-+..
T Consensus 79 ~~~~~~~~~g~~VID~-Ss~fR~ 100 (144)
T d2hjsa1 79 AHAERARAAGCSVIDL-SGALEP 100 (144)
T ss_dssp HHHHHHHHTTCEEEET-TCTTTT
T ss_pred hhccccccCCceEEee-chhhcc
Confidence 9999999999876654 655543
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.72 E-value=1.5e-05 Score=61.97 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=65.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE----------------------ecCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE----------------------HLGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~----------------------i~GvPVy~Sv~ea~~~~ 115 (182)
+||.|.|| ||.|+.+.+.+.+. +++|| +-.|+...... ..++++..++.++.+
T Consensus 3 irIaINGf-GRIGR~v~Ral~~~~dieiV-aINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (172)
T d2czca2 3 VKVGVNGY-GTIGKRVAYAVTKQDDMELI-GITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE-- 78 (172)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEE-EEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--
T ss_pred EEEEEECC-CHHHHHHHHHHHhCCCceEE-EEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc--
Confidence 68999999 99999999988764 49999 65554331110 015666666777666
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 116 KANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 116 ~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++|+++++++.....+.++.-+++|+|.|+.
T Consensus 79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~ 109 (172)
T d2czca2 79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQ 109 (172)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHTCEEEEC
T ss_pred cCCEEEECCCCCCCHHHHHHHHHcCCCEEEE
Confidence 7999999999999999999999999988875
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=6.5e-05 Score=54.78 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=66.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe----------cCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH----------LGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i----------~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
|||+|+|+ |.||+.+...+.+.|.++. .++......+. ....+..+..+..+ ++|++++.+++..
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~iii~vka~~ 75 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQ--GWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLA--TSDLLLVTLKAWQ 75 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHH--TCSEEEECSCGGG
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceE--EEEcCHHHhhhhccccCCccccccccccchhhhhc--ccceEEEeecccc
Confidence 79999999 9999999999999998877 55554422111 12233444555566 7999999999999
Q ss_pred HHHHHHHHHHcC--CCEEEEeCCCCCHHH
Q 030169 129 AAAAIMEAMEAE--LDLVVCITEGIPQHD 155 (182)
Q Consensus 129 v~~a~~eAie~G--Ik~VV~iTeG~~~eD 155 (182)
+.++++.+...- =..|+.+..|+..++
T Consensus 76 ~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~ 104 (167)
T d1ks9a2 76 VSDAVKSLASTLPVTTPILLIHNGMGTIE 104 (167)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred hHHHHHhhccccCcccEEeeccCcccHHH
Confidence 999988887642 233555588997665
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.69 E-value=2.2e-05 Score=61.20 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=70.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeecc-------------CCC-CCeE-ecCccccccHHHHHhccCCcEEEEe
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT-------------PKK-GGTE-HLGLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd-------------p~~-~G~~-i~GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
.||+|+|+ |.||++++..+.+.|-+|..=+-| +.. .+.. ...+.+..+++|+++ +.|++++.
T Consensus 8 ~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~--~ad~iiia 84 (189)
T d1n1ea2 8 NKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN--GAEIILFV 84 (189)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT--TCSCEEEC
T ss_pred ceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccC--CCCEEEEc
Confidence 47999999 999999999988877444300221 211 1111 125667778999998 89999999
Q ss_pred eChHHHHHHHHHH--------HHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 124 VPPPFAAAAIMEA--------MEAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 124 Vpp~av~~a~~eA--------ie~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
||.....+++++. ++.+.+.+.+ |-|+..+....+.+.
T Consensus 85 vPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~-tKGie~~t~~~~sei 130 (189)
T d1n1ea2 85 IPTQFLRGFFEKSGGNLIAYAKEKQVPVLVC-TKGIERSTLKFPAEI 130 (189)
T ss_dssp SCHHHHHHHHHHHCHHHHHHHHHHTCCEEEC-CCSCCTTTCCCHHHH
T ss_pred CcHHHHHHHHHHHHhhhhhhhccCCcEEEEE-ECCCccCCccchhhH
Confidence 9999998888774 4567777776 999865544444443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.62 E-value=0.00011 Score=54.99 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=73.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
+||.++|. |.||..+++.+.+.|.++. +.|....-. ...+..+..++.|+.. .+|++++.+|...+.+.+..
T Consensus 2 ~kIg~IGl-G~MG~~iA~~L~~~g~~v~--~~d~~~~~~~~~~~~~~~~~~~~~e~~~--~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 2 KQIAFIGL-GHMGAPMATNLLKAGYLLN--VFDLVQSAVDGLVAAGASAARSARDAVQ--GADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE--EECSSHHHHHHHHHTTCEECSSHHHHHT--SCSEEEECCSCHHHHHHHHH
T ss_pred CEEEEEEE-HHHHHHHHHHHHHCCCeEE--EEECchhhhhhhhhhhccccchhhhhcc--ccCeeeecccchhhHHHHHh
Confidence 57999998 9999999999999999888 666553111 1247778889999988 79999999998877665532
Q ss_pred ----HHHcC-C-CEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 136 ----AMEAE-L-DLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 136 ----Aie~G-I-k~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+... - +.|+. ++-..+++..++.+..++-
T Consensus 77 ~~~~~~~~l~~g~iiid-~st~~p~~~~~~~~~~~~~ 112 (162)
T d3cuma2 77 DDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARER 112 (162)
T ss_dssp STTCHHHHSCTTCEEEE-CSCCCHHHHHHHHHHHHHT
T ss_pred ccccccccCCCCCEEEE-CCCCCHHHHHHHHHHHHHC
Confidence 22221 2 34554 6667777777777777553
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.60 E-value=0.0001 Score=56.11 Aligned_cols=90 Identities=13% Similarity=0.043 Sum_probs=62.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-C---CceEEeeccCCCCCeEec----CccccccHH-HHHhccCCcEEEEeeChHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-G---TKMVVGGVTPKKGGTEHL----GLPVFNSVA-EAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g---~~IV~AgVdp~~~G~~i~----GvPVy~Sv~-ea~~~~~~DvaVdfVpp~av 129 (182)
+||.|+|+||--|+++.+.+.++ + .+++ .--.....|+... ..+++.... +..+ ++|+++..+|...+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~-~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~--~~DvvF~alp~~~s 77 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPV-FFSTSQIGVPAPNFGKDAGMLHDAFDIESLK--QLDAVITCQGGSYT 77 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEE-EEESSCCSSBCCCSSSCCCBCEETTCHHHHT--TCSEEEECSCHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEE-EeccccccccccccCCcceeeecccchhhhc--cccEEEEecCchHH
Confidence 68999999999999999977642 2 6776 4334444443321 233333322 2234 79999999999999
Q ss_pred HHHHHHHHHcCCCE-EEEeCCCC
Q 030169 130 AAAIMEAMEAELDL-VVCITEGI 151 (182)
Q Consensus 130 ~~a~~eAie~GIk~-VV~iTeG~ 151 (182)
.+.+..+.++|.+. ||=.+.-|
T Consensus 78 ~~~~~~l~~~g~~~~VIDlSsdf 100 (147)
T d1mb4a1 78 EKVYPALRQAGWKGYWIDAASTL 100 (147)
T ss_dssp HHHHHHHHHTTCCSEEEESSSTT
T ss_pred HHHhHHHHHcCCceEEEeCCccc
Confidence 99999999999984 43334433
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00015 Score=55.27 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=62.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCCCe-Eec-------CccccccHHHHHhccCCcEEEEeeCh--
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKGGT-EHL-------GLPVFNSVAEAKAETKANASVIYVPP-- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~G~-~i~-------GvPVy~Sv~ea~~~~~~DvaVdfVpp-- 126 (182)
.+||+|.|+||..|+.+++.+++.|.+|. +.+ +|.+.-. ... ++--.++++++++ ++|+++..+.+
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~-~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~--~~d~vi~~~g~~~ 79 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVT-VLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRN 79 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEE-EEEcChhhcccccccccccccccccchhhHHHHhc--CCCEEEEEeccCC
Confidence 46899999999999999999999999988 543 3332110 011 3333344667777 78998887643
Q ss_pred ---------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 ---------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ---------~av~~a~~eAie~GIk~VV~iT 148 (182)
..+..+++.+.++|++.+|.++
T Consensus 80 ~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~s 110 (205)
T d1hdoa_ 80 DLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110 (205)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred chhhhhhhHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3456677888888999988765
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.00013 Score=55.11 Aligned_cols=84 Identities=14% Similarity=0.020 Sum_probs=59.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-C---CceEEeeccCCCCCeEec----CccccccHH-HHHhccCCcEEEEeeChHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-G---TKMVVGGVTPKKGGTEHL----GLPVFNSVA-EAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g---~~IV~AgVdp~~~G~~i~----GvPVy~Sv~-ea~~~~~~DvaVdfVpp~av 129 (182)
.||+|+|+||--|+.+.+.+++. . .+++ +.-.....|+... .+++....+ +..+ ++|+++..+|.+.+
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~-~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~--~~DivF~a~~~~~s 78 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPV-FFSTSQLGQAAPSFGGTTGTLQDAFDLEALK--ALDIIVTCQGGDYT 78 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEE-EEESSSTTSBCCGGGTCCCBCEETTCHHHHH--TCSEEEECSCHHHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEE-EeeccccccccccccCCceeeecccchhhhh--cCcEEEEecCchHH
Confidence 37999999999999999866643 2 6677 5444444443321 334443322 2234 79999999999999
Q ss_pred HHHHHHHHHcCCCEEE
Q 030169 130 AAAIMEAMEAELDLVV 145 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV 145 (182)
.+.+.++.++|.+.+|
T Consensus 79 ~~~~~~~~~~g~~~~V 94 (146)
T d1t4ba1 79 NEIYPKLRESGWQGYW 94 (146)
T ss_dssp HHHHHHHHHTTCCCEE
T ss_pred HHhhHHHHhcCCCeec
Confidence 9999999999987444
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.49 E-value=5.1e-05 Score=60.22 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=74.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
++.+|+|+|. |.+|++++.+|.+.|.+|+ -|+-++...- +..|+.|+ +++|+.+ ..|++++.+|-+.-.++-
T Consensus 15 k~k~IaViGY-GsQG~AhAlNLrDSG~~V~-VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~--~aDiim~L~PD~~q~~vy 89 (182)
T d1np3a2 15 QGKKVAIIGY-GSQGHAHACNLKDSGVDVT-VGLRSGSATVAKAEAHGLKVA-DVKTAVA--AADVVMILTPDEFQGRLY 89 (182)
T ss_dssp HTSCEEEECC-SHHHHHHHHHHHHTTCCEE-EECCTTCHHHHHHHHTTCEEE-CHHHHHH--TCSEEEECSCHHHHHHHH
T ss_pred CCCEEEEEee-CcHhHHHHhhhhhcCCCEE-EEcCCCCccHHHHhhhccccc-cHHHHhh--hcCeeeeecchHHHHHHH
Confidence 4577999999 9999999999999999999 6776653110 13588885 5788888 799999999988777888
Q ss_pred HHHHHcCCCE--EEEeCCCCCHHH
Q 030169 134 MEAMEAELDL--VVCITEGIPQHD 155 (182)
Q Consensus 134 ~eAie~GIk~--VV~iTeG~~~eD 155 (182)
++-++-..+. .++++-||..|-
T Consensus 90 ~~~I~p~lk~g~~L~FaHGfnIh~ 113 (182)
T d1np3a2 90 KEEIEPNLKKGATLAFAHGFSIHY 113 (182)
T ss_dssp HHHTGGGCCTTCEEEESCCHHHHT
T ss_pred HHhhhhhcCCCcEEEEeccceEEe
Confidence 7888765554 777899998774
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.46 E-value=7.3e-05 Score=54.39 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=70.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--------Eec--CccccccHHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--------EHL--GLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--------~i~--GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
..+|+|+|+ |.||+.+++.+.+.|.+|++..-+..+... ... +.......++.+. ..|+.+..+|..
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~i~~~~~~ 78 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPYT 78 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECSCGG
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhh--ccceeEeeccch
Confidence 468999999 999999999999999888844433332111 011 1111122444444 789999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.....+..+.+.+.+.+ +.....+++..+.+.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 113 (182)
T d1e5qa1 79 FHATVIKSAIRQKKHVV---TTSYVSPAMMELDQAAKD 113 (182)
T ss_dssp GHHHHHHHHHHHTCEEE---CSSCCCHHHHHTHHHHHH
T ss_pred hhhHHHHHHHhhcccee---ecccCcHHHHHHHHHhcc
Confidence 99999999999987754 444556677777777654
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.45 E-value=5.3e-05 Score=58.70 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE---------e-------------cCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE---------H-------------LGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~---------i-------------~GvPVy~Sv~ea~~~~ 115 (182)
.||.|-|+ ||.|+.+.+.+.+.+ +++| +--++...... + .++++..+..++.+
T Consensus 2 ~~VgINGf-GRIGR~v~R~l~~~~di~vv-aInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-- 77 (171)
T d1cf2o1 2 KAVAINGY-GTVGKRVADAIAQQDDMKVI-GVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD-- 77 (171)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTSSSEEEE-EEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--
T ss_pred eEEEEEcC-cHHHHHHHHHHHhCCCceEE-EEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc--
Confidence 58999999 999999999887655 8898 64443321110 0 15666666677666
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEE
Q 030169 116 KANASVIYVPPPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 116 ~~DvaVdfVpp~av~~a~~eAie~GIk~VV 145 (182)
++|++++.+|.....+.++.-+++|+|.|+
T Consensus 78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~vi 107 (171)
T d1cf2o1 78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIF 107 (171)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEccCCCCCHHHHHHHHHcCCCEEE
Confidence 799999999999999999999999987554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.44 E-value=0.00014 Score=53.92 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=68.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeE---ecCc--cccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTE---HLGL--PVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~---i~Gv--PVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+|.|+|+ |.||..+++.+.+.| .+|+ |+|+...-.+ ..++ .+..+.++... .++|++++.+|+..+.++
T Consensus 3 ~I~IIG~-G~mG~sla~~L~~~g~~~~I~--~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~dlIila~p~~~~~~v 78 (171)
T d2g5ca2 3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIY--GYDINPESISKAVDLGIIDEGTTSIAKVED-FSPDFVMLSSPVRTFREI 78 (171)
T ss_dssp EEEEESC-SHHHHHHHHHHHHTTCCSEEE--EECSCHHHHHHHHHTTSCSEEESCGGGGGG-TCCSEEEECSCHHHHHHH
T ss_pred EEEEEcc-CHHHHHHHHHHHhcCCCeEEE--EEECChHHHHHHHHhhcchhhhhhhhhhhc-cccccccccCCchhhhhh
Confidence 5999998 999999999999888 4677 8888752211 1133 23344444322 278999999999999999
Q ss_pred HHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 133 IMEAMEA-ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 133 ~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
+++.... ....++.-+.+....-...+.+.
T Consensus 79 l~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~ 109 (171)
T d2g5ca2 79 AKKLSYILSEDATVTDQGSVKGKLVYDLENI 109 (171)
T ss_dssp HHHHHHHSCTTCEEEECCSCCTHHHHHHHHH
T ss_pred hhhhhccccccccccccccccHHHHHHHHHh
Confidence 9887765 45556655666655555555543
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.38 E-value=7.3e-05 Score=57.17 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEee--ccC-------------CCCCeEec--CccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGG--VTP-------------KKGGTEHL--GLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~Ag--Vdp-------------~~~G~~i~--GvPVy~Sv~ea~~~~~~DvaV 121 (182)
|||.|+|+ |.||++++..+.+.|-+|..=+ .++ .... ... .+-..++++++.+ ++|+++
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~--~ad~Ii 76 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGV-KLNGVEIFWPEQLEKCLE--NAEVVL 76 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTB-CCCSEEEECGGGHHHHHT--TCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcc-hhccccccccccHHHHHh--ccchhh
Confidence 68999999 9999999999988875554112 121 1100 111 1233466888888 899999
Q ss_pred EeeChHHHHHHHHHHHHc-CCCEEEEeCCCCC
Q 030169 122 IYVPPPFAAAAIMEAMEA-ELDLVVCITEGIP 152 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~-GIk~VV~iTeG~~ 152 (182)
+.||+....+++++.... .-+.++..|.|+-
T Consensus 77 ~avps~~~~~~~~~l~~~l~~~~ii~~tkg~~ 108 (180)
T d1txga2 77 LGVSTDGVLPVMSRILPYLKDQYIVLISKGLI 108 (180)
T ss_dssp ECSCGGGHHHHHHHHTTTCCSCEEEECCCSEE
T ss_pred cccchhhhHHHHHhhccccccceecccccCcc
Confidence 999999999999997765 3445666688873
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.33 E-value=9.7e-05 Score=56.31 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=61.7
Q ss_pred cCCceEEEEccCCCCchhh-hHHHHHhC-CceEEeeccCCCCCe-----EecCcccccc-HHHHHhc---cCCcEEEEee
Q 030169 56 DKNTRVICQGITGKNGTFH-TEQAIEYG-TKMVVGGVTPKKGGT-----EHLGLPVFNS-VAEAKAE---TKANASVIYV 124 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v-~k~~~~~g-~~IV~AgVdp~~~G~-----~i~GvPVy~S-v~ea~~~---~~~DvaVdfV 124 (182)
++..||.|+| +|..|+.. .+.+.... ++++ +-.+....+. +..|+|++.. ++++.+. .++|++++.+
T Consensus 2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~-avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMG-AMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEE-EEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEE-EEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcC
Confidence 4568999999 69999864 56655443 7887 6655544332 1358998776 6555442 2689999999
Q ss_pred ChHHHHH--HHHHHHHcCCCEEEE
Q 030169 125 PPPFAAA--AIMEAMEAELDLVVC 146 (182)
Q Consensus 125 pp~av~~--a~~eAie~GIk~VV~ 146 (182)
|+....+ -+..+.++|+.+|-.
T Consensus 80 pag~h~~~~~~~~aa~~G~~VID~ 103 (157)
T d1nvmb1 80 SASAHVQNEALLRQAKPGIRLIDL 103 (157)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred CchhHHHhHHHHHHHHcCCEEEEc
Confidence 9877655 446678889888766
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.22 E-value=0.00023 Score=53.77 Aligned_cols=105 Identities=9% Similarity=0.009 Sum_probs=65.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------ecCccccccHHHHHhc-cCCcEEEEeeChH-H
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------HLGLPVFNSVAEAKAE-TKANASVIYVPPP-F 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------i~GvPVy~Sv~ea~~~-~~~DvaVdfVpp~-a 128 (182)
.+|.++|. |.||..+++.+.+.|++++ +.|.....-+ ........++++..+. ..+|.++..+|.. .
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~--v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~ 79 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHGFVVC--AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHH
Confidence 46999999 9999999999999999998 6665431100 0112233344444332 2789998888885 4
Q ss_pred HHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 129 AAAAIMEAMEAE-LDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 129 v~~a~~eAie~G-Ik~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.++.+..+..- ...+|+-++-...++..++.+..++.
T Consensus 80 v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~ 118 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDK 118 (176)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhc
Confidence 455555555442 22244446666777777776665544
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.10 E-value=0.00043 Score=52.74 Aligned_cols=98 Identities=10% Similarity=0.064 Sum_probs=68.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeec---cCCCCCeEec----------Ccccc--ccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGV---TPKKGGTEHL----------GLPVF--NSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgV---dp~~~G~~i~----------GvPVy--~Sv~ea~~~~~~DvaVd 122 (182)
+||+|+|+||--|+++.+.+.+. .++|. .-. ..+..|+.+. ..++. ....+... ++|+++.
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~-~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dvvf~ 78 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTIT-ALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSA--DVDVVFL 78 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEE-EEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCT--TCCEEEE
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceE-eeEeecccccccccccccccccccccccccccchhhhhhhc--ccceeec
Confidence 68999999999999999999875 58876 321 2233454321 11111 11222222 7899999
Q ss_pred eeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 123 YVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 123 fVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
..|+....+.+..+.+.|++.|=. +..+..+|.....
T Consensus 79 alp~~~s~~~~~~~~~~~~~vIDl-SadfRl~~~~~~~ 115 (179)
T d2g17a1 79 ATAHEVSHDLAPQFLQAGCVVFDL-SGAFRVNDRAFYE 115 (179)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEC-SSTTSSSCHHHHH
T ss_pred cccchhHHHHhhhhhhcCceeecc-ccccccccccccc
Confidence 999999999999999999888765 7766665554443
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.08 E-value=0.00048 Score=53.28 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=52.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
..+|.|+|+ |+.|+.+++.+..+|++|. +.||.... .....+.+++|+.+ ++|++++.+|-.
T Consensus 42 gk~vgIiG~-G~IG~~va~~l~~~g~~v~--~~d~~~~~---~~~~~~~~l~ell~--~sDiv~~~~pl~ 103 (181)
T d1qp8a1 42 GEKVAVLGL-GEIGTRVGKILAALGAQVR--GFSRTPKE---GPWRFTNSLEEALR--EARAAVCALPLN 103 (181)
T ss_dssp TCEEEEESC-STHHHHHHHHHHHTTCEEE--EECSSCCC---SSSCCBSCSHHHHT--TCSEEEECCCCS
T ss_pred CceEEEecc-ccccccceeeeeccccccc--cccccccc---cceeeeechhhhhh--ccchhhcccccc
Confidence 467999999 9999999999999999999 88887632 34566789999999 899999999864
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.05 E-value=0.00082 Score=54.47 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=60.1
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----------ecCccccccHHHHHhccCCcEEEEee
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----------HLGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----------i~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
..++|||+|.|++|-.|+.+++.+++.|.+|+ ++|....... ..++.-...+.++.+ ++|+++.+.
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~--~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih~a 87 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGHYVI--ASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLA 87 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEE--EEeCCCccchhhhcccCcEEEeechhHHHHHHHhh--cCCeEeecc
Confidence 45799999999999999999999999999998 4443322211 112322333444444 789888755
Q ss_pred ChH-------------------HHHHHHHHHHHcCCCEEEEeC
Q 030169 125 PPP-------------------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 125 pp~-------------------av~~a~~eAie~GIk~VV~iT 148 (182)
... ....+++.|.++|++.+|.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~S 130 (363)
T d2c5aa1 88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 130 (363)
T ss_dssp CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred cccccccccccccccccccccchhhHHHHhHHhhCcccccccc
Confidence 111 134567788899999877544
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.04 E-value=0.00027 Score=52.99 Aligned_cols=91 Identities=16% Similarity=0.087 Sum_probs=67.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
||+|+|+||--|+++.+.+.+.. .++. ..-+.+..|+.+. .++++...++... +.|+++...|+..+.+.
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~-~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~--~~d~~f~~~~~~~s~~~ 79 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIR-YLASARSAGKSLKFKDQDITIEETTETAFE--GVDIALFSAGSSTSAKY 79 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEE-EEECGGGTTCEEEETTEEEEEEECCTTTTT--TCSEEEECSCHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEE-EecccccccccccccCCcccccccchhhhh--hhhhhhhccCccchhhH
Confidence 79999999999999999998764 4444 3345555565442 3444444444444 78999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHH
Q 030169 133 IMEAMEAELDLVVCITEGIPQH 154 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~e 154 (182)
+.++.+.|+++|=. +.-|..+
T Consensus 80 ~~~~~~~~~~VIDl-SsdfR~~ 100 (154)
T d2gz1a1 80 APYAVKAGVVVVDN-TSYFRQN 100 (154)
T ss_dssp HHHHHHTTCEEEEC-SSTTTTC
T ss_pred Hhhhccccceehhc-Chhhhcc
Confidence 99999999988865 6555443
|
| >d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein TM0796 species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.0021 Score=54.91 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=75.8
Q ss_pred eecCCceEEEEccCCCCchhhhH---HHHHhC-CceEEeeccCCCCCeEe--------cCccccccHHHHHhccCCcEEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTE---QAIEYG-TKMVVGGVTPKKGGTEH--------LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k---~~~~~g-~~IV~AgVdp~~~G~~i--------~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
+++++++++|. +-|.++....| .++.|. -.++ +.|+....|+.. .++|||.|++|+.+. ++|+.|
T Consensus 6 m~~p~~~a~Il-~~g~~~~~~gKTa~gLlRy~~~~~v-~~V~~~~aG~~~~~~l~g~~~~IPIv~s~~~A~~~-g~~~li 82 (338)
T d2g0ta1 6 LYQPGTPAAIV-AWGQLGTAHAKTTYGLLRHSRLFKP-VCVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLI 82 (338)
T ss_dssp HSCTTEEEEEE-CTTTTTSGGGHHHHHHHHHCSSEEE-EEEESSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCEEE
T ss_pred hcCCCCCEEEE-eCCCcCCCCchHhhhHHhccCCCeE-EEEECCCCCCchhhhcCCCCCCCCEeCCHHHHHhc-CCCEEE
Confidence 56788888887 33667666655 555675 3344 566667777642 289999999999874 799999
Q ss_pred EeeCh------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 122 IYVPP------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 122 dfVpp------~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+-+-| +.-.+.+.+|+++|...|-+. |....|-.++.++|++
T Consensus 83 iGvAp~GG~lp~~w~~~i~~Al~~Gl~IvsGL--H~~L~ddpel~~~A~~ 130 (338)
T d2g0ta1 83 IGVSNPGGYLEEQIATLVKKALSLGMDVISGL--HFKISQQTEFLKIAHE 130 (338)
T ss_dssp ECCCSCCHHHHHHHHHHHHHHHHTTCEEEECC--CC--CCHHHHHHHHHH
T ss_pred EEecccCCcCCHHHHHHHHHHHHcCCeEEecc--hhhhccCHHHHHHHHh
Confidence 98764 455688999999999988764 4455666666666643
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.00057 Score=55.25 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-----------------ecCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-----------------HLGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-----------------i~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
|||+|.|++|-.|+.+++.+++.|.+|+ ++|.-..+.. ..++-=++.++++.+..+||+++
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVI--ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEE--EEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 6899999999999999999999999998 5543111100 01333344577777777899988
Q ss_pred Eee-----C-----hHH--------HHHHHHHHHHcCCCEEEEeC
Q 030169 122 IYV-----P-----PPF--------AAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 122 dfV-----p-----p~a--------v~~a~~eAie~GIk~VV~iT 148 (182)
-+- + |.. +..+++.|.+.+++.+|.++
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~S 123 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSS 123 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecC
Confidence 652 1 112 22467777788999877645
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.81 E-value=0.00081 Score=50.31 Aligned_cols=107 Identities=18% Similarity=0.114 Sum_probs=66.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-----------ecCccccccHHHHHhcc-CCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-----------HLGLPVFNSVAEAKAET-KANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-----------i~GvPVy~Sv~ea~~~~-~~DvaVdfVp 125 (182)
.|||.|+|. |+||..+++.+.+.|.++. +.|+...-.+ ........+.+++.... +++...+.++
T Consensus 1 ~MkIGvIGl-G~MG~~ma~~L~~~G~~V~--~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (178)
T d1pgja2 1 SMDVGVVGL-GVMGANLALNIAEKGFKVA--VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQ 77 (178)
T ss_dssp CBSEEEECC-SHHHHHHHHHHHHTTCCEE--EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCC
T ss_pred CCEEEEEee-hHHHHHHHHHHHHCCCeEE--EEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeec
Confidence 378999999 9999999999999999988 6776431110 11234455566665432 5666666666
Q ss_pred hHHHH-HHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 126 PPFAA-AAIMEAMEAELD--LVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 126 p~av~-~a~~eAie~GIk--~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
+..+. ..+......-.+ .++. ++-...++..++.+..+.-.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~iii~-~st~~~~~~~~~~~~l~~~~~ 122 (178)
T d1pgja2 78 AGAATDSTIEQLKKVFEKGDILVD-TGNAHFKDQGRRAQQLEAAGL 122 (178)
T ss_dssp CSHHHHHHHHHHHHHCCTTCEEEE-CCCCCHHHHHHHHHHHHTTTC
T ss_pred Ccchhhhhhhhhhhhccccceecc-cCccchhHHHHHHHHHhhcce
Confidence 65444 454555444322 4555 555666666666665544444
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=96.81 E-value=0.00055 Score=53.54 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.+|.|+|+ |+.|+.+++.+..+|++++ +.||.........+ -+.+++++.+ .+|++++.+|-..
T Consensus 46 ktvgIiG~-G~IG~~va~~l~~fg~~v~--~~d~~~~~~~~~~~-~~~~l~~l~~--~~D~v~~~~plt~ 109 (199)
T d1dxya1 46 QTVGVMGT-GHIGQVAIKLFKGFGAKVI--AYDPYPMKGDHPDF-DYVSLEDLFK--QSDVIDLHVPGIE 109 (199)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCSSCCTTC-EECCHHHHHH--HCSEEEECCCCCG
T ss_pred eeeeeeec-ccccccccccccccceeee--ccCCccchhhhcch-hHHHHHHHHH--hcccceeeecccc
Confidence 56999999 9999999999999999999 88887644333333 3568999988 7999999988643
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.78 E-value=0.00035 Score=53.93 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=48.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
+|||+|.|++|-.|+.+++.+.+.|.+|+ +++.... ++-=+.+++++++..++|+++-+.
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi--~~~r~~~-----D~~d~~~~~~~l~~~~~d~vih~a 60 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNVEVI--PTDVQDL-----DITNVLAVNKFFNEKKPNVVINCA 60 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEE--EECTTTC-----CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEE--Eeechhc-----cCCCHHHHHHHHHHcCCCEEEeec
Confidence 58999999999999999999999999999 7777652 222345577888777899988765
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.0018 Score=51.08 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=60.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEee-----------Ch
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV-----------PP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfV-----------pp 126 (182)
..||+|.|++|-.|+.+++.+++.|-.++ ...+... .++.-...+.++.+..++|.++... ++
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi-~~~~~~~-----~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~ 75 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVEL-VLRTRDE-----LNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 75 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEE-ECCCTTT-----CCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEE-EecCchh-----ccccCHHHHHHHHhhcCCCEEEEcchhccccccchhhH
Confidence 36899999999999999999999987666 3333322 2345556677877767899988754 22
Q ss_pred H--------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 P--------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ~--------av~~a~~eAie~GIk~VV~iTe 149 (182)
. ....+++.|.+++++.+|.+++
T Consensus 76 ~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS 106 (315)
T d1e6ua_ 76 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 106 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 2 1234567777889987665453
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.74 E-value=0.00035 Score=54.91 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe-cCccccccHHHHHhccCCcEEEEeeChHHH-HHHH-H
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH-LGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAI-M 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i-~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av-~~a~-~ 134 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ ++||....... .++ -+.+++|++. +.|++++.+|-..- ...+ +
T Consensus 43 gk~vgIiG~-G~IG~~va~~l~~fg~~V~--~~d~~~~~~~~~~~~-~~~~l~~~l~--~sDii~~~~plt~~T~~li~~ 116 (197)
T d1j4aa1 43 DQVVGVVGT-GHIGQVFMQIMEGFGAKVI--TYDIFRNPELEKKGY-YVDSLDDLYK--QADVISLHVPDVPANVHMIND 116 (197)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCHHHHHTTC-BCSCHHHHHH--HCSEEEECSCCCGGGTTCBSH
T ss_pred CCeEEEecc-cccchhHHHhHhhhccccc--ccCccccccccccee-eecccccccc--ccccccccCCccccccccccH
Confidence 457999999 9999999999999999999 78887643222 233 3467999998 79999999985332 2222 2
Q ss_pred HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 135 EAMEA-EL-DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 135 eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+.++. .- ..+|+++-|= .-|...|.++-+
T Consensus 117 ~~l~~mk~~a~lIN~sRG~-ivde~aL~~aL~ 147 (197)
T d1j4aa1 117 ESIAKMKQDVVIVNVSRGP-LVDTDAVIRGLD 147 (197)
T ss_dssp HHHHHSCTTEEEEECSCGG-GBCHHHHHHHHH
T ss_pred HHHhhhCCccEEEecCchh-hhhhHHHHHHHh
Confidence 33332 22 4567744443 334444444443
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=96.74 E-value=0.0012 Score=51.86 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=59.2
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeecc-CCCCCe-------------E--ecCccccccHHHHHhccCCcEEEEe
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVT-PKKGGT-------------E--HLGLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd-p~~~G~-------------~--i~GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
||+|.|++|-.|+.+++.+++.|.+|+ + +| ....+. + ..++--.++++++.+.+++|+++-+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~-~-id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~ 79 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLI-V-FDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 79 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEE-E-EECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEE-E-EECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence 799999999999999999999999998 4 54 221111 0 1234334457777777789999876
Q ss_pred eCh----------H--------HHHHHHHHHHHcCCCEEEEeC
Q 030169 124 VPP----------P--------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 124 Vpp----------~--------av~~a~~eAie~GIk~VV~iT 148 (182)
.-. . ....+++.|.+.+++..+.++
T Consensus 80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~s 122 (338)
T d1orra_ 80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYS 122 (338)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cccccccccccChHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 421 1 223456778888887655544
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.69 E-value=0.0023 Score=51.96 Aligned_cols=96 Identities=8% Similarity=0.089 Sum_probs=70.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC------CceEEeeccCCCCCe---EecCccccc----cHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG------TKMVVGGVTPKKGGT---EHLGLPVFN----SVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g------~~IV~AgVdp~~~G~---~i~GvPVy~----Sv~ea~~~~~~DvaVdfV 124 (182)
..+|+|+|. |.+|++++.+|.+.| .+++ -|+.++..-- +..|+.+.+ +++|+.+ ..|++++.+
T Consensus 44 ~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~-VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~--~ADiVmiLl 119 (226)
T d1qmga2 44 IKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVK-IGLRKGSNSFAEARAAGFSEENGTLGDMWETIS--GSDLVLLLI 119 (226)
T ss_dssp CSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEE-EEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHH--TCSEEEECS
T ss_pred CCEEEEEEe-ccHHHHHHHhChhhcccccCCceEE-EEeCCCChhHHHHHHcCCccCCCcccCHHHHHh--hCCEEEEec
Confidence 367999999 999999999999955 5566 5666653111 124777543 6888888 899999999
Q ss_pred ChHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHH
Q 030169 125 PPPFAAAAIMEAMEAELD--LVVCITEGIPQHDMVI 158 (182)
Q Consensus 125 pp~av~~a~~eAie~GIk--~VV~iTeG~~~eD~~~ 158 (182)
|-+.-.++-++ ++..++ ..++++-||..+....
T Consensus 120 PDe~Q~~vy~~-I~p~Lk~G~~L~FaHGFnI~~~~~ 154 (226)
T d1qmga2 120 SDSAQADNYEK-VFSHMKPNSILGLSHGFLLGHLQS 154 (226)
T ss_dssp CHHHHHHHHHH-HHHHSCTTCEEEESSSHHHHHHHH
T ss_pred chHHHHHHHHH-HHHhcCCCceeeecchhhhhhcee
Confidence 98888888875 544333 3777899998865543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.68 E-value=0.0051 Score=43.82 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=57.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--Ce--EecCccccc-c------HHHH-HhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--GT--EHLGLPVFN-S------VAEA-KAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--G~--~i~GvPVy~-S------v~ea-~~~~~~DvaVdfVpp 126 (182)
|||+|+|+ |++|+.+++.+.+.|.+++ .||.... .+ +..+++++. + ++++ ++ ++|..+..++.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~--vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~--~a~~vv~~t~~ 75 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIV--LIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIE--DADMYIAVTGK 75 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTT--TCSEEEECCSC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcc--eecCChhhhhhhhhhhhhhhccCcccchhhhhhcChh--hhhhhcccCCc
Confidence 68999999 9999999999999998888 6654331 10 112555542 2 3333 22 78999988877
Q ss_pred HHHH-HHHHHHHHcCCCEEEEeCC
Q 030169 127 PFAA-AAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ~av~-~a~~eAie~GIk~VV~iTe 149 (182)
+... -++..+-+.|.+.+++.+.
T Consensus 76 d~~N~~~~~~~k~~~~~~iI~~~~ 99 (132)
T d1lssa_ 76 EEVNLMSSLLAKSYGINKTIARIS 99 (132)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECS
T ss_pred HHHHHHHHHHHHHcCCceEEEEec
Confidence 6544 3344555668888887554
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.64 E-value=0.0006 Score=53.30 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=66.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHHHH-HHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAA-AAI- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~-~a~- 133 (182)
..+|.|+|+ |+.|+.+++.+..+|++|. +.||...... ..++.-+.+++|+.+ ..|++++.+|-..-. ..+
T Consensus 49 gktvgIiG~-G~IG~~va~~l~~fg~~v~--~~d~~~~~~~~~~~~~~~~~~l~~ll~--~sD~i~~~~plt~~T~~li~ 123 (193)
T d1mx3a1 49 GETLGIIGL-GRVGQAVALRAKAFGFNVL--FYDPYLSDGVERALGLQRVSTLQDLLF--HSDCVTLHCGLNEHNHHLIN 123 (193)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE--EECTTSCTTHHHHHTCEECSSHHHHHH--HCSEEEECCCCCTTCTTSBS
T ss_pred CceEEEecc-ccccccceeeeecccccee--eccCcccccchhhhccccccchhhccc--cCCEEEEeecccccchhhhh
Confidence 356999999 9999999999999999999 7788754322 235666789999998 799999999854322 222
Q ss_pred HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHH
Q 030169 134 MEAMEA-EL-DLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 134 ~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ 162 (182)
.+.++. +- ..+|+++-|--+ |.+.|.++
T Consensus 124 ~~~l~~mk~~a~lIN~sRG~iv-de~aL~~a 153 (193)
T d1mx3a1 124 DFTVKQMRQGAFLVNTARGGLV-DEKALAQA 153 (193)
T ss_dssp HHHHTTSCTTEEEEECSCTTSB-CHHHHHHH
T ss_pred HHHHhccCCCCeEEecCCceEE-cHHHHHHH
Confidence 222332 22 236674544433 44444443
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.64 E-value=0.00097 Score=49.22 Aligned_cols=102 Identities=12% Similarity=-0.083 Sum_probs=60.2
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEAME 138 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~eAie 138 (182)
||.++|. |+||..+++.+.+.|..++ .--++.+........-...+..+... ++|+.+..+|... +.......++
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~v~~~~~~l~~ 77 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFGSEAVPLERVA--EARVIFTCLPTTREVYEVAEALYP 77 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSCEEE-ECSSTHHHHHHHHHHCCEECCGGGGG--GCSEEEECCSSHHHHHHHHHHHTT
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCCEEE-EeCCHHHHHHHHHHcCCccccccccc--ceeEEEecccchhhhhhhhccccc
Confidence 6999998 9999999999998886555 22222111111111112233334444 4777777776654 4444444444
Q ss_pred cC-CCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 139 AE-LDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 139 ~G-Ik~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.. -..+++.++-.+.++..++.+..++
T Consensus 78 ~~~~~~~iid~sT~~p~~~~~~~~~~~~ 105 (156)
T d2cvza2 78 YLREGTYWVDATSGEPEASRRLAERLRE 105 (156)
T ss_dssp TCCTTEEEEECSCCCHHHHHHHHHHHHT
T ss_pred cccccccccccccCCHHHHHHHHHHHHH
Confidence 42 2335555777888888888777654
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=96.62 E-value=0.00071 Score=52.15 Aligned_cols=86 Identities=16% Similarity=0.064 Sum_probs=57.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEee--------------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV-------------- 124 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfV-------------- 124 (182)
|||+|.|++|-.|+.+++.+.+.| +++ .++..... ...++-=...++++++..+||++|-+-
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g-~~v--~~~~~~~~-~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~ 76 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG-NLI--ALDVHSKE-FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPEL 76 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS-EEE--EECTTCSS-SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEE--EEECCCcc-ccCcCCCHHHHHHHHHHcCCCEEEEecccccccccccCccc
Confidence 689999999999999999988877 455 23333211 122343345577778777899998864
Q ss_pred ----ChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 125 ----PPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 125 ----pp~av~~a~~eAie~GIk~VV~iT 148 (182)
.......+++.|.+.+++.++.-|
T Consensus 77 ~~~~n~~~~~~l~~~~~~~~~~~~~~ss 104 (298)
T d1n2sa_ 77 AQLLNATSVEAIAKAANETGAWVVHYST 104 (298)
T ss_dssp HHHHHTHHHHHHHHHHTTTTCEEEEEEE
T ss_pred cccccccccccchhhhhccccccccccc
Confidence 122234556666677887776644
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.59 E-value=0.0042 Score=47.77 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=56.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe-----------cCcccc----cc---HHHHHhccCCc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH-----------LGLPVF----NS---VAEAKAETKAN 118 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i-----------~GvPVy----~S---v~ea~~~~~~D 118 (182)
+.+||+|.|+||..|+.+++.+++.|.+|+ +.+.+.. .... .++.+. .+ +.++.. ++|
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~-~~~R~~~-~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~--~~~ 77 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTY-VLFRPEV-VSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVD 77 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEE-EECCSCC-SSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEE-EEECCCc-ccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc--Ccc
Confidence 568899999999999999999999999998 5443222 1110 122222 22 333444 678
Q ss_pred EEEEeeChH-------HHHHHHHHHHHcCCCEEEEeC
Q 030169 119 ASVIYVPPP-------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 119 vaVdfVpp~-------av~~a~~eAie~GIk~VV~iT 148 (182)
+.+...++. .....++.|.+.+...++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~S 114 (312)
T d1qyda_ 78 VVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPS 114 (312)
T ss_dssp EEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECS
T ss_pred hhhhhhhhcccccchhhhhHHHHHHHHhcCCcEEEEe
Confidence 877766543 445667778888655555433
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=96.52 E-value=0.0067 Score=45.94 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=55.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE------------ecCccc-------cccHHHHHhccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE------------HLGLPV-------FNSVAEAKAETKA 117 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~------------i~GvPV-------y~Sv~ea~~~~~~ 117 (182)
..+||+|.|+||..|+.+++.+++.|.+|+ +.+ ....... ..++.+ ..+..+..+ .+
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~-~l~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~ 77 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTF-LLV-RESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NV 77 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEE-EEC-CCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEE-EEE-CCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhh--hc
Confidence 458899999999999999999999999999 543 3222210 001111 122334444 66
Q ss_pred cEEEEeeChHHH---HHHHHHHHHcCCCEEEEeC
Q 030169 118 NASVIYVPPPFA---AAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 118 DvaVdfVpp~av---~~a~~eAie~GIk~VV~iT 148 (182)
|.++........ ....+.+.+++++.++..+
T Consensus 78 ~~vi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 111 (307)
T d1qyca_ 78 DVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPS 111 (307)
T ss_dssp SEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECS
T ss_pred eeeeecccccccchhhHHHHHHHHhccccceeee
Confidence 777666654443 4566667777777766533
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0044 Score=47.71 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=57.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCe---EecCccc----cccHHHHHhcc-CCcEEEEeeCh-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGT---EHLGLPV----FNSVAEAKAET-KANASVIYVPP- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~---~i~GvPV----y~Sv~ea~~~~-~~DvaVdfVpp- 126 (182)
+++|+|.|+||-.|+.+++.+++.|. +|. +. +.+.... ....+.. |.++++..+.. ++|+++.....
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~-~~-~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~ 91 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVT-LI-GRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 91 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEE-EE-ESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEE-EE-ecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence 46799999999999999999998883 787 43 3222111 1111111 23333333322 68998865421
Q ss_pred --------------HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 127 --------------PFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 127 --------------~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
.....+++.|.+.|++.+|-+++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~ 130 (232)
T d2bkaa1 92 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG 130 (232)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred ccccchhhhhhhcccccceeeecccccCccccccCCccc
Confidence 1445788899999999876656433
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00079 Score=46.05 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=28.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
..||+|+|+ |+.|..+++.+.+.|.++. ..|.+.
T Consensus 5 ~K~v~ViGl-G~sG~s~a~~L~~~g~~v~--~~D~~~ 38 (93)
T d2jfga1 5 GKNVVIIGL-GLTGLSCVDFFLARGVTPR--VMDTRM 38 (93)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTCCCE--EEESSS
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEE--EeeCCc
Confidence 467999999 9999999999999998888 555543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0017 Score=49.95 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
..+|.|+|+ |+.|+.+++.+..+|++++ +.||.... ......-+.+++|+.+ ..|++++..|-.
T Consensus 44 ~~~vgiiG~-G~IG~~va~~l~~fg~~v~--~~d~~~~~-~~~~~~~~~~l~ell~--~sDii~i~~plt 107 (188)
T d1sc6a1 44 GKKLGIIGY-GHIGTQLGILAESLGMYVY--FYDIENKL-PLGNATQVQHLSDLLN--MSDVVSLHVPEN 107 (188)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSSCCC-CCTTCEECSCHHHHHH--HCSEEEECCCSS
T ss_pred ceEEEEeec-ccchhhhhhhcccccceEe--eccccccc-hhhhhhhhhhHHHHHh--hccceeecccCC
Confidence 467999999 9999999999999999999 77776533 2344556678999998 789999998844
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.39 E-value=0.004 Score=47.68 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=48.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-----------------------ecCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-----------------------HLGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-----------------------i~GvPVy~Sv~ea~~~~ 115 (182)
|||.|+|. |..|..++-.+.+.|.+|+ |+|....--+ ...+....+.+++.+
T Consensus 1 MkI~ViGl-G~vGl~~a~~la~~g~~V~--g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~-- 75 (202)
T d1mv8a2 1 MRISIFGL-GYVGAVCAGCLSARGHEVI--GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL-- 75 (202)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE--EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--
T ss_pred CEEEEECC-CHhHHHHHHHHHhCCCcEE--EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh--
Confidence 68999998 9999999999999999998 7776431100 013456667888887
Q ss_pred CCcEEEEeeCh
Q 030169 116 KANASVIYVPP 126 (182)
Q Consensus 116 ~~DvaVdfVpp 126 (182)
++|+++++||-
T Consensus 76 ~~d~i~i~VpT 86 (202)
T d1mv8a2 76 DSDVSFICVGT 86 (202)
T ss_dssp TCSEEEECCCC
T ss_pred hCCEEEEecCc
Confidence 79999999985
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.0025 Score=50.98 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=59.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE-----------ecCccccccHHH-HHhccCCcEEEEeeC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE-----------HLGLPVFNSVAE-AKAETKANASVIYVP 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~-----------i~GvPVy~Sv~e-a~~~~~~DvaVdfVp 125 (182)
|||+|.|++|-.|+.+++.+++.| .+|+ ++|....+.. ..++--+..+.+ +.+ ++|+++-+.-
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~--~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~--~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVY--GLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEE--EEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEE--EEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHh--CCCccccccc
Confidence 689999999999999999999888 6888 6555432211 123444545555 344 6999887554
Q ss_pred hH------------------HHHHHHHHHHHcCCCEEEEeC
Q 030169 126 PP------------------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 126 p~------------------av~~a~~eAie~GIk~VV~iT 148 (182)
.. ....+++.|.+.+++.+++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss 117 (342)
T d2blla1 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117 (342)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECC
T ss_pred cccccccccCCcccccccccccccccccccccccccccccc
Confidence 21 145577788888999887644
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=96.36 E-value=0.0027 Score=54.64 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=65.0
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--CCeEecCcccccc--HHHHHhccCCcEEEEeeChHHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--GGTEHLGLPVFNS--VAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
++.++|++.|+ |..|+...+.+.+.|.+++ |-+|-.+ .|+...|+||+++ +.+..+...-.+.|+++-+.....
T Consensus 36 ~~~~~~~l~g~-~~~~~~~~~~~~~~~~~v~-~~~d~~~~~~~~~~~g~pv~s~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (395)
T d2py6a1 36 GNATRLVILGT-KGFGAHLMNVRHERPCEVI-AAVDDFRYHSGELYYGLPIISTDRFTELATHDRDLVALNTCRYDGPKR 113 (395)
T ss_dssp GGGCEEEEECS-SSTHHHHHSCSSSCSSEEE-EEECTTTTTSCCEETTEEEECHHHHHHHHHTCTTEEEEECCCSHHHHH
T ss_pred CCCceEEEEcC-chhHHHHHHHHHHCCceEE-EEecCchhhcCceecceEeecHHHhhhhhhccCcEEEEEeccccchhh
Confidence 44578999999 9999999999999999999 9888764 6667899999986 334333323346666666666555
Q ss_pred HH-HHHHHcCCCEEE
Q 030169 132 AI-MEAMEAELDLVV 145 (182)
Q Consensus 132 a~-~eAie~GIk~VV 145 (182)
.. ..+..+|++.+.
T Consensus 114 ~~~~~~~~~~~~~~~ 128 (395)
T d2py6a1 114 FFDQICRTHGIPHLN 128 (395)
T ss_dssp HHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcCCcccc
Confidence 55 444567988864
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.33 E-value=0.00053 Score=52.71 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=63.7
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEec---------CccccccHHHH-HhccCCcEEEEee
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHL---------GLPVFNSVAEA-KAETKANASVIYV 124 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~---------GvPVy~Sv~ea-~~~~~~DvaVdfV 124 (182)
+++.||+|+|+||--|+++.+.+.+. .++|+ .-......|+.+. ..+.+....+. .+ ++|+++...
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~-~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~al 79 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIK-VMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFS--NVDAVFCCL 79 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEE-EEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGG--GCSEEEECC
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEE-EEeccccCCCccccccccccccccccchhhhhhhhc--ccceeeecc
Confidence 46789999999999999999999965 48888 5556666665531 23333333322 23 799999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCC
Q 030169 125 PPPFAAAAIMEAMEAELDLVVCITEGIP 152 (182)
Q Consensus 125 pp~av~~a~~eAie~GIk~VV~iTeG~~ 152 (182)
|.....+.+....+.+ +.|.. ..++-
T Consensus 80 p~~~s~~~~~~l~~~~-~~v~~-~~~~~ 105 (183)
T d2cvoa1 80 PHGTTQEIIKGLPQEL-KIVDL-SADFR 105 (183)
T ss_dssp SSSHHHHHHHTSCSSC-EEEEC-SSTTT
T ss_pred ccchHHHHHHHHHhcC-ccccc-chhhh
Confidence 9999999987655543 44433 44433
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=96.22 E-value=0.0038 Score=49.73 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=49.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---------------ecCccccccHHHHHhccCCcEEE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---------------HLGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---------------i~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
+++||+|.|++|-.|+.+++.+++.|.+|. +++....... ..++-=+..+.++.+...+|+++
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~--~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~ 84 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVK--GYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 84 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence 468999999999999999999999998877 6655432110 11333344467777777889988
Q ss_pred EeeCh
Q 030169 122 IYVPP 126 (182)
Q Consensus 122 dfVpp 126 (182)
.....
T Consensus 85 ~~aa~ 89 (356)
T d1rkxa_ 85 HMAAQ 89 (356)
T ss_dssp ECCSC
T ss_pred hhhcc
Confidence 87753
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.20 E-value=0.0051 Score=50.21 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=28.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeecc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd 91 (182)
+||+|.|++|-.|+.+++.+++.|.+|+ ++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~--~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVC--IVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEE--EEe
Confidence 6899999999999999999999999988 665
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.17 E-value=0.01 Score=44.32 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=56.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeEecCcc-ccccHHHHHhcc--CCcEEEEeeCh-------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTEHLGLP-VFNSVAEAKAET--KANASVIYVPP------- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~i~GvP-Vy~Sv~ea~~~~--~~DvaVdfVpp------- 126 (182)
+||+|.|+||-.|+.+++.+.+.| .+|+ + +.++... +...+. .+.++.+..+.. .+|+++..+..
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~-~-~~r~~~~-~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~~~~~~~ 79 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVI-A-PARKALA-EHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGS 79 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEE-C-CBSSCCC-CCTTEECCBSCHHHHGGGCCSCCSEEEECCCCCHHHHSS
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEE-E-EeCCchh-hcccccccccchhhhhhccccchheeeeeeeeecccccc
Confidence 689999999999999999999887 3666 4 3333322 121121 233455554432 57888876422
Q ss_pred ---------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 ---------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ---------~av~~a~~eAie~GIk~VV~iT 148 (182)
......++.|.+.+++.++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~S 110 (212)
T d2a35a1 80 EEAFRAVDFDLPLAVGKRALEMGARHYLVVS 110 (212)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccccccchhhhhhhccccccccccccccccc
Confidence 2235678888899999877655
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=96.16 E-value=0.0065 Score=48.78 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=57.7
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeecc-CCCCCe----EecCccc-----ccc---HHHHHhccCCcEEEE
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT-PKKGGT----EHLGLPV-----FNS---VAEAKAETKANASVI 122 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd-p~~~G~----~i~GvPV-----y~S---v~ea~~~~~~DvaVd 122 (182)
+++++|+|.|+||..|+.+++.+++.|.+|+ +.+- +..... ...++.+ ++. ++.+.. .+|+..+
T Consensus 1 ~~kktIlVtGatG~iG~~lv~~Ll~~G~~V~-~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~--~~~~~~~ 77 (350)
T d1xgka_ 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVR-AQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFI 77 (350)
T ss_dssp CCCCCEEEESTTSHHHHHHHHHHHHTTCCEE-EEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCCeEE-EEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhc--CCceEEe
Confidence 3567899999999999999999999999998 5432 222100 0112222 232 333344 6777766
Q ss_pred eeCh------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 123 YVPP------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 123 fVpp------~av~~a~~eAie~GIk~VV~iT 148 (182)
-.++ .....+++.|.++|++.++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~aa~~agv~~~v~~S 109 (350)
T d1xgka_ 78 NTTSQAGDEIAIGKDLADAAKRAGTIQHYIYS 109 (350)
T ss_dssp CCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred ecccccchhhhhhhHHHHHHHHhCCCceEEEe
Confidence 5543 3456788888899986655544
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=96.06 E-value=0.00073 Score=52.38 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=68.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------------------------ec--Cccccc--cH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------------------------HL--GLPVFN--SV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------------------------i~--GvPVy~--Sv 108 (182)
+||.|-|| ||.|+.+.+.+.+.+.+|| +-.||...-+. ++ .++++. ++
T Consensus 1 ~kIgINGf-GRIGR~~~R~~~~~~~~iv-aINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p 78 (169)
T d1dssg1 1 SKIGINGF-GRIGRLVLRAALEMGAQVV-AVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKP 78 (169)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHTCCEE-EEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCCcEE-EECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCCh
Confidence 58999999 9999999999999899999 76666542211 11 345554 36
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
+|++ .+.++|++++.+-.....+.+..-++.|++.|++ |.
T Consensus 79 ~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkVii-sa 119 (169)
T d1dssg1 79 ENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII-SA 119 (169)
T ss_dssp GGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE-SS
T ss_pred HHCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEee-cC
Confidence 6664 3458999999999988888888888899999998 53
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.97 E-value=0.0028 Score=48.62 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=66.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCccccccHHHHHhccCCcEEEEeeChHHH-HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av-~~a~ 133 (182)
..+|.|+|+ |+.|+.+++.+..+|++++ +.||....... .++..+.+++|+.+ ++|++++-+|-... ...+
T Consensus 44 ~~~vgiiG~-G~IG~~va~~l~~fg~~v~--~~d~~~~~~~~~~~~~~~~~~~l~~~l~--~sD~v~~~~plt~~T~~li 118 (188)
T d2naca1 44 AMHVGTVAA-GRIGLAVLRRLAPFDVHLH--YTDRHRLPESVEKELNLTWHATREDMYP--VCDVVTLNCPLHPETEHMI 118 (188)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTCEEE--EECSSCCCHHHHHHHTCEECSSHHHHGG--GCSEEEECSCCCTTTTTCB
T ss_pred ccceeeccc-cccchhhhhhhhccCceEE--EEeeccccccccccccccccCCHHHHHH--hccchhhcccccccchhhh
Confidence 467999999 9999999999999999988 88876533222 25777888999998 79999998885432 2222
Q ss_pred -HHHHHc-CCC-EEEEeCCCCCHHHHHHHHHHh
Q 030169 134 -MEAMEA-ELD-LVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 134 -~eAie~-GIk-~VV~iTeG~~~eD~~~l~~~a 163 (182)
.+.++. +-. .+|+++-|=-+ |.+.|.++-
T Consensus 119 ~~~~l~~mk~ga~lIN~aRG~iv-d~~aL~~aL 150 (188)
T d2naca1 119 NDETLKLFKRGAYIVNTARGKLC-DRDAVARAL 150 (188)
T ss_dssp SHHHHTTSCTTEEEEECSCGGGB-CHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEecCchhhh-hHHHHHHHH
Confidence 333333 222 46774544434 333334433
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.88 E-value=0.0013 Score=50.68 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=67.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE--------------------------ec--Ccccc--cc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE--------------------------HL--GLPVF--NS 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~--------------------------i~--GvPVy--~S 107 (182)
|||.|-|| ||.|+.+.+.+.+. +++|| +--||...-+. ++ .++++ ++
T Consensus 1 tkigINGf-GRIGR~v~R~~~~~~~~~iv-~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~ 78 (166)
T d2b4ro1 1 TKLGINGF-GRIGRLVFRAAFGRKDIEVV-AINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD 78 (166)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEE-EEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred CeEEEECC-CHHHHHHHHHHhhCCCcEEE-EECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCC
Confidence 68999999 99999999988865 59999 65556442211 11 35555 34
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
+++++ ++.++|++++.+-.....+.+..-+++|++.|++ |.
T Consensus 79 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii-SA 120 (166)
T d2b4ro1 79 PSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM-SA 120 (166)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE-SS
T ss_pred hHHccccccCCCEEEEecccccchhhhhhhhccCCCEEEE-ec
Confidence 77764 4458999999999999999999999999999998 53
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.84 E-value=0.0091 Score=43.65 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=57.5
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----------ecCccccccHHHH---Hh---ccCC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----------HLGLPVFNSVAEA---KA---ETKA 117 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----------i~GvPVy~Sv~ea---~~---~~~~ 117 (182)
.+.+..+|+|+|+ |.+|...++.++.+|.+++ .+++...-.+ +..-+...+..+. +. ...+
T Consensus 23 ~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi--~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 23 GVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVV--CTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEE--EEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCCCEEEEEcc-cccchhhHhhHhhhccccc--ccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCC
Confidence 3567788999996 9999999999999999988 5666532111 1111111222222 22 1268
Q ss_pred cEEEEeeChHHHHHHHHHHHHcCCCEE
Q 030169 118 NASVIYVPPPFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 118 DvaVdfVpp~av~~a~~eAie~GIk~V 144 (182)
|++++++....+.+.+.+++..+=+.+
T Consensus 100 D~vid~~g~~~~~~~a~~~~~~~G~iv 126 (170)
T d1e3ja2 100 NVTIDCSGNEKCITIGINITRTGGTLM 126 (170)
T ss_dssp SEEEECSCCHHHHHHHHHHSCTTCEEE
T ss_pred ceeeecCCChHHHHHHHHHHhcCCceE
Confidence 999999998877777667776654433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.016 Score=40.68 Aligned_cols=95 Identities=8% Similarity=0.092 Sum_probs=56.9
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccc-c------ccHHHH-HhccCCcEEEEeeChHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPV-F------NSVAEA-KAETKANASVIYVPPPF 128 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPV-y------~Sv~ea-~~~~~~DvaVdfVpp~a 128 (182)
+++|+|+ |++|+.+++.+.+.|.+++ .+|....--+ ..+.++ | +.++++ ++ ++|++++.++.+.
T Consensus 2 ~~iIiG~-G~~G~~la~~L~~~g~~vv--vid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~--~a~~vi~~~~~~~ 76 (134)
T d2hmva1 2 QFAVIGL-GRFGGSIVKELHRMGHEVL--AVDINEEKVNAYASYATHAVIANATEENELLSLGIR--NFEYVIVAIGANI 76 (134)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCE--EEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGG--GCSEEEECCCSCH
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCeEE--EecCcHHHHHHHHHhCCcceeeecccchhhhccCCc--cccEEEEEcCchH
Confidence 6889999 9999999999999998888 5554421100 012222 2 225554 33 6899888887654
Q ss_pred HHHH--HHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Q 030169 129 AAAA--IMEAMEAELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 129 v~~a--~~eAie~GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
.... ...+-..+.+.+++-+.. .++...+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~iiar~~~--~~~~~~l~~ 109 (134)
T d2hmva1 77 QASTLTTLLLKELDIPNIWVKAQN--YYHHKVLEK 109 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCS--HHHHHHHHH
T ss_pred HhHHHHHHHHHHcCCCcEEeeccc--HhHHHHHHH
Confidence 3333 333344577777764443 333444433
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.79 E-value=0.0041 Score=47.95 Aligned_cols=96 Identities=10% Similarity=-0.001 Sum_probs=67.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEec--------Ccccc-ccHHHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHL--------GLPVF-NSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~--------GvPVy-~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+||.|+|+||--|+++.+.+.++ .++|+ .-......|+.+. ..++. .+.+++.+ ++|++....|...
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~-~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~--~~dvvf~a~p~~~ 78 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKIT-YLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALPAGA 78 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEE-EEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCSTTH
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEE-EeeccccCCCcccccCchhhccccccccCHhHhcc--ccceEEEccccHH
Confidence 58999999999999999988864 48888 6555556665432 12222 33555555 6999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
.++.+.. ..+++ ||=.+..|..+|.....
T Consensus 79 s~~~~~~--~~~~~-VIDlSadfRl~~~~~y~ 107 (176)
T d1vkna1 79 SYDLVRE--LKGVK-IIDLGADFRFDDPGVYR 107 (176)
T ss_dssp HHHHHTT--CCSCE-EEESSSTTTCSSHHHHH
T ss_pred HHHHHHh--hccce-EEecCccccccchhhHH
Confidence 9887764 25654 45557778776654433
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=95.78 E-value=0.00011 Score=53.83 Aligned_cols=91 Identities=10% Similarity=0.057 Sum_probs=54.4
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceE-EeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMV-VGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV-~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
|-++|+ |+||+.+++.+.+ +..+. +..-++.+... +..+. .+.+.+|+.+ +.|++++.+|++...+++.+.
T Consensus 2 IgfIG~-G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~-~~~~~~~~~~--~~DiVil~v~d~~i~~v~~~l- 75 (153)
T d2i76a2 2 LNFVGT-GTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGG-KAATLEKHPE--LNGVVFVIVPDRYIKTVANHL- 75 (153)
T ss_dssp CEEESC-CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC-----CEEECSCTTTHHHHHTTT-
T ss_pred EEEEeC-cHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccc-cccchhhhhc--cCcEEEEeccchhhhHHHhhh-
Confidence 457888 9999999987765 33332 02222222110 01233 4567888777 789999999999988887664
Q ss_pred HcCCCEEEEeCCCCCHHHHH
Q 030169 138 EAELDLVVCITEGIPQHDMV 157 (182)
Q Consensus 138 e~GIk~VV~iTeG~~~eD~~ 157 (182)
...=+.|+-++.+.+.+.++
T Consensus 76 ~~~~~ivi~~s~~~~~~~l~ 95 (153)
T d2i76a2 76 NLGDAVLVHCSGFLSSEIFK 95 (153)
T ss_dssp CCSSCCEEECCSSSCGGGGC
T ss_pred cccceeeeecccchhhhhhh
Confidence 33335667767888866544
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.71 E-value=0.0059 Score=42.53 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=30.6
Q ss_pred eeecCCceEEEEccCCCCc-hhhhHHHHHhCCceEEeeccCCC
Q 030169 53 VFVDKNTRVICQGITGKNG-TFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG-~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
..+++.+||-++|+ |..| +.+++.+.+.|.+|. |-|...
T Consensus 3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~Vs--GSD~~~ 42 (96)
T d1p3da1 3 PEMRRVQQIHFIGI-GGAGMSGIAEILLNEGYQIS--GSDIAD 42 (96)
T ss_dssp CCCTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEE--EEESCC
T ss_pred ccchhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEE--EEeCCC
Confidence 34677889999999 7777 566889999999887 777654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.69 E-value=0.0036 Score=48.54 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCccccccHHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
..++.|+|+ |+.|+.+++.+..+|+++. +.||....... .+..-+.+++++++ ..|++++.+|-.
T Consensus 47 g~tvgIiG~-G~IG~~va~~l~~fg~~v~--~~d~~~~~~~~~~~~~~~~~~~l~~ll~--~sD~v~l~~plt 114 (191)
T d1gdha1 47 NKTLGIYGF-GSIGQALAKRAQGFDMDID--YFDTHRASSSDEASYQATFHDSLDSLLS--VSQFFSLNAPST 114 (191)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE--EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCC
T ss_pred ccceEEeec-ccchHHHHHHHHhhccccc--cccccccccchhhcccccccCCHHHHHh--hCCeEEecCCCC
Confidence 467999999 9999999999999999999 78876543221 24455678999998 789999998864
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=95.65 E-value=0.0018 Score=49.81 Aligned_cols=87 Identities=15% Similarity=0.004 Sum_probs=66.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------------------------Eec--Ccccccc--HH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------------------------EHL--GLPVFNS--VA 109 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------------------------~i~--GvPVy~S--v~ 109 (182)
+||.|-|| ||.|+.+.+.+.+.+++|| +--|+..... .++ .++++.. ++
T Consensus 1 ikigINGf-GRIGR~~~R~l~~~~i~iv-~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~ 78 (168)
T d2g82a1 1 MKVGINGF-GRIGRQVFRILHSRGVEVA-LINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK 78 (168)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEE-EEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred CEEEEECC-cHHHHHHHHHHhcCCCEEE-EECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChH
Confidence 58999999 9999999998888899999 6544422100 011 2455554 67
Q ss_pred HHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 110 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 110 ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iT 148 (182)
+++ .+.++|++++.+-.....+.+..-++.|++.|++ |
T Consensus 79 ~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii-S 117 (168)
T d2g82a1 79 EIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII-T 117 (168)
T ss_dssp GCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE-S
T ss_pred HCcccccCCceeEeccccccchHHhhhhhccccceeee-c
Confidence 765 3458999999999988888889999999999998 5
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.63 E-value=0.014 Score=46.16 Aligned_cols=84 Identities=14% Similarity=0.055 Sum_probs=59.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++-+|+.+++.+.+.|.+|+ .++..... .-...+++.++...++ ..|.+.++.+.++++
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~--i~~r~~~~-------~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~ 75 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVV--VASRNLEE-------ASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLE 75 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-------HHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH
Confidence 45688889999999999999999999988 44432211 1123344444334443 457889999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. +|..+|+ ..|+
T Consensus 76 ~~~~~~g~iDiLVn-nAG~ 93 (251)
T d1vl8a_ 76 AVKEKFGKLDTVVN-AAGI 93 (251)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 99887 7888888 5554
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.58 E-value=0.0032 Score=48.33 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=66.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe--cCccccccHHHHHhccCCcEEEEeeChHHH-HHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH--LGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i--~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av-~~a~~ 134 (182)
..++.|+|+ |+.|+.+++.+..+|++|+ +.||....... .++. +.+++|+++ ++|++++.+|-... ...+.
T Consensus 44 ~k~vgiiG~-G~IG~~va~~~~~fg~~v~--~~d~~~~~~~~~~~~~~-~~~l~ell~--~sDiv~~~~Plt~~T~~lin 117 (184)
T d1ygya1 44 GKTVGVVGL-GRIGQLVAQRIAAFGAYVV--AYDPYVSPARAAQLGIE-LLSLDDLLA--RADFISVHLPKTPETAGLID 117 (184)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE--EECTTSCHHHHHHHTCE-ECCHHHHHH--HCSEEEECCCCSTTTTTCBC
T ss_pred ceeeeeccc-cchhHHHHHHhhhccceEE--eecCCCChhHHhhcCce-eccHHHHHh--hCCEEEEcCCCCchhhhhhh
Confidence 467999998 9999999999999999999 88887633211 2343 568999998 79999999985443 23332
Q ss_pred -HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhc
Q 030169 135 -EAMEA-ELD-LVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 135 -eAie~-GIk-~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+.++. +-. .+|+++-|=-+.+ +.|.++-+
T Consensus 118 ~~~l~~mk~~a~lIN~sRG~iVde-~aL~~aL~ 149 (184)
T d1ygya1 118 KEALAKTKPGVIIVNAARGGLVDE-AALADAIT 149 (184)
T ss_dssp HHHHTTSCTTEEEEECSCTTSBCH-HHHHHHHH
T ss_pred HHHHhhhCCCceEEEecchhhhhh-HHHHHHHh
Confidence 33332 222 4677555544444 44444433
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.53 E-value=0.029 Score=45.64 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=60.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.+.++|.|+++.+|+.+++.+.+.|.+|++...++...+..-..-..-...++. .........+....+.+.+.+++++
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~v~~~~ 85 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEI-RRRGGKAVANYDSVEAGEKLVKTAL 85 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHH-HHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHH-hhcccccccccchHHHHHHHHHHHH
Confidence 345778899999999999999999999884444443322101111111112222 2224577888889999999999999
Q ss_pred Hc--CCCEEEEeCCC
Q 030169 138 EA--ELDLVVCITEG 150 (182)
Q Consensus 138 e~--GIk~VV~iTeG 150 (182)
+. ++..+|+ -.|
T Consensus 86 ~~~G~iDiLVn-NAG 99 (302)
T d1gz6a_ 86 DTFGRIDVVVN-NAG 99 (302)
T ss_dssp HHTSCCCEEEE-CCC
T ss_pred HHcCCCCEEEE-CCc
Confidence 87 5888887 444
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.40 E-value=0.006 Score=45.00 Aligned_cols=85 Identities=11% Similarity=-0.004 Sum_probs=51.9
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-----ecCcccccc--H-HHHHh---ccCCcEEEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-----HLGLPVFNS--V-AEAKA---ETKANASVI 122 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-----i~GvPVy~S--v-~ea~~---~~~~DvaVd 122 (182)
.+++..+|+|.|++|..|...++.++..|.+++ +.+.....-+. ...+--|++ + +++.+ ..++|+++|
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi-~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d 100 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIY-TTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLN 100 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEE-EEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEECCCCCcccccchhhccccccce-eeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEe
Confidence 467778899999999999999999999999998 65543210000 001111222 2 33322 235788888
Q ss_pred eeChHHHHHHHHHHHHcC
Q 030169 123 YVPPPFAAAAIMEAMEAE 140 (182)
Q Consensus 123 fVpp~av~~a~~eAie~G 140 (182)
++..+.. +.+..++..+
T Consensus 101 ~~g~~~~-~~~~~~l~~~ 117 (183)
T d1pqwa_ 101 SLAGEAI-QRGVQILAPG 117 (183)
T ss_dssp CCCTHHH-HHHHHTEEEE
T ss_pred cccchHH-HHHHHHhcCC
Confidence 8886543 3344555444
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=95.32 E-value=0.0087 Score=48.92 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=46.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---------cCccc-------cccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---------LGLPV-------FNSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---------~GvPV-------y~Sv~ea~~~~~~DvaVd 122 (182)
|||+|.|++|-.|+.+++.+++.|.++| .++|........ .++.. +..++++.+..+||+++-
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih 79 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTV-VNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEE-EEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEE-EEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence 6899999999999999999999998877 788753211110 12222 234666666668999987
Q ss_pred ee
Q 030169 123 YV 124 (182)
Q Consensus 123 fV 124 (182)
+.
T Consensus 80 lA 81 (361)
T d1kewa_ 80 LA 81 (361)
T ss_dssp CC
T ss_pred Cc
Confidence 73
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0025 Score=49.26 Aligned_cols=86 Identities=16% Similarity=0.059 Sum_probs=66.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE--------------------------ec--Cccccc--c
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE--------------------------HL--GLPVFN--S 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~--------------------------i~--GvPVy~--S 107 (182)
+||.|-|| ||.|+.+.+.+.+. +++|| +--|+.. -+. ++ .++++. +
T Consensus 2 ikigINGF-GRIGR~v~R~~~~~~~i~iv-aINd~~~-~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~ 78 (166)
T d1gado1 2 IKVGINGF-GRIGRIVFRAAQKRSDIEIV-AINDLLD-ADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 78 (166)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEE-EEECSSC-HHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECC-cHHHHHHHHHHhhCCCeEEE-EEeCCCC-HHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCC
Confidence 58999999 99999999988876 49999 6444422 110 11 366664 3
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iT 148 (182)
+++++ ++.++|++++.+-.....+-+..-++.|++.|+. |
T Consensus 79 p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkVii-S 119 (166)
T d1gado1 79 PANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM-T 119 (166)
T ss_dssp GGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE-S
T ss_pred hHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEe-e
Confidence 77775 4568999999999998888888889999999997 5
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.015 Score=42.73 Aligned_cols=90 Identities=18% Similarity=0.102 Sum_probs=60.1
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEe---cCc-----cccccHHHHHh------ccCCc
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEH---LGL-----PVFNSVAEAKA------ETKAN 118 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i---~Gv-----PVy~Sv~ea~~------~~~~D 118 (182)
.+++..+|+|+|+ |-+|...++.+...|. +|+ .+++...-.+. .|. +--.+..+..+ ...+|
T Consensus 23 ~~~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi--~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~D 99 (171)
T d1pl8a2 23 GVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVV--VTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPE 99 (171)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEE--EEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred CCCCCCEEEEECC-CccHHHHHHHHHHcCCceEE--eccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCce
Confidence 3566778999998 9999999999999996 677 45543211110 111 11123333322 23689
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 119 ASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 119 vaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++++....+.+.+..++..|=+.++.
T Consensus 100 vvid~~G~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 100 VTIECTGAEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp EEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred EEEeccCCchhHHHHHHHhcCCCEEEEE
Confidence 9999999988888888888877555543
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.0071 Score=45.58 Aligned_cols=106 Identities=11% Similarity=0.040 Sum_probs=63.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCC-----CeEe------------cCccccc--cHHHHHh
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKG-----GTEH------------LGLPVFN--SVAEAKA 113 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~-----G~~i------------~GvPVy~--Sv~ea~~ 113 (182)
+..+|++.|+ |..|+.+++.+.+.. .+++ +-.+..+. |... ...+-++ .+.+...
T Consensus 3 k~i~I~l~G~-G~VG~~l~~~l~~~~~~l~~~v~-~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T d1ebfa1 3 KVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLV-LLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK 80 (168)
T ss_dssp SEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEE-EEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred CEEEEEEEeC-CHHHHHHHHHHHHhHHHhhhheE-EEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhc
Confidence 4568999999 999999999888533 4555 43332110 1000 0111111 1222222
Q ss_pred -ccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC---CCHHHHHHHHHHhcc
Q 030169 114 -ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG---IPQHDMVINFTRVNI 165 (182)
Q Consensus 114 -~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG---~~~eD~~~l~~~ak~ 165 (182)
...+|+.++.+......+...+|+++|+++|-+ --+ .+-++..+|.+++++
T Consensus 81 ~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTA-NK~~la~~~~~~~~L~~~a~~ 135 (168)
T d1ebfa1 81 TSPKPVILVDNTSSAYIAGFYTKFVENGISIATP-NKKAFSSDLATWKALFSNKPT 135 (168)
T ss_dssp TCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECC-CCGGGSSCHHHHHHHTCCCTT
T ss_pred cCCCceEEEEecCChHHHHHHHHHHHcCCeEEec-CcccccCCHHHHHHHHHHHHH
Confidence 336789999999999999999999999998754 221 123445556555543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.025 Score=44.65 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=67.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCcE---EEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KANA---SVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~Dv---aVdfVpp~av~~a~ 133 (182)
+..++|.|+++..|..+++.+.+.|.+|+ .++..... +-...+|+.++. +.++ ..|.+.++.+.+++
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv--~~~r~~~~-------l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v 80 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVV--GCARTVGN-------IEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 80 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-------HHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHH
Confidence 34588899999999999999999999988 44443211 112233333322 2233 34778999999999
Q ss_pred HHHHHc--CCCEEEEeC--------CCCCHHHHHHHHHHhcccch
Q 030169 134 MEAMEA--ELDLVVCIT--------EGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 134 ~eAie~--GIk~VV~iT--------eG~~~eD~~~l~~~ak~ipv 168 (182)
+++.+. ++..+|+-+ +.++.++..+..+.-=.-++
T Consensus 81 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~ 125 (257)
T d1xg5a_ 81 SAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALS 125 (257)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHH
Confidence 999987 788888844 22456666666555443333
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=95.20 E-value=0.02 Score=45.03 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=58.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++..|+.+++.+.+.|.+|+ .++..... .-...+++.++...+ +..|.+.++.+.++++
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~--i~~r~~~~-------~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 79 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVA--VIYRSAAD-------AVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ 79 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEE--EEESSCTT-------HHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-------HHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence 45688889999999999999999999988 44443322 112234443433333 4457789999999999
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..+|+ ..|
T Consensus 80 ~~~~~~g~iDilVn-nAg 96 (260)
T d1h5qa_ 80 QIDADLGPISGLIA-NAG 96 (260)
T ss_dssp HHHHHSCSEEEEEE-CCC
T ss_pred HHHHHhCCCcEecc-ccc
Confidence 99987 5666776 444
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.026 Score=45.07 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=55.3
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----------ecCccc-------cccHHHHHhccCCcEEEEe
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----------HLGLPV-------FNSVAEAKAETKANASVIY 123 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----------i~GvPV-------y~Sv~ea~~~~~~DvaVdf 123 (182)
|+|.|++|-.|+.+++.+++.|.+|+ ++|....+.. ..++.+ ...++++.+..+||+++-+
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~g~~V~--~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 81 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIENGYDCV--VADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 81 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEE--EEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred EEEeCCCcHHHHHHHHHHHHCcCeEE--EEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence 77889999999999999999999998 4542111100 012222 2235666666689998864
Q ss_pred eC------------------hHHHHHHHHHHHHcCCCEEEEeC
Q 030169 124 VP------------------PPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 124 Vp------------------p~av~~a~~eAie~GIk~VV~iT 148 (182)
-- -.....+++.|.+.+++.++.++
T Consensus 82 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~S 124 (347)
T d1z45a2 82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSS 124 (347)
T ss_dssp CSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cccccccccccCcccccccchhhhHHHHHHHHhcccceEEeec
Confidence 31 11123456667788998776645
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=95.12 E-value=0.0093 Score=46.54 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=64.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-----CceEEeeccCCCCCeE----------------------------------e
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-----TKMVVGGVTPKKGGTE----------------------------------H 99 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-----~~IV~AgVdp~~~G~~----------------------------------i 99 (182)
+||.|-|| ||.|+.+.+.+.+.+ ++|| +-.||...-+. +
T Consensus 3 ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv-~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~ 80 (190)
T d1k3ta1 3 IKVGINGF-GRIGRMVFQALCEDGLLGTEIDVV-AVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV 80 (190)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEE-EEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred eEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEE-EEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEE
Confidence 68999999 999999999887643 6788 76667532110 0
Q ss_pred cCccc-----cccHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 100 LGLPV-----FNSVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 100 ~GvPV-----y~Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
.|-++ ..++++++ ++.++|++++.+-.....+.+..-+++|++.|++ |.
T Consensus 81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii-SA 135 (190)
T d1k3ta1 81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVI-SA 135 (190)
T ss_dssp TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeee-cc
Confidence 12222 23356664 3458999999999888888999999999999998 53
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=95.10 E-value=0.0041 Score=47.97 Aligned_cols=86 Identities=14% Similarity=0.008 Sum_probs=63.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh----CCceEEeeccCCCCCe----------------E---------ec--Ccccccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY----GTKMVVGGVTPKKGGT----------------E---------HL--GLPVFNS 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~----g~~IV~AgVdp~~~G~----------------~---------i~--GvPVy~S 107 (182)
+||.|-|| ||.|+.+.+.+.+. .++|| +--||..... + ++ .+++|..
T Consensus 2 ikigINGf-GRIGR~v~R~~~~~~~~~~~~vv-aINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~ 79 (173)
T d1obfo1 2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIV-AINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN 79 (173)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEE-EEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred eEEEEECC-cHHHHHHHHHHHhCCCCCCeEEE-EEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEec
Confidence 68999999 99999999988753 37888 6555432110 0 11 3555544
Q ss_pred --HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 --VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 --v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++++ ++.++|++++.+-.....+.+..-+++|.+.|++
T Consensus 80 ~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii 121 (173)
T d1obfo1 80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII 121 (173)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEE
Confidence 67765 4468999999999888888888889999999998
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.09 E-value=0.014 Score=40.63 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=29.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
+..||+|+|. |+.|..-++.+++.|.++. -++|..
T Consensus 11 ~~k~vlVvG~-G~va~~ka~~ll~~ga~v~--v~~~~~ 45 (113)
T d1pjqa1 11 RDRDCLIVGG-GDVAERKARLLLEAGARLT--VNALTF 45 (113)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBEEE--EEESSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEE--EEeccC
Confidence 4578999999 9999999999999998877 566654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.012 Score=43.41 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=54.1
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cC-cccc--cc--HHHHH-h---ccCCcEEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LG-LPVF--NS--VAEAK-A---ETKANASV 121 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~G-vPVy--~S--v~ea~-~---~~~~DvaV 121 (182)
.+++..+|+|.|++|-.|...++..+..|.+++ +.+.... ..+. .| -.++ ++ +.+.+ + ...+|+++
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi-~~~~~~~-~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYGLKIL-GTAGTEE-GQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEESSHH-HHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCCCCEEEEEeccccccccccccccccCcccc-ccccccc-ccccccccCcccccccccccHHHHhhhhhccCCceEEe
Confidence 456788999999999999999999999999998 6554322 1111 11 1233 22 32322 2 23589999
Q ss_pred EeeChHHHHHHHHHHHHcC
Q 030169 122 IYVPPPFAAAAIMEAMEAE 140 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~G 140 (182)
+.+.... .+....+++.+
T Consensus 103 d~~g~~~-~~~~~~~l~~~ 120 (174)
T d1yb5a2 103 EMLANVN-LSKDLSLLSHG 120 (174)
T ss_dssp ESCHHHH-HHHHHHHEEEE
T ss_pred ecccHHH-HHHHHhccCCC
Confidence 9988654 44445566554
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.06 E-value=0.025 Score=44.38 Aligned_cols=76 Identities=21% Similarity=0.226 Sum_probs=56.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
++.++|.|+++..|+.+++.+.+.|.+|+ ..+... +.++++.++.+. =+..|...++.+.++++++
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~--~~~r~~-----------~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 71 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLV--ACDIEE-----------GPLREAAEAVGAHPVVMDVADPASVERGFAEA 71 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCH-----------HHHHHHHHTTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCH-----------HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH
Confidence 46688889999999999999999999988 444332 113333332222 2456888999999999999
Q ss_pred HHc--CCCEEEE
Q 030169 137 MEA--ELDLVVC 146 (182)
Q Consensus 137 ie~--GIk~VV~ 146 (182)
.+. ++..+|+
T Consensus 72 ~~~~g~iDilVn 83 (242)
T d1ulsa_ 72 LAHLGRLDGVVH 83 (242)
T ss_dssp HHHHSSCCEEEE
T ss_pred HHhcCCceEEEE
Confidence 987 6888887
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.023 Score=44.86 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=43.2
Q ss_pred ceE-EEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe----------E------------ecCccccccHHHHHhcc
Q 030169 59 TRV-ICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----------E------------HLGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trV-iVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~----------~------------i~GvPVy~Sv~ea~~~~ 115 (182)
.|| +|.|++|-.|+.+++.+++.|.+|+ +++...... . ..++.-...+.++.+..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~--~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 78 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVH--GIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV 78 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEE--EEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence 378 7999999999999999999999999 555432100 0 01233334466666666
Q ss_pred CCcEEEEee
Q 030169 116 KANASVIYV 124 (182)
Q Consensus 116 ~~DvaVdfV 124 (182)
++|+++...
T Consensus 79 ~~~~v~~~~ 87 (347)
T d1t2aa_ 79 KPTEIYNLG 87 (347)
T ss_dssp CCSEEEECC
T ss_pred ccceeeeee
Confidence 777777653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.98 E-value=0.044 Score=43.83 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=58.4
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccC-CC------------CCe-E--e-cCccccccHHHHHhccCC
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP-KK------------GGT-E--H-LGLPVFNSVAEAKAETKA 117 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp-~~------------~G~-~--i-~GvPVy~Sv~ea~~~~~~ 117 (182)
+.+.++|+|.|++|-.|+.+++.+++.|.+|+ |-+.. .+ .++ + + .++--..++.+++. ++
T Consensus 8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~-~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 84 (342)
T d1y1pa1 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVR-GTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GA 84 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TC
T ss_pred CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEE-EEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc--cc
Confidence 45568999999999999999999999999998 65421 11 000 0 1 12333334555555 67
Q ss_pred cEEEEeeCh---------------HHHHHHHHHHHHc-CCCEEEEeCC
Q 030169 118 NASVIYVPP---------------PFAAAAIMEAMEA-ELDLVVCITE 149 (182)
Q Consensus 118 DvaVdfVpp---------------~av~~a~~eAie~-GIk~VV~iTe 149 (182)
|.++-...+ .....+++.|.+. +++.+|..++
T Consensus 85 ~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS 132 (342)
T d1y1pa1 85 AGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp SEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred hhhhhhcccccccccccccccchhhhHHHHHHhhhccccccccccccc
Confidence 776644433 1234556667675 7898887554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.92 E-value=0.011 Score=44.21 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=55.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCc-eEEeeccCCCCC-eEe---cC--ccccccHHHHHhccCCcEEEEeeChH--
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTK-MVVGGVTPKKGG-TEH---LG--LPVFNSVAEAKAETKANASVIYVPPP-- 127 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~-IV~AgVdp~~~G-~~i---~G--vPVy~Sv~ea~~~~~~DvaVdfVpp~-- 127 (182)
++.+|+|+|+ |.||+.+++.+..+|.+ +. -.++...- ++. .| .--|+++.+.+. ++|++|..++..
T Consensus 23 ~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~--v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~--~~Divi~atss~~~ 97 (159)
T d1gpja2 23 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVL--VANRTYERAVELARDLGGEAVRFDELVDHLA--RSDVVVSATAAPHP 97 (159)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCSEEE--EECSSHHHHHHHHHHHTCEECCGGGHHHHHH--TCSEEEECCSSSSC
T ss_pred ccCeEEEECC-CHHHHHHHHHHHhcCCcEEE--EEcCcHHHHHHHHHhhhcccccchhHHHHhc--cCCEEEEecCCCCc
Confidence 4678999999 99999999999999964 54 44543200 000 12 334677888877 899999999754
Q ss_pred -HHHHHHHHHHHc
Q 030169 128 -FAAAAIMEAMEA 139 (182)
Q Consensus 128 -av~~a~~eAie~ 139 (182)
.-.+.++.+++.
T Consensus 98 ii~~~~i~~~~~~ 110 (159)
T d1gpja2 98 VIHVDDVREALRK 110 (159)
T ss_dssp CBCHHHHHHHHHH
T ss_pred cccHhhhHHHHHh
Confidence 456777777754
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.89 E-value=0.048 Score=42.59 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=59.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.++++|.|+++.+|+++++.+.+.|.+|+ .++..... ... -..+-+|.+.++.+.++++++.
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga~V~--~~~r~~~~--~~~--------------~~~~~~Dv~~~~~v~~~~~~~~ 68 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGHKVA--VTHRGSGA--PKG--------------LFGVEVDVTDSDAVDRAFTAVE 68 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESSSCC--CTT--------------SEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCcch--hcC--------------ceEEEEecCCHHHHHHHHHHHH
Confidence 45688889999999999999999999988 44433211 111 1134567788999999999999
Q ss_pred Hc--CCCEEEEeC--------CCCCHHHHHHHHH
Q 030169 138 EA--ELDLVVCIT--------EGIPQHDMVINFT 161 (182)
Q Consensus 138 e~--GIk~VV~iT--------eG~~~eD~~~l~~ 161 (182)
+. ++..+|+-+ +.++++|.+++.+
T Consensus 69 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~ 102 (237)
T d1uzma1 69 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVIN 102 (237)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHH
T ss_pred HhcCCceEEEeeecccccccHhhCCHHHHHHHHH
Confidence 87 688887733 2335555555444
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=94.78 E-value=0.02 Score=46.37 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=27.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGG 89 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~Ag 89 (182)
..+|+|||+ |+.|+.+++.+.+.|.+|| +-
T Consensus 36 g~~v~IQGf-GnVG~~~a~~L~e~Gakvv-av 65 (255)
T d1bgva1 36 GKTVALAGF-GNVAWGAAKKLAELGAKAV-TL 65 (255)
T ss_dssp TCEEEECCS-SHHHHHHHHHHHHHTCEEE-EE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCeEE-EE
Confidence 468999999 9999999999999999999 53
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.76 E-value=0.024 Score=44.28 Aligned_cols=33 Identities=24% Similarity=0.586 Sum_probs=29.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
.||+|.|++|-.|+.+++.+++.|.+|+ +++..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~--~~~r~ 33 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVH--GLVAR 33 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEE--EEECC
Confidence 4799999999999999999999999999 55543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.70 E-value=0.037 Score=39.94 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCc--eEEeeccCCCC---------CeEecCccccccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTK--MVVGGVTPKKG---------GTEHLGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~--IV~AgVdp~~~---------G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
-.+|+|.|++|..|+.+++.+++.|-+ ++ ++..... .-...++--..++.++++ ++|+++.+...
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~--~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~a~~ 78 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAK--GLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILTSA 78 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEE--EEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECCCC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEE--EEcCCHHHHHhccCCcEEEEeeeccccccccccc--cceeeEEEEee
Confidence 357999999999999999999988844 44 4332210 001123333334566666 78888876532
Q ss_pred -------------------------------HHHHHHHHHHHHcCCCEEEEe
Q 030169 127 -------------------------------PFAAAAIMEAMEAELDLVVCI 147 (182)
Q Consensus 127 -------------------------------~av~~a~~eAie~GIk~VV~i 147 (182)
..+..++..+...+.+.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (252)
T d2q46a1 79 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVV 130 (252)
T ss_dssp CCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEE
T ss_pred ccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccc
Confidence 345666777777777766543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.038 Score=44.65 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=44.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-----------------e--E--ecCccccccHHHHHhccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-----------------T--E--HLGLPVFNSVAEAKAETKA 117 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-----------------~--~--i~GvPVy~Sv~ea~~~~~~ 117 (182)
++|+|.|++|-.|+.+++.+++.|.+|+ +++..... . + ..++-=+.+++++++..+|
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVH--GIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEE--EEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCC
Confidence 3566899999999999999999999999 44432110 0 0 0133334447777777789
Q ss_pred cEEEEee
Q 030169 118 NASVIYV 124 (182)
Q Consensus 118 DvaVdfV 124 (182)
|+++.+.
T Consensus 80 d~v~h~a 86 (357)
T d1db3a_ 80 DEVYNLG 86 (357)
T ss_dssp SEEEECC
T ss_pred CEEEEee
Confidence 9999885
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.57 E-value=0.051 Score=42.36 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=57.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
...++|.|+++..|..+++.+.+.|.+|+ ..+... + .+++..++.+.+ +..|.+.++.++++++
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~~V~--~~~r~~--~---------~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~ 71 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGASLV--AVDREE--R---------LLAEAVAALEAEAIAVVADVSDPKAVEAVFA 71 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCH--H---------HHHHHHHTCCSSEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCH--H---------HHHHHHHHcCCceEEEEecCCCHHHHHHHHH
Confidence 45688889999999999999999999998 443322 1 134444433333 4567889999999999
Q ss_pred HHHHc--CCCEEEEeC
Q 030169 135 EAMEA--ELDLVVCIT 148 (182)
Q Consensus 135 eAie~--GIk~VV~iT 148 (182)
++.+. ++..+|+-+
T Consensus 72 ~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 72 EALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHSCCCEEEEGG
T ss_pred HHHHHhCCccEecccc
Confidence 99885 688888744
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=94.56 E-value=0.033 Score=44.21 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=57.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++..|+++++.+.+.|.+|+ ..+..... --..+.+.+++...+ +..|.+.++.+.++++
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv--~~~r~~~~-------~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~ 77 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVV--VNYRSKED-------EANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESSCHH-------HHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCcHH-------HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 35578889999999999999999999988 44433211 111222223323334 3447789999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 78 ~~~~~~G~iDiLVn-nAG~ 95 (261)
T d1geea_ 78 SAIKEFGKLDVMIN-NAGL 95 (261)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHhCCCCEeec-ccee
Confidence 99987 7888887 5443
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=94.56 E-value=0.0065 Score=46.78 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=65.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE--------------------------ec--Cccccc--c
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE--------------------------HL--GLPVFN--S 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~--------------------------i~--GvPVy~--S 107 (182)
.||.|-|| ||.|+.+.+.+.+. .+++| +-.||...-+. ++ .++++. +
T Consensus 2 ikIgINGF-GRIGR~v~R~~~~~~~~~iv-aINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~ 79 (169)
T d1u8fo1 2 VKVGVNGF-GRIGRLVTRAAFNSGKVDIV-AINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD 79 (169)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSSEEE-EEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred cEEEEECC-cHHHHHHHHHHHHCCCcEEE-EecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC
Confidence 58999999 99999999988865 49999 76665432111 11 344543 3
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
+++++ ++.++|++++.+-.....+.+..-++.|++.|+. +.
T Consensus 80 p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkVii-Sa 121 (169)
T d1u8fo1 80 PSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVII-SA 121 (169)
T ss_dssp GGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEE-SS
T ss_pred hhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEee-cc
Confidence 66664 3457999999999988888888888999999998 53
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.55 E-value=0.023 Score=44.95 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
|||+|.|++|-.|+.+++.+++.|.++.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~ 28 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDV 28 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCcc
Confidence 6899999999999999999998885544
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.54 E-value=0.022 Score=45.13 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=55.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~ 133 (182)
+.++|+|.|+++.+|+++++.+.+.|.+|+ .++..... . +.+.+...+...++ .+|.+.++.+.+++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~--i~~r~~~~--l------~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 74 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVY--TCSRNEKE--L------DECLEIWREKGLNVEGSVCDLLSRTERDKLM 74 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--H------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHHHHHhcCCCceEEEeecCCHHHHHHHH
Confidence 456799999999999999999999999988 55543211 1 11222222222222 46889999999999
Q ss_pred HHHHHc--C-CCEEEE
Q 030169 134 MEAMEA--E-LDLVVC 146 (182)
Q Consensus 134 ~eAie~--G-Ik~VV~ 146 (182)
+++.+. | +..+++
T Consensus 75 ~~~~~~~~g~idilin 90 (258)
T d1ae1a_ 75 QTVAHVFDGKLNILVN 90 (258)
T ss_dssp HHHHHHTTSCCCEEEE
T ss_pred HHHHHHhCCCcEEEec
Confidence 999976 4 566665
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.53 E-value=0.034 Score=44.21 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.0
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccC
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP 92 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp 92 (182)
.+.++|+|.|++|-.|+.+++.+.+.|.+|+ |+|.
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~--~~d~ 48 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVV--GLDN 48 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEEC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEE--EEEC
Confidence 3446799999999999999999999999999 5654
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.0071 Score=48.31 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--Eec---C---cccc--ccHHHHHhccCCcEEEEee---C
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHL---G---LPVF--NSVAEAKAETKANASVIYV---P 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~---G---vPVy--~Sv~ea~~~~~~DvaVdfV---p 125 (182)
.||+|.|++|-.|+.+++.+++.|.+|+ +++....+. ... . +.+. +.++.+.. ++|+++-+. .
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~--~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~VihlAa~~~ 77 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVT--VVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASPAS 77 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCC--CCSEEEECCSCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEE--EEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHc--CCCEEEECcccCC
Confidence 6899999999999999999999999999 454211111 111 1 1111 11223233 689887542 1
Q ss_pred -------hH--------HHHHHHHHHHHcCCCEEEE
Q 030169 126 -------PP--------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 -------p~--------av~~a~~eAie~GIk~VV~ 146 (182)
|. .+..+++.|.+.+++.|.+
T Consensus 78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~ 113 (312)
T d2b69a1 78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLA 113 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred chhHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 11 2346677777889987665
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.29 E-value=0.025 Score=44.57 Aligned_cols=80 Identities=11% Similarity=0.162 Sum_probs=58.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++-+|+++++.+.+.|.+|+ .++.+. +.++++.++.+.+ +..|.+.++.+.++++
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~--~~~r~~-----------~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~ 71 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGARVA--IADINL-----------EAARATAAEIGPAACAIALDVTDQASIDRCVA 71 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTEEEE--EEESCH-----------HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCH-----------HHHHHHHHHhCCceEEEEeeCCCHHHHHHHHH
Confidence 46688889999999999999999999988 444322 1133333333333 3557889999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 72 ~~~~~~g~iDilVn-nAg~ 89 (256)
T d1k2wa_ 72 ELLDRWGSIDILVN-NAAL 89 (256)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHhCCccEEEe-eccc
Confidence 99987 6888887 5443
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.068 Score=42.32 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=28.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeecc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd 91 (182)
.||+|.|++|-.|+.+++.+++.|-+|+ ++|
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~--~ld 33 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPV--VID 33 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEE--EEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEE--EEE
Confidence 5899999999999999999999998898 554
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.19 E-value=0.028 Score=44.10 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=45.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC----------Ce---E---------ecCccccccHHHHHhccC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG----------GT---E---------HLGLPVFNSVAEAKAETK 116 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~----------G~---~---------i~GvPVy~Sv~ea~~~~~ 116 (182)
.+++|.|++|-.|+.+++.+++.|.+|+ |++.... .. . ..++.-+.++.+.++..+
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~ 79 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVH--GLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK 79 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEE--EEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence 5689999999999999999999999999 5554221 00 0 024444555666666668
Q ss_pred CcEEEEee
Q 030169 117 ANASVIYV 124 (182)
Q Consensus 117 ~DvaVdfV 124 (182)
+|+++-+.
T Consensus 80 ~D~Vih~A 87 (339)
T d1n7ha_ 80 PDEVYNLA 87 (339)
T ss_dssp CSEEEECC
T ss_pred cchhhhcc
Confidence 99988765
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.17 E-value=0.044 Score=43.10 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=56.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEE---EEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS---VIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dva---VdfVpp~av~~a~~e 135 (182)
+.++|.|+++..|+++++.+.+.|.+|+ ..+..... ....+.+..++...++. .|...++.+.+.+++
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vv--i~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~ 89 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVI--VNYANSTE-------SAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEE 89 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESSCHH-------HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEE--EEeCCchH-------HHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHH
Confidence 5688889999999999999999999988 33333211 11222222333333333 477889999999999
Q ss_pred HHHc--CCCEEEEeCCC
Q 030169 136 AMEA--ELDLVVCITEG 150 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG 150 (182)
+.+. ++..+|+ ..|
T Consensus 90 ~~~~~g~idilV~-nag 105 (272)
T d1g0oa_ 90 AVKIFGKLDIVCS-NSG 105 (272)
T ss_dssp HHHHHSCCCEEEE-CCC
T ss_pred HHHHhCCCCcccc-ccc
Confidence 9877 6777777 533
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.15 E-value=0.15 Score=39.66 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=57.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
++.++|.|+++-+|+.+++.+.+.|.+|+ ..+..... ..++..++...+ +..|.+.++.+.++++
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~--~~~~~~~~----------~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~ 72 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIA--IADLVPAP----------EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGK 72 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSCCH----------HHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCchH----------HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHH
Confidence 35578889999999999999999999988 33432211 122333332323 3457789999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 73 ~~~~~~G~iDilVn-nAG~ 90 (247)
T d2ew8a1 73 QVISTFGRCDILVN-NAGI 90 (247)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 99987 6888887 5444
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.15 E-value=0.044 Score=39.79 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=61.5
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cC-ccc--c----ccHHHHHhc---cCCcEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LG-LPV--F----NSVAEAKAE---TKANAS 120 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~G-vPV--y----~Sv~ea~~~---~~~Dva 120 (182)
.+.|..+|+|+|+ |-.|...++.+...|.+.| ..+++...-.+. .| -.+ | +.+++..+. ..+|++
T Consensus 25 ~~~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~v-i~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~v 102 (176)
T d2fzwa2 25 KLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRI-IGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYS 102 (176)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEE-EEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCCCEEEEecc-hhHHHHHHHHHHHHhcCce-EEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEe
Confidence 4677888999999 6689999999999996555 455554321111 12 111 1 224444432 368999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++....+.+.+.+++..|-..+++
T Consensus 103 id~~G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 103 FECIGNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp EECSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred eecCCCHHHHHHHHHhhcCCceeEEE
Confidence 99999988888888888887666544
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=94.14 E-value=0.0069 Score=46.65 Aligned_cols=88 Identities=11% Similarity=-0.011 Sum_probs=62.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCe--------------------------EecC--cccccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGT--------------------------EHLG--LPVFNS 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~--------------------------~i~G--vPVy~S 107 (182)
+||.|-|+ ||.|+.+.+.+.+.. ++|| +--||..... .++| ++++..
T Consensus 1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~iv-aINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~ 78 (172)
T d1rm4a1 1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-VINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD 78 (172)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSSCSEEEE-EEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEE-EEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecC
Confidence 58999999 999999999877533 7888 7444431100 0123 455543
Q ss_pred --HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 108 --VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 108 --v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
+++++ ++.++|++++.+-.....+-+..-+++|++-|++ +.
T Consensus 79 ~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkVii-SA 122 (172)
T d1rm4a1 79 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI-TA 122 (172)
T ss_dssp SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEE-SS
T ss_pred CChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEe-ec
Confidence 66654 3457999999999888888888889999999887 53
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.99 E-value=0.089 Score=41.29 Aligned_cols=83 Identities=22% Similarity=0.163 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.+.++|.|+++-+|+++++.+.+.|.+|+ ..+.... +. -...+|+... -.-+..|.+.++.+.++++++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~--~~~r~~~--~~-----~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~ 75 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVV--FGDILDE--EG-----KAMAAELADA-ARYVHLDVTQPAQWKAAVDTAV 75 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHH--HH-----HHHHHHTGGG-EEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHH--HH-----HHHHHHhhCc-ceEEEeecCCHHHHHHHHHHHH
Confidence 35588889999999999999999999988 4443221 00 0112222111 1123467789999999999999
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|+ ..|+
T Consensus 76 ~~~g~idilin-nAG~ 90 (244)
T d1nffa_ 76 TAFGGLHVLVN-NAGI 90 (244)
T ss_dssp HHHSCCCEEEE-CCCC
T ss_pred HHhCCCeEEEE-CCcc
Confidence 86 6888877 4443
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=93.93 E-value=0.084 Score=41.38 Aligned_cols=79 Identities=23% Similarity=0.185 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.+.++|.|+++.+|+.+++.+.+.|.+|+.++.++. ..+ +.+... .-=+-+|.+.++.+.++++++.
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~--~~~---------~~~~~~--~~~~~~Dv~~~~~v~~~~~~~~ 71 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE--GKE---------VAEAIG--GAFFQVDLEDERERVRFVEEAA 71 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT--HHH---------HHHHHT--CEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHH---------HHHHcC--CeEEEEeCCCHHHHHHHHHHHH
Confidence 356888899999999999999999999883333322 111 111111 1113467789999999999999
Q ss_pred Hc--CCCEEEEeCCC
Q 030169 138 EA--ELDLVVCITEG 150 (182)
Q Consensus 138 e~--GIk~VV~iTeG 150 (182)
+. +|..+|+ ..|
T Consensus 72 ~~~G~iDiLVn-nAG 85 (248)
T d2d1ya1 72 YALGRVDVLVN-NAA 85 (248)
T ss_dssp HHHSCCCEEEE-CCC
T ss_pred HhcCCCCeEEE-eCc
Confidence 87 6888887 433
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.89 E-value=0.01 Score=45.64 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=63.4
Q ss_pred eEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCCe----------------E---------ec--Ccccccc--
Q 030169 60 RVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGGT----------------E---------HL--GLPVFNS-- 107 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G~----------------~---------i~--GvPVy~S-- 107 (182)
||.|-|| ||.|+.+.+.+.+. +++|| +--|+..... + ++ .++++..
T Consensus 2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vv-aINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~ 79 (169)
T d1hdgo1 2 RVAINGF-GRIGRLVYRIIYERKNPDIEVV-AINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD 79 (169)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCTTCEEE-EEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred EEEEECC-ChHHHHHHHHHHhccCCCEEEE-EeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCC
Confidence 7999999 99999999988753 38898 6444421000 0 11 3555543
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iT 148 (182)
+++++ ++.++|++++.+-.....+.+..-+++|++.|+. |
T Consensus 80 p~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkVii-S 120 (169)
T d1hdgo1 80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII-T 120 (169)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-S
T ss_pred hhhCCccccCCCEEEEecceeccccchhhhccCCCceEEE-e
Confidence 77765 3458999999999988888899999999999987 5
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=93.84 E-value=0.024 Score=42.69 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=50.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~e 135 (182)
+.++|+|.|++|..|+.+++.+.+.|.+++..+-++.+. -...+++.+.... ....|...++.+.+.+
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~---------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-- 90 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA---------QAAADSVNKRFKVNVTAAETADDASRAEAV-- 90 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH---------HHHHHHHHHHHTCCCEEEECCSHHHHHHHT--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHH---------HHHHHHHHhccchhhhhhhcccHHHHHHHh--
Confidence 357899999999999999999999999988333333221 1112222222232 3456666666655443
Q ss_pred HHHcCCCEEEEeCCCC
Q 030169 136 AMEAELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~GIk~VV~iTeG~ 151 (182)
.++..+|+ ..|+
T Consensus 91 ---~~iDilin-~Ag~ 102 (191)
T d1luaa1 91 ---KGAHFVFT-AGAI 102 (191)
T ss_dssp ---TTCSEEEE-CCCT
T ss_pred ---cCcCeeee-cCcc
Confidence 46778887 6554
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.73 E-value=0.076 Score=41.58 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=52.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
+.++|.|+++.+|+.+++.+.+.|.+|+ .++..... .-...+++ ++...+ +..|.+.++.+.+++++
T Consensus 11 KvalITGas~GIG~a~a~~la~~Ga~V~--~~~r~~~~-------l~~~~~~l-~~~g~~~~~~~~Dvt~~~~v~~~~~~ 80 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSVSHVI--CISRTQKS-------CDSVVDEI-KSFGYESSGYAGDVSKKEEISEVINK 80 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEE--EEESSHHH-------HHHHHHHH-HTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEE--EEECCHHH-------HHHHHHHH-HhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 3355669999999999999999999888 44433211 11112222 222223 34577899999999999
Q ss_pred HHHc--CCCEEEE
Q 030169 136 AMEA--ELDLVVC 146 (182)
Q Consensus 136 Aie~--GIk~VV~ 146 (182)
+.+. ++..+|+
T Consensus 81 ~~~~~g~iDilvn 93 (251)
T d2c07a1 81 ILTEHKNVDILVN 93 (251)
T ss_dssp HHHHCSCCCEEEE
T ss_pred HHHhcCCceeeee
Confidence 9877 5777776
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=93.71 E-value=0.0088 Score=46.09 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=64.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe-------------------------EecC--cccccc--H
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT-------------------------EHLG--LPVFNS--V 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~-------------------------~i~G--vPVy~S--v 108 (182)
.||.|-|+ ||.|+.+.+.+.+. +++++ +--+|..... .++| ++++.. +
T Consensus 2 ikIgINGf-GRIGR~v~R~~l~~~~~~iv-aINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p 79 (171)
T d3cmco1 2 VKVGINGF-GRIGRNVFRAALKNPDIEVV-AVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP 79 (171)
T ss_dssp EEEEEESC-SHHHHHHHHHHTTCTTEEEE-EEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred eEEEEECC-CHHHHHHHHHHhhCCCcEEE-EEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCH
Confidence 48999999 99999999988865 48888 6444432110 0122 445444 6
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iT 148 (182)
++++ ++.++|++++.+-.....+-+..-+++|.+.|+. |
T Consensus 80 ~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkVii-S 119 (171)
T d3cmco1 80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII-S 119 (171)
T ss_dssp GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-S
T ss_pred HHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEE-e
Confidence 7765 4568999999999998888888889999999997 5
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.70 E-value=0.014 Score=41.17 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=29.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
|||+|+|.+|.||+.+++.+.+.|.+|++.+-+|.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 68999987799999999999999999884454443
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=93.66 E-value=0.13 Score=41.31 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=27.4
Q ss_pred CceEEEEccCCCCchhhhHHHHH-hCCceEEeecc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVT 91 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVd 91 (182)
.|||+|.|++|-.|+.+++.+++ .|.+|+ ++|
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~--~~D 34 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVV--IVD 34 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEE--EEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEE--EEe
Confidence 68999999999999999998875 568888 654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.54 E-value=0.081 Score=41.68 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=55.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+.+.++|.|+++..|+++++.+.+.|.+|+ .++..... .-...+++.+ ...+ ...|.+.++.+.+++
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~--~~~r~~~~-------l~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~ 76 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIH--TCARNEYE-------LNECLSKWQK-KGFQVTGSVCDASLRPEREKLM 76 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-------HHHHHHHHHh-cCCceEEEeccCCCHHHHHHHH
Confidence 356688889999999999999999999988 45543311 1112233222 1223 334677889999999
Q ss_pred HHHHHc--C-CCEEEE
Q 030169 134 MEAMEA--E-LDLVVC 146 (182)
Q Consensus 134 ~eAie~--G-Ik~VV~ 146 (182)
+++.+. | +..+|+
T Consensus 77 ~~~~~~~~g~idilvn 92 (259)
T d1xq1a_ 77 QTVSSMFGGKLDILIN 92 (259)
T ss_dssp HHHHHHHTTCCSEEEE
T ss_pred HHHHHHhCCCcccccc
Confidence 998875 4 788887
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.45 E-value=0.11 Score=38.09 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=60.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeEe----c-----Ccccc---ccHHHHHhccCCcEEEEee
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTEH----L-----GLPVF---NSVAEAKAETKANASVIYV 124 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~i----~-----GvPVy---~Sv~ea~~~~~~DvaVdfV 124 (182)
.||.|+|++|+.|+.++-.+...+ -+++ .+|..+...+. + ..+.+ .+..|..+ ++|++|+..
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elv--LiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~--~aDivVita 76 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLT--LYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLK--GCDVVVIPA 76 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEE--EEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHT--TCSEEEECC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEE--EEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhC--CCCEEEECC
Confidence 489999999999999988777766 4566 66654311111 1 12222 22455566 799999874
Q ss_pred C----------------hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030169 125 P----------------PPFAAAAIMEAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 125 p----------------p~av~~a~~eAie~GIk~VV~iTeG~~~eD~ 156 (182)
. ...+.+.+....+++.+.++++.+. |+.-+
T Consensus 77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN-PvD~~ 123 (144)
T d1mlda1 77 GVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN-PVNST 123 (144)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS-CHHHH
T ss_pred CcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC-chhhh
Confidence 4 3456788888888888887765443 55533
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.022 Score=43.01 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=61.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeE--------------e-----------------cCcccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTE--------------H-----------------LGLPVF 105 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~--------------i-----------------~GvPVy 105 (182)
.||.|.|.||.-|+...+.+.++. ++|+ +- .-++.-+. + .++++|
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~-~L-sa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~ 79 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVV-AL-VAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVL 79 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTEEEE-EE-EESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEE
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCcEEE-EE-EecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccc
Confidence 469999999999999999888653 8888 53 22221110 0 145666
Q ss_pred cc---HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 106 NS---VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 106 ~S---v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
.. +.++....++|+++-...-.+....+.+|+++|.++.++
T Consensus 80 ~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA 123 (151)
T d1q0qa2 80 SGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA 123 (151)
T ss_dssp ESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred cChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence 44 444444457899999999999999999999999876554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=93.35 E-value=0.041 Score=43.11 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc---CCcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~---~~DvaVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++.+|+.+++.+.+.|.+|+ ..+.... .++++.++. -.-+..|.+.++.+.++++
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~~Vv--~~~r~~~-----------~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 70 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGAKVI--GTATSEN-----------GAQAISDYLGANGKGLMLNVTDPASIESVLE 70 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEE--EEESSHH-----------HHHHHHHHHGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEE--EEeCCHH-----------HHHHHHHHhCCCCcEEEEEecCHHHhhhhhh
Confidence 35577779999999999999999999988 4443321 122222211 1235567789999999999
Q ss_pred HHHHc--CCCEEEEe
Q 030169 135 EAMEA--ELDLVVCI 147 (182)
Q Consensus 135 eAie~--GIk~VV~i 147 (182)
++.+. ++..+|+-
T Consensus 71 ~~~~~~g~iDilVnn 85 (243)
T d1q7ba_ 71 KIRAEFGEVDILVNN 85 (243)
T ss_dssp HHHHHTCSCSEEEEC
T ss_pred hhhcccCCcceehhh
Confidence 99987 68888873
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.28 E-value=0.035 Score=43.95 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=56.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC---Cc---EEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK---AN---ASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~---~D---vaVdfVpp~av~~ 131 (182)
.+.++|.|+++.+|+.+++.+.+.|.+|+ .++..... ...+.+.+++.. .+ +..|.+.++.+.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~--l~~r~~~~--------l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~ 74 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGANVT--ITGRSSER--------LEETRQIILKSGVSEKQVNSVVADVTTEDGQDQ 74 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--------HHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCCEEE--EEECCHHH--------HHHHHHHHHhcCCCCCceEEEEccCCCHHHHHH
Confidence 35688889999999999999999999988 44433211 011122122111 12 4457789999999
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030169 132 AIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~ 151 (182)
+++++.+. ++..+|+ ..|.
T Consensus 75 ~~~~~~~~~g~iDilvn-nAG~ 95 (272)
T d1xkqa_ 75 IINSTLKQFGKIDVLVN-NAGA 95 (272)
T ss_dssp HHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHHhCCceEEEe-CCcc
Confidence 99999987 6888887 5444
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.21 E-value=0.034 Score=40.49 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=57.7
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEe---cCc--cc-ccc---HHHHHhc---cCCcEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEH---LGL--PV-FNS---VAEAKAE---TKANAS 120 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i---~Gv--PV-y~S---v~ea~~~---~~~Dva 120 (182)
.+.+..+|+|+|++|-+|...++.+...| .+|+ .++++....+. .|. -+ +++ .++..+. ..+|++
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~--~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~v 101 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATII--GVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAV 101 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEE--EEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCCCEEEEEeccccceeeeeeccccccccccc--ccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhh
Confidence 45677889999999999999999999888 4666 44443311111 121 11 121 4444432 258999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCE
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDL 143 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~ 143 (182)
++++....+.+.+.++++.|=+.
T Consensus 102 id~~g~~~~~~~a~~~l~~~G~i 124 (170)
T d1jvba2 102 IDLNNSEKTLSVYPKALAKQGKY 124 (170)
T ss_dssp EESCCCHHHHTTGGGGEEEEEEE
T ss_pred hcccccchHHHhhhhhcccCCEE
Confidence 99999888877777777766333
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=93.12 E-value=0.15 Score=39.86 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++-+|+.+++.+.+.|.+|+ ..+... +.++++.++..- -+..|.+.++.+.++++
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 72 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVA--FSDINE-----------AAGQQLAAELGERSMFVRHDVSSEADWTLVMA 72 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EECSCH-----------HHHHHHHHHHCTTEEEECCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCH-----------HHHHHHHHHhCCCeEEEEeecCCHHHHHHHHH
Confidence 45678889999999999999999999988 444322 112333332222 23346778999999999
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..+|+ ..|
T Consensus 73 ~~~~~~g~iDilVn-nAG 89 (253)
T d1hxha_ 73 AVQRRLGTLNVLVN-NAG 89 (253)
T ss_dssp HHHHHHCSCCEEEE-CCC
T ss_pred HHHHHhCCCCeEEe-ccc
Confidence 99877 6878877 544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=93.08 E-value=0.14 Score=37.45 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=62.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCe-----Ee-------cCcccccc-HHHHHhccCCcEEE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGT-----EH-------LGLPVFNS-VAEAKAETKANASV 121 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~-----~i-------~GvPVy~S-v~ea~~~~~~DvaV 121 (182)
+++||.|+|+ |+.|..++-.+...| -||+ .+|....-- ++ ...-++.. .++ .+ ++|+++
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elv--L~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~--~adivv 77 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFV--IVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CK--DADLVV 77 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEE--EECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GT--TCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEE--EeecccchhHHHHHHHhccccccCCceEeeccHHH-hc--cccEEE
Confidence 4679999997 999999988888777 4677 777654100 00 01222222 333 34 789999
Q ss_pred EeeCh----------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030169 122 IYVPP----------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 122 dfVpp----------------~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l 159 (182)
+.... ..+.+.++...+.+.+.++++.+. |..-+..+
T Consensus 78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN-Pvdv~t~~ 130 (146)
T d1ez4a1 78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN-PVDILTYA 130 (146)
T ss_dssp ECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS-SHHHHHHH
T ss_pred EecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC-ccHHHHHH
Confidence 97532 245577778888888888877775 66554433
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.11 Score=41.87 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=57.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc----cCCc---EEEEeeChHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE----TKAN---ASVIYVPPPFA 129 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~----~~~D---vaVdfVpp~av 129 (182)
+...++|.|+++.+|+.+++.+.+.|.+|+ .++..... .-...+|+.++ .+.+ +..|.+.++.+
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~Ga~Vv--i~~r~~~~-------l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v 81 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLELGSNVV--IASRKLER-------LKSAADELQANLPPTKQARVIPIQCNIRNEEEV 81 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-------HHHHHHHHHhhhccccCceEEEEeccCCCHHHH
Confidence 346688889999999999999999999988 44433211 11112232221 1223 34577889999
Q ss_pred HHHHHHHHHc--CCCEEEEeCCC
Q 030169 130 AAAIMEAMEA--ELDLVVCITEG 150 (182)
Q Consensus 130 ~~a~~eAie~--GIk~VV~iTeG 150 (182)
.++++++.+. ++..+|+ ..|
T Consensus 82 ~~~~~~~~~~~G~iDiLVn-nAg 103 (297)
T d1yxma1 82 NNLVKSTLDTFGKINFLVN-NGG 103 (297)
T ss_dssp HHHHHHHHHHHSCCCEEEE-CCC
T ss_pred HHHHHHHHHHhCCeEEEEe-ecc
Confidence 9999999876 6888887 444
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.03 E-value=0.031 Score=41.41 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=53.3
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCcc---cccc---HHHHH---hccCCcEEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGLP---VFNS---VAEAK---AETKANASV 121 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~GvP---Vy~S---v~ea~---~~~~~DvaV 121 (182)
.+.+..+|+|.|++|..|+...+..+..|.+++ +.+.... ..+. .|.. .|++ .+++. ....+|+++
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi-~~~~~~~-~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~ 103 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVV-GAAGSDE-KIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYF 103 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEESSHH-HHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEE-EeCCCHH-HHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeE
Confidence 457788899999999999999999999999999 6553321 0110 1111 1111 33333 223689999
Q ss_pred EeeChHHHHHHHHHHHHcC
Q 030169 122 IYVPPPFAAAAIMEAMEAE 140 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~G 140 (182)
|.+..+... ....++..+
T Consensus 104 D~vG~~~~~-~~~~~l~~~ 121 (182)
T d1v3va2 104 DNVGGEFLN-TVLSQMKDF 121 (182)
T ss_dssp ESSCHHHHH-HHGGGEEEE
T ss_pred EecCchhhh-hhhhhccCC
Confidence 999866544 444444443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.01 E-value=0.065 Score=42.14 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++.+|+.+++.+.+.|.+|+ .++..... .+.+.+.+++...++ ..|.+.++.+.++++
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~--~~~r~~~~--------l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 74 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIA--LLDMNREA--------LEKAEASVREKGVEARSYVCDVTSEEAVIGTVD 74 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--------HHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--------HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 45688889999999999999999999988 44433211 112222223223333 356678999999999
Q ss_pred HHHHc--CCCEEEE
Q 030169 135 EAMEA--ELDLVVC 146 (182)
Q Consensus 135 eAie~--GIk~VV~ 146 (182)
++.+. ++..+|+
T Consensus 75 ~~~~~~g~iDilVn 88 (260)
T d1zema1 75 SVVRDFGKIDFLFN 88 (260)
T ss_dssp HHHHHHSCCCEEEE
T ss_pred HHHHHhCCCCeehh
Confidence 99987 6888886
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.06 Score=40.97 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=64.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------------------------------ecCccccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------------------------------HLGLPVFN 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------------------------------i~GvPVy~ 106 (182)
.||.|+|+ |.||+.++..+...|.+++ .+|+....-+ ...+....
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~--l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 81 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVV--LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 81 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEE--EEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence 57999999 9999999999999999988 5555431100 01345666
Q ss_pred cHHHHHhccCCcEEEEeeChHHH-HHHHHHHHHcCCCE--EEE-eCCCCCHHHHHH
Q 030169 107 SVAEAKAETKANASVIYVPPPFA-AAAIMEAMEAELDL--VVC-ITEGIPQHDMVI 158 (182)
Q Consensus 107 Sv~ea~~~~~~DvaVdfVpp~av-~~a~~eAie~GIk~--VV~-iTeG~~~eD~~~ 158 (182)
+++++.. ++|.++-.+|.+.- +.-+..-++.-++. |++ -|.+++..++..
T Consensus 82 d~~~a~~--~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~ 135 (192)
T d1f0ya2 82 DAASVVH--STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN 135 (192)
T ss_dssp CHHHHTT--SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT
T ss_pred hhHhhhc--ccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh
Confidence 7778777 89999999998755 34444555553332 332 267788776654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.028 Score=41.13 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=51.7
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEee-ccCCCCCeEe---cC-cccc--cc--H-HHHHh---ccCCcEEE
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGG-VTPKKGGTEH---LG-LPVF--NS--V-AEAKA---ETKANASV 121 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~Ag-Vdp~~~G~~i---~G-vPVy--~S--v-~ea~~---~~~~DvaV 121 (182)
+.+..+|+|.|+.|..|...++..+..|.+++ +- .++.+ .+. .| -.|+ ++ + +++.+ ...+|+++
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi-~~~~s~~k--~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~ 102 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLI-GTVGTAQK--AQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVY 102 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEE-EEESSHHH--HHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEe-ecccchHH--HHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 45677899999999999999999999999998 43 22221 110 01 1122 22 2 33322 23679999
Q ss_pred EeeChHHHHHHHHHHHHcC
Q 030169 122 IYVPPPFAAAAIMEAMEAE 140 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~G 140 (182)
+++..+...+..+..-..|
T Consensus 103 d~~g~~~~~~~~~~l~~~G 121 (179)
T d1qora2 103 DSVGRDTWERSLDCLQRRG 121 (179)
T ss_dssp ECSCGGGHHHHHHTEEEEE
T ss_pred eCccHHHHHHHHHHHhcCC
Confidence 9998776555444333334
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=92.64 E-value=0.19 Score=36.98 Aligned_cols=92 Identities=14% Similarity=0.041 Sum_probs=61.1
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCC--eEec---------Ccc--c--cccHHHHHhccCC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGG--TEHL---------GLP--V--FNSVAEAKAETKA 117 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G--~~i~---------GvP--V--y~Sv~ea~~~~~~ 117 (182)
++.+.+||.|+|+ |+-|+.++-.+...+ .+++ .+|.+.+- .+.. +.+ + -.+.+++.+ +.
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~--L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~a 77 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVV--LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT--GA 77 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE--EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT--TC
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCceEE--EEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhc--CC
Confidence 4567899999998 999998877666666 4777 77765421 0110 111 1 122556667 78
Q ss_pred cEEEEeeC---------------------hHHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 118 NASVIYVP---------------------PPFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 118 DvaVdfVp---------------------p~av~~a~~eAie~GIk~VV~iTeG 150 (182)
|++++... ...+.++++...+.+.+.++++.+.
T Consensus 78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN 131 (154)
T d1pzga1 78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 131 (154)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99998662 2257788888888898888776553
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=92.56 E-value=0.11 Score=41.18 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCc--eEEeeccCC-CCCeEe-------cCccc-------cccHHHHHhccCCcEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTK--MVVGGVTPK-KGGTEH-------LGLPV-------FNSVAEAKAETKANAS 120 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~--IV~AgVdp~-~~G~~i-------~GvPV-------y~Sv~ea~~~~~~Dva 120 (182)
.+||+|.|++|-.|+.+++.+++.|.+ ++ ++|+- ..+... .+++. ++.+.++.+ .+|.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~--~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~--~~~~v 77 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVT--VLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAI 77 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEE--EEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEE--EEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHh--hhhhh
Confidence 478999999999999999999988744 55 45432 111100 12222 233555555 67777
Q ss_pred EEeeChH------------------HHHHHHHHHHHcCCCEEEEeC
Q 030169 121 VIYVPPP------------------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 121 VdfVpp~------------------av~~a~~eAie~GIk~VV~iT 148 (182)
+.+.-.. ....+++.|...+++.|+..|
T Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss 123 (346)
T d1oc2a_ 78 VHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 123 (346)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred hhhhhcccccchhhCcccceeeehHhHHhhhhhhcccccccccccc
Confidence 6664221 234456778888988877644
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.54 E-value=0.087 Score=41.38 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
.+.++|.|+++-.|+.+++.+.+.|.+|+ .++..... . -...+++.....+. +..|.+.++.+.++++++
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~--i~~r~~~~--~-----~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVV--IADIADDH--G-----QKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--H-----HHHHHHhcCCCceEEEEccCCCHHHHHHHHHHH
Confidence 45688889999999999999999999988 44443211 0 01112211111111 345778999999999999
Q ss_pred HHc--CCCEEEE
Q 030169 137 MEA--ELDLVVC 146 (182)
Q Consensus 137 ie~--GIk~VV~ 146 (182)
.+. ++..+|+
T Consensus 77 ~~~~g~iD~lVn 88 (268)
T d2bgka1 77 IAKHGKLDIMFG 88 (268)
T ss_dssp HHHHSCCCEEEE
T ss_pred HHHcCCcceecc
Confidence 887 7888887
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.1 Score=41.03 Aligned_cols=83 Identities=14% Similarity=0.049 Sum_probs=57.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++..|+++++.+.+.|.+|+ ..+..... .-...+|+.+ ...+ +..|.+.++.+.++++
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~--~~~r~~~~-------~~~~~~~l~~-~g~~~~~~~~Dvs~~~~~~~~~~ 80 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVV--VSDINADA-------ANHVVDEIQQ-LGGQAFACRCDITSEQELSALAD 80 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEE--EEESCHHH-------HHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH-------HHHHHHHHHH-cCCcEEEEEccCCCHHHHHHHHH
Confidence 45688889999999999999999999988 44432211 1112233222 2222 3567788999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 81 ~~~~~~g~iDilvn-nAG~ 98 (255)
T d1fmca_ 81 FAISKLGKVDILVN-NAGG 98 (255)
T ss_dssp HHHHHHSSCCEEEE-CCCC
T ss_pred HHHHHcCCCCEeee-CCcC
Confidence 99987 6888887 5554
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.50 E-value=0.054 Score=39.98 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=48.2
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe--cC---cccccc-HHHHHhccCCcEEEEeeChH
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH--LG---LPVFNS-VAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i--~G---vPVy~S-v~ea~~~~~~DvaVdfVpp~ 127 (182)
.+.|..+|+|.|++|..|+..++.++..|.+++ +.+.....-+.. .| +--|.+ ..+......+|++++.+.+.
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi-~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~~ 102 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVL-AAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKE 102 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEE-EEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCTT
T ss_pred CCCCCCEEEEEeccccchhhhhhhhcccccccc-cccccccccccccccccceeeehhhhhhhhhccccccccccccchh
Confidence 357888899999999999999999999999988 544322101110 12 222444 33333334789999988743
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=0.43 Score=33.36 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=30.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG 95 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~ 95 (182)
.+||.|.|. |.+|++++....+.|.+++ -.||...
T Consensus 11 ~~kigIlGg-GQL~rMla~aA~~lG~~v~--v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGS-GELGKEVAIECQRLGVEVI--AVDRYAD 45 (111)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHTTTCEEE--EEESSTT
T ss_pred CCEEEEEeC-CHHHHHHHHHHHHCCCEEE--EEcCCCC
Confidence 368999998 9999999999999999888 6777663
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=92.28 E-value=0.1 Score=40.68 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=55.0
Q ss_pred eE-EEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 60 RV-ICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 60 rV-iVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
|| +|.|+++-.|+.+++.+.+.|.+|+ ..+..... . -...+++.+ ...+ +..|.+.++.+.+++++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~--~~~r~~~~--l-----~~~~~~i~~-~g~~~~~~~~Dv~~~~~v~~~~~~ 71 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVA--IADYNDAT--A-----KAVASEINQ-AGGHAVAVKVDVSDRDQVFAAVEQ 71 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEE--EEECCHHH--H-----HHHHHHHHh-cCCcEEEEEeeCCCHHHHHHHHHH
Confidence 55 6779999999999999999999988 44433211 1 112233222 2222 34688899999999999
Q ss_pred HHHc--CCCEEEEeCCC
Q 030169 136 AMEA--ELDLVVCITEG 150 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG 150 (182)
+.+. ++..+|+ ..|
T Consensus 72 ~~~~~g~iDilVn-nAG 87 (255)
T d1gega_ 72 ARKTLGGFDVIVN-NAG 87 (255)
T ss_dssp HHHHTTCCCEEEE-CCC
T ss_pred HHHHhCCccEEEe-ccc
Confidence 9986 5888887 444
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=92.19 E-value=0.08 Score=41.34 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=55.1
Q ss_pred ceE-EEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 59 TRV-ICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trV-iVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.|| +|.|+++-+|+++++.+.+.|.+|+ .++..... .-...+++ ++...+ ...|.+.++.+.++++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~--i~~r~~~~-------l~~~~~~l-~~~g~~~~~~~~Dvs~~~~v~~~~~ 71 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVF--VCARGEEG-------LRTTLKEL-REAGVEADGRTCDVRSVPEIEALVA 71 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHH-HHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-------HHHHHHHH-HhcCCcEEEEEeecCCHHHHHHHHH
Confidence 355 6679999999999999999999988 44443211 11112232 222333 3457789999999999
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..+|+ ..|
T Consensus 72 ~~~~~~g~iDilVn-nAG 88 (257)
T d2rhca1 72 AVVERYGPVDVLVN-NAG 88 (257)
T ss_dssp HHHHHTCSCSEEEE-CCC
T ss_pred HHHHHhCCCCEEEe-ccc
Confidence 99987 5888887 444
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=92.12 E-value=0.051 Score=40.74 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=61.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE--------------e---------------cCccccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE--------------H---------------LGLPVFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~--------------i---------------~GvPVy~ 106 (182)
..+|+|.|+||..|+...+.+.++ .++|+ |- .-+..-+. + ..+.++.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~-~l-sa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~ 79 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVI-AL-TANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAA 79 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEE-EE-EESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEE-EE-EeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhccccccc
Confidence 378999999999999999988765 38888 53 22211100 0 1355555
Q ss_pred cHHHHH--hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK--AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~--~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
..+++. ...++|+++..+.-.+....+..|+++|.++.++
T Consensus 80 g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA 121 (150)
T d1r0ka2 80 GADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA 121 (150)
T ss_dssp SHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred CccchheecccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence 544432 2347899999999999999999999999876544
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.06 E-value=0.21 Score=38.22 Aligned_cols=29 Identities=17% Similarity=0.089 Sum_probs=26.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.++|+|.|+++.+|+.+++.+.+.|.+|+
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~~V~ 30 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNWWVA 30 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence 46799999999999999999999999888
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=91.99 E-value=0.25 Score=38.79 Aligned_cols=79 Identities=20% Similarity=0.096 Sum_probs=55.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--C-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~-DvaVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++.+|+.+++.+.+.|.+|+ .++.... .+++..++.. + =...|.+.++.+.++++
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 71 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGARVV--LADVLDE-----------EGAATARELGDAARYQHLDVTIEEDWQRVVA 71 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHTTGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEE--EEECCHH-----------HHHHHHHHhCCceEEEEcccCCHHHHHHHHH
Confidence 45688999999999999999999999988 4443221 1223222211 1 23456788999999999
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..+|+ ..|
T Consensus 72 ~~~~~~g~iDilVn-nAg 88 (254)
T d1hdca_ 72 YAREEFGSVDGLVN-NAG 88 (254)
T ss_dssp HHHHHHSCCCEEEE-CCC
T ss_pred HHHHHcCCccEEEe-cCc
Confidence 99876 6887777 434
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=91.99 E-value=0.1 Score=41.06 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.+.++|.|++|..|+.+++.+.+.|.+|+ .++..... .=...+++.++...+ +..|...++.+.+.+.
T Consensus 25 gK~alITGas~GIG~aiA~~la~~Ga~Vi--i~~r~~~~-------l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~ 95 (294)
T d1w6ua_ 25 GKVAFITGGGTGLGKGMTTLLSSLGAQCV--IASRKMDV-------LKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 95 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEE--EEECCHHH-------HHHHHHHHHHhcCCceEEEEecccChHHHHHHhh
Confidence 35688889999999999999999999998 44443211 112233443322222 3357788899998888
Q ss_pred HHHHc--CCCEEEEe
Q 030169 135 EAMEA--ELDLVVCI 147 (182)
Q Consensus 135 eAie~--GIk~VV~i 147 (182)
.+.+. ++..+|+.
T Consensus 96 ~~~~~~g~iDilvnn 110 (294)
T d1w6ua_ 96 ELIKVAGHPNIVINN 110 (294)
T ss_dssp HHHHHTCSCSEEEEC
T ss_pred hhhhhccccchhhhh
Confidence 88876 57777773
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.94 E-value=0.14 Score=38.10 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=62.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e--cCcccccc------------------HHHHHhccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H--LGLPVFNS------------------VAEAKAETKA 117 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i--~GvPVy~S------------------v~ea~~~~~~ 117 (182)
|||+|+|. |..|..++-. .+.|.+++ |+|....--+ + +-.|+++. ..+... ++
T Consensus 1 MkI~ViGl-G~vGl~~a~~-~a~g~~V~--g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 74 (196)
T d1dlja2 1 MKIAVAGS-GYVGLSLGVL-LSLQNEVT--IVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--EA 74 (196)
T ss_dssp CEEEEECC-SHHHHHHHHH-HTTTSEEE--EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--HC
T ss_pred CEEEEECC-ChhHHHHHHH-HHCCCcEE--EEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhh--cc
Confidence 68999997 9999988754 46799999 7776641100 0 01233222 222223 57
Q ss_pred cEEEEeeChH-----------HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 118 NASVIYVPPP-----------FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 118 DvaVdfVpp~-----------av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
|++++.||-. .+..+........-..++++.+=++.....++...-...
T Consensus 75 ~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~ 134 (196)
T d1dlja2 75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTD 134 (196)
T ss_dssp SEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred ccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchh
Confidence 8888887643 334445555555545555567778888887776655443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=91.93 E-value=0.11 Score=40.68 Aligned_cols=79 Identities=13% Similarity=-0.043 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCC-cEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~-DvaVdfVpp~av~~a~~e 135 (182)
.+.++|.|+++.+|+++++.+.+.|.+|+ .++..... . ..+.+.+.. .++ =+..|.+.++.+.+++++
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVM--ITGRHSDV--G------EKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H------HHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHHHhCCCCcEEEEEccCCCHHHHHHHHHH
Confidence 35578889999999999999999999988 44432211 0 111221211 122 134578889999999999
Q ss_pred HHHc--CCCEEEE
Q 030169 136 AMEA--ELDLVVC 146 (182)
Q Consensus 136 Aie~--GIk~VV~ 146 (182)
+.+. ++..+|+
T Consensus 76 ~~~~~G~iDiLVn 88 (251)
T d1zk4a1 76 TEKAFGPVSTLVN 88 (251)
T ss_dssp HHHHHSSCCEEEE
T ss_pred HHHHhCCceEEEe
Confidence 9986 6888887
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.27 Score=41.95 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=58.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeE------------e----------------cCcc---cc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTE------------H----------------LGLP---VF 105 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~------------i----------------~GvP---Vy 105 (182)
+.||+|+|+ |..|..+++.+...|+ +|. -+|+.....+ + .++. ..
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~--lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGFRQIH--VIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTCCCEE--EECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCCCeEE--EEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 478999999 8899999999999883 444 5555443321 0 0222 11
Q ss_pred ccH----HHHHhccCCcEEEEeeChHHHHHHHHHHH-------------HcCCCEEEEeCCCC
Q 030169 106 NSV----AEAKAETKANASVIYVPPPFAAAAIMEAM-------------EAELDLVVCITEGI 151 (182)
Q Consensus 106 ~Sv----~ea~~~~~~DvaVdfVpp~av~~a~~eAi-------------e~GIk~VV~iTeG~ 151 (182)
..+ .+..+ ++|++++.+....+...+..+. ++++|.|.+-|+|+
T Consensus 114 ~~i~~~~~~~~~--~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~ 174 (426)
T d1yovb1 114 NKIQDFNDTFYR--QFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGF 174 (426)
T ss_dssp SCGGGBCHHHHT--TCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETT
T ss_pred ccccchHHHHHH--hcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeee
Confidence 122 33344 7999999998877776665543 56888887756554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=91.91 E-value=0.026 Score=41.82 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=54.9
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEe---cCc-ccc----ccHHH----HHh---ccCCc
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEH---LGL-PVF----NSVAE----AKA---ETKAN 118 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i---~Gv-PVy----~Sv~e----a~~---~~~~D 118 (182)
+.+..+|+|+|+ |..|...++..+..|. +|+ .+++...-.+. .|. -++ .+..+ +.+ ...+|
T Consensus 26 ~~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi--~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~D 102 (182)
T d1vj0a2 26 SFAGKTVVIQGA-GPLGLFGVVIARSLGAENVI--VIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGAD 102 (182)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBSEEE--EEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred CCCCCEEEEECC-Cccchhheeccccccccccc--ccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCce
Confidence 455678999998 9999999999999996 677 44443211111 111 111 12222 222 23589
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEE
Q 030169 119 ASVIYVPPPFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 119 vaVdfVpp~av~~a~~eAie~GIk~V 144 (182)
++++++....+.+.+.+++..|=+.+
T Consensus 103 vvid~vG~~~~~~~a~~~l~~~G~iv 128 (182)
T d1vj0a2 103 FILEATGDSRALLEGSELLRRGGFYS 128 (182)
T ss_dssp EEEECSSCTTHHHHHHHHEEEEEEEE
T ss_pred EEeecCCchhHHHHHHHHhcCCCEEE
Confidence 99999987777777777777764443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.88 E-value=0.1 Score=38.83 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=47.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-----ec--Cccccc--cHHHHHhc---cCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-----HL--GLPVFN--SVAEAKAE---TKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-----i~--GvPVy~--Sv~ea~~~---~~~DvaVdfVpp 126 (182)
..|+|.|++|-.|+..++.++..|.+.| .++........ .. .+=-|+ ++.+.+++ ..+|+++|.+-.
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~v-i~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg 110 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRV-VGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGG 110 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEE-EEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcce-ecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCCc
Confidence 4599999999999999999999997644 34332210100 00 011111 13333322 258999999986
Q ss_pred HHHHHHHHHHHHcCCCEE
Q 030169 127 PFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~V 144 (182)
+.. +....++..+=+.+
T Consensus 111 ~~~-~~~~~~l~~~G~iv 127 (187)
T d1vj1a2 111 DIS-NTVISQMNENSHII 127 (187)
T ss_dssp HHH-HHHHTTEEEEEEEE
T ss_pred hhH-HHHhhhccccccEE
Confidence 544 33344444443333
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.77 E-value=0.15 Score=40.01 Aligned_cols=82 Identities=9% Similarity=0.086 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
.+.++|.|+++.+|+++++.+.+.|.+|+ ..+..... .-...+++.+ ...++ ..|.+.++.+.++++
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~--~~~r~~~~-------l~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~ 77 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVY--TCSRNQKE-------LNDCLTQWRS-KGFKVEASVCDLSSRSERQELMN 77 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-------HHHHHHHHHh-cCCCceEEEeeCCCHHHHHHHHH
Confidence 45688889999999999999999999988 44443211 1112333322 12222 356778999999999
Q ss_pred HHHHc-C--CCEEEEeCCC
Q 030169 135 EAMEA-E--LDLVVCITEG 150 (182)
Q Consensus 135 eAie~-G--Ik~VV~iTeG 150 (182)
++.+. | +..+|+ ..|
T Consensus 78 ~~~~~~~~~idilvn-nAG 95 (259)
T d2ae2a_ 78 TVANHFHGKLNILVN-NAG 95 (259)
T ss_dssp HHHHHTTTCCCEEEE-CCC
T ss_pred HHHHHhCCCceEEEE-CCc
Confidence 98875 3 778887 544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.76 E-value=0.027 Score=41.26 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=53.9
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cC-cccccc--HHHHHh-ccCCcEEEEeeCh
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LG-LPVFNS--VAEAKA-ETKANASVIYVPP 126 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~G-vPVy~S--v~ea~~-~~~~DvaVdfVpp 126 (182)
.+.+..+|+|.|+ |-.|...++.++.+|.++| + ++......+. .| --++++ ..+... ...+|++++++..
T Consensus 27 ~~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i-~-~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~ 103 (168)
T d1uufa2 27 QAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVV-A-FTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA 103 (168)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEE-E-EESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCCCCEEEEecc-chHHHHHHHHhhcccccch-h-hccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec
Confidence 4678888999998 9999999999999998888 4 4443322221 12 223332 222221 2368999999986
Q ss_pred HHHHHHHHHHHHcC
Q 030169 127 PFAAAAIMEAMEAE 140 (182)
Q Consensus 127 ~av~~a~~eAie~G 140 (182)
....+....++..+
T Consensus 104 ~~~~~~~~~~l~~~ 117 (168)
T d1uufa2 104 PHNLDDFTTLLKRD 117 (168)
T ss_dssp CCCHHHHHTTEEEE
T ss_pred chhHHHHHHHHhcC
Confidence 65555555555554
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=91.69 E-value=0.04 Score=42.91 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=50.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..+|+|||+ |+.|+.+++.+.+.|.+|++..+|+..... ...|.++.+ .+|+.. .++|+.+-.--.....+ +.+
T Consensus 27 gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~-~~~~~~-~~~DI~iPcA~~~~I~~--~~a 101 (201)
T d1c1da1 27 GLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVA-LEDVLS-TPCDVFAPCAMGGVITT--EVA 101 (201)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECC-GGGGGG-CCCSEEEECSCSCCBCH--HHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccC-cccccc-ccceeeecccccccccH--HHH
Confidence 467999999 999999999999999999844444432110 012344332 355544 37887663222111111 111
Q ss_pred HHcCCCEEEEeCCCC
Q 030169 137 MEAELDLVVCITEGI 151 (182)
Q Consensus 137 ie~GIk~VV~iTeG~ 151 (182)
-.-+.+.|+. ..+-
T Consensus 102 ~~i~ak~i~e-~AN~ 115 (201)
T d1c1da1 102 RTLDCSVVAG-AANN 115 (201)
T ss_dssp HHCCCSEECC-SCTT
T ss_pred hhhhhheeec-cCCC
Confidence 2236677776 4443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.50 E-value=0.16 Score=39.66 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc---EEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN---ASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D---vaVdfVpp~av~~a 132 (182)
++.++|.|+++-.|+.+++.+.+.|.+|+ .++.+... . =...+|+.+.. ..+ +..|.+.++.+.++
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~--~~~r~~~~--l-----~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~ 75 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVT--ITGRHAER--L-----EETRQQILAAGVSEQNVNSVVADVTTDAGQDEI 75 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H-----HHHHHHHHhcCCCcCceEEEEccCCCHHHHHHH
Confidence 34577779999999999999999999988 44443211 0 01122222211 112 34578899999999
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
++++.+. ++..+|+ ..|+
T Consensus 76 ~~~~~~~~g~iDilvn-nAG~ 95 (264)
T d1spxa_ 76 LSTTLGKFGKLDILVN-NAGA 95 (264)
T ss_dssp HHHHHHHHSCCCEEEE-CCC-
T ss_pred HHHHHHHhCCCCEeec-cccc
Confidence 9999987 6888887 5443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.35 E-value=0.048 Score=40.23 Aligned_cols=90 Identities=19% Similarity=0.117 Sum_probs=58.1
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCc-ccc----ccHHHHHhc---cCCcEEEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGL-PVF----NSVAEAKAE---TKANASVI 122 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~Gv-PVy----~Sv~ea~~~---~~~DvaVd 122 (182)
.+.+..+|+|.|+ |-.|...++.++..|.+.+ ..+++...-.+. .|. .++ +++.|.+++ ..+|++++
T Consensus 25 ~~~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v-~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid 102 (174)
T d1f8fa2 25 KVTPASSFVTWGA-GAVGLSALLAAKVCGASII-IAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALE 102 (174)
T ss_dssp CCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEE-EEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCCEEEEeCC-CHHHhhhhhccccccccee-eeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEE
Confidence 4778889999998 9999999999999997655 454443311111 122 232 223333322 25899999
Q ss_pred eeChHHHHHHHHHHHHcCCCEEE
Q 030169 123 YVPPPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 123 fVpp~av~~a~~eAie~GIk~VV 145 (182)
++......+.+..+++.+=+.++
T Consensus 103 ~~G~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 103 STGSPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp CSCCHHHHHHHHHTEEEEEEEEE
T ss_pred cCCcHHHHHHHHhcccCceEEEE
Confidence 99988777776666666444443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.12 Score=40.25 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=59.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc---EEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D---vaVdfVpp~av~~a~~ 134 (182)
+.++|.|+++..|+++++.+.+.|.+|+ .++..... .-...+++.+.. ..+ +..|.+.++.+.++++
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~--i~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVA--LVDWNLEA-------GVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFR 74 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH-------HHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH-------HHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHH
Confidence 4477789999999999999999999988 44433211 011122222211 112 3457889999999999
Q ss_pred HHHHc--CCCEEEEeCCCCC-HHHHHHH
Q 030169 135 EAMEA--ELDLVVCITEGIP-QHDMVIN 159 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~-~eD~~~l 159 (182)
++.+. ++..+|+ ..|+. .++.++.
T Consensus 75 ~~~~~~G~iDilVn-nAg~~~~~~~~~~ 101 (254)
T d2gdza1 75 KVVDHFGRLDILVN-NAGVNNEKNWEKT 101 (254)
T ss_dssp HHHHHHSCCCEEEE-CCCCCCSSSHHHH
T ss_pred HHHHHcCCcCeecc-cccccccccchhe
Confidence 99876 6888888 55544 3443433
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.13 E-value=0.12 Score=41.09 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=59.3
Q ss_pred ceEEE-EccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc---cCCc---EEEEeeChHHHHH
Q 030169 59 TRVIC-QGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE---TKAN---ASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViV-vG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~---~~~D---vaVdfVpp~av~~ 131 (182)
.||++ .|+++-+|+.+++.+.+.|.+++........ +.--..++|..++ ...+ +.+|.+.++.+.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~ 74 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRD-------LKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAA 74 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESC-------GGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCC-------hhhhHHHHHHHHHHhccCCceEEEeccccchHhhhh
Confidence 35655 4999999999999999999775511111111 1111123333221 1222 4568889999999
Q ss_pred HHHHHHHcCCCEEEEeC--------CCCCHHHHHHHHHH
Q 030169 132 AIMEAMEAELDLVVCIT--------EGIPQHDMVINFTR 162 (182)
Q Consensus 132 a~~eAie~GIk~VV~iT--------eG~~~eD~~~l~~~ 162 (182)
+++++.+.++..+++-+ +.++.+|..++.+.
T Consensus 75 ~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~v 113 (285)
T d1jtva_ 75 ARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDV 113 (285)
T ss_dssp HHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred hhhhccccchhhhhhcccccccccccchhHhhhhhhhhc
Confidence 99888777888888733 22455666555443
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.054 Score=42.30 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=47.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~~e 135 (182)
.++++|.|+++.+|+++++.+.+.|.+|+ .++.... .++++.++. .+ -+.+|...++.+.+++++
T Consensus 7 GK~~lITGas~GIG~aia~~la~~G~~V~--~~~r~~~-----------~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 7 GRRVLVTGAGKGIGRGTVQALHATGARVV--AVSRTQA-----------DLDSLVRECPGIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHSTTCEEEECCTTCHHHHHHHHTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEE--EEECCHH-----------HHHHHHHhcCCCeEEEEeCCCHHHHHHHHHH
Confidence 35689999999999999999999999988 5554331 123332221 12 244566776665544432
Q ss_pred HHHcCCCEEEE
Q 030169 136 AMEAELDLVVC 146 (182)
Q Consensus 136 Aie~GIk~VV~ 146 (182)
. .++..+|+
T Consensus 74 ~--g~iDilVn 82 (244)
T d1pr9a_ 74 V--GPVDLLVN 82 (244)
T ss_dssp C--CCCCEEEE
T ss_pred h--CCceEEEe
Confidence 1 26787877
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.13 Score=39.35 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=26.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeecc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd 91 (182)
|||++.|. +.+|..+.+.+++.|.+|+ +-+.
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~-~Vvt 31 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEIS-AIFT 31 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEE-EEEc
Confidence 68999987 6689999999999999998 6664
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.84 E-value=0.14 Score=40.01 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=56.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHH-HHHhccCCcEE---EEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVA-EAKAETKANAS---VIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~-ea~~~~~~Dva---VdfVpp~av~~a~ 133 (182)
.+.++|.|+++-+|+.+++.+.+.|.+|+ ..+..... -.+.+. ++.+....++. .|.+.++.+.+++
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~--~~~r~~~~-------~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~ 74 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIV--LNGFGDAA-------EIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLV 74 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EECCSCHH-------HHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCCcHH-------HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 45578889999999999999999999988 44433211 111222 22232334443 5788899999999
Q ss_pred HHHHHc--CCCEEEEeCCC
Q 030169 134 MEAMEA--ELDLVVCITEG 150 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG 150 (182)
+++.+. ++..+|+ ..|
T Consensus 75 ~~~~~~~G~iDiLVn-nAG 92 (260)
T d1x1ta1 75 DNAVRQMGRIDILVN-NAG 92 (260)
T ss_dssp HHHHHHHSCCSEEEE-CCC
T ss_pred HHHHHHhCCCcEEEe-ecc
Confidence 999886 6888887 544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.80 E-value=0.15 Score=37.06 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=59.0
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEe------cCcccccc----HHHHHhc---cCCcE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEH------LGLPVFNS----VAEAKAE---TKANA 119 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i------~GvPVy~S----v~ea~~~---~~~Dv 119 (182)
.+.+...|+|+|+ |-.|...+..+...|. +|+ .++....-.+. ...-.|.+ +++..+. ..+|+
T Consensus 25 ~vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi--~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~ 101 (176)
T d2jhfa2 25 KVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARII--GVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDF 101 (176)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEE--EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCCCEEEEECC-CCcHHHHHHHHHHcCCceEE--eecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCE
Confidence 4677788999999 6799999999999884 555 55554422221 11222322 3343332 36899
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 120 SVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++++......+.+.+.+..|-..+++
T Consensus 102 vid~~G~~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 102 SFEVIGRLDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp EEECSCCHHHHHHHHHHBCTTTCEEEE
T ss_pred EEecCCchhHHHHHHHHHhcCCcceEE
Confidence 999999888887777777775444443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.78 E-value=0.18 Score=39.57 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=56.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCcE---EEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKANA---SVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~Dv---aVdfVpp~av~~a~ 133 (182)
.+.++|.|+++-+|+.+++.+.+.|.+|+..+.++.+ .-...+++.+. .+.++ ..|.+.++.+.+++
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~---------l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~ 74 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEG---------LEASKAAVLETAPDAEVLTTVADVSDEAQVEAYV 74 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---------HHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---------HHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHH
Confidence 3468888999999999999999999998833333322 11112232221 12232 34778999999999
Q ss_pred HHHHHc--CCCEEEEeCCC
Q 030169 134 MEAMEA--ELDLVVCITEG 150 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG 150 (182)
+++.+. ++..+|+ ..|
T Consensus 75 ~~~~~~~G~iDiLVn-nAG 92 (258)
T d1iy8a_ 75 TATTERFGRIDGFFN-NAG 92 (258)
T ss_dssp HHHHHHHSCCSEEEE-CCC
T ss_pred HHHHHHhCCCCEEEE-CCc
Confidence 999986 6888887 444
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=90.68 E-value=0.15 Score=39.70 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=52.2
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHHHH
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~eAi 137 (182)
|+|.|+++.+|+++++.+.+.|.+|+ ......... ...+.+.+++...+ +..|.+.++.+.++++++.
T Consensus 4 ~lITGas~GIG~a~a~~la~~Ga~V~-i~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (244)
T d1edoa_ 4 VVVTGASRGIGKAIALSLGKAGCKVL-VNYARSAKA--------AEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAI 74 (244)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEE-EEESSCHHH--------HHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCCCHHH--------HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 56669999999999999999999988 322222111 11222223322223 3457788999999999999
Q ss_pred Hc--CCCEEEE
Q 030169 138 EA--ELDLVVC 146 (182)
Q Consensus 138 e~--GIk~VV~ 146 (182)
+. ++..+|+
T Consensus 75 ~~~g~iDiLVn 85 (244)
T d1edoa_ 75 DAWGTIDVVVN 85 (244)
T ss_dssp HHSSCCSEEEE
T ss_pred HHcCCCCcccc
Confidence 87 5888887
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=90.64 E-value=0.11 Score=41.03 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=57.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
...++|.|+++.+|+++++.+.+.|.+|+ .++... +.++++.++...+ +..|.+.++.+.++++
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~--i~~r~~-----------~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 71 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEGAKVA--VLDKSA-----------ERLAELETDHGDNVLGIVGDVRSLEDQKQAAS 71 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCH-----------HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCH-----------HHHHHHHHHcCCCeeEEecccccHHHHHHHHH
Confidence 46688899999999999999999999988 444332 1133333322222 3457788999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 72 ~~~~~~g~idilvn-nAG~ 89 (276)
T d1bdba_ 72 RCVARFGKIDTLIP-NAGI 89 (276)
T ss_dssp HHHHHHSCCCEEEC-CCCC
T ss_pred HHHHHhCCcccccc-cccc
Confidence 99887 6888776 5553
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.51 E-value=0.13 Score=40.84 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=28.9
Q ss_pred CCceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPK 93 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~ 93 (182)
+..+|+|||+ |+.|+.+++.+. +.|.+|| +-.|..
T Consensus 31 ~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv-~vsD~~ 66 (239)
T d1gtma1 31 KGKTIAIQGY-GNAGYYLAKIMSEDFGMKVV-AVSDSK 66 (239)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EEECSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCccee-eccccc
Confidence 3578999999 999999999886 5689999 766654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.45 E-value=0.058 Score=43.01 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=27.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
+..+|+|||+ |+.|+.+++.+.+.|.+|+
T Consensus 30 ~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv 58 (242)
T d1v9la1 30 EGKTVAIQGM-GNVGRWTAYWLEKMGAKVI 58 (242)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEE
Confidence 3578999999 9999999999999999999
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.41 E-value=0.086 Score=39.16 Aligned_cols=88 Identities=13% Similarity=0.153 Sum_probs=55.8
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEe---cC--ccc-ccc---HHHHHh---ccCCcEE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEH---LG--LPV-FNS---VAEAKA---ETKANAS 120 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i---~G--vPV-y~S---v~ea~~---~~~~Dva 120 (182)
-+.+..+|+|+|+ |-.|...++.++..|. +|+ .+++...-.+. .| ..+ |++ .+++.+ ...+|++
T Consensus 24 ~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi--~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~v 100 (174)
T d1jqba2 24 DIEMGSSVVVIGI-GAVGLMGIAGAKLRGAGRII--GVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRV 100 (174)
T ss_dssp TCCTTCCEEEECC-SHHHHHHHHHHHTTTCSCEE--EECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCCCEEEEEcC-Ccchhhhhhhhhcccccccc--cccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceE
Confidence 3567888999998 9999999999999995 566 56654311111 12 111 222 222222 2358999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEE
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~V 144 (182)
++++....+.+.+.++++.+=+.+
T Consensus 101 id~~g~~~~~~~a~~~~~~~G~iv 124 (174)
T d1jqba2 101 IMAGGGSETLSQAVKMVKPGGIIS 124 (174)
T ss_dssp EECSSCTTHHHHHHHHEEEEEEEE
T ss_pred EEccCCHHHHHHHHHHHhcCCEEE
Confidence 999987776666666666543333
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.19 E-value=0.087 Score=40.72 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=29.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGG 96 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G 96 (182)
+.||+|+|+ |-.|+.+++.+...| .+|. -||+....
T Consensus 30 ~~~VliiG~-GglGs~va~~La~~Gvg~i~--lvD~D~Ve 66 (247)
T d1jw9b_ 30 DSRVLIVGL-GGLGCAASQYLASAGVGNLT--LLDFDTVS 66 (247)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCSEEE--EECCCBCC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEE--EECCcccc
Confidence 468999999 999999999999999 4555 66765544
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.09 E-value=0.25 Score=35.95 Aligned_cols=100 Identities=13% Similarity=0.062 Sum_probs=60.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-C---c-eEEeeccCCCCCeE---------------ecCccccccHHHHHhccC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-T---K-MVVGGVTPKKGGTE---------------HLGLPVFNSVAEAKAETK 116 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~---~-IV~AgVdp~~~G~~---------------i~GvPVy~Sv~ea~~~~~ 116 (182)
+.+||.|+||+|..|+.++-.+...+ + . +..-.++.....+. ...+.+.+...++.+ +
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 80 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK--D 80 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcc--c
Confidence 56799999999999999988777544 1 1 11001122111110 124566666777777 8
Q ss_pred CcEEEEee----------------ChHHHHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHH
Q 030169 117 ANASVIYV----------------PPPFAAAAIMEAMEAE-LDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 117 ~DvaVdfV----------------pp~av~~a~~eAie~G-Ik~VV~iTeG~~~eD~~~l 159 (182)
.|++|+.- +...+.+.+....+.. ...++++.+. |..-+..+
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN-PvDv~t~~ 139 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN-PANTNALI 139 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS-SHHHHHHH
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC-cHHHHHHH
Confidence 99999876 2455666666666654 3454443444 77666654
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.08 E-value=0.32 Score=36.99 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=29.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
-||+|.|+++.+|+++++.+.+.|.+|+..+.+++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 47999999999999999999999998882344443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.02 E-value=0.19 Score=37.18 Aligned_cols=84 Identities=11% Similarity=0.131 Sum_probs=55.5
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEe----cCcccccc------HHHHH---hccCCcE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEH----LGLPVFNS------VAEAK---AETKANA 119 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i----~GvPVy~S------v~ea~---~~~~~Dv 119 (182)
.+.+...|+|+|+ |-+|....+.+...| .+|+ .+|+...--+. ..-.++++ .++.. ....+|+
T Consensus 26 ~~~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi--~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~ 102 (176)
T d1d1ta2 26 KVKPGSTCVVFGL-GGVGLSVIMGCKSAGASRII--GIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGY 102 (176)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEE--EECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred CCCCCCEEEEECC-CchhHHHHHHHHHcCCceEE--EecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceE
Confidence 3567778999998 999999999999999 5677 67765422111 11222221 23222 2347999
Q ss_pred EEEeeChHHHHHHHHHHHHcC
Q 030169 120 SVIYVPPPFAAAAIMEAMEAE 140 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~G 140 (182)
+++++....+.....+++..|
T Consensus 103 vi~~~g~~~~~~~a~~~~~~~ 123 (176)
T d1d1ta2 103 TFEVIGHLETMIDALASCHMN 123 (176)
T ss_dssp EEECSCCHHHHHHHHTTSCTT
T ss_pred EEEeCCchHHHHHHHHHhhcC
Confidence 999999887766655555444
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.00 E-value=0.15 Score=40.21 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc----CC-cEEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET----KA-NASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~----~~-DvaVdfVpp~av~~a 132 (182)
.+.++|.|+++-.|+++++.+.+.|.+|+ .++..... . -...+++.+.. ++ =+..|.+.++.+.++
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~--~~~r~~~~--l-----~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~ 74 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVT--ITGRNEDR--L-----EETKQQILKAGVPAEKINAVVADVTEASGQDDI 74 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--H-----HHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHH
Confidence 35688889999999999999999999988 44433211 1 11122222211 11 134577889999999
Q ss_pred HHHHHHc--CCCEEEE
Q 030169 133 IMEAMEA--ELDLVVC 146 (182)
Q Consensus 133 ~~eAie~--GIk~VV~ 146 (182)
++++.+. ++..+|+
T Consensus 75 ~~~~~~~~G~iDilVn 90 (274)
T d1xhla_ 75 INTTLAKFGKIDILVN 90 (274)
T ss_dssp HHHHHHHHSCCCEEEE
T ss_pred HHHHHHHcCCceEEEe
Confidence 9999976 6888887
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.92 E-value=0.21 Score=35.54 Aligned_cols=89 Identities=20% Similarity=0.120 Sum_probs=55.1
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCc-cc--cc--cHHHHHh-c-cCCcEEEEe
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGL-PV--FN--SVAEAKA-E-TKANASVIY 123 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~Gv-PV--y~--Sv~ea~~-~-~~~DvaVdf 123 (182)
.+.|..+|+|.|+ |.+|....+.+...|.+++ +++......+. .|. .+ |. +..+.+. . .+.|..+++
T Consensus 24 ~~~~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~--~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 100 (168)
T d1rjwa2 24 GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVV--AVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVT 100 (168)
T ss_dssp TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCCEEEEeec-ccchhhhhHHHhcCCCeEe--ccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEee
Confidence 4667888999997 9999999999999999887 44443211110 111 11 11 2333222 1 256777777
Q ss_pred eChHHHHHHHHHHHHcCCCEEE
Q 030169 124 VPPPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 124 Vpp~av~~a~~eAie~GIk~VV 145 (182)
+......+.+.++++.|=+.++
T Consensus 101 ~~~~~~~~~a~~~l~~~G~i~~ 122 (168)
T d1rjwa2 101 AVSKPAFQSAYNSIRRGGACVL 122 (168)
T ss_dssp SCCHHHHHHHHHHEEEEEEEEE
T ss_pred cCCHHHHHHHHHHhccCCceEe
Confidence 7777777777777766544443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.90 E-value=0.24 Score=36.45 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=57.2
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEe---cC-ccccc----c--HHHHHhc---cCCcE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEH---LG-LPVFN----S--VAEAKAE---TKANA 119 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i---~G-vPVy~----S--v~ea~~~---~~~Dv 119 (182)
.+.+..+|+|+|+ |-.|...++.++..|. +|+ .+|+...-.+. .| -.+++ + +++..+. ..+|+
T Consensus 24 ~~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi--~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~ 100 (174)
T d1p0fa2 24 KVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRII--GVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDY 100 (174)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEE--EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCCCEEEEECC-CchhHHHHHHHHHcCCceee--ccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcE
Confidence 4677888999998 9999999999999995 566 66665422211 12 22332 1 4444432 26899
Q ss_pred EEEeeChHHHHHHHHHHHHcC
Q 030169 120 SVIYVPPPFAAAAIMEAMEAE 140 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~G 140 (182)
+++++....+.+....++..+
T Consensus 101 vid~~g~~~~~~~~~~~~~~~ 121 (174)
T d1p0fa2 101 AVECAGRIETMMNALQSTYCG 121 (174)
T ss_dssp EEECSCCHHHHHHHHHTBCTT
T ss_pred EEEcCCCchHHHHHHHHHHHh
Confidence 999999888777766666554
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=89.89 E-value=0.073 Score=42.43 Aligned_cols=90 Identities=11% Similarity=0.068 Sum_probs=51.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
..+|+|||+ |+.|+.+++.+.+.|.++|+.++++.....- ..|.-++ +.+++.+ .+||+.+-.--.....+- .
T Consensus 39 g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~-~~cDIl~PcA~~~~I~~~--~ 113 (230)
T d1leha1 39 GLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYG-VTCDIFAPCALGAVLNDF--T 113 (230)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTT-CCCSEEEECSCSCCBSTT--H
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCccccc-ccccEecccccccccChH--H
Confidence 468999999 9999999999999999999334443221100 0122222 2344433 378877654333222211 1
Q ss_pred HHHcCCCEEEEeC-CCCC
Q 030169 136 AMEAELDLVVCIT-EGIP 152 (182)
Q Consensus 136 Aie~GIk~VV~iT-eG~~ 152 (182)
+-+-..+.|+.-+ -+++
T Consensus 114 ~~~l~ak~Ive~ANn~~t 131 (230)
T d1leha1 114 IPQLKAKVIAGSADNQLK 131 (230)
T ss_dssp HHHCCCSEECCSCSCCBS
T ss_pred hhccCccEEEecccCCCC
Confidence 2233667777644 3444
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.89 E-value=0.3 Score=35.49 Aligned_cols=98 Identities=8% Similarity=-0.043 Sum_probs=60.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-------CceEEeeccCCCCCeE---------------ecCccccccHHHHHhc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-------TKMVVGGVTPKKGGTE---------------HLGLPVFNSVAEAKAE 114 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-------~~IV~AgVdp~~~G~~---------------i~GvPVy~Sv~ea~~~ 114 (182)
+.+||.|+||+|+-|+.++-.+...+ .+++ .+|..+.... ...+.+..+.+++.+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~--l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILV--LLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFK- 78 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEE--EECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTT-
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEE--EecCccchhhhhhhhhhhcccccccccccccCcccccccC-
Confidence 45799999999999999887666433 2344 4544332111 113445555777777
Q ss_pred cCCcEEEEeeC----------------hHHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHH
Q 030169 115 TKANASVIYVP----------------PPFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 115 ~~~DvaVdfVp----------------p~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l 159 (182)
+.|++|+... ....++.+....+. +-..++++.++ |..-+..+
T Consensus 79 -~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN-PvD~mt~v 138 (154)
T d5mdha1 79 -DLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN-PANTNCLT 138 (154)
T ss_dssp -TCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS-SHHHHHHH
T ss_pred -CceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC-cHHHHHHH
Confidence 7899988764 25666777777664 66654433333 66555543
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=89.46 E-value=0.15 Score=39.16 Aligned_cols=30 Identities=10% Similarity=0.167 Sum_probs=27.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
++++++|.|+++-+|+.+++.+.+.|.+|+
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~ 32 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGAEVT 32 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence 356799999999999999999999999988
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.33 E-value=0.34 Score=35.80 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=56.7
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEe---cC-cccc-----cc-HHHHH---hccCCcE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEH---LG-LPVF-----NS-VAEAK---AETKANA 119 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i---~G-vPVy-----~S-v~ea~---~~~~~Dv 119 (182)
.+.+..+|+|+|+ |-.|...++.++..|. +|++...++.+ .+. .| -.++ ++ .++.. ....+|+
T Consensus 25 ~v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r--~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 25 KVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEK--FPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG--HHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHH--HHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 4677788999998 9999999999999996 56523444433 111 12 1222 21 33333 2347999
Q ss_pred EEEeeChHHHHHHHHHHHHcC
Q 030169 120 SVIYVPPPFAAAAIMEAMEAE 140 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~G 140 (182)
+++++....+.+.+.+++..|
T Consensus 102 vie~~G~~~~~~~a~~~~~~g 122 (174)
T d1e3ia2 102 SLDCAGTAQTLKAAVDCTVLG 122 (174)
T ss_dssp EEESSCCHHHHHHHHHTBCTT
T ss_pred EEEecccchHHHHHHHHhhcC
Confidence 999999988888877777664
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.27 E-value=0.18 Score=36.27 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=53.2
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cC-ccccc----c-HHHHHhc-cCCcEEEEe
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LG-LPVFN----S-VAEAKAE-TKANASVIY 123 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~G-vPVy~----S-v~ea~~~-~~~DvaVdf 123 (182)
.+.+..+|+|.|+ |-.|...++.++..|.+++ .++....-.+. .| -.+++ + .+++.+. .+.|..+++
T Consensus 24 ~~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi--~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~ 100 (166)
T d1llua2 24 NARPGQWVAISGI-GGLGHVAVQYARAMGLHVA--AIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVT 100 (166)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEE--EEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEEC
T ss_pred CCCCCCEEEEeec-cccHHHHHHHHHHcCCccc--eecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccc
Confidence 4677888999998 9999999999999999888 55554311111 11 11221 1 3333222 256777777
Q ss_pred eChHHHHHHHHHHHHcCCC
Q 030169 124 VPPPFAAAAIMEAMEAELD 142 (182)
Q Consensus 124 Vpp~av~~a~~eAie~GIk 142 (182)
+......+.+.++++.|=+
T Consensus 101 ~~~~~~~~~~~~~l~~~G~ 119 (166)
T d1llua2 101 AVSNSAFGQAIGMARRGGT 119 (166)
T ss_dssp CSCHHHHHHHHTTEEEEEE
T ss_pred cccchHHHHHHHHhcCCcE
Confidence 7776666666666665533
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.75 E-value=0.13 Score=40.36 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-C-CcEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-K-ANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~-~DvaVdfVpp~av~~a~~e 135 (182)
.+.++|.|+++-+|+.+++.+.+.|.+|+ ..+... +.++++.++. + .=+..|.+.++.+.+++++
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~--i~~r~~-----------~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 72 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVV--ICDKDE-----------SGGRALEQELPGAVFILCDVTQEDDVKTLVSE 72 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEE--EEESCH-----------HHHHHHHHHCTTEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCH-----------HHHHHHHHhcCCCeEEEccCCCHHHHHHHHHH
Confidence 35688889999999999999999999988 343321 1123332221 1 1234577889999999999
Q ss_pred HHHc--CCCEEEEeCCC
Q 030169 136 AMEA--ELDLVVCITEG 150 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG 150 (182)
+.+. ++..+|+ ..|
T Consensus 73 ~~~~~g~iDilVn-nAG 88 (250)
T d1ydea1 73 TIRRFGRLDCVVN-NAG 88 (250)
T ss_dssp HHHHHSCCCEEEE-CCC
T ss_pred HHHhcCCCCEEEe-ccc
Confidence 9986 6888887 443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=0.49 Score=33.52 Aligned_cols=99 Identities=8% Similarity=-0.072 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--Ce-----EecCccccc-c--HHHHHhc---cCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--GT-----EHLGLPVFN-S--VAEAKAE---TKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--G~-----~i~GvPVy~-S--v~ea~~~---~~~DvaVdfV 124 (182)
...|+|+|+ |+.|+.+++.+.+.|.+++ .|+.... .. ...|++++. + -.+.+++ .++|+++..+
T Consensus 3 knHiII~G~-g~~g~~l~~~L~~~~~~v~--vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 3 KDHFIVCGH-SILAINTILQLNQRGQNVT--VISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEE--EEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEE--EEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 446999999 9999999999999998887 4544321 00 012555542 2 2222221 2689999988
Q ss_pred ChHHHH-HHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHH
Q 030169 125 PPPFAA-AAIMEAMEAE-LDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 125 pp~av~-~a~~eAie~G-Ik~VV~iTeG~~~eD~~~l~~ 161 (182)
+-+..- .++..+-+.+ ...+++.+ ...+....+.+
T Consensus 80 ~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~ 116 (153)
T d1id1a_ 80 DNDADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKIKM 116 (153)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCCCceEEEE--cCHHHHHHHHH
Confidence 765544 3344444433 32344433 23344444433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.52 E-value=0.083 Score=38.54 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=45.1
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCc-ccccc--HHHHHhc--cCCcEEEEeeC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGL-PVFNS--VAEAKAE--TKANASVIYVP 125 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~Gv-PVy~S--v~ea~~~--~~~DvaVdfVp 125 (182)
.+.+..+|+|+|+ |-.|...++.++..|.+++ + ++....-.+. .|. .++++ -.+..+. ..+|.+++++.
T Consensus 24 ~~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi-~-~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 24 GCGPGKKVGIVGL-GGIGSMGTLISKAMGAETY-V-ISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp TCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEE-E-EESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CcCCCCEEEEECC-CCcchhHHHHhhhcccccc-c-cccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 4678889999998 9999999999999999988 3 5544321111 121 23332 2222221 25799999866
Q ss_pred h
Q 030169 126 P 126 (182)
Q Consensus 126 p 126 (182)
.
T Consensus 101 ~ 101 (168)
T d1piwa2 101 S 101 (168)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=88.50 E-value=0.44 Score=37.09 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=58.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCcEEE---Eee-ChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKANASV---IYV-PPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~DvaV---dfV-pp~av~~a 132 (182)
.+.|+|.|+++-.|..+++.+.+.|.+++ .+....... ..++++... .+.++.. |.+ +.+.+.++
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vi--i~~r~~~~~--------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 74 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNF--VILDRVENP--------TALAELKAINPKVNITFHTYDVTVPVAESKKL 74 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEE--EEEESSCCH--------HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEE--EEECCcccH--------HHHHHHHhhCCCCCEEEEEeecCCCHHHHHHH
Confidence 45689999999999999999999999877 232222111 112332221 1223322 333 45668888
Q ss_pred HHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030169 133 IMEAMEA--ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
++++.+. +|..+|+-+-...+++.+++.+
T Consensus 75 ~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~ 105 (254)
T d1sbya1 75 LKKIFDQLKTVDILINGAGILDDHQIERTIA 105 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCTTCHHHHHH
T ss_pred HHHHHHHcCCCCEEEeCCCCCCHHHHHHHHH
Confidence 8888875 6888888555555666555543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=88.40 E-value=0.076 Score=38.82 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=56.7
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----ecCccccc----cHHHHHhc---cCCcEEEEe
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----HLGLPVFN----SVAEAKAE---TKANASVIY 123 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----i~GvPVy~----Sv~ea~~~---~~~DvaVdf 123 (182)
+.+...|+|+|+ |..|...++.+...|.+.+ ..+++...-.+ ...--+++ .+++..+. ..+|+++++
T Consensus 30 ~~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~v-v~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~ 107 (172)
T d1h2ba2 30 LYPGAYVAIVGV-GGLGHIAVQLLKVMTPATV-IALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDF 107 (172)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHHCCCEE-EEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEES
T ss_pred cCCCCEEEEeCC-ChHHHHHHHHHHhhcCccc-ccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEe
Confidence 467788999998 9999999999998885444 35554421011 11112222 24444443 358999999
Q ss_pred eChHHHHHHHHHHHHcCCCEE
Q 030169 124 VPPPFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 124 Vpp~av~~a~~eAie~GIk~V 144 (182)
+......+.+..++..|=+.+
T Consensus 108 ~g~~~~~~~a~~~l~~~G~iv 128 (172)
T d1h2ba2 108 VGSQATVDYTPYLLGRMGRLI 128 (172)
T ss_dssp SCCHHHHHHGGGGEEEEEEEE
T ss_pred cCcchHHHHHHHHHhCCCEEE
Confidence 998887777777777664444
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.37 Score=37.49 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=64.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~eA 136 (182)
-++|.|+++-+|+.+++.+.+.|.+|+ .++.+... . =...+++.+ ...+ ...|.+.++.+..+++++
T Consensus 9 v~lITGas~GIG~~ia~~la~~G~~V~--l~~r~~~~--l-----~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 9 IVLITGAGHGIGRLTAYEFAKLKSKLV--LWDINKHG--L-----EETAAKCKG-LGAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEE--EEESCHHH--H-----HHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--H-----HHHHHHHHh-cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 377779999999999999999999988 44443311 1 111223222 2222 456788899999999999
Q ss_pred HHc-C-CCEEEEeCCCCC------HHHHHHHHHHhcccchhcch
Q 030169 137 MEA-E-LDLVVCITEGIP------QHDMVINFTRVNILLVAFLN 172 (182)
Q Consensus 137 ie~-G-Ik~VV~iTeG~~------~eD~~~l~~~ak~ipv~~~~ 172 (182)
.+. | +..+|+ ..|+. +.+.+.+++.-.....+..+
T Consensus 79 ~~~~g~idilin-nag~~~~~~~~~~~~~~~~~~~~vN~~g~~~ 121 (244)
T d1yb1a_ 79 KAEIGDVSILVN-NAGVVYTSDLFATQDPQIEKTFEVNVLAHFW 121 (244)
T ss_dssp HHHTCCCSEEEE-CCCCCCCCCCGGGHHHHHHHHHHHHTHHHHH
T ss_pred HHHcCCCceeEe-eccccccccccccchhHHHhhcceeeeccHH
Confidence 865 4 777776 54433 44555555554444444433
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=88.25 E-value=1.6 Score=32.69 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCceEEEEccCCCCchh----h-hHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHH---hccCCcEEEEeeC---
Q 030169 57 KNTRVICQGITGKNGTF----H-TEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK---AETKANASVIYVP--- 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~----v-~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~---~~~~~DvaVdfVp--- 125 (182)
+..||++ +..|.-++. + ...+.+.|++++ . +..+.+.+++. .+.++|++.+.+-
T Consensus 36 r~pkVll-a~~g~D~Hd~G~~~va~~l~~~G~eVi-------~-------lg~~~~~e~iv~aa~~~~advI~iSs~~~~ 100 (168)
T d7reqa2 36 RRPRILL-AKMGQDGHDRGQKVIATAYADLGFDVD-------V-------GPLFQTPEETARQAVEADVHVVGVSSLAGG 100 (168)
T ss_dssp SCCEEEE-ECBTTCCCCHHHHHHHHHHHHTTCEEE-------E-------CCTTBCHHHHHHHHHHHTCSEEEEEECSSC
T ss_pred CCCeEEE-EeCCccHHHHHHHHHHHHHHhCCccee-------c-------CCCcCcHHHHHHHHHccCCCEEEEecCccc
Confidence 3445644 333544443 3 334557788888 2 22444544443 3458999998764
Q ss_pred -hHHHHHHHHHHHHcCCCEEEEeCCC-CCHHHHHHHHHH
Q 030169 126 -PPFAAAAIMEAMEAELDLVVCITEG-IPQHDMVINFTR 162 (182)
Q Consensus 126 -p~av~~a~~eAie~GIk~VV~iTeG-~~~eD~~~l~~~ 162 (182)
...+.++++++-+.|.+.|.++--| +|.+|..+|.++
T Consensus 101 ~~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~ 139 (168)
T d7reqa2 101 HLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKD 139 (168)
T ss_dssp HHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHhC
Confidence 5677788888888885543333344 699999998876
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.24 E-value=0.27 Score=35.46 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=57.7
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEe---cC-ccccc------cHHHHHh---ccCCcE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEH---LG-LPVFN------SVAEAKA---ETKANA 119 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i---~G-vPVy~------Sv~ea~~---~~~~Dv 119 (182)
.+.+..+|+|+|+ |-.|...+..+...+. +|+ .+++.....+. .| -.+++ ..++..+ ...+|+
T Consensus 25 ~~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi--~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~ 101 (175)
T d1cdoa2 25 KVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRII--AVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDF 101 (175)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEE--EECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCCCEEEEEec-CCccchHHHHHHHHhhchhe--eecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcce
Confidence 5678888999998 7788888888888875 455 66665432221 12 12222 1333333 236999
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEE
Q 030169 120 SVIYVPPPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~GIk~VV 145 (182)
+++++....+...+..+...|-..++
T Consensus 102 vid~~G~~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 102 SLECVGNVGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp EEECSCCHHHHHHHHHTBCTTTCEEE
T ss_pred eeeecCCHHHHHHHHHHhhCCCccee
Confidence 99999988888777777666544443
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.23 Score=38.00 Aligned_cols=64 Identities=25% Similarity=0.300 Sum_probs=43.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeecc-CCCCCeE--------ecCcccccc------------HHHHHhccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT-PKKGGTE--------HLGLPVFNS------------VAEAKAETKA 117 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd-p~~~G~~--------i~GvPVy~S------------v~ea~~~~~~ 117 (182)
|||++.|. +..|..+.+.+.+.|.+|+ +-+. |.+.+.. .+++|+|.- +-+.+++.++
T Consensus 1 MkI~~~G~-~~~~~~~l~~L~~~~~~i~-~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~ 78 (203)
T d2bw0a2 1 MKIAVIGQ-SLFGQEVYCHLRKEGHEVV-GVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGA 78 (203)
T ss_dssp CEEEEECC-HHHHHHHHHHHHHTTCEEE-EEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCC
T ss_pred CEEEEEcC-CHHHHHHHHHHHHCCCcEE-EEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCC
Confidence 68999997 7788888998888899999 6554 2222211 247887631 2333455678
Q ss_pred cEEEEee
Q 030169 118 NASVIYV 124 (182)
Q Consensus 118 DvaVdfV 124 (182)
|+++.+.
T Consensus 79 Dliv~~~ 85 (203)
T d2bw0a2 79 ELNVLPF 85 (203)
T ss_dssp SEEEESS
T ss_pred CceEEee
Confidence 8887754
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=87.96 E-value=0.1 Score=38.87 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=55.1
Q ss_pred eecCCceEEEE-ccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe------cC-ccccc-------c----HHHHHh-
Q 030169 54 FVDKNTRVICQ-GITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH------LG-LPVFN-------S----VAEAKA- 113 (182)
Q Consensus 54 li~~~trViVv-G~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i------~G-vPVy~-------S----v~ea~~- 113 (182)
.+.+..+|+|+ |++|-.|+..++..+..|.+++ +-+.....-++. .| -.+++ . +.+...
T Consensus 25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI-~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~ 103 (189)
T d1gu7a2 25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSI-SVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ 103 (189)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEE-EEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEE-EEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhh
Confidence 46666668887 8889999999999999999999 666443311110 01 11111 1 223222
Q ss_pred -ccCCcEEEEeeChHHHHHHHHHHHHcCCCEE
Q 030169 114 -ETKANASVIYVPPPFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 114 -~~~~DvaVdfVpp~av~~a~~eAie~GIk~V 144 (182)
..++|+++|++..+...+.+ .++..+=+.|
T Consensus 104 ~g~~vdvv~D~vg~~~~~~~~-~~l~~~G~~v 134 (189)
T d1gu7a2 104 SGGEAKLALNCVGGKSSTGIA-RKLNNNGLML 134 (189)
T ss_dssp HTCCEEEEEESSCHHHHHHHH-HTSCTTCEEE
T ss_pred ccCCceEEEECCCcchhhhhh-hhhcCCcEEE
Confidence 23589999999988777665 4454443443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=87.71 E-value=1 Score=32.05 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=58.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeE-----e--------cCcccc-ccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTE-----H--------LGLPVF-NSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~-----i--------~GvPVy-~Sv~ea~~~~~~DvaVd 122 (182)
+||.|+|+ |+.|+.++..+...+ -+|+ -+|....-.+ . ....+. .+-.++.+ ++|++++
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~--L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~--dadvvvi 75 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELV--LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTA--NSDIVII 75 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEE--EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGT--TCSEEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEE--EeccccccchhhhhhhhcccchhcccceEEecCCHHHhc--CCeEEEE
Confidence 68999997 999999988777766 4666 7665542111 0 022222 22334445 7899888
Q ss_pred eeC----------------hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030169 123 YVP----------------PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 123 fVp----------------p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l 159 (182)
..- .....+.++...+.+.+.++++.+. |..-+..+
T Consensus 76 tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN-Pvd~~~~~ 127 (142)
T d1guza1 76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN-PLDIMTHV 127 (142)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS-SHHHHHHH
T ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC-ChHHHHHH
Confidence 752 2335677777777777777665544 55554443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.36 E-value=0.16 Score=38.15 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=52.1
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe-----cCcccccc--HHHHH---hccCCcEEEEee
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH-----LGLPVFNS--VAEAK---AETKANASVIYV 124 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i-----~GvPVy~S--v~ea~---~~~~~DvaVdfV 124 (182)
..+..+|+|+|++|-.|++.++..+..|.+++ +-..... ..+. ....+..+ .++.. ....+|+++|.+
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Vi-at~~s~~-k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVE-ASTGKAA-EHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEE-EEESCTT-CHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceE-EecCchH-HHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence 34456699999999999999999999999999 6543322 1111 02222222 22222 233789999999
Q ss_pred ChHHHHHHHHHHHHcCCCEE
Q 030169 125 PPPFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 125 pp~av~~a~~eAie~GIk~V 144 (182)
..+...+. ..++..|=+.|
T Consensus 107 gg~~~~~~-l~~l~~~Griv 125 (176)
T d1xa0a2 107 GGRTLATV-LSRMRYGGAVA 125 (176)
T ss_dssp TTTTHHHH-HHTEEEEEEEE
T ss_pred CchhHHHH-HHHhCCCceEE
Confidence 87654444 34444443443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.25 E-value=0.2 Score=38.86 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=47.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~~e 135 (182)
.++++|.|+++-.|+.+++.+.+.|.+|+ .++.... .++++.++. ++ -+.+|.+.++.+.+++++
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga~V~--~~~r~~~-----------~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 71 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGAKVV--AVTRTNS-----------DLVSLAKECPGIEPVCVDLGDWDATEKALGG 71 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE--EEESCHH-----------HHHHHHHHSTTCEEEECCTTCHHHHHHHHTT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHH-----------HHHHHHHhcCCCeEEEEeCCCHHHHHHHHHH
Confidence 45688899999999999999999999988 4443321 123332221 12 233456666665554433
Q ss_pred HHHcCCCEEEEeCCC
Q 030169 136 AMEAELDLVVCITEG 150 (182)
Q Consensus 136 Aie~GIk~VV~iTeG 150 (182)
. .++..+|+ ..|
T Consensus 72 ~--g~iDilVn-nAg 83 (242)
T d1cyda_ 72 I--GPVDLLVN-NAA 83 (242)
T ss_dssp C--CCCSEEEE-CCC
T ss_pred c--CCCeEEEE-CCc
Confidence 2 36777887 444
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.25 E-value=0.048 Score=40.79 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe--cCc-cccccHHHH----Hh---ccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH--LGL-PVFNSVAEA----KA---ETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i--~Gv-PVy~Sv~ea----~~---~~~~DvaVdfVpp~ 127 (182)
...|+|.|++|--|+..++..+..|.+++ +-+.....-+.. .|. .+++. ++. .+ ...+|+++|.+-.+
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Vi-at~~s~~k~~~~~~lGad~vi~~-~~~~~~~~~~~~~~gvd~vid~vgg~ 101 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVV-ASTGNREAADYLKQLGASEVISR-EDVYDGTLKALSKQQWQGAVDPVGGK 101 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEE-EEESSSSTHHHHHHHTCSEEEEH-HHHCSSCCCSSCCCCEEEEEESCCTH
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceE-EEecCHHHHHHHHhhcccceEec-cchhchhhhcccCCCceEEEecCcHH
Confidence 44599999999999999999999999999 655543311111 111 12221 222 11 12589999999988
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCC
Q 030169 128 FAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG 150 (182)
...+.++..-..|.=.+++.+.|
T Consensus 102 ~~~~~~~~l~~~G~iv~~G~~~g 124 (167)
T d1tt7a2 102 QLASLLSKIQYGGSVAVSGLTGG 124 (167)
T ss_dssp HHHHHHTTEEEEEEEEECCCSSC
T ss_pred HHHHHHHHhccCceEEEeeccCC
Confidence 76655443333343333333333
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=87.16 E-value=0.29 Score=37.59 Aligned_cols=83 Identities=14% Similarity=0.060 Sum_probs=54.3
Q ss_pred CceEEEEccCC--CCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITG--KNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tG--kmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~ 133 (182)
.++++|.|++| -.|+++++.+.+.|.+|+ ..+... . .....++..+.. .+ =+..|.+.++.+.+++
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~--i~~~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVA--LSYQAE-R-------LRPEAEKLAEALGGALLFRADVTQDEELDALF 77 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTCEEE--EEESSG-G-------GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEE--EEeCcH-H-------HHHHHHHhhhccCcccccccccCCHHHHHHHH
Confidence 45688999987 589999999999999988 333221 0 111122322221 12 2445788899999999
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 78 ~~~~~~~g~iDilVn-nag~ 96 (256)
T d1ulua_ 78 AGVKEAFGGLDYLVH-AIAF 96 (256)
T ss_dssp HHHHHHHSSEEEEEE-CCCC
T ss_pred HHHHHhcCCceEEEe-cccc
Confidence 988876 5777776 5444
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=86.99 E-value=0.75 Score=36.54 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=51.0
Q ss_pred CccccccHHHHHhccCCcEEEEeeCh-HHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 101 GLPVFNSVAEAKAETKANASVIYVPP-PFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 101 GvPVy~Sv~ea~~~~~~DvaVdfVpp-~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
|+.+.+|..|+.+ ++|+++..+|. +.+.+++++..++ .-..||+-++-++.....++.+..+.-+
T Consensus 128 Gv~v~~d~~Eav~--~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kg 194 (242)
T d2b0ja2 128 GLKVTSDDREAVE--GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGRED 194 (242)
T ss_dssp TCEEESCHHHHHT--TCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTT
T ss_pred CCEEECCHHHHHh--cCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCC
Confidence 6889999999999 89999999976 4577888777765 3344666577789999888888775533
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=86.57 E-value=0.86 Score=35.01 Aligned_cols=91 Identities=10% Similarity=0.009 Sum_probs=58.0
Q ss_pred EEEEccCCCCchhhhHHHHHhCCce------EEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHH
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKM------VVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAA 131 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~I------V~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~ 131 (182)
|+|.|+++-+|+++++.+.+.|.++ | ...+..... . -...+|+ ++...+ +..|.+.++.+.+
T Consensus 4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v-~~~~r~~~~--l-----~~~~~~~-~~~g~~~~~~~~Dvt~~~~v~~ 74 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVL-VLSSRTAAD--L-----EKISLEC-RAEGALTDTITADISDMADVRR 74 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEE-EEEESCHHH--H-----HHHHHHH-HTTTCEEEEEECCTTSHHHHHH
T ss_pred EEEccCCCHHHHHHHHHHHHhCccccccCcEE-EEEeCCHHH--H-----HHHHHHH-HhcCCcEEEEEecCCCHHHHHH
Confidence 5677999999999999999999762 2 234433211 1 0112222 222233 3457888999999
Q ss_pred HHHHHHHc--CCCEEEEeCCC---------CCHHHHHHHHH
Q 030169 132 AIMEAMEA--ELDLVVCITEG---------IPQHDMVINFT 161 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG---------~~~eD~~~l~~ 161 (182)
+++++.+. ++..+|+ ..| ++++|.+++.+
T Consensus 75 ~~~~~~~~~g~iDilvn-nAg~~~~~~~~~~~~~~~~~~~~ 114 (240)
T d2bd0a1 75 LTTHIVERYGHIDCLVN-NAGVGRFGALSDLTEEDFDYTMN 114 (240)
T ss_dssp HHHHHHHHTSCCSEEEE-CCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHcCCcceeec-ccccccCCccccCCHHHHhhcCC
Confidence 99999986 6888887 545 34555555544
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.50 E-value=0.54 Score=34.09 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=55.2
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCC---Ce--Ee--------cCccccccHHHHHhccCCcEE
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKG---GT--EH--------LGLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~---G~--~i--------~GvPVy~Sv~ea~~~~~~Dva 120 (182)
+...||.|+|+ |+.|+.++-.+...+ -||+ .+|.... |+ ++ ..+.++..-.+..+ ++|++
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~--L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~--daDvv 78 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIV--LIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCR--DADLV 78 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEE--EECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTT--TCSEE
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEE--EEeeccccccchhccHhhCccccCCCeEEEECCHHHhc--cceeE
Confidence 34578999998 999999988777666 4676 6765431 10 00 12334444444455 68888
Q ss_pred EEeeC----------------hHHHHHHHHHHHHcCCCEEEEeC
Q 030169 121 VIYVP----------------PPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 121 VdfVp----------------p~av~~a~~eAie~GIk~VV~iT 148 (182)
|+... ...+.+.++...+.+.+.++++.
T Consensus 79 vitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivv 122 (148)
T d1ldna1 79 VICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA 122 (148)
T ss_dssp EECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred EEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Confidence 87543 34455666777777777766544
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=86.35 E-value=0.64 Score=31.36 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=25.7
Q ss_pred CceEEEEccCCCCch-hhhHHHHHhCCceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGT-FHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~-~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
++||-++|+ |-.|- .+++.+.+.|..|- |-|...
T Consensus 1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~~Vs--GSD~~~ 35 (89)
T d1j6ua1 1 HMKIHFVGI-GGIGMSAVALHEFSNGNDVY--GSNIEE 35 (89)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTTCEEE--EECSSC
T ss_pred CcEEEEEeE-CHHHHHHHHHHHHhCCCeEE--EEeCCC
Confidence 478999999 55565 56788889998777 766554
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=86.01 E-value=1.6 Score=30.55 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=57.9
Q ss_pred ceEEEEccCCCCchhhhH-HHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTE-QAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k-~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
|||++.|..- .-....+ ...+++.++. -.+... . ....+..+ ++|+++++.....-.++++.+-
T Consensus 1 MKIl~~~~~~-~e~~~l~~~~~~~~~~v~--~~~~~~-~---------~~~~~~~~--~~d~ii~~~~~~~~~~vl~~l~ 65 (131)
T d1dxya2 1 MKIIAYGARV-DEIQYFKQWAKDTGNTLE--YHTEFL-D---------ENTVEWAK--GFDGINSLQTTPYAAGVFEKMH 65 (131)
T ss_dssp CEEEECSCCT-TTHHHHHHHHHHHCCEEE--ECSSCC-C---------TTGGGGGT--TCSEEEECCSSCBCHHHHHHHH
T ss_pred CEEEEEecCc-CcHHHHHHHHHHcCeEEE--EcCCCC-C---------HHHHHHhc--CCCEEEEecCCCCCHHHHhhcc
Confidence 5788887633 3333344 4446787776 221111 0 12222234 6899888877666666666666
Q ss_pred HcCCCEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 138 EAELDLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 138 e~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
+.+.+.|...+.|+.-=|++...+ +-|+|+
T Consensus 66 ~~~Lk~I~~~~vG~d~ID~~~a~~--~gI~V~ 95 (131)
T d1dxya2 66 AYGIKFLTIRNVGTDNIDMTAMKQ--YGIRLS 95 (131)
T ss_dssp HTTCCEEEESSSCCTTBCHHHHHH--TTCEEE
T ss_pred cCCeEEEEEccccccccccccccc--ceEEEE
Confidence 779999998889998777777665 444443
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=86.00 E-value=0.14 Score=34.20 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=29.8
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
...+..+|+|.|++|-.|....+.++..|.+++
T Consensus 28 ~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi 60 (77)
T d1o8ca2 28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVV 60 (77)
T ss_dssp CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEE
T ss_pred hccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEE
Confidence 346778899999999999999999999999998
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.36 Score=37.32 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=28.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP 92 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp 92 (182)
.++++|.|+++.+|+++++.+.+.|.+|+ .++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi--~~~r 38 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVI--ATDI 38 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEE--EEES
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEE--EEeC
Confidence 35588889999999999999999999999 4444
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.84 E-value=0.81 Score=32.87 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=59.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEee----------c--------cCCCCCeEecCcccccc-HHHHHhccCCc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGG----------V--------TPKKGGTEHLGLPVFNS-VAEAKAETKAN 118 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~Ag----------V--------dp~~~G~~i~GvPVy~S-v~ea~~~~~~D 118 (182)
-.||+|++.+|-.|...+..+.+.|+++. .. + ||-..+.. ..-..|.. ++.+.+..++|
T Consensus 3 G~rvaiit~sGG~~~l~aD~~~~~Gl~l~-~l~~~t~~~L~~~lp~~~~~~NPlD~~~~-~~~~~~~~~l~~~~~d~~vd 80 (163)
T d2csua3 3 GNKVAIMTNAGGPGVLTADELDKRGLKLA-TLEEKTIEELRSFLPPMAAVKNPVDMIAS-ARGEDYYRTAKLLLQDPNVD 80 (163)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHTTTCEEC-CCCHHHHHHHHHHSCTTCEESSEEECCTT-CCHHHHHHHHHHHHHSTTCS
T ss_pred CCeEEEEECChHHHHHHHHHHHHcCCccC-CCCHHHHHHHHHhCCCcccCCCcccccCC-CCHHHHHHHHHHHHcCCCcC
Confidence 46799999999999999999999997764 20 0 11100000 01123333 54455555788
Q ss_pred EEEE-eeCh--------HHHHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 119 ASVI-YVPP--------PFAAAAIMEAMEA--ELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 119 vaVd-fVpp--------~av~~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+++ +.++ +.+..+++.+.+. +.+.+++...|-..++..++.+.+ -+|+
T Consensus 81 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~~~~~~~~l~~~-Gip~ 140 (163)
T d2csua3 81 MLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKN-GIPT 140 (163)
T ss_dssp EEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTT-TCCE
T ss_pred EEEEeeccCCcccccHHHHHHHHHHHHHHhcCCCcEEEEECCCCChHHHHHHHHHC-CCCc
Confidence 7654 3322 2344455555444 345555555555555555555443 3665
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.80 E-value=1.2 Score=34.30 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=48.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~ 134 (182)
.++++|.|+++-+|+.+++.+.+.|.+|+ .++..... .. ...++..+.... ....|...........+
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~~Vi--l~~r~~~~--l~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 84 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGAHVV--VTARSKET--LQ-----KVVSHCLELGAASAHYIAGTMEDMTFAEQFVA 84 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEE--EEESCHHH--HH-----HHHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--HH-----HHHHHHhhhhcccchhhhhhhhhHHHHHHHHH
Confidence 35688999999999999999999999988 44443311 11 112222222222 23334455666666666
Q ss_pred HHHHc--CCCEEEE
Q 030169 135 EAMEA--ELDLVVC 146 (182)
Q Consensus 135 eAie~--GIk~VV~ 146 (182)
++.+. ++..+++
T Consensus 85 ~~~~~~g~~~~li~ 98 (269)
T d1xu9a_ 85 QAGKLMGGLDMLIL 98 (269)
T ss_dssp HHHHHHTSCSEEEE
T ss_pred HHHHHhCCcccccc
Confidence 66654 4666655
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=85.66 E-value=0.55 Score=35.90 Aligned_cols=85 Identities=9% Similarity=0.070 Sum_probs=54.6
Q ss_pred CCceEEEEccCC--CCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc-EEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITG--KNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN-ASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tG--kmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D-vaVdfVpp~av~~a 132 (182)
+.++++|.|++| -+|.++++.+.+.|.+|+.++.+.. .-..++++.++. .+. ...+........++
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~----------~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~ 73 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES----------LEKRVRPIAQELNSPYVYELDVSKEEHFKSL 73 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT----------THHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----------HHHHHHHHHhhCCceeEeeecccchhhHHHH
Confidence 356799999987 4999999999999999983343321 112233333221 222 34566777888888
Q ss_pred HHHHHHc--CCCEEEEeCCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~~ 152 (182)
++++.+. ++..+|+ .-|..
T Consensus 74 ~~~~~~~~g~id~lV~-nag~~ 94 (274)
T d2pd4a1 74 YNSVKKDLGSLDFIVH-SVAFA 94 (274)
T ss_dssp HHHHHHHTSCEEEEEE-CCCCC
T ss_pred HHHHHHHcCCCCeEEe-ecccc
Confidence 8888876 4555555 55543
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.28 E-value=0.22 Score=41.10 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=26.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
..+|+|||+ |+.|+..++.+.+.|.+||
T Consensus 36 gktvaIqGf-GnVG~~~A~~L~e~Gakvv 63 (293)
T d1hwxa1 36 DKTFAVQGF-GNVGLHSMRYLHRFGAKCV 63 (293)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE
Confidence 467999999 9999999999999999999
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.78 E-value=0.59 Score=35.25 Aligned_cols=82 Identities=17% Similarity=0.102 Sum_probs=49.9
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEe-------eChHHHHHHH
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIY-------VPPPFAAAAI 133 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdf-------Vpp~av~~a~ 133 (182)
++|.|+++.+|+.+++.+.+.|.+|+ ..+...... . -...+|..+....++..+. ...+.+.+..
T Consensus 4 AlVTGas~GIG~aia~~la~~G~~Vv--i~~r~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (266)
T d1mxha_ 4 AVITGGARRIGHSIAVRLHQQGFRVV--VHYRHSEGA-A-----QRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDII 75 (266)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEE--EEESSCHHH-H-----HHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCchHH-H-----HHHHHHHHhhcCCceEEEecccccchhHHHHHHHHH
Confidence 56779999999999999999999999 444332110 0 0113333333233333332 2245566666
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.++ ++..+|+ ..|+
T Consensus 76 ~~~~~~~g~iDilvn-nAG~ 94 (266)
T d1mxha_ 76 DCSFRAFGRCDVLVN-NASA 94 (266)
T ss_dssp HHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHhCCCCEEEE-CCcc
Confidence 666665 6888887 6554
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.76 E-value=0.28 Score=36.57 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=29.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
++.++|.|+++.+|+.+++.+.+.|.+|+..+.++.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~ 36 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE 36 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 356888899999999999999999999883444443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=84.62 E-value=3 Score=29.71 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=55.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCC--CCeEe----cCcc------ccccHHHHHhccCCcEEEEee
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKK--GGTEH----LGLP------VFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~--~G~~i----~GvP------Vy~Sv~ea~~~~~~DvaVdfV 124 (182)
.||.|+|+ |+.|..++-.+...+ -||+ -+|... ...+. +..+ ++..-.+..+ ++|+++++.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~--L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~--~adivvita 76 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELV--LIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVK--DCDVIVVTA 76 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEE--EECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGT--TCSEEEECC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEE--EEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhC--CCceEEEec
Confidence 58999998 999999988777666 3666 555333 11111 1223 2222223334 789999873
Q ss_pred C----------------hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHH
Q 030169 125 P----------------PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVI 158 (182)
Q Consensus 125 p----------------p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~ 158 (182)
. ...+.+.++...+.+.+.++++.+. |..-+..
T Consensus 77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN-Pvdv~t~ 125 (142)
T d1y6ja1 77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN-PVDIITY 125 (142)
T ss_dssp CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS-SHHHHHH
T ss_pred ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC-hHHHHHH
Confidence 2 2234466666777787776665554 5554444
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=84.34 E-value=0.68 Score=35.66 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=49.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCcEEEEeeChHHHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~DvaVdfVpp~av~~a~~eAie 138 (182)
.++|.|+++-.|+.+++.+.+.|.+|+ ..+..... . +.+++..+. ..+| .+..+.+.++++++.+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~--i~~r~~~~--~------~~~~~~~~~~~~~d----v~~~~~~~~~~~~~~~ 67 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVA--CHDESFKQ--K------DELEAFAETYPQLK----PMSEQEPAELIEAVTS 67 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEE--ECCGGGGS--H------HHHHHHHHHCTTSE----ECCCCSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHhhhCcEEEec----cCCHHHHHHHHHHHHH
Confidence 478999999999999999999999988 34332211 1 112222221 1344 4566778888888887
Q ss_pred c--CCCEEEE
Q 030169 139 A--ELDLVVC 146 (182)
Q Consensus 139 ~--GIk~VV~ 146 (182)
. ++..+|+
T Consensus 68 ~~G~iDiLVn 77 (252)
T d1zmta1 68 AYGQVDVLVS 77 (252)
T ss_dssp HHSCCCEEEE
T ss_pred HcCCCCEEEE
Confidence 7 6888875
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=84.03 E-value=0.24 Score=37.47 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=27.3
Q ss_pred ceE-EEEccCCCCchhhhHHHHHhCCceEEeeccCCC
Q 030169 59 TRV-ICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 59 trV-iVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
||| +|.|+++.+|+++++.+.+.|.+|+ .++.+.
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~--~~~~~~ 35 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIV--GIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE--EEESSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE--EEECCh
Confidence 355 5669999999999999999999988 555443
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.86 E-value=1 Score=39.13 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=58.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC----------------CCeE-----------e-cCcc---cc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK----------------GGTE-----------H-LGLP---VF 105 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~----------------~G~~-----------i-~GvP---Vy 105 (182)
+.+|+|+|+ |..|..+++.+.-.| .+|. -+|... .|+. + ..+. +-
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~it--ivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~ 101 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFT--IIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE 101 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEE--EECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEE--EEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc
Confidence 468999999 889999999999888 4444 444432 2210 0 0222 33
Q ss_pred ccHHHHHhc-----cCCcEEEEeeChHHHH-HHHHHHHHcCCCEEEEeCCCC
Q 030169 106 NSVAEAKAE-----TKANASVIYVPPPFAA-AAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 106 ~Sv~ea~~~-----~~~DvaVdfVpp~av~-~a~~eAie~GIk~VV~iTeG~ 151 (182)
.++++..+. .++|++|+...+.... .+-+.|.+++||.|.+-+.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~ 153 (529)
T d1yova1 102 ESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGL 153 (529)
T ss_dssp SCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCchhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 345554332 1589999887665554 566777788999987756554
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.83 E-value=0.42 Score=36.98 Aligned_cols=79 Identities=15% Similarity=0.075 Sum_probs=52.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
+.|+|.|+++-.|.++++.+.+.|.+|+ -........ .+.+.+..++...+ +-.|++.++.+.+.+++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vv-i~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~ 77 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVV-VNYGSSSKA--------AEEVVAELKKLGAQGVAIQADISKPSEVVALFDK 77 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESSCHHH--------HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEcCCChHH--------HHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHH
Confidence 3578889999999999999999999988 322222210 01122223323333 34577788999999999
Q ss_pred HHHc--CCCEEEE
Q 030169 136 AMEA--ELDLVVC 146 (182)
Q Consensus 136 Aie~--GIk~VV~ 146 (182)
+.+. ++..+|+
T Consensus 78 ~~~~~g~idilin 90 (259)
T d1ja9a_ 78 AVSHFGGLDFVMS 90 (259)
T ss_dssp HHHHHSCEEEEEC
T ss_pred HHHHcCCCcEEEe
Confidence 8877 4666665
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=83.75 E-value=0.22 Score=37.28 Aligned_cols=95 Identities=17% Similarity=0.111 Sum_probs=59.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---------------------------cCccccccHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---------------------------LGLPVFNSVAE 110 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---------------------------~GvPVy~Sv~e 110 (182)
-.||.|+|+ |.||+.++..+...|.+++ .+|+....-+. ..+..-.+.++
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~--l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPIL--MKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD 80 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEE--EECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEE--EEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc
Confidence 467999999 9999999999999999988 66654311000 01222222222
Q ss_pred HHhccCCcEEEEeeChHHHHH-HHHHHHHcCCC--EEEE-eCCCCCHHHHHH
Q 030169 111 AKAETKANASVIYVPPPFAAA-AIMEAMEAELD--LVVC-ITEGIPQHDMVI 158 (182)
Q Consensus 111 a~~~~~~DvaVdfVpp~av~~-a~~eAie~GIk--~VV~-iTeG~~~eD~~~ 158 (182)
+. ++|.++-.+|.+.-.. .+..-++.-.+ .|++ -|.+++..++..
T Consensus 81 -~~--~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~ 129 (186)
T d1wdka3 81 -FG--NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK 129 (186)
T ss_dssp -GG--GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG
T ss_pred -cc--ccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH
Confidence 33 6899999999876553 34444555433 2322 267888766544
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.88 E-value=0.33 Score=34.39 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=50.9
Q ss_pred CceEEEEccCCC---------CchhhhHHHHHhCCceEEeeccCCCCCe-------E-------ecCccccccHHHHHhc
Q 030169 58 NTRVICQGITGK---------NGTFHTEQAIEYGTKMVVGGVTPKKGGT-------E-------HLGLPVFNSVAEAKAE 114 (182)
Q Consensus 58 ~trViVvG~tGk---------mG~~v~k~~~~~g~~IV~AgVdp~~~G~-------~-------i~GvPVy~Sv~ea~~~ 114 (182)
..||+|.|.+=| ....+++.+.+.|.+|. ..||.-... + ......+++++|+.+
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~--~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~- 89 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELR--IFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA- 89 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEE--EECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH-
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhcccc--ccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh-
Confidence 468999999944 34466788888998877 788732110 0 113456789999998
Q ss_pred cCCcEEEEeeChHHHHHH
Q 030169 115 TKANASVIYVPPPFAAAA 132 (182)
Q Consensus 115 ~~~DvaVdfVpp~av~~a 132 (182)
+.|++|+.++...-.+.
T Consensus 90 -~~D~ivi~t~h~~f~~l 106 (136)
T d1mv8a3 90 -SSDVLVLGNGDELFVDL 106 (136)
T ss_dssp -HCSEEEECSCCGGGHHH
T ss_pred -hceEEEEEeCCHHHHHH
Confidence 79999999998875554
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=82.70 E-value=0.68 Score=33.67 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=57.3
Q ss_pred ceEEEEccCCCCchhhhHHHH-HhC--CceEEeeccC--CCCCeE----ec----Ccccc--ccHHHHHhccCCcEEEEe
Q 030169 59 TRVICQGITGKNGTFHTEQAI-EYG--TKMVVGGVTP--KKGGTE----HL----GLPVF--NSVAEAKAETKANASVIY 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~~g--~~IV~AgVdp--~~~G~~----i~----GvPVy--~Sv~ea~~~~~~DvaVdf 123 (182)
+||.|+|++|+.|+.++-.+. +.+ -+|+ -+|- ...|+. +. ..+.+ .+-.+..+ +.|++|+.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~--L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~--~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELS--LYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALE--GADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEE--EECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHT--TCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEE--EecccccchhHHHHHHCCccccCCcEEEcCCCccccC--CCCEEEEC
Confidence 689999999999998876554 333 4565 5553 222210 11 12222 22233455 78999987
Q ss_pred e----------------ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030169 124 V----------------PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 124 V----------------pp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l 159 (182)
. +...+.+.++...+.+.+.++++.+. |..-+..+
T Consensus 77 aG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN-PvD~m~~~ 127 (145)
T d2cmda1 77 AGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN-PVNTTVAI 127 (145)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS-SHHHHHHH
T ss_pred CCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC-CchHHHHH
Confidence 6 34456677777888887776664443 55544443
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=81.94 E-value=0.53 Score=35.71 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=25.9
Q ss_pred CCceEEEEccCCC--CchhhhHHHHHhCCceE
Q 030169 57 KNTRVICQGITGK--NGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 57 ~~trViVvG~tGk--mG~~v~k~~~~~g~~IV 86 (182)
+.++++|.|+.|. +|.++++.+.+.|.+|+
T Consensus 5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vi 36 (268)
T d2h7ma1 5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLV 36 (268)
T ss_dssp TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEE
Confidence 3467999998764 89999999999999988
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.66 E-value=1.7 Score=33.02 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~ 133 (182)
..|+|.|+++-+|.++++.+.+.|. .|+ ........ ++++.+.. ++. +.+|.+.++.+.+++
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi--~~~R~~~~-----------~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~ 70 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHII--ATARDVEK-----------ATELKSIKDSRVHVLPLTVTCDKSLDTFV 70 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEE--EEESSGGG-----------CHHHHTCCCTTEEEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEE--EEeCCHHH-----------HHHHHHhhCCceEEEEEecCCHHHHHHHH
Confidence 4588889999999999999998883 566 33332211 22332221 222 344677888888888
Q ss_pred HHHHHc----CCCEEEEeCCCC
Q 030169 134 MEAMEA----ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~----GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 71 ~~i~~~~~~~~idilin-nAG~ 91 (250)
T d1yo6a1 71 SKVGEIVGSDGLSLLIN-NAGV 91 (250)
T ss_dssp HHHHHHHGGGCCCEEEE-CCCC
T ss_pred HHHHHHhCCCCeEEEEE-cCcc
Confidence 887763 4888887 6554
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=81.59 E-value=0.95 Score=32.81 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=25.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTP 92 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp 92 (182)
+||.|+|++|+-|+.++-.+...+ -+++ -+|.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~--L~Di 34 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVV--FVDI 34 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEE--EECC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEE--EEec
Confidence 589999988999999988887766 3555 6663
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=81.33 E-value=1.9 Score=32.09 Aligned_cols=100 Identities=8% Similarity=-0.022 Sum_probs=59.8
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh---C----CceEEeeccCCCCCeE---------------ecCccccccHHHHHh
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY---G----TKMVVGGVTPKKGGTE---------------HLGLPVFNSVAEAKA 113 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~---g----~~IV~AgVdp~~~G~~---------------i~GvPVy~Sv~ea~~ 113 (182)
.+..||.|+|++|..|+.++-.+..- | .++. -+|-...... ...+-+.++..++.+
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~--L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~ 99 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALK--LLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFE 99 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEE--EECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEE--EecCccccchhcchhhhhcccccccccCccccccchhhcc
Confidence 35678999999999999988766642 2 1222 3332221110 114455666788777
Q ss_pred ccCCcEEEEeeC----------------hHHHHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHH
Q 030169 114 ETKANASVIYVP----------------PPFAAAAIMEAMEAEL-DLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 114 ~~~~DvaVdfVp----------------p~av~~a~~eAie~GI-k~VV~iTeG~~~eD~~~l~ 160 (182)
+.|++|+.-- ...+.+.++...+..- ..+|.+.+. |+.-+..+.
T Consensus 100 --~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N-Pvd~~t~ia 160 (175)
T d7mdha1 100 --DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN-PCNTNALIC 160 (175)
T ss_dssp --TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS-SHHHHHHHH
T ss_pred --CCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC-cHHHHHHHH
Confidence 8899998762 3445666666666443 343433444 777666654
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.88 E-value=1.5 Score=33.25 Aligned_cols=80 Identities=5% Similarity=0.059 Sum_probs=51.0
Q ss_pred eEEEEccCCCCchhhhHHHHH---hCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc-EEEEeeChHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D-vaVdfVpp~av~~a~~ 134 (182)
+|+|.|+++-.|+++++.+.+ .|.+|+.++-++.+. ..++++.+.. ++. +.+|.+.++.+.++++
T Consensus 4 tilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~----------~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 73 (248)
T d1snya_ 4 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA----------KELEDLAKNHSNIHILEIDLRNFDAYDKLVA 73 (248)
T ss_dssp EEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC----------HHHHHHHHHCTTEEEEECCTTCGGGHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH----------HHHHHHHhcCCcEEEEEEEeccHHHHHHHHh
Confidence 499999999999999998874 567787233333321 1234433321 221 3457778888888888
Q ss_pred HH--HH--cCCCEEEEeCCC
Q 030169 135 EA--ME--AELDLVVCITEG 150 (182)
Q Consensus 135 eA--ie--~GIk~VV~iTeG 150 (182)
+. .. .++..+|+ -.|
T Consensus 74 ~i~~~~~~~~iDiLvn-NAg 92 (248)
T d1snya_ 74 DIEGVTKDQGLNVLFN-NAG 92 (248)
T ss_dssp HHHHHHGGGCCSEEEE-CCC
T ss_pred hhHHHhhcCCcceEEe-ecc
Confidence 64 32 35888887 444
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=80.42 E-value=0.46 Score=37.42 Aligned_cols=29 Identities=38% Similarity=0.562 Sum_probs=25.5
Q ss_pred CCceEEEEccCCCCchhhhHHHH-HhCCceE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAI-EYGTKMV 86 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~-~~g~~IV 86 (182)
+..+|+|||+ |+.|+.+++.+. +.|.+++
T Consensus 30 ~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv 59 (234)
T d1b26a1 30 KKATVAVQGF-GNVGQFAALLISQELGSKVV 59 (234)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCceE
Confidence 4578999999 999999999885 6799998
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=80.21 E-value=1 Score=34.12 Aligned_cols=89 Identities=16% Similarity=0.027 Sum_probs=53.0
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCc-eEEeeccCCCCCeEecCccccccHHHHHhccCCcEE---EEeeChHHH
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTK-MVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS---VIYVPPPFA 129 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~-IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dva---VdfVpp~av 129 (182)
+++|+..++|.|++|-+|+.+++.+.+.|.+ |+ -+...... ... .-..++++ ++..+++. .|.+.++.+
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vv--l~~R~~~~--~~~--~~~~~~~l-~~~g~~v~~~~~Dv~d~~~~ 77 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLL--LVSRSGPD--ADG--AGELVAEL-EALGARTTVAACDVTDRESV 77 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEE--EEESSGGG--STT--HHHHHHHH-HHTTCEEEEEECCTTCHHHH
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEE--EEeCCccC--HHH--HHHHHHHH-HhccccccccccccchHHHH
Confidence 5788888999999999999999999999975 55 33322100 000 11123332 22234443 356677777
Q ss_pred HHHHHHHHHcC-CCEEEEeCCC
Q 030169 130 AAAIMEAMEAE-LDLVVCITEG 150 (182)
Q Consensus 130 ~~a~~eAie~G-Ik~VV~iTeG 150 (182)
.++++++.+.+ +..|+. ..|
T Consensus 78 ~~~~~~i~~~~~i~~vv~-~ag 98 (259)
T d2fr1a1 78 RELLGGIGDDVPLSAVFH-AAA 98 (259)
T ss_dssp HHHHHTSCTTSCEEEEEE-CCC
T ss_pred HHhhcccccccccccccc-ccc
Confidence 77766654443 444555 433
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.01 E-value=0.24 Score=37.54 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=67.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
++|+|+|. |+-|+.+++.+..+|.++++.-+||.+.=+. ..|+.+- +++|+.. ..|+.+-.+.-.-+ +-.+-+
T Consensus 25 k~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~--~adivvtaTGn~~v--I~~eh~ 98 (163)
T d1li4a1 25 KVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQ--EGNIFVTTTGCIDI--ILGRHF 98 (163)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTT--TCSEEEECSSCSCS--BCHHHH
T ss_pred CEEEEecc-ccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhh--hccEEEecCCCccc--hhHHHH
Confidence 45999998 9999999999999999998567777542211 2366665 5777777 68988777664322 223334
Q ss_pred Hc-CCCEEEEeCCCCCHH-HHHHHHHHhc
Q 030169 138 EA-ELDLVVCITEGIPQH-DMVINFTRVN 164 (182)
Q Consensus 138 e~-GIk~VV~iTeG~~~e-D~~~l~~~ak 164 (182)
++ .=..|++-..+|..| |+..|.+.+.
T Consensus 99 ~~MKdgaIL~N~Ghfd~EId~~~L~~~~~ 127 (163)
T d1li4a1 99 EQMKDDAIVCNIGHFDVEIDVKWLNENAV 127 (163)
T ss_dssp TTCCTTEEEEECSSSTTSBCHHHHHHHCS
T ss_pred HhccCCeEEEEeccccceecHHHHhhccc
Confidence 33 445566656777655 7777877663
|