Citrus Sinensis ID: 030176

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLSFSSCISIPFSYFGHKKI
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccHHccEEEEEEEcccccHHHHHHHHHHHHccEEEEHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHccccccccEEEEEEccHHHHHHHHHccccccccEcccccHHHHHHHHHHHHHHccHHHHHHHccc
Coil and Loop (DISEMBL)
mgtvvetpvkeadatvtvkkpTVVFvlggpgsgkgtqcaNIVEHfgythlsaGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEEsgndkflidgfprneenRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQvrqklpfswgVFCLFIMLSFsscisipfsyfghkki
Flexible Loop (DISEMBL)
mgtvvetpvkeadatvtvkkptvvFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQnmikegkivpSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLSFSSCIsipfsyfghkki
Low Complexity Region (SEG)
MGTVVETPVKEADAtvtvkkptvvfvLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLSFSSCISIPFSYFGHKKI
Disordered region (IsUnstruct)
*************ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK******TMIQNMIKEGKIVPSEVTIKLLQK*******DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLSFSSCISIPFSYFG****
Disordered Region (DISOPRED)
**********************VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK*****GTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLSFSSCISIPFSYFGHKKI
Disordered Region (DISEMBL)
**********EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLSFSSCISIPFSYFGHKKI
Disordered Region (DISPRO)
**************TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLSFSSCISIPFSYFGHKKI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLSFSSCISIPFSYFGHKKI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
O04905	202	UMP/CMP kinase OS=Arabido	yes	no	0.747	0.673	0.860	1e-64
O24464	231	Adenylate kinase OS=Prunu	N/A	no	0.703	0.554	0.695	6e-47
P20425	195	UMP-CMP kinase OS=Dictyos	yes	no	0.697	0.651	0.620	2e-36
Q5ZKE7	196	UMP-CMP kinase OS=Gallus	yes	no	0.697	0.647	0.585	2e-35
Q7ZX23	193	UMP-CMP kinase OS=Xenopus	N/A	no	0.697	0.658	0.562	1e-34
Q28H12	196	UMP-CMP kinase OS=Xenopus	no	no	0.697	0.647	0.570	3e-34
Q7ZWE9	196	UMP-CMP kinase OS=Danio r	no	no	0.697	0.647	0.585	3e-34
P30085	196	UMP-CMP kinase OS=Homo sa	no	no	0.697	0.647	0.548	6e-33
Q9DBP5	196	UMP-CMP kinase OS=Mus mus	no	no	0.697	0.647	0.548	7e-33
Q4KM73	196	UMP-CMP kinase OS=Rattus	no	no	0.697	0.647	0.548	9e-33

>sp|O04905|UMPK_ARATH UMP/CMP kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1

 Score =  245 bits (626), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 128/136 (94%)

Query: 14  ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           A  + KKPTV+FVLGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNM
Sbjct: 7   ANGSGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNM 66

Query: 74  IKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS 133
           IKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC 
Sbjct: 67  IKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCP 126

Query: 134 EEEMERRILNRNQVRQ 149
           EEEME+R+L RNQ R+
Sbjct: 127 EEEMEKRLLGRNQGRE 142

Furnishes the cell with pyrimidines. Accepts UMP and CMP as phosphate acceptors with high activity; does not act on dCMP and dUMP.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 1EC: 4

>sp|O24464|KAD_PRUAR Adenylate kinase OS=Prunus armeniaca PE=2 SV=1

 Score =  186 bits (473), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 104/128 (81%)

Query: 21  PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV 80
           P V FVLGGPGSGKGTQCA IVE FG+TH+SAGDLLR EI SGS  G++I + I+EGKIV
Sbjct: 47  PFVTFVLGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIASGSAYGSVILSTIREGKIV 106

Query: 81  PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
           PS+VT++L+QK ME S N KFLIDGFPR+EENR AFE     EP+ VLFFDC E+EM +R
Sbjct: 107 PSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGAEPDVVLFFDCPEQEMVKR 166

Query: 141 ILNRNQVR 148
           +LNRNQ R
Sbjct: 167 VLNRNQGR 174

This small ubiquitous enzyme is essential for maintenance and cell growth.

Prunus armeniaca (taxid: 36596)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|P20425|KCY_DICDI UMP-CMP kinase OS=Dictyostelium discoideum GN=pyrK PE=1 SV=2

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/129 (62%), Positives = 99/129 (76%), Gaps = 2/129 (1%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+I
Sbjct: 6   KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEI 65

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEM 137
           VPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M
Sbjct: 66  VPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVM 125

Query: 138 ERRILNRNQ 146
            +R+L R +
Sbjct: 126 TQRLLKRGE 134

This UMP-CMP kinase uses preferentially ATP as phosphate donor and is specific for UMP and CMP.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q5ZKE7|KCY_CHICK UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 95/135 (70%), Gaps = 8/135 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+
Sbjct: 2   KPVVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGE 61

Query: 79  IVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ 146
           C  E    R L R +
Sbjct: 122 CDNEICIGRCLERGK 136

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q7ZX23|KCY_XENLA UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 93/135 (68%), Gaps = 8/135 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++GK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGK 61

Query: 79  IVPSEVTIKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LLQ+AME     ++   KFLIDGFPRNE+N   +E     K +  FVLFFD
Sbjct: 62  IVPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ 146
           C  E    R L R +
Sbjct: 122 CDNETCIERCLERGK 136

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q28H12|KCY_XENTR UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 95/135 (70%), Gaps = 8/135 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++G+
Sbjct: 2   KPFVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGR 61

Query: 79  IVPSEVTIKLLQKAMEES----GND-KFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LLQ+AME++    GN  KFLIDGFPRNE+N   +E     K +  FVLFFD
Sbjct: 62  IVPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ 146
           C  E    R L R +
Sbjct: 122 CDNETCIERCLERGK 136

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q7ZWE9|KCY_DANRE UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 98/135 (72%), Gaps = 8/135 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGK
Sbjct: 2   KPQVVFVLGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES--GNDK---FLIDGFPRNEENRAAF--EAVTKIEPEFVLFFD 131
           IVP ++TI LL+KAMEE+   ++K   FLIDGFPRN++N   +  E   K + +FVLFFD
Sbjct: 62  IVPVQITINLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFD 121

Query: 132 CSEEEMERRILNRNQ 146
           CS E    R L R +
Sbjct: 122 CSNEVCIDRCLERGK 136

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|P30085|KCY_HUMAN UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3

 Score =  140 bits (352), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 94/135 (69%), Gaps = 8/135 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ 146
           C+ E    R L R +
Sbjct: 122 CNNEICIERCLERGK 136

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q9DBP5|KCY_MOUSE UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 94/135 (69%), Gaps = 8/135 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ 146
           C+ E    R L R +
Sbjct: 122 CNNEICIERCLERGK 136

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q4KM73|KCY_RAT UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2

 Score =  139 bits (350), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 94/135 (69%), Gaps = 8/135 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ 146
           C+ E    R L R +
Sbjct: 122 CNNEICIDRCLERGK 136

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
255571119	210	uridylate kinase plant, putative [Ricinu	0.802	0.695	0.883	1e-68
224136530	199	predicted protein [Populus trichocarpa]	0.719	0.658	0.946	7e-67
118488800	199	unknown [Populus trichocarpa]	0.719	0.658	0.938	3e-66
449432344	209	PREDICTED: UMP/CMP kinase-like [Cucumis	0.813	0.708	0.825	3e-66
351726572	237	uncharacterized protein LOC100306603 [Gl	0.813	0.624	0.838	8e-66
351721579	207	uncharacterized protein LOC100500111 [Gl	0.813	0.714	0.845	1e-65
357513083	208	Uridylate kinase [Medicago truncatula] g	0.818	0.716	0.805	1e-65
224067399	199	predicted protein [Populus trichocarpa]	0.719	0.658	0.916	2e-65
225454048	210	PREDICTED: uridylate kinase isoform 1 [V	0.818	0.709	0.826	5e-65
388503986	211	unknown [Lotus japonicus]	0.818	0.706	0.815	3e-64

>gi|255571119|ref|XP_002526510.1| uridylate kinase plant, putative [Ricinus communis] gi|223534185|gb|EEF35901.1| uridylate kinase plant, putative [Ricinus communis]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/146 (88%), Positives = 135/146 (92%)

Query: 3   TVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62
           +VV    KE +  V  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS
Sbjct: 4   SVVGVARKEENGDVVEKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 63

Query: 63  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           GSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE+VTKI
Sbjct: 64  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFESVTKI 123

Query: 123 EPEFVLFFDCSEEEMERRILNRNQVR 148
            PEFVLFFDCSEEEMERR+L+RNQ R
Sbjct: 124 VPEFVLFFDCSEEEMERRLLSRNQGR 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136530|ref|XP_002326883.1| predicted protein [Populus trichocarpa] gi|222835198|gb|EEE73633.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (659), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 124/131 (94%), Positives = 128/131 (97%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTIKLLQKAM++SGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFFDC EEEME
Sbjct: 69  IVPSEVTIKLLQKAMQDSGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFDCPEEEME 128

Query: 139 RRILNRNQVRQ 149
           RRIL+RNQ R+
Sbjct: 129 RRILSRNQGRE 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488800|gb|ABK96210.1| unknown [Populus trichocarpa]

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/131 (93%), Positives = 127/131 (96%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTI LLQKAM++SGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFFDC EEEME
Sbjct: 69  IVPSEVTINLLQKAMQDSGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFDCPEEEME 128

Query: 139 RRILNRNQVRQ 149
           RRIL+RNQ R+
Sbjct: 129 RRILSRNQGRE 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432344|ref|XP_004133959.1| PREDICTED: UMP/CMP kinase-like [Cucumis sativus] gi|449515542|ref|XP_004164808.1| PREDICTED: UMP/CMP kinase-like [Cucumis sativus]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/149 (82%), Positives = 137/149 (91%), Gaps = 1/149 (0%)

Query: 1   MGTVVET-PVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59
           MGTVV+  P+KE + ++  KKPTVVFVLGGPGSGKGTQCANIV+HFGYTHLSAGDLLRAE
Sbjct: 1   MGTVVDAAPIKETNGSLAEKKPTVVFVLGGPGSGKGTQCANIVQHFGYTHLSAGDLLRAE 60

Query: 60  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
           IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ+A+EE+GN+KFLIDGFPRNEENRAAFE V
Sbjct: 61  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQRAIEETGNEKFLIDGFPRNEENRAAFEVV 120

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQVR 148
           T IEP  VLFFDC EEEME+R+L+RN+ R
Sbjct: 121 TGIEPSIVLFFDCPEEEMEKRLLSRNEGR 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726572|ref|NP_001237387.1| uncharacterized protein LOC100306603 [Glycine max] gi|255629041|gb|ACU14865.1| unknown [Glycine max]

 Score =  254 bits (650), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 125/149 (83%), Positives = 136/149 (91%), Gaps = 1/149 (0%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV E   K+A+ ++  K P+VVFVLGGPGSGKGTQCANIV++FGYTHLSAGDLLRAEI
Sbjct: 1   MGTV-EAANKDANGSLLEKNPSVVFVLGGPGSGKGTQCANIVQNFGYTHLSAGDLLRAEI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE VT
Sbjct: 60  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVT 119

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQVRQ 149
            IEP FVLFFDC EEEMERR+L+RNQ R+
Sbjct: 120 GIEPAFVLFFDCPEEEMERRLLSRNQGRE 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721579|ref|NP_001236958.1| uncharacterized protein LOC100500111 [Glycine max] gi|255629285|gb|ACU14987.1| unknown [Glycine max]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/149 (84%), Positives = 136/149 (91%), Gaps = 1/149 (0%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV E   K+A+ ++  K PTVVFVLGGPGSGKGTQCANIVE+FGYTHLSAGDLLRAEI
Sbjct: 1   MGTV-EAANKDANGSLLEKNPTVVFVLGGPGSGKGTQCANIVENFGYTHLSAGDLLRAEI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE VT
Sbjct: 60  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVT 119

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQVRQ 149
            IEP FVLFF+C EEEMERR+L+RNQ R+
Sbjct: 120 GIEPAFVLFFECPEEEMERRLLSRNQGRE 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513083|ref|XP_003626830.1| Uridylate kinase [Medicago truncatula] gi|217075148|gb|ACJ85934.1| unknown [Medicago truncatula] gi|355520852|gb|AET01306.1| Uridylate kinase [Medicago truncatula] gi|388507198|gb|AFK41665.1| unknown [Medicago truncatula]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/149 (80%), Positives = 136/149 (91%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV+E   K+ + +V  K PTVVFVLGGPGSGKGTQCAN+VEHFG+THLSAGDLLRAEI
Sbjct: 1   MGTVIEAANKDTNGSVLNKNPTVVFVLGGPGSGKGTQCANVVEHFGFTHLSAGDLLRAEI 60

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTI+LLQ+A++++GNDKFLIDGFPRNEENRAAFE VT
Sbjct: 61  KSGSENGTMIQNMIKEGKIVPSEVTIRLLQQAIKDNGNDKFLIDGFPRNEENRAAFERVT 120

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQVRQ 149
            IEP FVL+FDC EEEMERR+L+RNQ R+
Sbjct: 121 GIEPAFVLYFDCPEEEMERRLLSRNQGRE 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067399|ref|XP_002302480.1| predicted protein [Populus trichocarpa] gi|118488191|gb|ABK95915.1| unknown [Populus trichocarpa] gi|222844206|gb|EEE81753.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/131 (91%), Positives = 127/131 (96%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKP V+FVLGGPGSGKGTQCAN+VEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPAVIFVLGGPGSGKGTQCANVVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFF+C EEEME
Sbjct: 69  IVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFNCPEEEME 128

Query: 139 RRILNRNQVRQ 149
           +RIL+RNQ R+
Sbjct: 129 KRILSRNQGRE 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454048|ref|XP_002263322.1| PREDICTED: uridylate kinase isoform 1 [Vitis vinifera] gi|359489116|ref|XP_003633878.1| PREDICTED: uridylate kinase isoform 2 [Vitis vinifera] gi|359489119|ref|XP_003633879.1| PREDICTED: uridylate kinase isoform 3 [Vitis vinifera] gi|297744838|emb|CBI38106.3| unnamed protein product [Vitis vinifera]

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/150 (82%), Positives = 134/150 (89%), Gaps = 1/150 (0%)

Query: 1   MGTVVETPVKEADATVTV-KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59
           MG+  E+ +KE +  +   KK  VVFVLGGPGSGKGTQCANIV+HFGYTHLSAGDLLRAE
Sbjct: 1   MGSAPESVIKETNENLLAEKKVKVVFVLGGPGSGKGTQCANIVKHFGYTHLSAGDLLRAE 60

Query: 60  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
           IKSGSENG MIQ+MIKEGKIVPSEVTIKLLQ+A+ E  NDKFLIDGFPRNEENRAAFEAV
Sbjct: 61  IKSGSENGNMIQSMIKEGKIVPSEVTIKLLQRAILEDSNDKFLIDGFPRNEENRAAFEAV 120

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQVRQ 149
           TKIEPEFVLFFDCSEEEMERRILNRNQ R+
Sbjct: 121 TKIEPEFVLFFDCSEEEMERRILNRNQGRE 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503986|gb|AFK40059.1| unknown [Lotus japonicus]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 124/152 (81%), Positives = 134/152 (88%), Gaps = 3/152 (1%)

Query: 1   MGTVVETPVKEA---DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
           MGTVVE   K+A   + ++  K  TVVFVLGGPGSGKGTQC+NIV+HFGYTHLSAGDLLR
Sbjct: 1   MGTVVEAANKDAANGNGSILNKNLTVVFVLGGPGSGKGTQCSNIVKHFGYTHLSAGDLLR 60

Query: 58  AEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFE 117
           AEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ+AM E+GNDKFLIDGFPRNEENRAAFE
Sbjct: 61  AEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQRAMLENGNDKFLIDGFPRNEENRAAFE 120

Query: 118 AVTKIEPEFVLFFDCSEEEMERRILNRNQVRQ 149
            VT IEP FVLFFDC EEEMERR+L RNQ R+
Sbjct: 121 KVTGIEPTFVLFFDCPEEEMERRLLGRNQGRE 152

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:1005716878	208	PYR6 [Arabidopsis thaliana (ta	0.675	0.591	0.886	1.8e-55
TAIR|locus:2101472	204	AT3G60180 [Arabidopsis thalian	0.818	0.730	0.691	5.1e-51
TAIR|locus:2122644	249	AT4G25280 [Arabidopsis thalian	0.670	0.489	0.704	1.5e-42
DICTYBASE|DDB_G0287495	195	pyrK "uridine monophosphate/cy	0.659	0.615	0.606	6.5e-35
FB|FBgn0028833	304	Dak1 "Dak1" [Drosophila melano	0.659	0.394	0.552	2.6e-31
UNIPROTKB|Q5ZKE7	196	CMPK1 "UMP-CMP kinase" [Gallus	0.659	0.612	0.570	6.9e-31
ZFIN|ZDB-GENE-040426-2113	225	cmpk "cytidylate kinase" [Dani	0.659	0.533	0.570	3.8e-30
UNIPROTKB|G4MTX2	329	MGG_01594 "Uridylate kinase" [	0.653	0.361	0.541	3.4e-29
UNIPROTKB|P30085	196	CMPK1 "UMP-CMP kinase" [Homo s	0.659	0.612	0.539	5.6e-29
MGI|MGI:1913838	196	Cmpk1 "cytidine monophosphate	0.659	0.612	0.539	5.6e-29

TAIR|locus:1005716878 PYR6 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 109/123 (88%), Positives = 118/123 (95%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI
Sbjct:    20 LGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 79

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146
             KLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQ
Sbjct:    80 KLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQ 139

Query:   147 VRQ 149
              R+
Sbjct:   140 GRE 142

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS;IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0004127 "cytidylate kinase activity" evidence=IDA

GO:0009173 "pyrimidine ribonucleoside monophosphate metabolic process" evidence=TAS

TAIR|locus:2101472 AT3G60180 [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 103/149 (69%), Positives = 117/149 (78%)

Query:     1 MGTVVETPVKEADAXXXXXXXXXXXXLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
             M T ++ P K+               LGGPGSGKGTQCAN+V+HF YTH SAGDLLRAEI
Sbjct:     1 METPIDAPNKDEHECPRWKKSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEI 60

Query:    61 KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
             KSGSE G MIQ+MI EG+IVPSE+T+KLL KAMEESGNDKFLIDGFPRNEENR  FE V 
Sbjct:    61 KSGSEFGAMIQSMIAEGRIVPSEITVKLLCKAMEESGNDKFLIDGFPRNEENRNVFENVA 120

Query:   121 KIEPEFVLFFDCSEEEMERRILNRNQVRQ 149
             +IEP FVLFFDC EEE+ERRI++RNQ R+
Sbjct:   121 RIEPAFVLFFDCPEEELERRIMSRNQGRE 149

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2122644 AT4G25280 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 86/122 (70%), Positives = 98/122 (80%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQC  IVE FG  HLSAGDLLR EI   +ENG MI N+IK+GKIVPSEVT+
Sbjct:    49 LGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGKIVPSEVTV 108

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146
             KL+QK +E S N KFLIDGFPR EENR AFE + + +P+ VLFFDC EEEM +R+LNRNQ
Sbjct:   109 KLIQKELESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMVKRVLNRNQ 168

Query:   147 VR 148
              R
Sbjct:   169 GR 170

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

DICTYBASE|DDB_G0287495 pyrK "uridine monophosphate/cytidine monophosphate kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 74/122 (60%), Positives = 93/122 (76%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+
Sbjct:    13 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 72

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
             KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R
Sbjct:    73 KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 132

Query:   145 NQ 146
              +
Sbjct:   133 GE 134

GO:0043100 "pyrimidine nucleobase salvage" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0046705 "CDP biosynthetic process" evidence=IDA

GO:0043173 "nucleotide salvage" evidence=IDA

GO:0033862 "UMP kinase activity" evidence=IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA;IDA

GO:0006225 "UDP biosynthetic process" evidence=IDA

GO:0005622 "intracellular" evidence=IC

GO:0004127 "cytidylate kinase activity" evidence=IEA;IDA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0028833 Dak1 "Dak1" [Drosophila melanogaster (taxid:7227)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 68/123 (55%), Positives = 89/123 (72%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQC+ IV+ F +THLSAGDLLR E  + GSE G +I++ I+ GKIVP EVT
Sbjct:   120 LGGPGAGKGTQCSRIVDRFQFTHLSAGDLLREERSREGSEFGNLIEDYIRNGKIVPVEVT 179

Query:    86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEMERRILN 143
               LL+ AM+ SG  +FLIDGFPRN++N   +  +   K++ +FVLFFDC E+   +R L 
Sbjct:   180 CSLLENAMKASGKSRFLIDGFPRNQDNLDGWNRQMSEKVDFQFVLFFDCGEDVCVKRCLG 239

Query:   144 RNQ 146
             R Q
Sbjct:   240 RGQ 242

GO:0004127 "cytidylate kinase activity" evidence=ISS;IDA;NAS

GO:0009041 "uridylate kinase activity" evidence=IDA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q5ZKE7 CMPK1 "UMP-CMP kinase" [Gallus gallus (taxid:9031)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 73/128 (57%), Positives = 89/128 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+IVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEIVPVEIT 68

Query:    86 IKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFDC  E   
Sbjct:    69 ISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDCDNEICI 128

Query:   139 RRILNRNQ 146
              R L R +
Sbjct:   129 GRCLERGK 136

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-2113 cmpk "cytidylate kinase" [Danio rerio (taxid:7955)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 73/128 (57%), Positives = 92/128 (71%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGKIVP ++T
Sbjct:    38 LGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGKIVPVQIT 97

Query:    86 IKLLQKAMEES--GNDK---FLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEME 138
             I LL+KAMEE+   ++K   FLIDGFPRN++N   +  E   K + +FVLFFDCS E   
Sbjct:    98 INLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFDCSNEVCI 157

Query:   139 RRILNRNQ 146
              R L R +
Sbjct:   158 DRCLERGK 165

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|G4MTX2 MGG_01594 "Uridylate kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 72/133 (54%), Positives = 90/133 (67%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA +VE +G+THLSAGDLLRAE  + GS+ G +I++ I+ G IVP EVT
Sbjct:   134 LGGPGAGKGTQCAQLVERYGFTHLSAGDLLRAEQERPGSQFGELIKDCIRNGAIVPMEVT 193

Query:    86 IKLLQKAM----EE--------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS 133
             ++LL+ AM    EE        S   KFLIDGFPR  +    FE  T    +FVLF+DC 
Sbjct:   194 VQLLENAMTDVVEENKKKSRNGSSKAKFLIDGFPRKMDQALKFEE-TVCPAKFVLFYDCP 252

Query:   134 EEEMERRILNRNQ 146
             E EMERR+L R +
Sbjct:   253 EAEMERRLLERGK 265

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P30085 CMPK1 "UMP-CMP kinase" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 69/128 (53%), Positives = 89/128 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68

Query:    86 IKLLQKAMEES--GN---DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++ M+++   N   +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct:    69 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128

Query:   139 RRILNRNQ 146
              R L R +
Sbjct:   129 ERCLERGK 136

GO:0005524 "ATP binding" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0006225 "UDP biosynthetic process" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=IEA

GO:0006240 "dCDP biosynthetic process" evidence=IEA

GO:0018963 "phthalate metabolic process" evidence=IEA

GO:0022602 "ovulation cycle process" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0046705 "CDP biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0006222 "UMP biosynthetic process" evidence=TAS

MGI|MGI:1913838 Cmpk1 "cytidine monophosphate (UMP-CMP) kinase 1" [Mus musculus (taxid:10090)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 69/128 (53%), Positives = 89/128 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68

Query:    86 IKLLQKAMEES--GN---DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++ M+++   N   +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct:    69 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128

Query:   139 RRILNRNQ 146
              R L R +
Sbjct:   129 ERCLERGK 136

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0006225 "UDP biosynthetic process" evidence=ISO

GO:0006227 "dUDP biosynthetic process" evidence=ISO

GO:0006240 "dCDP biosynthetic process" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=ISO

GO:0046705 "CDP biosynthetic process" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZKE7	KCY_CHICK	2, ., 7, ., 4, ., 1, 4	0.5851	0.6978	0.6479	yes	no
Q2KIW9	KCY_BOVIN	2, ., 7, ., 4, ., 1, 4	0.5407	0.6978	0.6479	yes	no
P15700	UMPK_YEAST	2, ., 7, ., 4, ., -	0.5116	0.6813	0.6078	yes	no
P20425	KCY_DICDI	2, ., 7, ., 4, ., 1, 4	0.6201	0.6978	0.6512	yes	no
O04905	UMPK_ARATH	2, ., 7, ., 4, ., 1, 4	0.8602	0.7472	0.6732	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.921
4th Layer	2.7.4.14	0.914
3rd Layer	2.7.4.3	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_400378	SubName- Full=Putative uncharacterized protein; (200 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400106	RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa)						•	•		0.904
	eugene3.00051017	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (810 aa)						•			0.904
	fgenesh4_pm.C_LG_V000114	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (817 aa)						•			0.904
	estExt_fgenesh4_pg.C_LG_VII0648	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (813 aa)						•			0.904
	fgenesh4_pg.C_LG_XII000913	hypothetical protein (152 aa)						•	•		0.903
	fgenesh4_pg.C_LG_I002334	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)						•			0.903
	estExt_Genewise1_v1.C_880196	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)						•			0.903
	gw1.VIII.327.1	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (342 aa)						•			0.902
	gw1.II.1445.1	SubName- Full=Putative uncharacterized protein; (164 aa)						•	•		0.902
	gw1.XIII.2192.1	polyribonucleotide nucleotidyltransferase (EC-2.7.7.8) (853 aa)						•	•		0.901

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	3e-79
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	6e-69
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	3e-52
pfam00406	186	pfam00406, ADK, Adenylate kinase	8e-51
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	3e-45
TIGR01351	210	TIGR01351, adk, adenylate kinase	3e-40
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	6e-35
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	9e-32
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	2e-22
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	3e-22
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	5e-22
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	2e-21
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	2e-20
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	3e-20
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	1e-17
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	2e-17
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	4e-17
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-16
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	3e-15
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	8e-15
PLN02674	244	PLN02674, PLN02674, adenylate kinase	5e-13
pfam13207	114	pfam13207, AAA_17, AAA domain	3e-09
pfam13671	143	pfam13671, AAA_33, AAA domain	2e-06
pfam13238	128	pfam13238, AAA_18, AAA domain	8e-06
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	7e-05
COG1102	179	COG1102, Cmk, Cytidylate kinase [Nucleotide transp	1e-04
cd02020	147	cd02020, CMPK, Cytidine monophosphate kinase (CMPK	5e-04
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	6e-04

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score =  233 bits (596), Expect = 3e-79
 Identities = 90/126 (71%), Positives = 106/126 (84%), Gaps = 2/126 (1%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           VVFVLGGPGSGKGTQCA IVE+FG+THLSAGDLLRAEIKSGSENG +I++MIK GKIVPS
Sbjct: 1   VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPS 60

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERR 140
           EVT+KLL+ A++  G+ KFLIDGFPRNEEN  A+E +   K+  +FVLFFDC EE M +R
Sbjct: 61  EVTVKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120

Query: 141 ILNRNQ 146
           +L R Q
Sbjct: 121 LLKRGQ 126

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score =  208 bits (532), Expect = 6e-69
 Identities = 94/130 (72%), Positives = 103/130 (79%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K P + FVLGGPGSGKGTQC  IVE FG+ HLSAGDLLR EI S SE+G MI N IKEGK
Sbjct: 41  KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGK 100

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVT+KL+QK ME S N+KFLIDGFPR EENR AFE +   EP  VLFFDC EEEM 
Sbjct: 101 IVPSEVTVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMV 160

Query: 139 RRILNRNQVR 148
           +R+LNRNQ R
Sbjct: 161 KRVLNRNQGR 170

Length = 234

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  165 bits (419), Expect = 3e-52
 Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
            + +LG PGSGKGTQ   + + +G  H+S GDLLR EI SG+E G   +  I  GK+VP 
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 83  EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMER 139
           E+ IKLL++ +++      F++DGFPR  +   A + +    I+P+ V+  D  +E +  
Sbjct: 61  EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIE 120

Query: 140 RILNR 144
           RIL R
Sbjct: 121 RILGR 125

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  161 bits (409), Expect = 8e-51
 Identities = 51/122 (41%), Positives = 77/122 (63%), Gaps = 3/122 (2%)

Query: 26  VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT 85
           +LG PG+GKGTQ   IV+ +G  HLS GDLLRAE+KSG+E G   +  + +G++VP EV 
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 86  IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           I L+++ +E     + FL+DGFPR      A E + +  I+ ++V+ FD  +E +  R+ 
Sbjct: 61  IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLT 120

Query: 143 NR 144
            R
Sbjct: 121 GR 122

Length = 186

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score =  147 bits (372), Expect = 3e-45
 Identities = 63/131 (48%), Positives = 87/131 (66%), Gaps = 5/131 (3%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            K  ++F++GGPGSGKGTQC  IVE +G+THLS GDLLRAE+ SGSE G  +Q +++ G 
Sbjct: 1   AKCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGD 60

Query: 79  IVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEE 135
           +VP +  + LL+ AM  +      FLIDG+PR  +    FE   +I  P  VL+FDCSE+
Sbjct: 61  LVPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFER--RIGPPTLVLYFDCSED 118

Query: 136 EMERRILNRNQ 146
            M +R+L R +
Sbjct: 119 TMVKRLLKRAE 129

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  135 bits (342), Expect = 3e-40
 Identities = 47/124 (37%), Positives = 77/124 (62%), Gaps = 3/124 (2%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +V  LG PGSGKGTQ   I E +G  H+S GDLLRAEIK+G+  G   +  +++G++VP 
Sbjct: 2   LVL-LGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 83  EVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
           E+  +L+++ + ++    + F++DGFPR      A +A+ K + + V+  D  +EE+  R
Sbjct: 61  EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVER 120

Query: 141 ILNR 144
           +  R
Sbjct: 121 LSGR 124

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  121 bits (306), Expect = 6e-35
 Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E +G  H+S GD+LRA +K+G+E G   ++ +  G++VP E+ I
Sbjct: 6   LGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+++ + +      FL+DGFPR      A + + K   I+ + V+  D  +EE+  R+ 
Sbjct: 66  GLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLS 125

Query: 143 NR 144
            R
Sbjct: 126 GR 127

Length = 215

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  112 bits (282), Expect = 9e-32
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + +LG PG+GK T    + +  G  HL  GD+LRA I   +E G  I+  I +G++VP E
Sbjct: 3   ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDE 62

Query: 84  VTIKLLQKAMEES-GNDKFLIDGFPRN---EENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           +   L+++ ++E+     F++DGFPR                +  + V+  D  EE +  
Sbjct: 63  IVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLE 122

Query: 140 RILNRNQ 146
           R+L R  
Sbjct: 123 RLLGRRV 129

Length = 178

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 6/123 (4%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + EH    H+S GD+LR  IK  +  G   Q  + +G++VP ++ +
Sbjct: 7   LGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVL 66

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAF--EAVTKI--EPEFVLFFDCSEEEMERRI 141
            L+Q+ +++      +++DGFPR    +AAF  E + +I    E V+  D  ++ +  R+
Sbjct: 67  DLVQERLQQPDAANGWILDGFPRK-VTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERL 125

Query: 142 LNR 144
           L R
Sbjct: 126 LAR 128

Length = 184

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score = 92.6 bits (230), Expect = 3e-22
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 9/122 (7%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI- 86
           G P SGKGTQC  IV  FG  H+S GDLLRAE+ +G++ G   +  +  G++VP E+ I 
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 87  ----KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
               +L ++  +E G   +L+DG+PR+     + E + KI P+  +  D  +E +  R +
Sbjct: 64  MVTGRLSREDAKEKG---WLLDGYPRSFAQAQSLEKL-KIRPDIFILLDVPDEILIDRCV 119

Query: 143 NR 144
            R
Sbjct: 120 GR 121

Length = 505

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score = 88.3 bits (219), Expect = 5e-22
 Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 10/126 (7%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-----IKSGSENGTMIQNMIKEGK 78
           + +LG PG+GKGTQ +N+ E FG  H++ GD LRA          +E  T  + M   G+
Sbjct: 6   ILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYM-DAGE 64

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           +VP  V  +++++A+ ++  D F++DG+PRN E     E++T +  + VL+ D SEEE+ 
Sbjct: 65  LVPDAVVNEIVEEALSDA--DGFVLDGYPRNLEQAEYLESITDL--DVVLYLDVSEEELV 120

Query: 139 RRILNR 144
            R+  R
Sbjct: 121 DRLTGR 126

Length = 215

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score = 86.0 bits (213), Expect = 2e-21
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 16  VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 75
           +T  K  VV  LG PG+GKGTQ   + +  G   LS GD+LR  +  G+E G   + +++
Sbjct: 1   MTQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIME 60

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLF 129
            G +VP E+ + L++  +      + + DGFPR     A  EA+ ++  E       V+ 
Sbjct: 61  AGDLVPDELILALIRDELAGMEPVRVIFDGFPRTL---AQAEALDRLLEELGARLLAVVL 117

Query: 130 FDCSEEEMERRILNR 144
            +  +EE+ RRI+ R
Sbjct: 118 LEVPDEELIRRIVER 132

Length = 191

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score = 82.9 bits (205), Expect = 2e-20
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ A +    G  HLS GDLLR+E+ +GS  G   + ++  G++V   + +
Sbjct: 8   LGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVL 67

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILN 143
            +++  ++   +  +L+DGFPR      A E +    K   E V+  +  +  +  R+L 
Sbjct: 68  AIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLA 127

Query: 144 R 144
           R
Sbjct: 128 R 128

Length = 183

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score = 84.5 bits (209), Expect = 3e-20
 Identities = 50/128 (39%), Positives = 67/128 (52%), Gaps = 15/128 (11%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           VF LG PG GKGT  + + +  G  H++ GDL+R EIKS    G  ++ ++ +GK+VP E
Sbjct: 33  VF-LGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDE 91

Query: 84  VTIKLLQK---AMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-------PEFVLFFDCS 133
           +   LL K   A EE G   F++DGFPR        E VT I+        E VL   C 
Sbjct: 92  IIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKC- 150

Query: 134 EEEMERRI 141
              + RRI
Sbjct: 151 ---LGRRI 155

Length = 261

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 8/123 (6%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P +GKGTQ   +VE  G   LS GD+LRA I SGSE G  ++ ++  G++V  E+ I 
Sbjct: 7   GPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIA 66

Query: 88  LLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRI 141
           L+++ + E       + DGFPR      A + +      KI  + V+     +E +  RI
Sbjct: 67  LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKI--DVVIRLKVDDEALIERI 124

Query: 142 LNR 144
           + R
Sbjct: 125 VKR 127

Length = 188

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           +  +G PG+GKGTQ   + E      +S GD+LR  +K+ +  G   +  +  G +VP  
Sbjct: 4   IIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDS 63

Query: 84  VTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMER 139
           V I +++  + E+   + FL+DGFPR  E   A +A+ K      +  +  +  + E+ +
Sbjct: 64  VVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLK 123

Query: 140 RILNR 144
           R+L R
Sbjct: 124 RLLGR 128

Length = 186

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 75.3 bits (185), Expect = 4e-17
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +VF LG PGSGKGT    +     Y H+S GDL R  I + +  G  I+ +++ G++VP 
Sbjct: 3   LVF-LGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPD 61

Query: 83  EVTIKLLQKAMEE-SGNDKFLIDGFPRN 109
            +TIK+++  +     ND F++DGFPRN
Sbjct: 62  SITIKIVEDKINTIKNNDNFILDGFPRN 89

Length = 211

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 75.7 bits (186), Expect = 1e-16
 Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 1/97 (1%)

Query: 26  VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT 85
           +LG PG+GKGTQ   +V+ +G   LS GD+LRA + +G+  G   ++++  G +VP EV 
Sbjct: 5   LLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVV 64

Query: 86  IKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK 121
           + ++   +E+    + F++DGFPR      A +A+ K
Sbjct: 65  VGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLK 101

Length = 333

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 70.5 bits (173), Expect = 3e-15
 Identities = 30/86 (34%), Positives = 52/86 (60%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G  GSGKGTQ A + + +   H+ +G + R  I  G+E G   +  I  G +VP +
Sbjct: 3   ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDD 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRN 109
           +TI ++ + +++ G + +L+DGFPRN
Sbjct: 63  ITIPMILETLKQDGKNGWLLDGFPRN 88

Length = 223

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 69.4 bits (170), Expect = 8e-15
 Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           +K P  + + G PG GKGT    + +     H++ G++LR EIK+ +  G  IQ ++  G
Sbjct: 3   LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSG 62

Query: 78  KIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRN 109
            +VP  + I +++  + +  +D    F++DGFPRN
Sbjct: 63  NLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRN 97

Length = 229

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score = 64.5 bits (157), Expect = 5e-13
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 8/127 (6%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PGSGKGTQ   I + +   HL+ GD+LRA + + +  G   +  + +G++V  +
Sbjct: 34  LILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 93

Query: 84  VTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEM 137
           + + ++ +AM++    K F++DGFPR        + +      KI+   VL F   +  +
Sbjct: 94  LVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDK--VLNFAIDDAIL 151

Query: 138 ERRILNR 144
           E RI  R
Sbjct: 152 EERITGR 158

Length = 244

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 52.3 bits (125), Expect = 3e-09
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++ + G PGSGK T    + E  G   +S  DLLR E  +  ++G +             
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGEL----------DDI 50

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           ++ ++LL++ ++E    +++IDG   +       EA   +     L        + +R L
Sbjct: 51  DIDLELLEEILDELAKQEWVIDGVRESTLELRLEEADLVV--FLDLPLPACRFRLLKRRL 108

Query: 143 NRNQ 146
            R +
Sbjct: 109 QRGR 112

Length = 114

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 10/129 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++ ++G PGSGK T    ++   G   LS+ D LR  ++ G     +       G++   
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGAVVLSS-DTLRKRLR-GDGPPDISYYARASGRVY-- 56

Query: 83  EVTIKLLQKAMEESGNDKFLID-GFPRNEENRAAFEAVTKIE--PEFVLFFDCSEEEMER 139
           +  ++L ++A+  +G    ++D      EE RA    + +    P  +++ +  EE +  
Sbjct: 57  QRLLELAREAL-RAGRP-VIVDATNLSREE-RARLIDLARRYGAPVRIVYLEAPEEVLRE 113

Query: 140 RILNRNQVR 148
           R   R +  
Sbjct: 114 RNAQRERSG 122

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 18/126 (14%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PGSGK T    + E  G        +LR   K       + + +  E K +  +
Sbjct: 1   ILITGTPGSGKTTLAKELAERLGD-------VLRDLAKENGLVLELDEEITDESKRLDED 53

Query: 84  VTIKLLQKAMEESGNDK----FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
              KLL K  +           +IDG     E     + V        +      EE+  
Sbjct: 54  KLAKLLDKLEKIIEELAEGENVIIDGHLAELELERFKDLV-------FVVLRADPEELLE 106

Query: 140 RILNRN 145
           R+  R 
Sbjct: 107 RLKKRG 112

Length = 128

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 40.9 bits (97), Expect = 7e-05
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 28 GGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          G PGSGK T    + E  G  H+SAG++ R
Sbjct: 7  GPPGSGKTTVARLLAEKLGLKHVSAGEIFR 36

Length = 180

>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          V+ + G PGSGK T    + EH G   +SAG + R
Sbjct: 2  VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFR 36

Length = 179

>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 39/129 (30%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTM--IQNMIKEGKIVPSEV 84
           G  GSGK T    + +  G  +L  G +   E+ K  SE   +  ++  + E        
Sbjct: 6   GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDE-------- 57

Query: 85  TIKLLQKAMEESGNDKFLIDG-------FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
                Q+ + +      +++G       FP         +A  KI      F   S E  
Sbjct: 58  ----RQRELAKKPG--IVLEGRDIGTVVFP---------DADLKI------FLTASPEVR 96

Query: 138 ERRILNRNQ 146
            +R   + Q
Sbjct: 97  AKRRAKQLQ 105

Length = 147

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          ++ + G PGSGK T    + E      +SAGD+ R
Sbjct: 2  IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFR 36

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.94
PLN02200	234	adenylate kinase family protein	99.93
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.91
PRK14531	183	adenylate kinase; Provisional	99.91
PRK14532	188	adenylate kinase; Provisional	99.91
PLN02674	244	adenylate kinase	99.9
PRK14527	191	adenylate kinase; Provisional	99.9
PLN02459	261	probable adenylate kinase	99.89
PRK14529	223	adenylate kinase; Provisional	99.89
PRK14528	186	adenylate kinase; Provisional	99.89
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.89
PRK13808	333	adenylate kinase; Provisional	99.89
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.88
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.88
PTZ00088	229	adenylate kinase 1; Provisional	99.87
PRK02496	184	adk adenylate kinase; Provisional	99.87
PRK00279	215	adk adenylate kinase; Reviewed	99.86
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.85
PRK14526	211	adenylate kinase; Provisional	99.84
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.84
PRK14530	215	adenylate kinase; Provisional	99.83
PLN02842	505	nucleotide kinase	99.77
PRK01184	184	hypothetical protein; Provisional	99.72
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.68
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.64
PRK08356	195	hypothetical protein; Provisional	99.61
PRK08118	167	topology modulation protein; Reviewed	99.59
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.58
PRK06217	183	hypothetical protein; Validated	99.57
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.57
PRK06762	166	hypothetical protein; Provisional	99.55
PRK13949	169	shikimate kinase; Provisional	99.53
PRK03839	180	putative kinase; Provisional	99.52
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.5
PRK04040	188	adenylate kinase; Provisional	99.5
PRK00625	173	shikimate kinase; Provisional	99.49
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.48
PRK13973	213	thymidylate kinase; Provisional	99.46
PRK07261	171	topology modulation protein; Provisional	99.45
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.44
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.44
PRK06547	172	hypothetical protein; Provisional	99.44
PRK08233	182	hypothetical protein; Provisional	99.44
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.43
PHA02530	300	pseT polynucleotide kinase; Provisional	99.42
PRK13948	182	shikimate kinase; Provisional	99.41
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.4
PRK13946	184	shikimate kinase; Provisional	99.39
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.39
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.38
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.37
PRK04182	180	cytidylate kinase; Provisional	99.37
PRK09825	176	idnK D-gluconate kinase; Provisional	99.37
PRK00131	175	aroK shikimate kinase; Reviewed	99.36
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.36
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.36
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.36
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.35
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.35
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.35
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.35
PRK03731	171	aroL shikimate kinase II; Reviewed	99.35
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.35
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.34
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.33
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.32
PRK13947	171	shikimate kinase; Provisional	99.31
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.31
PRK13975	196	thymidylate kinase; Provisional	99.3
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.3
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.3
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.3
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.29
PRK05057	172	aroK shikimate kinase I; Reviewed	99.29
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.28
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.28
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.27
PRK13974	212	thymidylate kinase; Provisional	99.26
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.26
PLN02422	232	dephospho-CoA kinase	99.26
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.25
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.25
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.25
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.25
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.24
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	99.24
COG0645	170	Predicted kinase [General function prediction only	99.24
PRK11545	163	gntK gluconate kinase 1; Provisional	99.24
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.23
PRK05541	176	adenylylsulfate kinase; Provisional	99.23
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.23
PLN02199	303	shikimate kinase	99.23
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.23
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.22
PRK12338	319	hypothetical protein; Provisional	99.22
PRK05480	209	uridine/cytidine kinase; Provisional	99.22
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.21
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.21
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.21
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.2
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.2
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.2
PLN02924	220	thymidylate kinase	99.2
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.2
PTZ00451	244	dephospho-CoA kinase; Provisional	99.19
PRK00698	205	tmk thymidylate kinase; Validated	99.19
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.19
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.18
PRK00023	225	cmk cytidylate kinase; Provisional	99.17
PRK06696	223	uridine kinase; Validated	99.16
PRK07667	193	uridine kinase; Provisional	99.16
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.16
PTZ00301	210	uridine kinase; Provisional	99.15
PRK03846	198	adenylylsulfate kinase; Provisional	99.15
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.14
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.14
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.13
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.13
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.13
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.13
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.12
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.1
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.09
PLN02348	395	phosphoribulokinase	99.07
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.06
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.06
PRK00889	175	adenylylsulfate kinase; Provisional	99.04
PRK15453	290	phosphoribulokinase; Provisional	99.04
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	99.03
PRK07429	327	phosphoribulokinase; Provisional	99.02
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.01
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.0
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.0
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.99
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.99
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.98
PRK13976	209	thymidylate kinase; Provisional	98.98
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.98
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.97
PRK07933	213	thymidylate kinase; Validated	98.97
PRK05439	311	pantothenate kinase; Provisional	98.97
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.97
PHA03132	580	thymidine kinase; Provisional	98.96
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.95
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.95
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.94
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.94
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.94
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	98.93
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	98.92
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.92
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.92
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.91
COG1123	539	ATPase components of various ABC-type transport sy	98.91
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.91
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.91
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.91
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.9
PRK00300	205	gmk guanylate kinase; Provisional	98.89
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.89
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.87
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.87
COG4639	168	Predicted kinase [General function prediction only	98.87
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.86
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.86
PRK14738	206	gmk guanylate kinase; Provisional	98.86
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.86
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.85
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.84
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.83
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.83
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.82
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.82
PHA00729	226	NTP-binding motif containing protein	98.81
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.81
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.81
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.81
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.81
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.81
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.8
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.8
PRK14737	186	gmk guanylate kinase; Provisional	98.8
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.79
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.78
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.78
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.77
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.77
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.77
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.77
COG4987	573	CydC ABC-type transport system involved in cytochr	98.76
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.76
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.76
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.76
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.76
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.76
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.76
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.76
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.75
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.75
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.75
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.75
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.74
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.74
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.74
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.74
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.74
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.74
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.74
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.74
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.74
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.74
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.74
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.74
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.73
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.73
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.73
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.73
cd03246	173	ABCC_Protease_Secretion This family represents the	98.73
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.73
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.72
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.72
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.72
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.72
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.72
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.72
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.72
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.72
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.72
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.72
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.72
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.71
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.71
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.71
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.71
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.71
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.71
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.71
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.71
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.7
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.7
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.7
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.7
COG4988	559	CydD ABC-type transport system involved in cytochr	98.7
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.7
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.7
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.7
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.69
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.69
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.69
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.69
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.69
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.69
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.69
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.69
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.69
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.69
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.69
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.68
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.68
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.68
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.68
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.68
PLN02165	334	adenylate isopentenyltransferase	98.68
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.68
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.67
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.67
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.67
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.67
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.67
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.67
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.67
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.67
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.67
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.67
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.66
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.66
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.66
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.66
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.66
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.66
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.66
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.66
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.65
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.65
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.65
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.65
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.65
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.65
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.65
PRK10908	222	cell division protein FtsE; Provisional	98.65
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.65
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.65
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.65
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.65
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.64
COG1660	286	Predicted P-loop-containing kinase [General functi	98.64
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.64
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.64
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
COG1123	539	ATPase components of various ABC-type transport sy	98.64
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.64
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.64
PLN02318	656	phosphoribulokinase/uridine kinase	98.63
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.63
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.63
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.63
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.63
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.63
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.63
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.62
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.62
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.62
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.62
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.62
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.62
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.62
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.62
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.62
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.62
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.62
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.61
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.61
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.61
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.61
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.61
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.61
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.6
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.6
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.6
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.6
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.6
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.6
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.6
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.6
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
COG4172	534	ABC-type uncharacterized transport system, duplica	98.6
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.59
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.59
PF05729	166	NACHT: NACHT domain	98.59
COG4181	228	Predicted ABC-type transport system involved in ly	98.58
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.58
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.58
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.58
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.58
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.58
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.58
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.57
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.57
PRK10938	490	putative molybdenum transport ATP-binding protein	98.57
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.57
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.57
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.56
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.56
PLN03232	1495	ABC transporter C family member; Provisional	98.56
PLN03130	1622	ABC transporter C family member; Provisional	98.55
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.55
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.55
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.55
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.54
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.54
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.54
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.54
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.53
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.53
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.53
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.53
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.53
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.53
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.53
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.53
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.53
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.52
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.52
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.52
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.52
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.52
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.51
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.51
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.51
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.51
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.51
KOG0062	582	consensus ATPase component of ABC transporters wit	98.5
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.5
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.5
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.5
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.5
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.5
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.5
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.49
PRK13409	590	putative ATPase RIL; Provisional	98.49
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.49
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.49
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.49
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.49
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.49
PRK13409	590	putative ATPase RIL; Provisional	98.49
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.49
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.48
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.48
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.48
PHA03136	378	thymidine kinase; Provisional	98.48
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.48
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.48
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.48
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.48
PTZ00243	1560	ABC transporter; Provisional	98.48
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.48
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.48
PLN03073	718	ABC transporter F family; Provisional	98.48
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.47
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.47
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.47
COG0488	530	Uup ATPase components of ABC transporters with dup	98.47
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.46
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.46
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.46
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.46
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.46
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.45
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.45
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.45
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.45
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.44
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.44
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.43
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.43
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.43
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.43
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.43
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.43
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.43
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.42
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.42
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.42
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.41
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.41
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.41
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.41
PRK11147	635	ABC transporter ATPase component; Reviewed	98.4
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.4
COG0488	530	Uup ATPase components of ABC transporters with dup	98.4
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.4
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.39
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.39
PRK11147	635	ABC transporter ATPase component; Reviewed	98.39
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.38
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.38
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.38
PLN03232	1495	ABC transporter C family member; Provisional	98.38
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.38
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.37
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.36
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.36
COG3709	192	Uncharacterized component of phosphonate metabolis	98.36
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.36
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.36
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.36
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.35
PLN03130	1622	ABC transporter C family member; Provisional	98.35
COG4559	259	ABC-type hemin transport system, ATPase component	98.35
PLN02796	347	D-glycerate 3-kinase	98.35
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.35
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.35
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.34
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.34
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.34
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	98.34
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	98.34
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.33
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	98.33
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.33
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.33
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.33
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.32
COG4178	604	ABC-type uncharacterized transport system, permeas	98.32
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.32
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.32
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.32
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.31
PLN03211	659	ABC transporter G-25; Provisional	98.31
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.31
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.31
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.3
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.3
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.3
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.29
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.29
PRK06761	282	hypothetical protein; Provisional	98.29

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.94  E-value=1.1e-24  Score=158.42  Aligned_cols=135  Identities=58%  Similarity=1.040  Sum_probs=124.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   96 (182)
                      ...+++|++.|+|||||-|.|..++++|||.+++.||++++.... +.+.|..+++.+.+|...|.+...++|++.+.+.
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~   84 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS   84 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence            456789999999999999999999999999999999999999998 8999999999999999999999999999999885


Q ss_pred             CC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhcc--CCCCC
Q 030176           97 GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQV--RQKLP  152 (182)
Q Consensus        97 ~~-~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~--r~~~~  152 (182)
                      .. .+++|||||+...|...|.+.+...+++++|+||+.+++.+|+..|++.  |.+|+
T Consensus        85 ~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn  143 (195)
T KOG3079|consen   85 GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDN  143 (195)
T ss_pred             CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCc
Confidence            43 4599999999999999999999878999999999999999999999976  55554

>PLN02200 adenylate kinase family protein

Probab=99.93  E-value=6.4e-24  Score=164.03  Aligned_cols=138  Identities=68%  Similarity=1.062  Sum_probs=121.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   93 (182)
                      ..+....+.+|+|+|+|||||||+|+.|++++|+.+++.++++++......+.+..+.+.+..|...+++....++.+.+
T Consensus        36 ~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l  115 (234)
T PLN02200         36 SSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEM  115 (234)
T ss_pred             CCccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence            33445667899999999999999999999999999999999999999888888888888888999999998888888877


Q ss_pred             HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKL  151 (182)
Q Consensus        94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~  151 (182)
                      ......++|+||||+...|+..+....+..||++|+|++|++++.+|+.+|+..|.++
T Consensus       116 ~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd  173 (234)
T PLN02200        116 ESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDD  173 (234)
T ss_pred             hcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCC
Confidence            6655678999999999999998887777679999999999999999999997666554

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.91  E-value=8.8e-23  Score=152.02  Aligned_cols=124  Identities=72%  Similarity=1.170  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  102 (182)
                      +|+|+|+|||||||+|+.|++++|+.+++.+|++++....+...+...++++.++...|++...+++.+.+......++|
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            48999999999999999999999999999999999998877788888888899999999999999998887765467899


Q ss_pred             EeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHhhhc
Q 030176          103 IDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus       103 ldg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      +||||+...|+..+...+.  ..|+++|+|++|.+.+.+|+.+|..
T Consensus        81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~  126 (183)
T TIGR01359        81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ  126 (183)
T ss_pred             EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence            9999999999888766542  4689999999999999999999864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14531 adenylate kinase; Provisional

Probab=99.91  E-value=9.5e-23  Score=152.20  Aligned_cols=130  Identities=31%  Similarity=0.558  Sum_probs=113.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      ..|+|+|+|||||||+++.|++.+|+.+++.++++++........+...+.++..|...+++.+..++.+.+......++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~   82 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW   82 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence            46999999999999999999999999999999999999988888888888889999999999999988877766456789


Q ss_pred             EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176          102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF  153 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~  153 (182)
                      |+||||+...|...+...+   +..++.+|+|++|.+++.+|+..|  +|.+|..
T Consensus        83 ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~  135 (183)
T PRK14531         83 LLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNE  135 (183)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCH
Confidence            9999999999988876643   446788999999999999999998  6655543

>PRK14532 adenylate kinase; Provisional

Probab=99.91  E-value=2e-22  Score=150.83  Aligned_cols=123  Identities=33%  Similarity=0.598  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~  101 (182)
                      .|+|.|+|||||||+|+.|++.+|+.+++.|+++++....+...+..+++.+..|..++++.+.+++.+.+... .+.++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~   81 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA   81 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence            48899999999999999999999999999999999998888888888899888999999999999988887653 35789


Q ss_pred             EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||||+...|+..+...+   +..||++|+|++|.+++.+|+.+|.
T Consensus        82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~  128 (188)
T PRK14532         82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF  128 (188)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence            9999999999998876543   4568999999999999999999885

>PLN02674 adenylate kinase

Probab=99.90  E-value=1.5e-22  Score=156.42  Aligned_cols=127  Identities=28%  Similarity=0.549  Sum_probs=116.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-   97 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-   97 (182)
                      +..+.|+|.|+|||||+|+|+.|+++||+.+++.|+++++.+..+...|..+++++..|...|++.+..++.+.+...+ 
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence            3456789999999999999999999999999999999999999999999999999999999999999999999987743 


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..++|+||||+...|...+...+   +..++.+|+|++|.+.+.+|+..|.
T Consensus       109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~  159 (244)
T PLN02674        109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW  159 (244)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence            57899999999999999887664   4579999999999999999999884

>PRK14527 adenylate kinase; Provisional

Probab=99.90  E-value=4.8e-22  Score=149.31  Aligned_cols=143  Identities=29%  Similarity=0.507  Sum_probs=119.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   97 (182)
                      ..++.+|+|+|+|||||||+++.|++++|+.+++.+++++.........+...+.++..+...|++.+..++.+.+.+..
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~   82 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME   82 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence            35678999999999999999999999999999999999999988878888888888888999999999999998887655


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhc--cCCCCCcchHHHHHHH
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQ--VRQKLPFSWGVFCLFI  162 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~--~r~~~~~~~~~~~~~~  162 (182)
                      +.++|+||||+...|+..+...+   +..++.+|+|++|.+++.+|+.+|..  +|.+|  +.+.+...+
T Consensus        83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd--~~~~~~~R~  150 (191)
T PRK14527         83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDD--NEETVRRRQ  150 (191)
T ss_pred             CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCC--CHHHHHHHH
Confidence            56799999999999987776543   45688899999999999999999974  34443  344444433

>PLN02459 probable adenylate kinase

Probab=99.89  E-value=4.3e-22  Score=154.66  Aligned_cols=129  Identities=33%  Similarity=0.632  Sum_probs=115.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   94 (182)
                      ++....++.|+|.|||||||||+|+.|++.+|+.+++.++++++........+..++.++..|..+|++.+..++.+.+.
T Consensus        23 ~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~  102 (261)
T PLN02459         23 SLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLE  102 (261)
T ss_pred             CccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence            33334556788999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hc---CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           95 ES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        95 ~~---~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +.   ...++|+||||+...|...|....  .++.+|+|++|.+.+.+|+..|.
T Consensus       103 ~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~--~id~Vi~L~v~d~~l~~Rl~gR~  154 (261)
T PLN02459        103 AGEEEGESGFILDGFPRTVRQAEILEGVT--DIDLVVNLKLREEVLVEKCLGRR  154 (261)
T ss_pred             cccccCCceEEEeCCCCCHHHHHHHHhcC--CCCEEEEEECCHHHHHHHhhccc
Confidence            52   357899999999999999997653  57899999999999999999774

>PRK14529 adenylate kinase; Provisional

Probab=99.89  E-value=2.6e-22  Score=153.40  Aligned_cols=123  Identities=28%  Similarity=0.594  Sum_probs=113.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  102 (182)
                      .|+|.|+|||||||+++.|++.|++.+++.++++++....+...+..+++++..+..+|++.+.+++.+.+.+.+..++|
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i   81 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL   81 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence            48899999999999999999999999999999999998888899999999999999999999999999999876578999


Q ss_pred             EeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          103 IDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       103 ldg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +||||+...|...+...+   +..|+.+|+|++|.+++.+|+..|.
T Consensus        82 LDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~  127 (223)
T PRK14529         82 LDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR  127 (223)
T ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence            999999999999886653   4579999999999999999999984

>PRK14528 adenylate kinase; Provisional

Probab=99.89  E-value=1.8e-21  Score=145.64  Aligned_cols=144  Identities=25%  Similarity=0.469  Sum_probs=120.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~  100 (182)
                      +.|+|+|+|||||||+++.|++.+|+.+++.+++++.....+...+.....++..+...+++.+..++.+.+.+. ...+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            458999999999999999999999999999999999999888888888889999999999998888888887663 3568


Q ss_pred             EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176          101 FLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS  165 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (182)
                      +|+||||+...|...+...+   +..+|.+|+|++|.+.+.+|+..|.......+.+.+.+...++.+
T Consensus        82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y  149 (186)
T PRK14528         82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNY  149 (186)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHH
Confidence            99999999999998887654   346999999999999999999998642222233466666666444

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.89  E-value=1.3e-21  Score=141.61  Aligned_cols=118  Identities=45%  Similarity=0.849  Sum_probs=104.7

Q ss_pred             EEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcEEEe
Q 030176           26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLID  104 (182)
Q Consensus        26 I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ild  104 (182)
                      |.|||||||||+|+.|++++|+.+++.++++++........+..+++.+.+|..+|++.+.+++...+.+. ...++|+|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            68999999999999999999999999999999999999999999999999999999999999999998875 67899999


Q ss_pred             CCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHh
Q 030176          105 GFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus       105 g~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      |||+...|...+...+   ...|+.+|+|++|.+.+.+|+.+
T Consensus        81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            9999999999988733   45689999999999999999986

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK13808 adenylate kinase; Provisional

Probab=99.89  E-value=1.9e-21  Score=155.87  Aligned_cols=122  Identities=31%  Similarity=0.652  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~  101 (182)
                      .|+|+|||||||||+++.|++.||+.+++.||++++.+......+..+++++..|...|++.+..++.+.+.+. ...+|
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~   81 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF   81 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence            48899999999999999999999999999999999999988889999999999999999999999998888763 35789


Q ss_pred             EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176          102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      ||||||+...|...|...+   +..||++|+||+|.+++++|+..|
T Consensus        82 ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R  127 (333)
T PRK13808         82 ILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR  127 (333)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence            9999999999998886654   457999999999999999999987

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.88  E-value=1.3e-20  Score=140.66  Aligned_cols=144  Identities=42%  Similarity=0.772  Sum_probs=113.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SGN   98 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~   98 (182)
                      -++|+|+|+|||||||+|+.|++.+|+.+++.|++++.........+..++..+..+...+.+.+...+.+.+..  ..+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS   82 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence            468999999999999999999999999999999999998766666777777777778888888877777776654  345


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS  165 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (182)
                      .++|+||+|+...|...+.... ..|+++|+|++|.+.+.+|+.+|.........+.+.+...++.+
T Consensus        83 ~~~i~dg~~~~~~q~~~~~~~~-~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~  148 (188)
T TIGR01360        83 KGFLIDGYPREVKQGEEFERRI-GPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETY  148 (188)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcC-CCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHH
Confidence            7899999999998888886655 35899999999999999999988632222333445555555443

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR01351 adk adenylate kinases

Probab=99.88  E-value=4.6e-21  Score=146.01  Aligned_cols=122  Identities=38%  Similarity=0.717  Sum_probs=110.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCCcE
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKF  101 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~  101 (182)
                      |+|+|+|||||||+|+.|++.+|+.+++.++++++........+..+++.+..+...+++.+.+++.+.+.+.  ...++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            7899999999999999999999999999999999998888888888999999999999999999999988762  25789


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||||+...|...+.......++++|+|++|.+.+.+|+..|.
T Consensus        82 ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~  125 (210)
T TIGR01351        82 ILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR  125 (210)
T ss_pred             EEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence            99999999999999887764358899999999999999999884

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.87  E-value=7.6e-21  Score=146.24  Aligned_cols=124  Identities=25%  Similarity=0.528  Sum_probs=111.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c-
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S-   96 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~-   96 (182)
                      .++.|+|+|+|||||||+|+.|++.+|+.+++.|+++++........+..+++++..+...|++.+.+++.+.+.+  . 
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence            3466999999999999999999999999999999999999988888999999999999999999999999988876  2 


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ...++|+||||+...|+..+...  ..++.+|+|++|.+.+++|+..|.
T Consensus        85 ~~~g~iLDGfPRt~~Qa~~l~~~--~~~~~vi~l~~~~~~~~~Rl~~Rr  131 (229)
T PTZ00088         85 CFKGFILDGFPRNLKQCKELGKI--TNIDLFVNIYLPRNILIKKLLGRR  131 (229)
T ss_pred             cCceEEEecCCCCHHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHcCc
Confidence            35789999999999999888654  368999999999999999999774

>PRK02496 adk adenylate kinase; Provisional

Probab=99.87  E-value=2.9e-20  Score=138.75  Aligned_cols=128  Identities=31%  Similarity=0.585  Sum_probs=110.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~  100 (182)
                      +.++|+|+|||||||+++.|++.+|+.+++.++++++........+...+.++..+...+++....++.+.+.+. ...+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g   81 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG   81 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence            458999999999999999999999999999999999998888888888888888999999999999998888653 3468


Q ss_pred             EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQVRQKL  151 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~  151 (182)
                      +|+||||+...|...+...   .+..|+.+|+|++|.+.+.+|+..|  ++.++
T Consensus        82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd  133 (184)
T PRK02496         82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDD  133 (184)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCC
Confidence            9999999999887766554   3457899999999999999999988  45443

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.86  E-value=2.5e-20  Score=142.43  Aligned_cols=123  Identities=36%  Similarity=0.692  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~  101 (182)
                      .|+|+|+|||||||+++.|++.+|+.+++.++++++........+..+.+.+..+...+++.+.+++.+.+.+.. ..++
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~   81 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF   81 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence            589999999999999999999999999999999999988888888889999999999999999999998887643 3489


Q ss_pred             EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||||+...|...+...+   +..++.+|+|++|.+.+++|+..|.
T Consensus        82 VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~  128 (215)
T PRK00279         82 LLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR  128 (215)
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence            9999999999988886543   4568899999999999999999885

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.85  E-value=1.5e-19  Score=135.64  Aligned_cols=123  Identities=41%  Similarity=0.768  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~  101 (182)
                      .|+|+|+|||||||+|+.|++.+|+.+++.++++++........+..+.+.+..+...+++.+..++...+... ...++
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~   80 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF   80 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence            38999999999999999999999999999999999998877778888888888888889998888888887653 35689


Q ss_pred             EEeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||||+...|+..+.....  ..++++|+|++|.+.+.+|+.+|.
T Consensus        81 vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~  126 (194)
T cd01428          81 ILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR  126 (194)
T ss_pred             EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            99999999999998877664  258899999999999999999986

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14526 adenylate kinase; Provisional

Probab=99.84  E-value=8.2e-20  Score=139.02  Aligned_cols=121  Identities=33%  Similarity=0.620  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~  101 (182)
                      .|+|+|+|||||||+++.|++.+++.+++.|+++++........+..+++++..+...|++.+.+++.+.+... ...++
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~   81 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF   81 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence            47899999999999999999999999999999999999888888999999999999999999999999988763 35789


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||||+...|...+.....  ...+|+|++|.+++.+|+..|.
T Consensus        82 ilDGfPR~~~Qa~~l~~~~~--~~~vi~l~~~~~~~~~Rl~~R~  123 (211)
T PRK14526         82 ILDGFPRNINQAKALDKFLP--NIKIINFLIDEELLIKRLSGRR  123 (211)
T ss_pred             EEECCCCCHHHHHHHHHhcC--CCEEEEEECCHHHHHHHHHCCC
Confidence            99999999999999977543  2367789999999999999885

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.84  E-value=3.3e-19  Score=132.20  Aligned_cols=128  Identities=32%  Similarity=0.608  Sum_probs=114.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC-CcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN-DKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~  101 (182)
                      .|+|.|+|||||||+|+.|++.+++++++.+++++.........+...+.++..+..++++.....+.+.+...+. .++
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~   81 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGF   81 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeE
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999887542 279


Q ss_pred             EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176          102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQVRQKL  151 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~  151 (182)
                      |+|+||+...|...+.+.+   +...+.++.++++.+.+.+|+..|.. |.+|
T Consensus        82 I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~-r~dd  133 (178)
T COG0563          82 ILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV-REDD  133 (178)
T ss_pred             EEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc-cccC
Confidence            9999999999999888764   45789999999999999999998843 4443

>PRK14530 adenylate kinase; Provisional

Probab=99.83  E-value=1.9e-19  Score=137.55  Aligned_cols=120  Identities=38%  Similarity=0.720  Sum_probs=99.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----cCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   95 (182)
                      ++.|+|+|+|||||||+++.|++.+|+.+++.++++++...     .....+. ..+.+..|...+++....++.+.+..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~   81 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD   81 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999998872     3333443 45567778889998888888877654


Q ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                        ..++|+||||....|+..+....  .++++|+|++|.+.+.+|+..|.
T Consensus        82 --~~~~IldG~pr~~~q~~~l~~~~--~~d~vI~Ld~~~~~l~~Rl~~R~  127 (215)
T PRK14530         82 --ADGFVLDGYPRNLEQAEYLESIT--DLDVVLYLDVSEEELVDRLTGRR  127 (215)
T ss_pred             --CCCEEEcCCCCCHHHHHHHHHhc--CCCEEEEEeCCHHHHHHHHhCCC
Confidence              45799999999999988776543  48899999999999999999874

>PLN02842 nucleotide kinase

Probab=99.77  E-value=1e-17  Score=140.43  Aligned_cols=119  Identities=35%  Similarity=0.733  Sum_probs=107.1

Q ss_pred             EEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCCcEEE
Q 030176           26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLI  103 (182)
Q Consensus        26 I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~il  103 (182)
                      |.|+|||||||+|+.|++.|++.+++.+++++.....+...+..+++++..+...|++.+..++.+.+...  ...++|+
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL   81 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL   81 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence            79999999999999999999999999999999999888999999999999999999999999998887653  2467999


Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          104 DGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       104 dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ||||+...|...+.. ....||++|+||+|.+.+.+|+..|.
T Consensus        82 DGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~  122 (505)
T PLN02842         82 DGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRR  122 (505)
T ss_pred             eCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccc
Confidence            999999999887765 34579999999999999999998874

>PRK01184 hypothetical protein; Provisional

Probab=99.72  E-value=8.9e-16  Score=114.46  Aligned_cols=133  Identities=26%  Similarity=0.370  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CC-----hhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GS-----ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   95 (182)
                      .+|+|+|+|||||||+++ +++++|+.+++.+|++++.... ..     ..+........   .+.......++...+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK---ELGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH---HHChHHHHHHHHHHHHh
Confidence            479999999999999987 7899999999999999988642 11     12333332222   12223333444444444


Q ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI  162 (182)
Q Consensus        96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~  162 (182)
                      ..+..+|+|++ +...+...+.+.+. .+..+|++++|.+.+.+|+.+|  .+.++..+.+++....
T Consensus        78 ~~~~~vvidg~-r~~~e~~~~~~~~~-~~~~~i~v~~~~~~~~~Rl~~R--~~~~d~~~~~~~~~r~  140 (184)
T PRK01184         78 KGDEVVVIDGV-RGDAEVEYFRKEFP-EDFILIAIHAPPEVRFERLKKR--GRSDDPKSWEELEERD  140 (184)
T ss_pred             cCCCcEEEeCC-CCHHHHHHHHHhCC-cccEEEEEECCHHHHHHHHHHc--CCCCChhhHHHHHHHH
Confidence            45678999998 67777777766654 3568999999999999999988  4544445566666554

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.68  E-value=7.1e-16  Score=117.42  Aligned_cols=125  Identities=39%  Similarity=0.679  Sum_probs=112.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN   98 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~   98 (182)
                      ++..+++.|+||+||.|.+..+++.|+..++.++|++++.+...+..+...+.++..+...+++.+..++.+.+... ..
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999777777664 56


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .++++||||+...|.+.+.+. +..+|.+|.|.+|++.+.+|+..|.
T Consensus        94 ~~~ildg~Prt~~qa~~l~~~-~~~~d~Vi~l~vp~~~L~~ri~~r~  139 (235)
T KOG3078|consen   94 KGFILDGFPRTVQQAEELLDR-IAQIDLVINLKVPEEVLVDRITGRR  139 (235)
T ss_pred             cccccCCCCcchHHHHHHHHc-cCCcceEEEecCCHHHHHHHHhccc
Confidence            789999999999988875443 3468999999999999999999774

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.64  E-value=7.8e-15  Score=105.15  Aligned_cols=110  Identities=20%  Similarity=0.331  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC--HHHHHHHHHHHHHhcCCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--SEVTIKLLQKAMEESGND   99 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~   99 (182)
                      ++|.|.|+|||||||+++.||+.+|+.+++.|+++++.....   |+.+.++..-.+..|  +..+.....+...   ..
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~---gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~---~~   74 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARER---GMSLEEFSRYAEEDPEIDKEIDRRQKELAK---EG   74 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHc---CCCHHHHHHHHhcCchhhHHHHHHHHHHHH---cC
Confidence            478999999999999999999999999999999999887642   333334322222222  2222233333332   34


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       100 ~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+|++|.-.     -++.+   ..+|+.|||.+|.+++.+|+..|.
T Consensus        75 nvVlegrLA-----~Wi~k---~~adlkI~L~Apl~vRa~Ria~RE  112 (179)
T COG1102          75 NVVLEGRLA-----GWIVR---EYADLKIWLKAPLEVRAERIAKRE  112 (179)
T ss_pred             CeEEhhhhH-----HHHhc---cccceEEEEeCcHHHHHHHHHHhc
Confidence            677887411     12322   357899999999999999999884

>PRK08356 hypothetical protein; Provisional

Probab=99.61  E-value=8.1e-15  Score=110.44  Aligned_cols=133  Identities=22%  Similarity=0.258  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC-------hhhHH----HHHHHHcCCCCC----HHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-------ENGTM----IQNMIKEGKIVP----SEVTI   86 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~-------~~~~~----~~~~~~~~~~~~----~~~~~   86 (182)
                      ++|+|+|||||||||+|+.|+ ++|+.+++.++.+++......       ..+..    ..+++..+...+    .+.+.
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~   84 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI   84 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence            679999999999999999995 589999999886543222110       00000    012222222222    23334


Q ss_pred             HHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI  162 (182)
Q Consensus        87 ~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~  162 (182)
                      +++.+.+..  ...+++||+ +...|+..+...    ...+|++++|.+.+.+|+.+|+..++....+.+++..+.
T Consensus        85 ~~~~~~~~~--~~~ividG~-r~~~q~~~l~~~----~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~  153 (195)
T PRK08356         85 RLAVDKKRN--CKNIAIDGV-RSRGEVEAIKRM----GGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFD  153 (195)
T ss_pred             HHHHHHhcc--CCeEEEcCc-CCHHHHHHHHhc----CCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence            444444422  236899999 999898887652    247899999999999999998644433334566665553

>PRK08118 topology modulation protein; Reviewed

Probab=99.59  E-value=1.3e-14  Score=106.76  Aligned_cols=98  Identities=22%  Similarity=0.330  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      +.|+|+|+|||||||+|+.|++.+++++++.|++++...                ....+++...+++.+.+.+   ..+
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~~---~~w   62 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVKE---DEW   62 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhcC---CCE
Confidence            469999999999999999999999999999988875321                0123444445555554433   479


Q ss_pred             EEeCCCCC-HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||.+.. ...+  +     ..+|.+||||+|.+.+..|+.+|.
T Consensus        63 VidG~~~~~~~~~--l-----~~~d~vi~Ld~p~~~~~~R~~~R~  100 (167)
T PRK08118         63 IIDGNYGGTMDIR--L-----NAADTIIFLDIPRTICLYRAFKRR  100 (167)
T ss_pred             EEeCCcchHHHHH--H-----HhCCEEEEEeCCHHHHHHHHHHHH
Confidence            99995443 3221  1     137999999999999999999985

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.58  E-value=3.1e-14  Score=101.58  Aligned_cols=129  Identities=20%  Similarity=0.341  Sum_probs=81.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH-------HHHHHHHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-------EVTIKLLQKAMEE   95 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~   95 (182)
                      +|+++|+|||||||+++.|++.++..+++.|++...........           .....       +.+.+.+...+. 
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~-   68 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPS-----------PSDYIEAEERAYQILNAAIRKALR-   68 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGC-----------CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHccccccc-----------chhHHHHHHHHHHHHHHHHHHHHH-
Confidence            58999999999999999999999999999988766554321110           00111       112233333332 


Q ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHhhhccCC-CCCcchHHHHHHHHH
Q 030176           96 SGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQVRQ-KLPFSWGVFCLFIML  164 (182)
Q Consensus        96 ~~~~~~ildg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~R~~~r~-~~~~~~~~~~~~~~~  164 (182)
                       .+..+|+|.......++..+.+...  .-+..+|+|++|.+++.+|+.+|..... ......+.|..++..
T Consensus        69 -~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~  139 (143)
T PF13671_consen   69 -NGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLAR  139 (143)
T ss_dssp             -TT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHH
T ss_pred             -cCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHh
Confidence             3556788876566666666655542  1134688899999999999999975432 223667777777643

...

>PRK06217 hypothetical protein; Validated

Probab=99.57  E-value=2.7e-14  Score=106.52  Aligned_cols=104  Identities=19%  Similarity=0.287  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      +.|+|+|++||||||+++.|++.+|+.+++.|++++.....  ..          ....+.+.....+.+.+..  ...+
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~--~~~~   67 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDP--PF----------TTKRPPEERLRLLLEDLRP--REGW   67 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCC--Cc----------cccCCHHHHHHHHHHHHhc--CCCE
Confidence            46999999999999999999999999999999887643210  00          1112333444444444432  3578


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||++....  ..+    ...+|.+|||++|.+++.+|+.+|.
T Consensus        68 vi~G~~~~~~--~~~----~~~~d~~i~Ld~~~~~~~~Rl~~R~  105 (183)
T PRK06217         68 VLSGSALGWG--DPL----EPLFDLVVFLTIPPELRLERLRLRE  105 (183)
T ss_pred             EEEccHHHHH--HHH----HhhCCEEEEEECCHHHHHHHHHcCc
Confidence            9999765321  111    1247889999999999999999986

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.57  E-value=3.4e-14  Score=100.56  Aligned_cols=108  Identities=18%  Similarity=0.246  Sum_probs=80.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (182)
                      ..+.|+|+|.||+||||+|..||+.+|+.++..++++++..-.. .+..      + .-..++++.+.+.|...+.+   
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~------y-~c~i~DEdkv~D~Le~~m~~---   75 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEE------Y-KCHILDEDKVLDELEPLMIE---   75 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhccccc------c-cCccccHHHHHHHHHHHHhc---
Confidence            45679999999999999999999999999999999988775421 0000      0 01346678888888888877   


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+.|+|.+.-+.=--.+        .|+|++|++|.+.|..|+.+|.
T Consensus        76 Gg~IVDyHgCd~Fperw--------fdlVvVLr~~~s~LY~RL~sRg  114 (176)
T KOG3347|consen   76 GGNIVDYHGCDFFPERW--------FDLVVVLRTPNSVLYDRLKSRG  114 (176)
T ss_pred             CCcEEeecccCccchhh--------eeEEEEEecCchHHHHHHHHcC
Confidence            45678864322100112        4789999999999999999996

>PRK06762 hypothetical protein; Provisional

Probab=99.55  E-value=4.5e-13  Score=98.22  Aligned_cols=125  Identities=18%  Similarity=0.257  Sum_probs=75.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l--g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (182)
                      |.+|+|+|+|||||||+++.|++.+  +..+++.|.+..........           ......+.....+...+.  .+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~--~g   68 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDG-----------PGNLSIDLIEQLVRYGLG--HC   68 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCC-----------CCCcCHHHHHHHHHHHHh--CC
Confidence            6799999999999999999999999  45567765554332211000           011122223333333332  35


Q ss_pred             CcEEEeCCCCCHHHHHH---HHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176           99 DKFLIDGFPRNEENRAA---FEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI  162 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~---l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~  162 (182)
                      ..+|+|+......++..   +....+ .+..+|||++|.+++.+|..+|...   +.++.+++..+.
T Consensus        69 ~~vild~~~~~~~~~~~~~~l~~~~~-~~~~~v~Ldap~e~~~~R~~~R~~~---~~~~~~~l~~~~  131 (166)
T PRK06762         69 EFVILEGILNSDRYGPMLKELIHLFR-GNAYTYYFDLSFEETLRRHSTRPKS---HEFGEDDMRRWW  131 (166)
T ss_pred             CEEEEchhhccHhHHHHHHHHHHhcC-CCeEEEEEeCCHHHHHHHHhccccc---ccCCHHHHHHHH
Confidence            67888886444333333   333222 3568999999999999999988532   234445555544

>PRK13949 shikimate kinase; Provisional

Probab=99.53  E-value=6.6e-13  Score=97.91  Aligned_cols=115  Identities=20%  Similarity=0.309  Sum_probs=74.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  102 (182)
                      .|+|+|+|||||||+++.|++.+++.+++.|+++.+....  .....++   ..+.....+...+++.++...   ..+|
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~--~~~~~~~---~~g~~~fr~~e~~~l~~l~~~---~~~v   74 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK--TVGDIFA---ERGEAVFRELERNMLHEVAEF---EDVV   74 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc--cHHHHHH---HhCHHHHHHHHHHHHHHHHhC---CCEE
Confidence            5899999999999999999999999999999887655432  1222221   123223333444455543212   2344


Q ss_pred             E-eC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCC
Q 030176          103 I-DG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQK  150 (182)
Q Consensus       103 l-dg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~  150 (182)
                      + .|  .+...+....+.+     .+++|||++|.+.+.+|+..+...|+.
T Consensus        75 is~Ggg~~~~~~~~~~l~~-----~~~vi~L~~~~~~~~~Ri~~~~~~RP~  120 (169)
T PRK13949         75 ISTGGGAPCFFDNMELMNA-----SGTTVYLKVSPEVLFVRLRLAKQQRPL  120 (169)
T ss_pred             EEcCCcccCCHHHHHHHHh-----CCeEEEEECCHHHHHHHHhcCCCCCCC
Confidence            4 44  4455555555532     358999999999999999854334543

>PRK03839 putative kinase; Provisional

Probab=99.52  E-value=1.1e-13  Score=102.79  Aligned_cols=99  Identities=19%  Similarity=0.363  Sum_probs=67.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~  101 (182)
                      +|+|+|+|||||||+++.|++++++.+++.|+++++..     .+....+        ..+.....+...+.. ..+..+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~v   68 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD--------EMEIDFDKLAYFIEEEFKEKNV   68 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh--------hhhcCHHHHHHHHHHhccCCCE
Confidence            58999999999999999999999999999999876531     1110000        001112223222222 124568


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||+...          + ..++++|+|++|.+.+.+|+.+|.
T Consensus        69 IidG~~~~----------l-~~~~~vi~L~~~~~~~~~Rl~~R~  101 (180)
T PRK03839         69 VLDGHLSH----------L-LPVDYVIVLRAHPKIIKERLKERG  101 (180)
T ss_pred             EEEecccc----------c-cCCCEEEEEECCHHHHHHHHHHcC
Confidence            89996432          1 247899999999999999999884

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.50  E-value=2.1e-13  Score=98.97  Aligned_cols=103  Identities=18%  Similarity=0.328  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  100 (182)
                      ++|+|+|+||+||||+|+.|+ .+|+.++...+++.+....- .+..       ........+.+...+...+.   ...
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~-------r~s~~vD~d~~~~~le~~~~---~~~   69 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDEL-------RKSVIVDVDKLRKRLEELLR---EGS   69 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCc-------cceEEeeHHHHHHHHHHHhc---cCC
Confidence            479999999999999999998 99999999988776653310 0000       00122334444555555442   246


Q ss_pred             EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .|+|++...         .+. .+|++|.|.++++.|.+|+++|.
T Consensus        70 ~Ivd~H~~h---------l~~-~~dlVvVLR~~p~~L~~RLk~RG  104 (180)
T COG1936          70 GIVDSHLSH---------LLP-DCDLVVVLRADPEVLYERLKGRG  104 (180)
T ss_pred             eEeechhhh---------cCC-CCCEEEEEcCCHHHHHHHHHHcC
Confidence            679986332         122 47999999999999999999994

>PRK04040 adenylate kinase; Provisional

Probab=99.50  E-value=1.4e-12  Score=97.77  Aligned_cols=119  Identities=19%  Similarity=0.260  Sum_probs=70.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SG   97 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l--g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~   97 (182)
                      +++|+|+|+|||||||+++.|++.+  ++.+++.++++++........ ...++...... ......-.+..+.+.. ..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~-~~~d~~r~l~~-~~~~~~~~~a~~~i~~~~~   79 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLV-EHRDEMRKLPP-EEQKELQREAAERIAEMAG   79 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCC-CCHHHHhhCCh-hhhHHHHHHHHHHHHHhhc
Confidence            5789999999999999999999999  899999999987765532110 00011111111 0001111122222222 23


Q ss_pred             CCcEEEeCCCCC-------HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           98 NDKFLIDGFPRN-------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        98 ~~~~ildg~~~~-------~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      +..+|+|++...       ...-.+..+  ...|+.+|++++|++.+.+|+.+
T Consensus        80 ~~~~~~~~h~~i~~~~g~~~~~~~~~~~--~l~pd~ii~l~a~p~~i~~Rrl~  130 (188)
T PRK04040         80 EGPVIVDTHATIKTPAGYLPGLPEWVLE--ELNPDVIVLIEADPDEILMRRLR  130 (188)
T ss_pred             CCCEEEeeeeeeccCCCCcCCCCHHHHh--hcCCCEEEEEeCCHHHHHHHHhc
Confidence            455889985321       000111112  23689999999999999988885

>PRK00625 shikimate kinase; Provisional

Probab=99.49  E-value=9.8e-13  Score=97.25  Aligned_cols=113  Identities=12%  Similarity=0.146  Sum_probs=68.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      .|+|+|+|||||||+++.|++.+++.+++.|+++.+......  .....+.. ..|.....+.....+.++ ..  ...+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~--~~~i~eif~~~Ge~~fr~~E~~~l~~l-~~--~~~V   76 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL--YSSPKEIYQAYGEEGFCREEFLALTSL-PV--IPSI   76 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC--CCCHHHHHHHHCHHHHHHHHHHHHHHh-cc--CCeE
Confidence            589999999999999999999999999999999887654310  00111111 112222222222333332 11  2334


Q ss_pred             EEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |..|  .+...+.+..+    . ...++|||++|.+.+.+|+.+|.
T Consensus        77 Is~GGg~~~~~e~~~~l----~-~~~~Vv~L~~~~e~l~~Rl~~R~  117 (173)
T PRK00625         77 VALGGGTLMIEPSYAHI----R-NRGLLVLLSLPIATIYQRLQKRG  117 (173)
T ss_pred             EECCCCccCCHHHHHHH----h-cCCEEEEEECCHHHHHHHHhcCC
Confidence            3333  22333222222    2 23579999999999999999874

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.48  E-value=1.3e-12  Score=95.51  Aligned_cols=110  Identities=17%  Similarity=0.289  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      +.|+++|++||||||+.+.||+.|++.++|.|.++.+..+.  .....+   -..|+....+.-.+.+.++....  ..+
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~--sI~eIF---~~~GE~~FR~~E~~vl~~l~~~~--~~V   75 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGM--SIAEIF---EEEGEEGFRRLETEVLKELLEED--NAV   75 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCc--CHHHHH---HHHhHHHHHHHHHHHHHHHhhcC--CeE
Confidence            45899999999999999999999999999999998887652  222222   12244444455555666665442  244


Q ss_pred             EEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus       102 ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      |-.|  .....+.+..+..     --++|||++|.+.+++|+..
T Consensus        76 iaTGGG~v~~~enr~~l~~-----~g~vv~L~~~~e~l~~Rl~~  114 (172)
T COG0703          76 IATGGGAVLSEENRNLLKK-----RGIVVYLDAPFETLYERLQR  114 (172)
T ss_pred             EECCCccccCHHHHHHHHh-----CCeEEEEeCCHHHHHHHhcc
Confidence            3443  3344544544432     22799999999999999993

>PRK13973 thymidylate kinase; Provisional

Probab=99.46  E-value=7.3e-12  Score=95.63  Aligned_cols=122  Identities=24%  Similarity=0.370  Sum_probs=74.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecH--------HHHHHHHHHcCC--hhhHHHHHHHHcCCCCCHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA--------GDLLRAEIKSGS--ENGTMIQNMIKEGKIVPSEVTI   86 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~--------~di~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   86 (182)
                      ++.+|+|.|+.||||||+++.|++.|   |+.++..        ++.+++......  ..+.....++...  ...+...
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~   79 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE   79 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence            47899999999999999999999999   7776544        566665544311  1111111111100  0111222


Q ss_pred             HHHHHHHHhcCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           87 KLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        87 ~~l~~~l~~~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+...+.  .+..+|.|.|..+            ..+...+....  ...||++|+||+|++++.+|+.+|.
T Consensus        80 ~~i~~~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~  150 (213)
T PRK13973         80 EVIRPALA--RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRR  150 (213)
T ss_pred             HHHHHHHH--CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            33333333  3567777876421            22333443322  2469999999999999999999885

>PRK07261 topology modulation protein; Provisional

Probab=99.45  E-value=4.4e-13  Score=98.99  Aligned_cols=99  Identities=18%  Similarity=0.227  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  102 (182)
                      .|+|+|+|||||||+++.|++.+++++++.|++.+....                ...+.+.....+.+.+.+   ..+|
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---~~wI   62 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------QERDDDDMIADISNFLLK---HDWI   62 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------ccCCHHHHHHHHHHHHhC---CCEE
Confidence            589999999999999999999999998888766432110                112334455555555544   3489


Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       103 ldg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +||..........+.     ..|.+|+|+.|...+..|+.+|.
T Consensus        63 idg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR~  100 (171)
T PRK07261         63 IDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKRY  100 (171)
T ss_pred             EcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHHH
Confidence            999765433222232     35889999999999999999986

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.44  E-value=7.9e-12  Score=91.70  Aligned_cols=112  Identities=18%  Similarity=0.250  Sum_probs=70.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  100 (182)
                      ++|+|+|++||||||+++.|++.+|+.+++.++++++..... ...... .........+ ...+...+.+...  ....
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~-~~~~~~~i~~~~~--~~~~   76 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEF-LNYAEENPEI-DKKIDRRIHEIAL--KEKN   76 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHH-HHHHhcCcHH-HHHHHHHHHHHHh--cCCC
Confidence            379999999999999999999999999999998877765421 111111 1111111100 1122222222221  2346


Q ss_pred             EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +|++|.....     +   ....++++|++++|.+.+.+|+.+|.
T Consensus        77 ~Vi~g~~~~~-----~---~~~~~d~~v~v~a~~~~r~~R~~~R~  113 (171)
T TIGR02173        77 VVLESRLAGW-----I---VREYADVKIWLKAPLEVRARRIAKRE  113 (171)
T ss_pred             EEEEecccce-----e---ecCCcCEEEEEECCHHHHHHHHHHcc
Confidence            7788853221     1   12236789999999999999999884

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.44  E-value=2.6e-12  Score=96.83  Aligned_cols=128  Identities=19%  Similarity=0.141  Sum_probs=78.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-----CC-CCCHHH-----------
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GK-IVPSEV-----------   84 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~-----------   84 (182)
                      ++|+|+|++||||||+++.|++.+|+.+++.|++.++....+......+.+....     .. .++...           
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            4799999999999999999999889999999999988887665444333332211     11 122111           


Q ss_pred             -------HHHHH----HHHHHhc-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCC
Q 030176           85 -------TIKLL----QKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLP  152 (182)
Q Consensus        85 -------~~~~l----~~~l~~~-~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~  152 (182)
                             +...+    .+.+... ....+++|- |...      ...+....|.+|++++|.+.+++|+.+|+      .
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~------E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~------g  148 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLF------EAKLTDLCSEIWVVDCSPEQQLQRLIKRD------G  148 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhc------CcchHhCCCEEEEEECCHHHHHHHHHHcC------C
Confidence                   11111    1112111 123444553 1110      01111236889999999999999999883      3


Q ss_pred             cchHHHHHHH
Q 030176          153 FSWGVFCLFI  162 (182)
Q Consensus       153 ~~~~~~~~~~  162 (182)
                      .+.+++...+
T Consensus       149 ~s~e~~~~ri  158 (195)
T PRK14730        149 LTEEEAEARI  158 (195)
T ss_pred             CCHHHHHHHH
Confidence            4556666655

>PRK06547 hypothetical protein; Provisional

Probab=99.44  E-value=4.7e-13  Score=98.89  Aligned_cols=128  Identities=16%  Similarity=0.209  Sum_probs=73.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCC--CHHHHHHHHHHHH
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV--PSEVTIKLLQKAM   93 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l   93 (182)
                      +....+.+|+|+|++||||||+++.|++.++...++.|+++................+...+...  +.+..........
T Consensus        10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~   89 (172)
T PRK06547         10 LCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWV   89 (172)
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcE
Confidence            44567789999999999999999999999999999988876432211111112222222222110  0000000000000


Q ss_pred             HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .-.....+|++|..........+.+  ....-+.||+++|.+++.+|+.+|.
T Consensus        90 ~l~~~~vVIvEG~~al~~~~r~~~d--~~g~v~~I~ld~~~~vr~~R~~~Rd  139 (172)
T PRK06547         90 SVEPGRRLIIEGVGSLTAANVALAS--LLGEVLTVWLDGPEALRKERALARD  139 (172)
T ss_pred             EeCCCCeEEEEehhhccHHHHHHhc--cCCCEEEEEEECCHHHHHHHHHhcC
Confidence            0012356778986333333222211  1112279999999999999999995

>PRK08233 hypothetical protein; Provisional

Probab=99.44  E-value=1.7e-12  Score=96.17  Aligned_cols=114  Identities=17%  Similarity=0.140  Sum_probs=60.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC---HHHHHHHHHHHHHhc
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP---SEVTIKLLQKAMEES   96 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~   96 (182)
                      ++.+|+|+|+|||||||+|+.|++.++...+...|..+...     .......+...+..+.   .+...+.+.......
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   76 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN-----CPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS   76 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc-----CchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC
Confidence            46899999999999999999999998632221111111000     0011111222222221   112222222222222


Q ss_pred             CCCcEEEeCC-CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           97 GNDKFLIDGF-PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        97 ~~~~~ildg~-~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ....+|+|+. ......   +.    ..+|++|||++|.+++++|+.+|.
T Consensus        77 ~~~~vivd~~~~~~~~~---~~----~~~d~~i~l~~~~~~~~~R~~~R~  119 (182)
T PRK08233         77 NVDYIIVDYPFAYLNSE---MR----QFIDVTIFIDTPLDIAMARRILRD  119 (182)
T ss_pred             CceEEEEeeehhhccHH---HH----HHcCEEEEEcCCHHHHHHHHHHHH
Confidence            2234555653 111112   11    126899999999999999988885

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.43  E-value=5e-12  Score=91.11  Aligned_cols=112  Identities=17%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC----HHHHHH---HHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----SEVTIK---LLQKAMEE   95 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~l~~~l~~   95 (182)
                      +|+|+|+|||||||+++.|++.++..+++.|++.......          .+..+...+    ......   .....+. 
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-   69 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIA----------KMAAGIPLNDEDRWPWLQALTDALLAKLA-   69 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHH----------HHHcCCCCCccchhhHHHHHHHHHHHHHH-
Confidence            4889999999999999999999999999987775432210          001111111    111111   1111111 


Q ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+..+|++.-......+..+.......+..+|++++|.+++.+|+.+|.
T Consensus        70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~  119 (150)
T cd02021          70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK  119 (150)
T ss_pred             hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence            13456777764455566655655431234468999999999999999884

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.42  E-value=1.4e-12  Score=104.18  Aligned_cols=120  Identities=23%  Similarity=0.313  Sum_probs=74.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~   99 (182)
                      +.+|+++|+|||||||+|+.|++.+ ++.+++.|++........ ..+..  .+.........+.....+...+.  .+.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g~   76 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHG-EWGEY--KFTKEKEDLVTKAQEAAALAALK--SGK   76 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCC-ccccc--ccChHHHHHHHHHHHHHHHHHHH--cCC
Confidence            4689999999999999999999999 899999877543322211 11000  00000000001111222233322  346


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhC-CCCc-EEEEEecCHHHHHHHHHhhh
Q 030176          100 KFLIDGFPRNEENRAAFEAVTK-IEPE-FVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       100 ~~ildg~~~~~~q~~~l~~~~~-~~~~-~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+|+|+.+....++..+..... .... .+|+|++|.+++.+|+.+|.
T Consensus        77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~  124 (300)
T PHA02530         77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG  124 (300)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC
Confidence            7889998888777776655431 1122 36889999999999999984

>PRK13948 shikimate kinase; Provisional

Probab=99.41  E-value=8.1e-12  Score=93.03  Aligned_cols=113  Identities=14%  Similarity=0.091  Sum_probs=73.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (182)
                      +++..|+|+|++||||||+++.|++.+|+.++|.|.++.+..+.  .....+   ...|.....+...+.+.+++..  .
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~--si~~if---~~~Ge~~fR~~E~~~l~~l~~~--~   80 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGK--SIPEIF---RHLGEAYFRRCEAEVVRRLTRL--D   80 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhC--CHHHHH---HHhCHHHHHHHHHHHHHHHHhc--C
Confidence            45689999999999999999999999999999999887766543  111211   1223333334444555555433  2


Q ss_pred             CcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           99 DKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        99 ~~~ild--g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      ..+|.-  |.+.....+..+.+     -..+|||++|.+.+.+|+..
T Consensus        81 ~~VIa~GgG~v~~~~n~~~l~~-----~g~vV~L~~~~e~l~~Rl~~  122 (182)
T PRK13948         81 YAVISLGGGTFMHEENRRKLLS-----RGPVVVLWASPETIYERTRP  122 (182)
T ss_pred             CeEEECCCcEEcCHHHHHHHHc-----CCeEEEEECCHHHHHHHhcC
Confidence            233332  23344444444432     23688999999999999954

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=1.4e-12  Score=92.95  Aligned_cols=120  Identities=18%  Similarity=0.229  Sum_probs=83.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH---h--
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME---E--   95 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~--   95 (182)
                      +-+|+++|++||||||+++.|+++|++.+++.||++...+..+          +..|..+.++....+|++...   .  
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveK----------M~~GipLnD~DR~pWL~~i~~~~~~~l   81 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEK----------MTQGIPLNDDDRWPWLKKIAVELRKAL   81 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHH----------HhcCCCCCcccccHHHHHHHHHHHHHh
Confidence            3489999999999999999999999999999999988776653          333544544444444433221   1  


Q ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHhC-----CCC---cEEEEEecCHHHHHHHHHhhhccCCC
Q 030176           96 SGNDKFLIDGFPRNEENRAAFEAVTK-----IEP---EFVLFFDCSEEEMERRILNRNQVRQK  150 (182)
Q Consensus        96 ~~~~~~ildg~~~~~~q~~~l~~~~~-----~~~---~~vI~ld~~~~~l~~R~~~R~~~r~~  150 (182)
                      .++.++|+-.-.....+++-++..+.     ..|   -.+|+|.++.+++..|+.+|..+-..
T Consensus        82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp  144 (191)
T KOG3354|consen   82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMP  144 (191)
T ss_pred             hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCC
Confidence            24577777765455666655555332     112   24777999999999999999654443

>PRK13946 shikimate kinase; Provisional

Probab=99.39  E-value=2e-11  Score=91.19  Aligned_cols=114  Identities=18%  Similarity=0.253  Sum_probs=72.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~   99 (182)
                      .+..|+++|++||||||+++.|++.+|+.+++.|.++....+.  .....+..   .+.....+...+.+...+..  ..
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~--~~~e~~~~---~ge~~~~~~e~~~l~~l~~~--~~   81 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARM--TIAEIFAA---YGEPEFRDLERRVIARLLKG--GP   81 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCC--CHHHHHHH---HCHHHHHHHHHHHHHHHHhc--CC
Confidence            4567999999999999999999999999999998876555422  22121111   12212222333444444432  23


Q ss_pred             cEEEeCC--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          100 KFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       100 ~~ildg~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+|..|.  ......+..+..     -.++|||++|.+.+.+|+.+|.
T Consensus        82 ~Vi~~ggg~~~~~~~r~~l~~-----~~~~v~L~a~~e~~~~Rl~~r~  124 (184)
T PRK13946         82 LVLATGGGAFMNEETRAAIAE-----KGISVWLKADLDVLWERVSRRD  124 (184)
T ss_pred             eEEECCCCCcCCHHHHHHHHc-----CCEEEEEECCHHHHHHHhcCCC
Confidence            4545543  233444444432     2478999999999999999774

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.39  E-value=1.4e-11  Score=92.75  Aligned_cols=128  Identities=20%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-----CCCCCHHHH-----------
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT-----------   85 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------   85 (182)
                      .+|+|+|++||||||+++.|++ +|+.+++.|++.++....+......+.+....     ...++....           
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            5799999999999999999987 99999999999998876554433333322111     111221111           


Q ss_pred             -------HHH----HHHHHHhcC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176           86 -------IKL----LQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF  153 (182)
Q Consensus        86 -------~~~----l~~~l~~~~-~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~  153 (182)
                             ...    +.+.+.... ...+++|.- ..      +...+....|.+|++++|.+.+.+|+.+|+      ..
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p-ll------~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~------~~  148 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIP-LL------FENGLEKLVDRVLVVDAPPETQLERLMARD------GL  148 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh-Hh------hcCCchhhCCeEEEEECCHHHHHHHHHHcC------CC
Confidence                   111    111111111 235556642 11      111111236899999999999999999883      34


Q ss_pred             chHHHHHHHH
Q 030176          154 SWGVFCLFIM  163 (182)
Q Consensus       154 ~~~~~~~~~~  163 (182)
                      +.+++...+.
T Consensus       149 s~e~~~~ri~  158 (194)
T PRK00081        149 SEEEAEAIIA  158 (194)
T ss_pred             CHHHHHHHHH
Confidence            5667776664

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.38  E-value=2e-11  Score=92.02  Aligned_cols=123  Identities=15%  Similarity=0.221  Sum_probs=74.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhh----HHHHH-HHHcCCCCCH----------HH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG----TMIQN-MIKEGKIVPS----------EV   84 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~----~~~~~-~~~~~~~~~~----------~~   84 (182)
                      .+.+|+|+|+|||||||+++.|++++|+.++..+|++++........+    .+..+ +...+....+          +.
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999998887432211    11000 0000111111          11


Q ss_pred             HHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEe-cCHHHHHHHHHhhhc
Q 030176           85 TIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQ  146 (182)
Q Consensus        85 ~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld-~~~~~l~~R~~~R~~  146 (182)
                      +...+......  ..+..+|+|+.......+.... ..  .. .++++. .+.+.+.+|+..|..
T Consensus        82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~-~~--~v-~~i~l~v~d~e~lr~Rl~~R~~  142 (197)
T PRK12339         82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR-TN--NI-RAFYLYIRDAELHRSRLADRIN  142 (197)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH-hc--Ce-EEEEEEeCCHHHHHHHHHHHhh
Confidence            12222222222  2467888998655555543221 11  22 445554 478888899999963

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.37  E-value=9.6e-12  Score=92.48  Aligned_cols=126  Identities=20%  Similarity=0.188  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcC-----CCCCH---------------
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPS---------------   82 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------   82 (182)
                      +|+|+|++||||||+++.|++ +|+.+++.|++.++....+......+.+.....     ..+..               
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999987 999999999999988776554433333322111     11111               


Q ss_pred             ---HHHHHHHHHHH----HhcCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcc
Q 030176           83 ---EVTIKLLQKAM----EESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFS  154 (182)
Q Consensus        83 ---~~~~~~l~~~l----~~~~~-~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~  154 (182)
                         ..+...+.+.+    ..... ..++++.. ...+.      .+....|.++++++|.+..++|+.+|+      ..+
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~p-lL~e~------~~~~~~D~vv~V~a~~~~ri~Rl~~Rd------~~s  146 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDIP-LLFET------GLEKLVDRVIVVDAPPEIQIERLMKRD------GLS  146 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEEeh-HhhcC------CcHHhCCeEEEEECCHHHHHHHHHHcC------CCC
Confidence               11112222221    11112 34555642 11111      011135899999999999999999884      345


Q ss_pred             hHHHHHHH
Q 030176          155 WGVFCLFI  162 (182)
Q Consensus       155 ~~~~~~~~  162 (182)
                      .+++...+
T Consensus       147 ~~~~~~r~  154 (179)
T cd02022         147 EEEAEARI  154 (179)
T ss_pred             HHHHHHHH
Confidence            55555555

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK04182 cytidylate kinase; Provisional

Probab=99.37  E-value=6.5e-12  Score=92.82  Aligned_cols=110  Identities=24%  Similarity=0.341  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCC--HHHHHHHHHHHHHhcCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVP--SEVTIKLLQKAMEESGN   98 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~   98 (182)
                      ++|+|+|++||||||+++.|++.+|+.+++.+++++..... +.....    +...+...+  .......+.....  ..
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~   74 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEE----FNKYAEEDPEIDKEIDRRQLEIAE--KE   74 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHH----HHHHhhcCchHHHHHHHHHHHHHh--cC
Confidence            37999999999999999999999999999998888776542 222111    111122122  1222222222221  23


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+|+++.....     +.   ...++++||+++|.+.+.+|+.+|.
T Consensus        75 ~~~Vi~g~~~~~-----~~---~~~~~~~V~l~a~~e~~~~Rl~~r~  113 (180)
T PRK04182         75 DNVVLEGRLAGW-----MA---KDYADLKIWLKAPLEVRAERIAERE  113 (180)
T ss_pred             CCEEEEEeecce-----Ee---cCCCCEEEEEECCHHHHHHHHHhcc
Confidence            466788732210     11   1126789999999999999999874

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.37  E-value=6.3e-12  Score=93.26  Aligned_cols=132  Identities=15%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH-HHHHHHHHHHHHhcCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEESGN   98 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~   98 (182)
                      .+.+++|+|++||||||+++.|+..++...++.+++...........+..+++    ....+. ..+.+..... .....
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~----~~~~~~~~~~~~~~~~~-~~~~~   76 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTD----EDRLPWLERLNDASYSL-YKKNE   76 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCc----ccchHHHHHHHHHHHHH-HhcCC
Confidence            46789999999999999999999999888888776533211100000000000    000111 1112222222 22223


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHH
Q 030176           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIM  163 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~  163 (182)
                      .++|+-.+ ....++..+ +..+ .+..+|||++|.+.+.+|+.+|..    +..+.+.+..+++
T Consensus        77 ~g~iv~s~-~~~~~R~~~-r~~~-~~~~~v~l~a~~~~l~~Rl~~R~~----~~~~~~vl~~Q~~  134 (176)
T PRK09825         77 TGFIVCSS-LKKQYRDIL-RKSS-PNVHFLWLDGDYETILARMQRRAG----HFMPPDLLQSQFD  134 (176)
T ss_pred             CEEEEEEe-cCHHHHHHH-HhhC-CCEEEEEEeCCHHHHHHHHhcccC----CCCCHHHHHHHHH
Confidence            56666444 344444444 3333 355789999999999999998852    3356777776553

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.36  E-value=7.3e-12  Score=92.02  Aligned_cols=115  Identities=24%  Similarity=0.362  Sum_probs=71.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (182)
                      +++..|+|+|+|||||||+++.|++.+|+.+++.++++....+..  ....+++   .+.....+.....+.++...  .
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~--~~~~~~~---~g~~~~~~~~~~~~~~l~~~--~   74 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKS--IPEIFEE---EGEAAFRELEEEVLAELLAR--H   74 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCC--HHHHHHH---HCHHHHHHHHHHHHHHHHhc--C
Confidence            567899999999999999999999999999999988876543321  1111111   12111123333444444432  2


Q ss_pred             CcEEEeCC--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+|..+.  ......+..+.     ...++||+++|.+.+.+|+.+|.
T Consensus        75 ~~vi~~g~~~~~~~~~r~~l~-----~~~~~v~l~~~~~~~~~R~~~~~  118 (175)
T PRK00131         75 NLVISTGGGAVLREENRALLR-----ERGTVVYLDASFEELLRRLRRDR  118 (175)
T ss_pred             CCEEEeCCCEeecHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCC
Confidence            23444332  22223333331     13478999999999999998764

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.36  E-value=9.5e-12  Score=88.94  Aligned_cols=122  Identities=14%  Similarity=0.177  Sum_probs=72.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  102 (182)
                      +|+|+|+|||||||+|+.|++.+|+++++.+.+.......      .... .. ....-++.....+.+..   ....+|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~~~-~~-~~~~i~~~l~~~~~~~~---~~~~~V   69 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LASE-VA-AIPEVRKALDERQRELA---KKPGIV   69 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HHHH-hc-ccHhHHHHHHHHHHHHh---hCCCEE
Confidence            4899999999999999999999999999987443222111      0000 00 00000111222222222   124688


Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHH
Q 030176          103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIML  164 (182)
Q Consensus       103 ldg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (182)
                      +||......        .....+++||+++|.+.+.+|+.+|...+ .+..+.++....+..
T Consensus        70 idg~~~~~~--------~~~~~~~~i~l~~~~~~r~~R~~~r~~~~-~~~~~~~~~~~~~~~  122 (147)
T cd02020          70 LEGRDIGTV--------VFPDADLKIFLTASPEVRAKRRAKQLQAK-GEGVDLEEILAEIIE  122 (147)
T ss_pred             EEeeeeeeE--------EcCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Confidence            998643210        11236799999999999999999986433 233455665555543

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=3.7e-12  Score=90.16  Aligned_cols=121  Identities=16%  Similarity=0.173  Sum_probs=80.7

Q ss_pred             EcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH---HHh--cCCCcE
Q 030176           27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA---MEE--SGNDKF  101 (182)
Q Consensus        27 ~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---l~~--~~~~~~  101 (182)
                      +|.+||||||++..|++++|..+++.|+++...+-.+          +..|..+.++....+|...   +.+  ..+...
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~K----------M~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~   70 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEK----------MSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV   70 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHH----------HhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence            5899999999999999999999999999987766543          3445555554444444332   222  233445


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHH
Q 030176          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFC  159 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~  159 (182)
                      |+-.-.....+++.++.... + -.+|||+.+.+.+.+|+.+|..+-.+...-..||.
T Consensus        71 vi~CSALKr~YRD~LR~~~~-~-~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa  126 (161)
T COG3265          71 VIACSALKRSYRDLLREANP-G-LRFVYLDGDFDLILERMKARKGHFMPASLLDSQFA  126 (161)
T ss_pred             EEecHHHHHHHHHHHhccCC-C-eEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence            55554445666666655442 2 24888999999999999999755544443344443

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.36  E-value=6.7e-12  Score=94.96  Aligned_cols=133  Identities=20%  Similarity=0.250  Sum_probs=83.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCc---EecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH--
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME--   94 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~---~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--   94 (182)
                      ++.+|+|+|++||||||+|+.|...|+..   .++.|+++.........      +....+...|...-.+++.+.+.  
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~------~~~~~n~d~p~A~D~dLl~~~L~~L   80 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFE------ERNKINYDHPEAFDLDLLIEHLKDL   80 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHh------hcCCcCccChhhhcHHHHHHHHHHH
Confidence            45799999999999999999999999843   66777776644332111      11111334444444444443332  


Q ss_pred             --h----------------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh-ccCC
Q 030176           95 --E----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QVRQ  149 (182)
Q Consensus        95 --~----------------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~-~~r~  149 (182)
                        .                      .....+|++|+.....  +.+++.    .|+.||+|+|.+.+..|...|+ +.|.
T Consensus        81 ~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~----~d~kIfvdtd~D~RliRri~RD~~~rg  154 (218)
T COG0572          81 KQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDL----MDLKIFVDTDADVRLIRRIKRDVQERG  154 (218)
T ss_pred             HcCCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhh----cCEEEEEeCCccHHHHHHHHHHHHHhC
Confidence              1                      1357888999644332  223332    4799999999999999999988 3455


Q ss_pred             CCCc-chHHHHHHHHH
Q 030176          150 KLPF-SWGVFCLFIML  164 (182)
Q Consensus       150 ~~~~-~~~~~~~~~~~  164 (182)
                      .+.. ..++|....+-
T Consensus       155 ~~~e~vi~qy~~~vkp  170 (218)
T COG0572         155 RDLESVIEQYVKTVRP  170 (218)
T ss_pred             CCHHHHHHHHHHhhCh
Confidence            4432 35666654433

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.35  E-value=3.6e-11  Score=91.01  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=39.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS   62 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~   62 (182)
                      -.|.+|+|+|++||||||+++.|++.+|+.+++.|.+.++....
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~   47 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK   47 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc
Confidence            45678999999999999999999989999999999998887654

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.35  E-value=2.2e-11  Score=90.17  Aligned_cols=121  Identities=13%  Similarity=0.206  Sum_probs=67.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCChhhHHHHHHHHcC--CCCCHH---HHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSE---VTIKLLQKAM   93 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~l~~~l   93 (182)
                      +++|+|+|+|||||||+++.|++.++.  .+++.|++........... .  .....++  ...+++   .....+...+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~   78 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDA-E--GGIEFDGDGGVSPGPEFRLLEGAWYEAV   78 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccc-c--cccccCccCCcccchHHHHHHHHHHHHH
Confidence            578999999999999999999998864  3446655544322110000 0  0000000  001111   1222222222


Q ss_pred             Hh--cCCCcEEEeC-CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           94 EE--SGNDKFLIDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        94 ~~--~~~~~~ildg-~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..  ..+..+|+|. +......+..+....+ .+-+.|++++|.+++.+|+.+|.
T Consensus        79 ~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R~  132 (175)
T cd00227          79 AAMARAGANVIADDVFLGRAALQDCWRSFVG-LDVLWVGVRCPGEVAEGRETARG  132 (175)
T ss_pred             HHHHhCCCcEEEeeeccCCHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhcC
Confidence            11  2356777886 4323333333433333 34578889999999999999884

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.35  E-value=8.5e-12  Score=94.15  Aligned_cols=43  Identities=30%  Similarity=0.540  Sum_probs=38.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS   64 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~   64 (182)
                      ..+|+|||.+||||||+++.+++ +|++.++.|++.++....+.
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~   44 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGG   44 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccc
Confidence            46899999999999999998877 99999999999998877653

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.35  E-value=3.8e-11  Score=86.56  Aligned_cols=110  Identities=20%  Similarity=0.295  Sum_probs=65.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~il  103 (182)
                      |+|+|+|||||||+++.|++.+|+.+++.++++......  .....++..   +...-.+...+.+.... . ....+|.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~~~~~~~~e~~~~~~~~-~-~~~~vi~   74 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---GEEGFRELEREVLLLLL-T-KENAVIA   74 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---CHHHHHHHHHHHHHHHh-c-cCCcEEE
Confidence            789999999999999999999999999999887666433  111211111   11111111111222222 1 2233333


Q ss_pred             eC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          104 DG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       104 dg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+  +......+..+    . ...++||+++|.+.+.+|+.+|+
T Consensus        75 ~g~~~i~~~~~~~~~----~-~~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          75 TGGGAVLREENRRLL----L-ENGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             CCCCccCcHHHHHHH----H-cCCeEEEEeCCHHHHHHHhccCC
Confidence            33  22223222222    1 24589999999999999999875

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.35  E-value=8.6e-11  Score=86.47  Aligned_cols=111  Identities=18%  Similarity=0.308  Sum_probs=67.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      ..|+|+|++||||||+++.|++.+|+.+++.|.++.......  ....++   ..++....+...+.+. .+.  ....+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~--~~~~~~---~~g~~~~~~~e~~~~~-~~~--~~~~v   74 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMT--VAEIVE---REGWAGFRARESAALE-AVT--APSTV   74 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCC--HHHHHH---HHCHHHHHHHHHHHHH-Hhc--CCCeE
Confidence            358899999999999999999999999999988876654321  111111   1121111122223332 221  12233


Q ss_pred             EEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |..|  ++.....+..+.     ..+++|||++|.+.+.+|+..|.
T Consensus        75 i~~ggg~vl~~~~~~~l~-----~~~~~v~l~~~~~~~~~Rl~~r~  115 (171)
T PRK03731         75 IATGGGIILTEENRHFMR-----NNGIVIYLCAPVSVLANRLEANP  115 (171)
T ss_pred             EECCCCccCCHHHHHHHH-----hCCEEEEEECCHHHHHHHHcccc
Confidence            3333  333344443442     24579999999999999998874

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.35  E-value=1.1e-11  Score=92.88  Aligned_cols=30  Identities=30%  Similarity=0.581  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      .++|+|.|+.|+|||||++.||+++|...+
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            578999999999999999999999996554

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.34  E-value=9.1e-11  Score=88.20  Aligned_cols=40  Identities=30%  Similarity=0.499  Sum_probs=37.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~   61 (182)
                      .+|+|-||+||||||+|+.||++||+.++++|-+++....
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~   44 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVAL   44 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHH
Confidence            7899999999999999999999999999999999886544

>TIGR00152 dephospho-CoA kinase

Probab=99.33  E-value=2.3e-11  Score=91.07  Aligned_cols=129  Identities=17%  Similarity=0.209  Sum_probs=76.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-----HHcCCCCCHH--------------
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-----IKEGKIVPSE--------------   83 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------   83 (182)
                      +|+|+|++||||||+++.|++..|+.+++.|++.++....+......+.+.     +.....+...              
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999988877999999999888777654322222111     1111111111              


Q ss_pred             --------HHHHHHHHHHHhc--CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176           84 --------VTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF  153 (182)
Q Consensus        84 --------~~~~~l~~~l~~~--~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~  153 (182)
                              .+...+.+.+...  .+..++++.. .....  .+    ....|.++++++|.+.+.+|+.+|+      ..
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~p-ll~e~--~~----~~~~D~vv~V~~~~~~~~~Rl~~R~------~~  147 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVP-LLFEN--KL----RSLCDRVIVVDVSPQLQLERLMQRD------NL  147 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEch-HhhhC--Cc----HHhCCEEEEEECCHHHHHHHHHHcC------CC
Confidence                    1111122222221  2234555542 22111  11    1125789999999999999999984      34


Q ss_pred             chHHHHHHHHH
Q 030176          154 SWGVFCLFIML  164 (182)
Q Consensus       154 ~~~~~~~~~~~  164 (182)
                      +.++....+..
T Consensus       148 s~~~~~~r~~~  158 (188)
T TIGR00152       148 TEEEVQKRLAS  158 (188)
T ss_pred             CHHHHHHHHHh
Confidence            55666665533

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.32  E-value=2.1e-12  Score=89.66  Aligned_cols=105  Identities=30%  Similarity=0.508  Sum_probs=60.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC--HHHHHHHHHHHHHh----c
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--SEVTIKLLQKAMEE----S   96 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~----~   96 (182)
                      +|+|+|+|||||||+|+.|++.+|+.+++.|++++.....            .......  .....+.+...+..    .
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~   68 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI------------ERDDDEREYIDADIDLLDDILEQLQNKP   68 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC------------HGCTTCCHHHHHHHHHHHHHHHHHHETT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc------------ccCcchhhHHHHHHHHHHHHHHhhhccC
Confidence            5899999999999999999999999999999954211110            0011111  11222333333332    2


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ....+|+++... . .. .+ ...  ..+.+|++++|.+.+.+|+.+|.
T Consensus        69 ~~~~~ii~g~~~-~-~~-~~-~~~--~~~~~i~l~~~~~~~~~~~~~R~  111 (121)
T PF13207_consen   69 DNDNWIIDGSYE-S-EM-EI-RLP--EFDHVIYLDAPDEECRERRLKRR  111 (121)
T ss_dssp             T--EEEEECCSC-H-CC-HS-CCH--HGGCEEEEEEEEHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCc-c-ch-hh-hhh--cCCEEEEEECCCHHHHHHHHHHH
Confidence            456799999322 1 10 11 000  13468889998885555555553

...

>PRK13947 shikimate kinase; Provisional

Probab=99.31  E-value=7.3e-11  Score=86.77  Aligned_cols=111  Identities=15%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  102 (182)
                      .|+|+|+|||||||+++.||+.+|+.+++.|.++....+.  .....++   ..+.....+....++..+...  ...+|
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~--~~~~~~~---~~ge~~~~~~e~~~~~~l~~~--~~~vi   75 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGM--TVAEIFE---KDGEVRFRSEEKLLVKKLARL--KNLVI   75 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCC--cHHHHHH---HhChHHHHHHHHHHHHHHhhc--CCeEE
Confidence            4899999999999999999999999999998876665321  1111111   112111122222333333221  22332


Q ss_pred             EeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       103 ldg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      -.|  .+........+.+     .+++|||++|.+.+.+|+..|.
T Consensus        76 ~~g~g~vl~~~~~~~l~~-----~~~vv~L~~~~~~l~~Rl~~r~  115 (171)
T PRK13947         76 ATGGGVVLNPENVVQLRK-----NGVVICLKARPEVILRRVGKKK  115 (171)
T ss_pred             ECCCCCcCCHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCCC
Confidence            222  2333444434422     2479999999999999998763

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.31  E-value=2.5e-12  Score=96.59  Aligned_cols=116  Identities=22%  Similarity=0.383  Sum_probs=70.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------HHcCChhhHHHHHH--------HHc-
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------IKSGSENGTMIQNM--------IKE-   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~~~~~~~~~~~~~~--------~~~-   76 (182)
                      +++..++.+++|+||+||||||+.++|.   ++..++.|+|..+.         .......|+.+|.+        ++| 
T Consensus        22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN---~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv   98 (240)
T COG1126          22 SLSVEKGEVVVIIGPSGSGKSTLLRCLN---GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV   98 (240)
T ss_pred             ceeEcCCCEEEEECCCCCCHHHHHHHHH---CCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHH
Confidence            4567899999999999999999999997   55545444432221         11112233333332        111 


Q ss_pred             ------CCCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           77 ------GKIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        77 ------~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                            -...+.+.+.+...++|.+.+.... .|.||    ..++|+..+++++..+|++++ +|+|+.
T Consensus        99 ~lap~~v~~~~k~eA~~~A~~lL~~VGL~~k-a~~yP~qLSGGQqQRVAIARALaM~P~vmL-FDEPTS  165 (240)
T COG1126          99 TLAPVKVKKLSKAEAREKALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAMDPKVML-FDEPTS  165 (240)
T ss_pred             HhhhHHHcCCCHHHHHHHHHHHHHHcCchhh-hhhCccccCcHHHHHHHHHHHHcCCCCEEe-ecCCcc
Confidence                  0123344444444555544221111 33444    459999999999999998766 999973

>PRK13975 thymidylate kinase; Provisional

Probab=99.30  E-value=2.2e-10  Score=86.00  Aligned_cols=110  Identities=19%  Similarity=0.315  Sum_probs=63.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH-----------HHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV-----------TIK   87 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~   87 (182)
                      +++|+|.|++||||||+++.|+++++...  ...+          ...+..+++++..+ ......           ...
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~----------~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~   70 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTD----------GKIGKLIREILSGS-KCDKETLALLFAADRVEHVK   70 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCC----------ChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999998432  1111          11223333332222 111100           011


Q ss_pred             HHHHHHHhcCCCcEEEeCCCCC-----------HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           88 LLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        88 ~l~~~l~~~~~~~~ildg~~~~-----------~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+...+.   ...+|.|.+...           ......+. .....|+++|||++|.+++.+|+..|+
T Consensus        71 ~i~~~~~---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~-~~~~~pd~vi~L~~~~e~~~~Rl~~r~  135 (196)
T PRK13975         71 EIEEDLK---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSIN-RYAKKPDLVFLLDVDIEEALKRMETRD  135 (196)
T ss_pred             HHHHHHc---CCEEEEECchhHHHHHhcccCCCHHHHHHHH-hCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence            1122221   246788876432           11111121 123469999999999999999999884

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.30  E-value=5.3e-11  Score=86.93  Aligned_cols=108  Identities=14%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC----HH---HHHHHHHHHHHhc
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----SE---VTIKLLQKAMEES   96 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~l~~~l~~~   96 (182)
                      |+|+|++||||||+++.|++.++..+++.+++.........          ..+....    ..   ...+.+...+.. 
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-   69 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKM----------SAGIPLNDDDRWPWLQNLNDASTAAAAK-   69 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHH----------HcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence            57899999999999999999999999998886432111000          0011011    01   112222222222 


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ....++..++ .....+..+. ..+. ...+|||++|.+++.+|+.+|.
T Consensus        70 ~~~~Vi~~t~-~~~~~r~~~~-~~~~-~~~~i~l~~~~e~~~~R~~~R~  115 (163)
T TIGR01313        70 NKVGIITCSA-LKRHYRDILR-EAEP-NLHFIYLSGDKDVILERMKARK  115 (163)
T ss_pred             CCCEEEEecc-cHHHHHHHHH-hcCC-CEEEEEEeCCHHHHHHHHHhcc
Confidence            2233433444 3344444443 2221 2246889999999999999884

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.30  E-value=3.8e-11  Score=101.78  Aligned_cols=47  Identities=26%  Similarity=0.468  Sum_probs=40.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~   59 (182)
                      ++..-..++.+|+|.||+||||||+++.|+++||+.+++.|++++..
T Consensus       276 DN~~~~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        276 DNVFLMKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             eeeEeccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            44333447789999999999999999999999999999999998875

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.30  E-value=1.2e-10  Score=93.67  Aligned_cols=120  Identities=13%  Similarity=0.184  Sum_probs=74.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   97 (182)
                      +.++..|+|+|++||||||+++.|++.+|+.+++.+..+.+..+..  ....+..   .+.....+...+.+...+... 
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~--i~ei~~~---~G~~~fr~~e~~~l~~ll~~~-  203 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLS--VSEIFAL---YGQEGYRRLERRALERLIAEH-  203 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCC--HHHHHHH---HCHHHHHHHHHHHHHHHHhhC-
Confidence            5677899999999999999999999999999999987766654321  1111111   122222233344455544332 


Q ss_pred             CCcEEEeC-C--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCC
Q 030176           98 NDKFLIDG-F--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQ  149 (182)
Q Consensus        98 ~~~~ildg-~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~  149 (182)
                      . .+|+.. -  +........+..     ..++|||++|.+.+.+|+.+|...|+
T Consensus       204 ~-~~VI~~Ggg~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r~~~rp  252 (309)
T PRK08154        204 E-EMVLATGGGIVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQGDLRP  252 (309)
T ss_pred             C-CEEEECCCchhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcCCCCCC
Confidence            2 234443 2  222222222221     34799999999999999998754443

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.29  E-value=3.6e-11  Score=89.44  Aligned_cols=127  Identities=19%  Similarity=0.218  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-----CCCCCHH-------------
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSE-------------   83 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-------------   83 (182)
                      .+|+|||..||||||+++.|++ +|+.+++.|.+.++....+......+.+....     ...++..             
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            4799999999999999999876 99999999999888877655433333322111     1112211             


Q ss_pred             -----HHHHH----HHHHHHhc-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176           84 -----VTIKL----LQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF  153 (182)
Q Consensus        84 -----~~~~~----l~~~l~~~-~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~  153 (182)
                           ++..+    +.+.+... ....+++|.- ...      ...+....|.+|++.+|.+...+|+.+|+      ..
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~p-LL~------E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~------~~  146 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEIP-LLF------ESGLEKLCDEVIVVYAPEEIRIKRLMERD------GL  146 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-T-TTT------TTTGGGGSSEEEEEE--HHHHHHHHHHHH------TS
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcc-hhh------hhhHhhhhceEEEEECCHHHHHHHHHhhC------CC
Confidence                 11111    12222222 2245666642 111      01112236899999999999999999984      45


Q ss_pred             chHHHHHHH
Q 030176          154 SWGVFCLFI  162 (182)
Q Consensus       154 ~~~~~~~~~  162 (182)
                      +.+++...+
T Consensus       147 ~~~~~~~ri  155 (180)
T PF01121_consen  147 SEEEAEARI  155 (180)
T ss_dssp             THHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            566666655

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.29  E-value=2.4e-10  Score=84.47  Aligned_cols=111  Identities=16%  Similarity=0.278  Sum_probs=67.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  100 (182)
                      ...|+|.|++||||||+++.|++.+++.+++.|..+....+.  .....++.   .+.....+...+.+......  . .
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~--~i~~~~~~---~g~~~fr~~e~~~l~~l~~~--~-~   75 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA--DIGWVFDV---EGEEGFRDREEKVINELTEK--Q-G   75 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCc--CHhHHHHH---hCHHHHHHHHHHHHHHHHhC--C-C
Confidence            457999999999999999999999999999998766554432  22222211   11111112223344443322  2 2


Q ss_pred             EEEe-CC--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176          101 FLID-GF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus       101 ~ild-g~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      +++. |.  +.....+..+..     .+.+|||+.|.+.+++|+..+
T Consensus        76 ~vi~~ggg~v~~~~~~~~l~~-----~~~vv~L~~~~e~~~~Ri~~~  117 (172)
T PRK05057         76 IVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRD  117 (172)
T ss_pred             EEEEcCCchhCCHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCC
Confidence            3343 22  222333333322     358999999999999999754

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.28  E-value=1.5e-10  Score=86.94  Aligned_cols=118  Identities=15%  Similarity=0.212  Sum_probs=64.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCChhhHHHHHHHHcCC--CCCHH-----------
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPSE-----------   83 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~---~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------   83 (182)
                      ++++|+|.|++||||||+++.|++.++.   .++...      .......+..+.+++....  .....           
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~   75 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR------EPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRH   75 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999842   222110      0000112222222211111  11110           


Q ss_pred             -HHHHHHHHHHHhcCCCcEEEeCCCCC------------HHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHHhhh
Q 030176           84 -VTIKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        84 -~~~~~l~~~l~~~~~~~~ildg~~~~------------~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                       ...+.+...+  ..+..+|.|.+...            ......+...+.. .||++|||++|.+.+++|+..|.
T Consensus        76 ~~~~~~i~~~l--~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~  149 (195)
T TIGR00041        76 EHLEDKIKPAL--AEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG  149 (195)
T ss_pred             HHHHHHHHHHH--hCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence             1111122222  23567778864221            1122233333332 39999999999999999999884

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.28  E-value=1.4e-10  Score=87.79  Aligned_cols=50  Identities=22%  Similarity=0.306  Sum_probs=40.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQN   72 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~   72 (182)
                      .+|+|+|++||||||+++.|+. +|+.+++.|++.++....+......+.+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~   51 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAE   51 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHH
Confidence            4799999999999999999976 8999999999988888766544333333

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.27  E-value=1.8e-10  Score=86.14  Aligned_cols=118  Identities=19%  Similarity=0.335  Sum_probs=64.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCC---CCCHHH-------HHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEV-------TIKL   88 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~   88 (182)
                      ++|+|.|++||||||+++.|++.+   |+.++.....      .....+..++.++....   ..+...       ....
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP------GGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC------CCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            479999999999999999999988   5544332110      00011222222222211   011000       0011


Q ss_pred             HHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           89 LQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        89 l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+.+..  ..+..+|.|.++..            ......+....  ...|+++|||++|.+++.+|+.+|.
T Consensus        75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  147 (200)
T cd01672          75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARG  147 (200)
T ss_pred             HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            1111111  24567888865422            12222332222  2368999999999999999999884

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK13974 thymidylate kinase; Provisional

Probab=99.26  E-value=6.8e-11  Score=90.23  Aligned_cols=125  Identities=25%  Similarity=0.358  Sum_probs=71.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHHHcCChhhHHHHHHHHcC--CCCCHHHHHHHH------
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTIKLL------   89 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~--~~di~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l------   89 (182)
                      ++.+|+|.|++||||||+++.|++.+.-....  ..+++..........|+.+++++...  ...++.....++      
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~   81 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA   81 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999887421100  00111111122345677777766532  122333322222      


Q ss_pred             ---HHHHHh--cCCCcEEEeCC----------CCC--HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhh
Q 030176           90 ---QKAMEE--SGNDKFLIDGF----------PRN--EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        90 ---~~~l~~--~~~~~~ildg~----------~~~--~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                         ......  ..+..+|.|.|          ++.  ......+....  +..||++|+|++|++++.+|+..|
T Consensus        82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R  155 (212)
T PRK13974         82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR  155 (212)
T ss_pred             HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc
Confidence               111111  23445555544          432  22233443322  346999999999999999999876

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.26  E-value=1.4e-12  Score=105.47  Aligned_cols=126  Identities=24%  Similarity=0.369  Sum_probs=83.2

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH------cCChhhHHHHHH-----------HH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK------SGSENGTMIQNM-----------IK   75 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~------~~~~~~~~~~~~-----------~~   75 (182)
                      +-++++.++.++.|.||+||||||+.++||   |+..++.|.|......      .+...++.+|++           +.
T Consensus        23 ~isl~i~~Gef~~lLGPSGcGKTTlLR~IA---Gfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVa   99 (352)
T COG3842          23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIA---GFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVA   99 (352)
T ss_pred             cceeeecCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhh
Confidence            346678999999999999999999999999   9998888866332222      122334444443           11


Q ss_pred             cC----CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           76 EG----KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        76 ~~----~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      .+    ...+++.+.+.+.+++.......+ .+.    ....++|+..+++++..+|.+++ ||+|...+-..++.
T Consensus       100 fGLk~~~~~~~~~i~~rv~e~L~lV~L~~~-~~R~p~qLSGGQqQRVALARAL~~~P~vLL-LDEPlSaLD~kLR~  173 (352)
T COG3842         100 FGLKVRKKLKKAEIKARVEEALELVGLEGF-ADRKPHQLSGGQQQRVALARALVPEPKVLL-LDEPLSALDAKLRE  173 (352)
T ss_pred             hhhhhcCCCCHHHHHHHHHHHHHHcCchhh-hhhChhhhChHHHHHHHHHHHhhcCcchhh-hcCcccchhHHHHH
Confidence            11    223344455555555544221111 222    33569999999999999998776 99999777766654

>PLN02422 dephospho-CoA kinase

Probab=99.26  E-value=2.6e-10  Score=87.81  Aligned_cols=127  Identities=21%  Similarity=0.165  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-----HHcCCCCCHHHH-----------
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-----IKEGKIVPSEVT-----------   85 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----------   85 (182)
                      .+|+|+|++||||||+++.|+ ++|+.+++.|++.++....+...-..+.+.     +.....++...+           
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR   80 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            379999999999999999997 689999999999988887654321111111     111111221111           


Q ss_pred             -------HHHHHHHHH----h---cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176           86 -------IKLLQKAME----E---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKL  151 (182)
Q Consensus        86 -------~~~l~~~l~----~---~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~  151 (182)
                             ...+...+.    .   .....+++|- |..      +...+....|.+|++++|.+.+++|+.+|+      
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-pLL------~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~------  147 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-PLL------FETKMDKWTKPVVVVWVDPETQLERLMARD------  147 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-hhh------hhcchhhhCCEEEEEECCHHHHHHHHHHcC------
Confidence                   111111111    1   1123444443 221      111122236899999999999999999983      


Q ss_pred             CcchHHHHHHH
Q 030176          152 PFSWGVFCLFI  162 (182)
Q Consensus       152 ~~~~~~~~~~~  162 (182)
                      ..+.+++...+
T Consensus       148 g~s~eea~~Ri  158 (232)
T PLN02422        148 GLSEEQARNRI  158 (232)
T ss_pred             CCCHHHHHHHH
Confidence            34556666665

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.25  E-value=1.5e-10  Score=88.06  Aligned_cols=42  Identities=33%  Similarity=0.468  Sum_probs=35.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS   62 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~   62 (182)
                      .+.+|+|+|++||||||+++.|.+ +|+..++.|.+.++....
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~   45 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVT   45 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCC
Confidence            457899999999999999999875 899999999887766543

>TIGR00017 cmk cytidylate kinase

Probab=99.25  E-value=2.3e-10  Score=87.55  Aligned_cols=38  Identities=32%  Similarity=0.595  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~   59 (182)
                      .+|+|+||+||||||+++.|++++++.+++.|++++..
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            58999999999999999999999999999999987655

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.25  E-value=2e-10  Score=98.82  Aligned_cols=117  Identities=17%  Similarity=0.214  Sum_probs=78.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-HHcCCCCCHHHHHHHHHHHHHhcC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-IKEGKIVPSEVTIKLLQKAMEESG   97 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~   97 (182)
                      .+...|+|+|.+||||||+++.||+.+|+.++|.|+.+.+..+      +++.+. ...|+....+...+.+.+.+... 
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g------~si~eif~~~Ge~~FR~~E~~~l~~~~~~~-   76 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG------MSIPSYFEEYGEPAFREVEADVVADMLEDF-   76 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC------cCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            3456799999999999999999999999999999998777653      233332 23344444555666666655432 


Q ss_pred             CCcEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           98 NDKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        98 ~~~~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                       ..+|--|  .+...+.+..+...+... .++|||++|.+.+.+|+..+
T Consensus        77 -~~VIs~GGG~v~~~~n~~~L~~~~~~~-g~vv~L~~~~~~l~~Rl~~~  123 (542)
T PRK14021         77 -DGIFSLGGGAPMTPSTQHALASYIAHG-GRVVYLDADPKEAMERANRG  123 (542)
T ss_pred             -CeEEECCCchhCCHHHHHHHHHHHhcC-CEEEEEECCHHHHHHHHhCC
Confidence             2333222  334444444443333322 37999999999999999743

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.25  E-value=1.1e-10  Score=87.56  Aligned_cols=117  Identities=21%  Similarity=0.346  Sum_probs=62.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH--H--HHHH---HHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS--E--VTIK---LLQKAMEE   95 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~---~l~~~l~~   95 (182)
                      +|+|.|++||||||+++.|++.+++..+....-      .....+..+..++........  +  ....   .+.+....
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~------~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE------PDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcccccccc------ccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            489999999999999999999888654433210      000000001111111000000  0  0011   11111110


Q ss_pred             -cCCCcEEEeCCCCCHH---------------HHH---HHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           96 -SGNDKFLIDGFPRNEE---------------NRA---AFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        96 -~~~~~~ildg~~~~~~---------------q~~---~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                       ..+..+|.|.++....               +..   .+...+   ...||++|||++|++++.+|+.+|+
T Consensus        75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~  146 (193)
T cd01673          75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG  146 (193)
T ss_pred             cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence             1457888998654310               111   111112   2369999999999999999999884

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.24  E-value=2e-11  Score=91.25  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=32.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAE   59 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~   59 (182)
                      +|+|+|++||||||+|+.|++.+ +...++.|+++...
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~   38 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE   38 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence            58999999999999999999998 57888888876643

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=99.24  E-value=6.6e-12  Score=87.59  Aligned_cols=107  Identities=28%  Similarity=0.396  Sum_probs=56.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC-ChhhHHHHHHHHcCCCCCHHHHHHH---HHHHHH-hcCC
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SENGTMIQNMIKEGKIVPSEVTIKL---LQKAME-ESGN   98 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~-~~~~   98 (182)
                      |+|+|++||||||+++.|++.++       +.+.+..... ...................+....+   +.+... ....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG   73 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence            78999999999999999999982       2222222211 1111100000111223333332222   222222 2456


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEE-EEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFV-LFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~v-I~ld~~~~~l~~R~~~R~  145 (182)
                      ..+|+|++......        ....... |+|++|.+++.+|+.+|.
T Consensus        74 ~~~iid~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~R~  113 (129)
T PF13238_consen   74 RNIIIDGILSNLEL--------ERLFDIKFIFLDCSPEELRKRLKKRG  113 (129)
T ss_dssp             SCEEEEESSEEECE--------TTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred             CcEEEecccchhcc--------cccceeeEEEEECCHHHHHHHHHhCC
Confidence            77889986432110        0011223 889999999999999883

...

>COG0645 Predicted kinase [General function prediction only]

Probab=99.24  E-value=9.1e-10  Score=79.92  Aligned_cols=116  Identities=22%  Similarity=0.279  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH--HHHHHHH----HHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS--EVTIKLL----QKAMEE   95 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l----~~~l~~   95 (182)
                      .++++.|.||+||||+++.|++.+|...+..|++.+.... .+.....     ..+...+.  +.+...+    ...+  
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g-~p~~~r~-----~~g~ys~~~~~~vy~~l~~~A~l~l--   73 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG-VPEETRG-----PAGLYSPAATAAVYDELLGRAELLL--   73 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC-CcccccC-----CCCCCcHHHHHHHHHHHHHHHHHHH--
Confidence            5789999999999999999999999999999777666554 1111000     00111111  1112222    2222  


Q ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHhCCC--CcEEEEEecCHHHHHHHHHhhh
Q 030176           96 SGNDKFLIDGFPRNEENRAAFEAVTKIE--PEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~--~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+..+|+|.-.....++...+......  +..+|++++|.+++..|+.+|.
T Consensus        74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~  125 (170)
T COG0645          74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARK  125 (170)
T ss_pred             hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhC
Confidence            3467788998767777776665554222  4567889999999999999995

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.24  E-value=5.4e-11  Score=87.20  Aligned_cols=124  Identities=11%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             EcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH-HHHHHHHHHHHHhcCCCcEEEeC
Q 030176           27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEESGNDKFLIDG  105 (182)
Q Consensus        27 ~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ildg  105 (182)
                      +|++||||||+++.|++.+|..+++.+.+...........+..+++.    ...+. ........... ...+..+|+-.
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~viv~s   75 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD----DRKPWLQALNDAAFAMQ-RTNKVSLIVCS   75 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh----hHHHHHHHHHHHHHHHH-HcCCceEEEEe
Confidence            59999999999999999999988888654321111110011100000    00000 01111111111 12233444422


Q ss_pred             CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176          106 FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI  162 (182)
Q Consensus       106 ~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~  162 (182)
                      + ....++..+.. .+ .+..+||+++|.+++.+|+.+|..    +..+.+.+..++
T Consensus        76 ~-~~~~~r~~~~~-~~-~~~~~v~l~a~~~~l~~Rl~~R~~----~~a~~~vl~~Q~  125 (163)
T PRK11545         76 A-LKKHYRDLLRE-GN-PNLSFIYLKGDFDVIESRLKARKG----HFFKTQMLVTQF  125 (163)
T ss_pred             c-chHHHHHHHHc-cC-CCEEEEEEECCHHHHHHHHHhccC----CCCCHHHHHHHH
Confidence            2 33444443433 32 355789999999999999999953    223555555544

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.23  E-value=1e-10  Score=88.22  Aligned_cols=126  Identities=17%  Similarity=0.133  Sum_probs=73.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-----HHcCCCCCHH--------------
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-----IKEGKIVPSE--------------   83 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------   83 (182)
                      +|+|+|++||||||+++.|+ .+|+..++.|++.++....+...-..+.+.     +.....++..              
T Consensus         1 ~i~itG~~gsGKst~~~~l~-~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILE-ELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHH-HCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            48999999999999999885 579999999999888776554322222211     1111111111              


Q ss_pred             ----HHHHHH----HHHHHh-cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcc
Q 030176           84 ----VTIKLL----QKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFS  154 (182)
Q Consensus        84 ----~~~~~l----~~~l~~-~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~  154 (182)
                          ++...+    .+.+.. .....+++|. |...+      ..+....|.+|++++|.+...+|+.+|+      ..+
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~-pLL~E------~~~~~~~D~vi~V~a~~e~r~~RL~~R~------g~s  146 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV-PLLFE------TDAYTLCDATVTVDSDPEESILRTISRD------GMK  146 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe-eeeeE------cCchhhCCEEEEEECCHHHHHHHHHHcC------CCC
Confidence                111111    111111 1223444443 22111      0111135899999999999999999883      345


Q ss_pred             hHHHHHHH
Q 030176          155 WGVFCLFI  162 (182)
Q Consensus       155 ~~~~~~~~  162 (182)
                      .+++...+
T Consensus       147 ~e~a~~ri  154 (196)
T PRK14732        147 KEDVLARI  154 (196)
T ss_pred             HHHHHHHH
Confidence            66666665

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.23  E-value=2.1e-10  Score=84.84  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=64.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH----HHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE----VTIKL   88 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~   88 (182)
                      .++|.+|+|+|++||||||+++.|++.+.     ...++.+. +++.....             +.....+    .....
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~-------------~~~~~~~~~~~~~~~~   69 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHY-------------GYDKQSRIEMALKRAK   69 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCC-------------CCCHHHHHHHHHHHHH
Confidence            35778999999999999999999999885     44555444 33332211             1000111    11112


Q ss_pred             HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        89 l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      +.+.+. ..+..+|+++... ........+... .+.++|||++|.+++.+|..+
T Consensus        70 l~~~l~-~~g~~VI~~~~~~-~~~~~~~~~~~~-~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         70 LAKFLA-DQGMIVIVTTISM-FDEIYAYNRKHL-PNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             HHHHHH-hCCCEEEEEeCCc-HHHHHHHHHhhc-CCeEEEEEeCCHHHHHHhchh
Confidence            222222 2356777887532 222222323232 356889999999999999864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.23  E-value=7.8e-12  Score=95.94  Aligned_cols=120  Identities=23%  Similarity=0.336  Sum_probs=75.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH---cCChhhHHHHHH-----------HHcCC
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---SGSENGTMIQNM-----------IKEGK   78 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~---~~~~~~~~~~~~-----------~~~~~   78 (182)
                      +-+++..++.++.|.||+|||||||.+.+|   |+...+.|.+......   +..+.+..+|++           +.-+-
T Consensus        21 ~i~L~v~~GEfvsilGpSGcGKSTLLriiA---GL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l   97 (248)
T COG1116          21 DINLSVEKGEFVAILGPSGCGKSTLLRLIA---GLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGL   97 (248)
T ss_pred             cceeEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehh
Confidence            345677899999999999999999999999   8887777765443322   223333333221           11110


Q ss_pred             C---CCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           79 I---VPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        79 ~---~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                      .   .+.....+...+.+...+..++ -+.||    ..++|+..+++++..+|++++ +|+|+..|
T Consensus        98 ~~~~~~~~e~~~~a~~~L~~VgL~~~-~~~~P~qLSGGMrQRVaiARAL~~~P~lLL-lDEPFgAL  161 (248)
T COG1116          98 ELRGKSKAEARERAKELLELVGLAGF-EDKYPHQLSGGMRQRVAIARALATRPKLLL-LDEPFGAL  161 (248)
T ss_pred             hccccchHhHHHHHHHHHHHcCCcch-hhcCccccChHHHHHHHHHHHHhcCCCEEE-EcCCcchh
Confidence            0   2222233344444444332222 34454    359999999999999998777 99998433

>PLN02199 shikimate kinase

Probab=99.23  E-value=3e-10  Score=89.80  Aligned_cols=113  Identities=18%  Similarity=0.253  Sum_probs=73.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (182)
                      .++..|+|+|.+||||||+++.|++.+|+.++|.|.++.+... +......+.   ..|+....+...+.+.++...  .
T Consensus       100 l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI~eIf~---~~GE~~FR~~E~e~L~~L~~~--~  173 (303)
T PLN02199        100 LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSVAEIFV---HHGENFFRGKETDALKKLSSR--Y  173 (303)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCHHHHHH---HhCHHHHHHHHHHHHHHHHhc--C
Confidence            4567899999999999999999999999999999998888643 222322222   224334444455555555433  2


Q ss_pred             CcEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           99 DKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        99 ~~~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      ..+|--|  .+....-+..+ .     -.++|||++|.+.+.+|+..
T Consensus       174 ~~VIStGGG~V~~~~n~~~L-~-----~G~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        174 QVVVSTGGGAVIRPINWKYM-H-----KGISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             CEEEECCCcccCCHHHHHHH-h-----CCeEEEEECCHHHHHHHHhh
Confidence            2333222  22233333322 1     13799999999999999985

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.23  E-value=5.4e-10  Score=80.81  Aligned_cols=132  Identities=19%  Similarity=0.174  Sum_probs=81.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SG   97 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~   97 (182)
                      +++++++|.||+||||+++.+.+.+ ++..++.|+++.+........ ..    ...-+.+|.+....+..+...+  ..
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glv-e~----rD~~Rklp~e~Q~~lq~~Aa~rI~~~   78 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLV-EH----RDEMRKLPLENQRELQAEAAKRIAEM   78 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCc-cc----HHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999988 888899999987765532110 00    0111235555544444443332  11


Q ss_pred             CCcEEEeCCC----------CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHH
Q 030176           98 NDKFLIDGFP----------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIM  163 (182)
Q Consensus        98 ~~~~ildg~~----------~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~  163 (182)
                      ...+|+|++.          .....   ..+.  .+||+++.+.++++.+..|..+. ..|..|..+.++..+.+.
T Consensus        79 ~~~iivDtH~~IkTP~GylpgLP~~---Vl~~--l~pd~ivllEaDp~~Il~RR~~D-~~r~Rd~es~e~i~eHqe  148 (189)
T COG2019          79 ALEIIVDTHATIKTPAGYLPGLPSW---VLEE--LNPDVIVLLEADPEEILERRLRD-SRRDRDVESVEEIREHQE  148 (189)
T ss_pred             hhceEEeccceecCCCccCCCCcHH---HHHh--cCCCEEEEEeCCHHHHHHHHhcc-cccccccccHHHHHHHHH
Confidence            1226677542          22221   1122  37999999999998888777654 345555566665555543

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.22  E-value=6.9e-10  Score=94.59  Aligned_cols=103  Identities=22%  Similarity=0.396  Sum_probs=75.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   96 (182)
                      ...++.+|+++|+|||||||+++.+++..|+.+++.|++-.                        .+.....+.+.+.. 
T Consensus       365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~~-  419 (526)
T TIGR01663       365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALDQ-  419 (526)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHhC-
Confidence            34677899999999999999999999999999999976510                        11233445555544 


Q ss_pred             CCCcEEEeCCCCCHHHHHHH---HHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           97 GNDKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l---~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                       +..+|+|.......++..+   ++..+. +-.++++++|.+++++|+..|..
T Consensus       420 -G~sVVIDaTn~~~~~R~~~i~lAk~~gv-~v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       420 -GKRCAIDNTNPDAASRAKFLQCARAAGI-PCRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             -CCcEEEECCCCCHHHHHHHHHHHHHcCC-eEEEEEeCCCHHHHHHHHHhhcc
Confidence             5677888865665555444   444444 44688899999999999999863

Note that the EC number for the kinase function is: 2.7.1.78

>PRK12338 hypothetical protein; Provisional

Probab=99.22  E-value=4.8e-10  Score=89.82  Aligned_cols=126  Identities=18%  Similarity=0.290  Sum_probs=74.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC--C----hhhHHHHHHHH---cCCCC-C-------
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--S----ENGTMIQNMIK---EGKIV-P-------   81 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~--~----~~~~~~~~~~~---~~~~~-~-------   81 (182)
                      .+|.+|+|+|+|||||||+|+.||+.+|+.++..+|.+++....-  .    ....+..++..   ..... +       
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~   81 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA   81 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence            457899999999999999999999999999987788888876631  1    11111111111   11000 1       


Q ss_pred             -----HHHHHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHHhhhc
Q 030176           82 -----SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        82 -----~~~~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                           .+.+...+...+..  ..+..+|++|.-........ ...... ... .+++..+.+..++|+..|..
T Consensus        82 gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~-~~~~~~~~v~-~~vl~~dee~h~~Rf~~R~~  152 (319)
T PRK12338         82 GFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI-EQFEENASIH-FFILSADEEVHKERFVKRAM  152 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh-hhhcccCceE-EEEEECCHHHHHHHHHHhhh
Confidence                 12233333334433  35678999996333322221 111111 222 33366899999999999864

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.22  E-value=1.2e-10  Score=88.61  Aligned_cols=119  Identities=20%  Similarity=0.287  Sum_probs=66.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   95 (182)
                      .++.+|+|+|++|||||||++.|++.++   ...++.|+.+.......  ..............++.+...+.+..+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~   81 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLS--FEERVKTNYDHPDAFDHDLLIEHLKALKAG   81 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCC--HHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence            5678999999999999999999999883   34456655543221100  000000000000112222333333322211


Q ss_pred             ----------------------cCCCcEEEeCCCCCH-HHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           96 ----------------------SGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        96 ----------------------~~~~~~ildg~~~~~-~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                                            .....+|+||..... .....       ..|++||+++|.+.+++|+.+|..
T Consensus        82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~-------~~d~~I~v~~~~~~~~~R~~~Rd~  148 (209)
T PRK05480         82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRD-------LMDIKIFVDTPLDIRLIRRLKRDV  148 (209)
T ss_pred             CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhh-------hhceeEEEeCChhHHHHHHHhhcc
Confidence                                  112356777743321 11111       258899999999999999999863

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.21  E-value=1.8e-10  Score=89.88  Aligned_cols=109  Identities=17%  Similarity=0.318  Sum_probs=65.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC---C--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG---Y--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg---~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   97 (182)
                      +|+|+|+|||||||+++.|++.++   +  .+++. |.++.......   .....       ...+.....+...+..  
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~---~~~e~-------~~~~~~~~~i~~~l~~--   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWK---EKYEE-------FIRDSTLYLIKTALKN--   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhh---HHhHH-------HHHHHHHHHHHHHHhC--
Confidence            489999999999999999998873   3  34444 44443321100   00000       0112233344444433  


Q ss_pred             CCcEEEeCCCCCHHHHHHH---HHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           98 NDKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l---~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +..+|+|+.......+..+   .+..+ .+..+||+++|.+.+++|..+|.
T Consensus        68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~-~~~~~I~l~~p~e~~~~Rn~~R~  117 (249)
T TIGR03574        68 KYSVIVDDTNYYNSMRRDLINIAKEYN-KNYIIIYLKAPLDTLLRRNIERG  117 (249)
T ss_pred             CCeEEEeccchHHHHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHHhCC
Confidence            4568888854433333333   33333 35678999999999999998873

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.21  E-value=4.8e-11  Score=91.03  Aligned_cols=116  Identities=22%  Similarity=0.395  Sum_probs=77.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------------HHHHcCChhhHHHHH-----
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------------AEIKSGSENGTMIQN-----   72 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------------~~~~~~~~~~~~~~~-----   72 (182)
                      +++.+++.+.+|.||+||||||+.+.+.   |....+.|+++-                 +......+.+-.+..     
T Consensus        28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~---Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~e  104 (263)
T COG1127          28 DLDVPRGEILAILGGSGSGKSTLLRLIL---GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFE  104 (263)
T ss_pred             eeeecCCcEEEEECCCCcCHHHHHHHHh---ccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhH
Confidence            5677999999999999999999999998   544444443311                 111111111111111     


Q ss_pred             ----HHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 ----MIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPR----NEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~----~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                          .+.+...++++.+.++...-+...+..+.+.+-||.    .+..+..+++++..+|++++ +|+|+
T Consensus       105 NVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~-~DEPt  173 (263)
T COG1127         105 NVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF-LDEPT  173 (263)
T ss_pred             hhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE-ecCCC
Confidence                133345577777777777777665555555666765    48999999999999998766 99996

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.21  E-value=1.9e-10  Score=83.31  Aligned_cols=112  Identities=20%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l---g--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   94 (182)
                      +|.+|.|+|.+||||||+|+.|.++|   |  ...++. |.++..+........  ++-..+     -. ....+...+.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~--~dR~e~-----~r-r~~~~A~ll~   71 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSK--EDREEN-----IR-RIAEVAKLLA   71 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSH--HHHHHH-----HH-HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCH--HHHHHH-----HH-HHHHHHHHHH
Confidence            47899999999999999999999887   3  334555 444544332211111  000000     00 1111222222


Q ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176           95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus        95 ~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~  141 (182)
                       ..+..+|+.........++..+........+.||++||.+++.+|-
T Consensus        72 -~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   72 -DQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             -HTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred             -hCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence             3456777777655566777777766544568999999999999994

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.2e-10  Score=93.93  Aligned_cols=124  Identities=21%  Similarity=0.314  Sum_probs=80.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhHHHHHH-----------HHcC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGTMIQNM-----------IKEG   77 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~~~~~~-----------~~~~   77 (182)
                      ++++..+.+++|.||+||||||+++.+|   |+..++.|++.......      ....++.+|++           +..+
T Consensus        23 ~l~i~~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~   99 (338)
T COG3839          23 NLDIEDGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG   99 (338)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhh
Confidence            5567889999999999999999999999   99888888874433221      11222222221           1111


Q ss_pred             ---CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           78 ---KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        78 ---~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                         ...+.+.+.+.+.+.+..-.-.. +++..|    ..++|+.++.+++..+|.+++ +|+|...|-.+++.
T Consensus       100 Lk~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L-~DEPlSnLDa~lR~  170 (338)
T COG3839         100 LKLRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKVFL-LDEPLSNLDAKLRV  170 (338)
T ss_pred             hhhCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHHHHhcCCCEEE-ecCchhHhhHHHHH
Confidence               12234444444444443322122 244443    459999999999988998655 99999888777653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.20  E-value=2.7e-11  Score=92.51  Aligned_cols=121  Identities=16%  Similarity=0.304  Sum_probs=75.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC--------------------------Chhh
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--------------------------SENG   67 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~--------------------------~~~~   67 (182)
                      -++++.++..++|.|++|||||||++.|+   |+...+.|++..+.....                          ...+
T Consensus        26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~---Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~  102 (252)
T COG1124          26 VSLEIERGETLGIVGESGSGKSTLARLLA---GLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVG  102 (252)
T ss_pred             eeEEecCCCEEEEEcCCCCCHHHHHHHHh---cccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHH
Confidence            36678999999999999999999999999   887777777654442110                          0112


Q ss_pred             HHHHHHHHcCC-CCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176           68 TMIQNMIKEGK-IVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (182)
Q Consensus        68 ~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~  142 (182)
                      ..+.+.+..+. ....+.    +.+.+....-..-+++.+|    ..+.|+.++++++..+|.++| +|+|+..|--.+.
T Consensus       103 ~~l~Epl~~~~~~~~~~~----i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLI-lDEptSaLD~siQ  177 (252)
T COG1124         103 RILSEPLRPHGLSKSQQR----IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLI-LDEPTSALDVSVQ  177 (252)
T ss_pred             HHHhhhhccCCccHHHHH----HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEE-ecCchhhhcHHHH
Confidence            22222222111 111122    2333333222223355544    469999999999999999888 9999966554443

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.20  E-value=5.8e-10  Score=85.49  Aligned_cols=28  Identities=32%  Similarity=0.502  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      +|+|.|..||||||+++.|++.++...+
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~   28 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYF   28 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            4899999999999999999999986544

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PLN02924 thymidylate kinase

Probab=99.20  E-value=5.8e-10  Score=85.54  Aligned_cols=142  Identities=20%  Similarity=0.250  Sum_probs=79.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH-----------HH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK   87 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~   87 (182)
                      +++.+|+|.|+.||||||+++.|++.+....... .+.+ .-......|..+++++...........           ..
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~-ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~   91 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWR-FPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS   91 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeee-CCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999985322211 0011 111123455555555544332222111           01


Q ss_pred             HHHHHHHhcCCCcEEEeCCCCC-HHH-------HHHHHHH--hCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHH
Q 030176           88 LLQKAMEESGNDKFLIDGFPRN-EEN-------RAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGV  157 (182)
Q Consensus        88 ~l~~~l~~~~~~~~ildg~~~~-~~q-------~~~l~~~--~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~  157 (182)
                      .+...+  ..+..+|.|.|..+ ..+       .+++...  ....||++|+||+|++++.+|...+     .+.....+
T Consensus        92 ~I~pal--~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~-----~~~~E~~~  164 (220)
T PLN02924         92 LMERKL--KSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYG-----GERYEKLE  164 (220)
T ss_pred             HHHHHH--HCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-----ccccccHH
Confidence            112222  24678889987543 111       1122211  1236999999999999999996432     11222346


Q ss_pred             HHHHHHHhhhhh
Q 030176          158 FCLFIMLSFSSC  169 (182)
Q Consensus       158 ~~~~~~~~~~~~  169 (182)
                      |.+-++..+-..
T Consensus       165 ~~~rv~~~Y~~l  176 (220)
T PLN02924        165 FQKKVAKRFQTL  176 (220)
T ss_pred             HHHHHHHHHHHH
Confidence            666666665443

>TIGR00235 udk uridine kinase

Probab=99.20  E-value=8.4e-11  Score=89.32  Aligned_cols=117  Identities=17%  Similarity=0.213  Sum_probs=66.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCC----CCHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----VPSEVTIKLL   89 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l   89 (182)
                      .++++.+|+|+|++||||||+++.|+..++   ...+..++.+.......  .    .........    ++.+...+.+
T Consensus         2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~l~~~l   75 (207)
T TIGR00235         2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLE--M----AERKKTNFDHPDAFDNDLLYEHL   75 (207)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCC--H----HHhcCCCCCCccHhHHHHHHHHH
Confidence            467889999999999999999999998875   34455554432111000  0    000000000    1112222222


Q ss_pred             HHHHHh----------------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           90 QKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        90 ~~~l~~----------------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+...                      .....+|+||.+.....  .+.    ...|++||+++|.+.++.|+.+|.
T Consensus        76 ~~l~~g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~----~~~d~~I~v~~~~~~~l~R~~~R~  147 (207)
T TIGR00235        76 KNLKNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR----DLMDLKIFVDTPLDIRLIRRIERD  147 (207)
T ss_pred             HHHHCCCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH----HhCCEEEEEECChhHHHHHHHHHH
Confidence            222110                      12356777876443211  121    135799999999999999999886

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.19  E-value=5.5e-10  Score=86.72  Aligned_cols=43  Identities=19%  Similarity=0.185  Sum_probs=38.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS   64 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~   64 (182)
                      .+|+|||.+||||||+++.|.+.+|++.+|.|.+.++...++.
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~   44 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNM   44 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCCh
Confidence            4799999999999999999988899999999999998877654

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.19  E-value=5.5e-10  Score=84.28  Aligned_cols=120  Identities=17%  Similarity=0.256  Sum_probs=65.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHc-CCCCCH-HHH-------HH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPS-EVT-------IK   87 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-------~~   87 (182)
                      ++++|+|.|+.||||||+++.|++.++   ...+....      ......+..+...+.. ...... ...       .+
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   75 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTRE------PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ   75 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeC------CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999998873   22111100      0011123333333331 111111 111       11


Q ss_pred             HHHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           88 LLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        88 ~l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+.+.+..  ..+..+|.|.++..            ......+...+  ...||++|+|++|++.+.+|+.+|.
T Consensus        76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~  149 (205)
T PRK00698         76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARG  149 (205)
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            11111111  23567888864322            11112222222  1359999999999999999999985

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.19  E-value=2.6e-10  Score=83.20  Aligned_cols=117  Identities=22%  Similarity=0.281  Sum_probs=70.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh---CC-cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHH
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK   91 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l---g~-~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   91 (182)
                      ....++.+|.+||.+||||||+|.+|.++|   |+ .++-.||-+++.........+  ++-.++.     . ....+..
T Consensus        18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~--edR~eni-----R-RvaevAk   89 (197)
T COG0529          18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSR--EDRIENI-----R-RVAEVAK   89 (197)
T ss_pred             HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCCh--HHHHHHH-----H-HHHHHHH
Confidence            345778899999999999999999999877   43 344456777777654322211  1111110     1 1122223


Q ss_pred             HHHhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176           92 AMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (182)
Q Consensus        92 ~l~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~  142 (182)
                      ++..  ...+++-.+-+ -.+.+...+..++....+-||+++|.+++.+|=-
T Consensus        90 ll~d--aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDp  139 (197)
T COG0529          90 LLAD--AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDP  139 (197)
T ss_pred             HHHH--CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCc
Confidence            3322  23344444433 3445555555566567789999999999999843

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.18  E-value=2.9e-10  Score=86.27  Aligned_cols=121  Identities=19%  Similarity=0.338  Sum_probs=72.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcC-CCCCHH-HH-------HH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIVPSE-VT-------IK   87 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-------~~   87 (182)
                      ++++|+|.|+-||||||+++.|++.|   |+.++-.      ........+..+++.+.++ ...... ..       .+
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t------rEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~   75 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT------REPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ   75 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999877   3322211      1122344556666555543 122211 11       11


Q ss_pred             HHHHHHHh--cCCCcEEEeCCCCC-HHH-----------HHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           88 LLQKAMEE--SGNDKFLIDGFPRN-EEN-----------RAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        88 ~l~~~l~~--~~~~~~ildg~~~~-~~q-----------~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      .+.+.+..  ..+..+|.|.|..+ ..+           ...+.+..  ...||+++|||.|+++..+|+.+|..
T Consensus        76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~  150 (208)
T COG0125          76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE  150 (208)
T ss_pred             HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            12222222  24678888987433 111           11221222  23799999999999999999999853

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.17  E-value=1.8e-10  Score=88.72  Aligned_cols=40  Identities=35%  Similarity=0.586  Sum_probs=36.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~   59 (182)
                      ...+|+|.|++||||||+++.|++++|+.+++.|++++..
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~   42 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV   42 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence            3578999999999999999999999999999999987763

>PRK06696 uridine kinase; Validated

Probab=99.16  E-value=2.8e-10  Score=87.50  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh---CCcE--ecHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTH--LSAGDLLR   57 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~--~~~~di~~   57 (182)
                      ...+.+|+|+|++||||||+|+.|++.+   |..+  +..|+++.
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            3567899999999999999999999998   5444  44666653

>PRK07667 uridine kinase; Provisional

Probab=99.16  E-value=3.2e-10  Score=85.32  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=32.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAE   59 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~   59 (182)
                      +.+.+|+|+|++||||||+++.|++.++     ...++.++++...
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~   60 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER   60 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence            4458999999999999999999998873     3477777765543

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.16  E-value=7.7e-10  Score=91.76  Aligned_cols=116  Identities=19%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-----HHcCCCCCHHH------------
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-----IKEGKIVPSEV------------   84 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------   84 (182)
                      .+|+|+|++||||||+++.|++ +|+.+++.|.+..+....+...-..+.+.     +.....++...            
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            3699999999999999999976 89999999999888776543211111111     11111111111            


Q ss_pred             ----------HHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           85 ----------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        85 ----------~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                                +...+.+.+....+..+++.+.|...+.      .+....|.+|++++|.+.+.+|+.+|
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~------~~~~~~D~iI~V~ap~e~ri~Rl~~r  144 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES------GMAPLFHLVVVVDADVEVRVRRLVEQ  144 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC------CchhhCCEEEEEECCHHHHHHHHHhc
Confidence                      1111222222223344555554332111      11113589999999999999999885

>PTZ00301 uridine kinase; Provisional

Probab=99.15  E-value=1.4e-10  Score=88.32  Aligned_cols=115  Identities=17%  Similarity=0.231  Sum_probs=64.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh----C---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH----HHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF----G---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS----EVTIKL   88 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l----g---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   88 (182)
                      +-.+|+|+|+|||||||+|+.|++.+    +   ...+..|++++.....  ....  ..  ......|+    +...+.
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~--~~~~--~~--~~~~d~p~a~D~~~l~~~   75 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNI--PESE--RA--YTNYDHPKSLEHDLLTTH   75 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccC--CHHH--hc--CCCCCChhhhCHHHHHHH
Confidence            34789999999999999999998776    2   2244555554432110  0000  00  00112222    222222


Q ss_pred             HHHHHHh----------------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           89 LQKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        89 l~~~l~~----------------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      +..+...                      .....+|+||+.....  ..+...    .|+.||+++|.++++.|..+|..
T Consensus        76 l~~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~l----~D~~ifvd~~~d~~~~Rr~~Rd~  149 (210)
T PTZ00301         76 LRELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRNE----MDCLIFVDTPLDICLIRRAKRDM  149 (210)
T ss_pred             HHHHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHHh----CCEEEEEeCChhHHHHHHHhhhH
Confidence            2222110                      1235677788533111  123222    47899999999999999999984

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.15  E-value=1.1e-09  Score=82.57  Aligned_cols=109  Identities=18%  Similarity=0.175  Sum_probs=65.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHH---
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL---   89 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l-----g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---   89 (182)
                      .++|.+|+|+|++||||||+++.|++.+     +..+++.+++.......   .+..        . -........+   
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~---~~~~--------~-~~~~~~~~~l~~~   88 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD---LGFS--------D-ADRKENIRRVGEV   88 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc---CCcC--------c-ccHHHHHHHHHHH
Confidence            4678999999999999999999999876     24556655544222110   0000        0 0001111112   


Q ss_pred             HHHHHhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHH
Q 030176           90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERR  140 (182)
Q Consensus        90 ~~~l~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R  140 (182)
                      ...+. ..+..+ +..+.. ...++..+...+.....++|||++|.+.+.+|
T Consensus        89 a~~~~-~~G~~V-I~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         89 AKLMV-DAGLVV-LTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR  138 (198)
T ss_pred             HHHHh-hCCCEE-EEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence            11121 224444 444443 46777777777654444589999999999999

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.14  E-value=2.2e-09  Score=79.99  Aligned_cols=110  Identities=17%  Similarity=0.231  Sum_probs=68.0

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH---HHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV---TIKL   88 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l---g--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   88 (182)
                      ...++.+++|+|++||||||+++.|++.+   |  ...++.+++ +......              ..+..+.   ....
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~-r~~l~~~--------------~~~~~~~~~~~~~~   78 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV-RHGLNKD--------------LGFSEEDRKENIRR   78 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH-Hhhhccc--------------cCCCHHHHHHHHHH
Confidence            34678999999999999999999999887   2  344555443 3322211              1111111   1111


Q ss_pred             HHHH--HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176           89 LQKA--MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus        89 l~~~--l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~  141 (182)
                      +...  .....+..+|+|.......++..+.......+.++||+++|.+.+.+|-
T Consensus        79 ~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~  133 (184)
T TIGR00455        79 IGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRD  133 (184)
T ss_pred             HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhC
Confidence            1111  1123467788887555566666666555444567899999999999993

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.14  E-value=9.4e-10  Score=82.20  Aligned_cols=117  Identities=14%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----cCChhhHHHHHHHHcCCCCCHHHH--------HH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----SGSENGTMIQNMIKEGKIVPSEVT--------IK   87 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--------~~   87 (182)
                      +.+++|+||+|||||||++.|+..++..++..+..+.....     .-...+..+....+.+. +...+.        ..
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~yg~~~   80 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNL-FALSWHANGLYYGVGI   80 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCc-hhhHHHHhCCccCCcH
Confidence            46899999999999999999998776544443322111100     00001111111111221 100000        01


Q ss_pred             HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        88 ~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      .+.+.+..  +..+|++|-   ......+.+.+. .+-.+||+++|.+++.+|+.+|
T Consensus        81 ~~~~~l~~--g~~VI~~G~---~~~~~~~~~~~~-~~~~vi~l~~s~e~l~~RL~~R  131 (186)
T PRK10078         81 EIDLWLHA--GFDVLVNGS---RAHLPQARARYQ-SALLPVCLQVSPEILRQRLENR  131 (186)
T ss_pred             HHHHHHhC--CCEEEEeCh---HHHHHHHHHHcC-CCEEEEEEeCCHHHHHHHHHHh
Confidence            13333332  455667654   222334444443 3446889999999999999987

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.13  E-value=7.6e-11  Score=85.64  Aligned_cols=116  Identities=16%  Similarity=0.238  Sum_probs=70.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC------------------ChhhHHHHH---
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG------------------SENGTMIQN---   72 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~------------------~~~~~~~~~---   72 (182)
                      .++...++..|+|+||+||||||+.+.++   .+...+.|.++++.....                  .-.|.++.+   
T Consensus        22 isl~v~~Ge~iaitGPSG~GKStllk~va---~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNli   98 (223)
T COG4619          22 ISLSVRAGEFIAITGPSGCGKSTLLKIVA---SLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLI   98 (223)
T ss_pred             eeeeecCCceEEEeCCCCccHHHHHHHHH---hccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccc
Confidence            35567889999999999999999999998   444455544433322211                  112222222   


Q ss_pred             --HHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           73 --MIKEGKIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        73 --~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                        +..+++........+++......    ..+++    ......+|+..+.+.+...|++++ ||+++..+
T Consensus        99 fP~~~r~rr~dr~aa~~llar~~l~----~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILL-LDE~TsAL  164 (223)
T COG4619          99 FPWQIRNRRPDRAAALDLLARFALP----DSILTKNITELSGGEKQRIALIRNLQFMPKILL-LDEITSAL  164 (223)
T ss_pred             cchHHhccCCChHHHHHHHHHcCCc----hhhhcchhhhccchHHHHHHHHHHhhcCCceEE-ecCchhhc
Confidence              12222223334444444443222    22333    345679999999999988898777 99987443

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.13  E-value=1.1e-09  Score=79.84  Aligned_cols=104  Identities=23%  Similarity=0.387  Sum_probs=65.7

Q ss_pred             CCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCcEEEeC--C
Q 030176           30 PGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDKFLIDG--F  106 (182)
Q Consensus        30 ~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~ildg--~  106 (182)
                      +||||||+++.||+.++++++|.|+.+.+..+      +++.+++. .|.....+...+.+.+.+...  ..+|.-|  .
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~~~--~~VIa~GGG~   72 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLKEN--NCVIACGGGI   72 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEEEE-TTG
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhccC--cEEEeCCCCC
Confidence            79999999999999999999999999877654      22222222 122222334445555554332  3333222  4


Q ss_pred             CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176          107 PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus       107 ~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      +...+.+..+..     ...+|||+.|.+.+.+|+..+..
T Consensus        73 ~~~~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~~~  107 (158)
T PF01202_consen   73 VLKEENRELLKE-----NGLVIYLDADPEELAERLRARDN  107 (158)
T ss_dssp             GGSHHHHHHHHH-----HSEEEEEE--HHHHHHHHHHHCT
T ss_pred             cCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCC
Confidence            455555555542     23799999999999999987754

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.13  E-value=1.4e-10  Score=91.33  Aligned_cols=126  Identities=21%  Similarity=0.305  Sum_probs=77.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH------H---cCChhhHHHHHH----------
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI------K---SGSENGTMIQNM----------   73 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~------~---~~~~~~~~~~~~----------   73 (182)
                      +-+++++.+.++++.||+||||||+.+++|   |+...+.|.|.....      .   .....|..+|++          
T Consensus        20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA---GLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~   96 (345)
T COG1118          20 DISLDIKSGELVALLGPSGAGKSTLLRIIA---GLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVAD   96 (345)
T ss_pred             cceeeecCCcEEEEECCCCCcHHHHHHHHh---CcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHh
Confidence            456678999999999999999999999999   776666655422111      1   111222222222          


Q ss_pred             -HHcCC----C-CCHHHHHHHHHHHHHhcCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           74 -IKEGK----I-VPSEVTIKLLQKAMEESGNDKFLIDGFPR----NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        74 -~~~~~----~-~~~~~~~~~l~~~l~~~~~~~~ildg~~~----~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                       +..|.    . .+...+...+.+++.--...+ +-+.||.    .+.|+..+++++..+|.+++ ||+|...+-..+++
T Consensus        97 NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQRVALARALA~eP~vLL-LDEPf~ALDa~vr~  174 (345)
T COG1118          97 NIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPFGALDAKVRK  174 (345)
T ss_pred             hhhhcccccccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHHHHHHHHhhcCCCeEe-ecCCchhhhHHHHH
Confidence             11121    1 122333344444443321111 2445554    49999999999999998777 99999776655543

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.13  E-value=2.5e-09  Score=77.23  Aligned_cols=109  Identities=20%  Similarity=0.187  Sum_probs=63.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHH--HHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL--QKAMEE   95 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l---g~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~   95 (182)
                      +++|+|+|||||||+++.|++.+   +.  ..++. |.+++..........          ....+....+.  ...+. 
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~----------~~~~~~~~~~~~~a~~l~-   68 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSR----------EDREENIRRIAEVAKLLA-   68 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCc----------chHHHHHHHHHHHHHHHH-
Confidence            47899999999999999999988   54  33444 434433221100000          00011111111  11122 


Q ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      ..+..+|+|.......++..+.......+..+||+++|.+++++|-.+
T Consensus        69 ~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          69 DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence            235677788754556666666555433355689999999999998654

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.12  E-value=2e-09  Score=91.42  Aligned_cols=112  Identities=20%  Similarity=0.293  Sum_probs=70.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  102 (182)
                      .|+|+|++||||||+++.|++.+|+.+++.|+++.+..+  ......+.   ..+.....+...+.+++....  ...++
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g--~~i~~i~~---~~Ge~~fr~~E~~~l~~l~~~--~~~Vi   74 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG--RSVRRIFE---EDGEEYFRLKEKELLRELVER--DNVVV   74 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC--CCHHHHHH---HhhhHHHHHHHHHHHHHHhhc--CCEEE
Confidence            589999999999999999999999999999998766422  11112111   123323334444445544322  22332


Q ss_pred             EeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCC
Q 030176          103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQ  149 (182)
Q Consensus       103 ldg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~  149 (182)
                      -.|  .......+..+..      ..+|||++|.+++.+|+..+  +|+
T Consensus        75 s~Gggvv~~~~~r~~l~~------~~vI~L~as~e~l~~Rl~~~--~RP  115 (488)
T PRK13951         75 ATGGGVVIDPENRELLKK------EKTLFLYAPPEVLMERVTTE--NRP  115 (488)
T ss_pred             ECCCccccChHHHHHHhc------CeEEEEECCHHHHHHHhccC--CCC
Confidence            233  2223334434421      35899999999999999865  454

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.10  E-value=2.2e-10  Score=88.79  Aligned_cols=118  Identities=18%  Similarity=0.302  Sum_probs=72.0

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH-----------H-------cCChhhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-----------K-------SGSENGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~-----------~-------~~~~~~~~~~~~~   74 (182)
                      +-++...++.+++|.||+|||||||.|.+.   |+.....|.+.....           .       .......+..+.+
T Consensus        22 ~i~l~v~~G~~~~iiGPNGaGKSTLlK~iL---Gll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V   98 (254)
T COG1121          22 DISLSVEKGEITALIGPNGAGKSTLLKAIL---GLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV   98 (254)
T ss_pred             ccEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence            446677889999999999999999999998   755555555431111           0       1112334444444


Q ss_pred             HcCCCCC-------HHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KEGKIVP-------SEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~~~~~~-------~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .-+....       .....+.+.+.+...+...+   -+......+.|+..+++++..+|++++ ||+|+
T Consensus        99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll-LDEP~  167 (254)
T COG1121          99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL-LDEPF  167 (254)
T ss_pred             HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE-ecCCc
Confidence            4432111       11112344444443211111   133456779999999999999999888 99997

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.09  E-value=3.8e-11  Score=93.36  Aligned_cols=122  Identities=20%  Similarity=0.257  Sum_probs=69.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHHHHHHHH------------cCChhhHHHHHHHHc
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIK------------SGSENGTMIQNMIKE   76 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di~~~~~~------------~~~~~~~~~~~~~~~   76 (182)
                      +-++..+++.+++|.||+|||||||.++|+.-+.    -..++..++......            .....+....+....
T Consensus        20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~   99 (258)
T COG1120          20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLL   99 (258)
T ss_pred             cceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhh
Confidence            4466788999999999999999999999995442    233444333221111            011122222333333


Q ss_pred             CCC-----CC--HHHHHHHHHHHHHhcC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           77 GKI-----VP--SEVTIKLLQKAMEESG---NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        77 ~~~-----~~--~~~~~~~l~~~l~~~~---~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      |+.     +.  .+...+.+.+.+...+   ...-.++.....+.|+.++++++.++|++++ ||+|+.
T Consensus       100 GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL-LDEPTs  167 (258)
T COG1120         100 GRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL-LDEPTS  167 (258)
T ss_pred             cCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE-eCCCcc
Confidence            321     11  1111122333332211   0011245566789999999999999998777 999993

>PLN02348 phosphoribulokinase

Probab=99.07  E-value=5.1e-10  Score=91.68  Aligned_cols=132  Identities=17%  Similarity=0.204  Sum_probs=72.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC--------------------cEecHHHHHHHHHHcCChhhHHHHHHHHcC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY--------------------THLSAGDLLRAEIKSGSENGTMIQNMIKEG   77 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~--------------------~~~~~~di~~~~~~~~~~~~~~~~~~~~~~   77 (182)
                      ..++.+|+|+|++||||||+++.|++.|+-                    ..+..|+.+..........+..   + ...
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t---~-ldP  121 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT---A-LDP  121 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCc---c-CCc
Confidence            356789999999999999999999999862                    3566677643211100000000   0 000


Q ss_pred             CCCCHHHHHHHHHHHHHh---------------------cCCCcEEEeCC-CCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           78 KIVPSEVTIKLLQKAMEE---------------------SGNDKFLIDGF-PRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        78 ~~~~~~~~~~~l~~~l~~---------------------~~~~~~ildg~-~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      ....-+...+.+..+...                     .....+|++|. +...+       .+....|+.||+++|.+
T Consensus       122 ~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e-------~lr~l~D~~IyVd~~~d  194 (395)
T PLN02348        122 RANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE-------RVRDLLDFSIYLDISDD  194 (395)
T ss_pred             ccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc-------cccccCcEEEEEECCHH
Confidence            011112222222222211                     12457777884 21111       11123689999999999


Q ss_pred             HHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176          136 EMERRILNRNQVRQKLPFSWGVFCLFI  162 (182)
Q Consensus       136 ~l~~R~~~R~~~r~~~~~~~~~~~~~~  162 (182)
                      ..+.|..+|...+  ...+.++....+
T Consensus       195 vrl~RRI~RD~~e--RG~S~EeV~~~i  219 (395)
T PLN02348        195 VKFAWKIQRDMAE--RGHSLESIKASI  219 (395)
T ss_pred             HHHHHHHHhhHhh--cCCCHHHHHHHH
Confidence            9998888887432  123455555544

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.06  E-value=4e-10  Score=84.74  Aligned_cols=128  Identities=16%  Similarity=0.241  Sum_probs=72.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC---------cEecHHHH---------HHHHHHcC----ChhhHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY---------THLSAGDL---------LRAEIKSG----SENGTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~---------~~~~~~di---------~~~~~~~~----~~~~~~~~   71 (182)
                      -++++++..+.+|.||+||||||+.+.|-+-...         ..++..++         ++...++.    ....+++.
T Consensus        26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIy  105 (253)
T COG1117          26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIY  105 (253)
T ss_pred             CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHH
Confidence            3567899999999999999999999988543211         11222222         33333321    22334444


Q ss_pred             HHHHcCC---CCCHHHHHHHHHHHHHhcC--------CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH------
Q 030176           72 NMIKEGK---IVPSEVTIKLLQKAMEESG--------NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE------  134 (182)
Q Consensus        72 ~~~~~~~---~~~~~~~~~~l~~~l~~~~--------~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~------  134 (182)
                      +-+..|.   ...+....+.++..+....        .+.. --+....++|+.+++++++.+|++++ +|+|+      
T Consensus       106 dNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s-a~~LSGGQQQRLcIARalAv~PeVlL-mDEPtSALDPI  183 (253)
T COG1117         106 DNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKS-ALGLSGGQQQRLCIARALAVKPEVLL-MDEPTSALDPI  183 (253)
T ss_pred             HHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCC-ccCCChhHHHHHHHHHHHhcCCcEEE-ecCcccccCch
Confidence            4322221   1111333333333333210        0000 11355679999999999999998666 99997      


Q ss_pred             -----HHHHHHHHh
Q 030176          135 -----EEMERRILN  143 (182)
Q Consensus       135 -----~~l~~R~~~  143 (182)
                           |+++..+++
T Consensus       184 sT~kIEeLi~eLk~  197 (253)
T COG1117         184 STLKIEELITELKK  197 (253)
T ss_pred             hHHHHHHHHHHHHh
Confidence                 566666654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.06  E-value=3.4e-10  Score=85.13  Aligned_cols=111  Identities=17%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC---Cc------EecHHHHHHHHHHcCChhhHHHHHHH--HcCCC----CCHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG---YT------HLSAGDLLRAEIKSGSENGTMIQNMI--KEGKI----VPSEVTIK   87 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg---~~------~~~~~di~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~   87 (182)
                      +|+|+|++||||||+|+.|+..|+   ..      .+..++.+.......      .....  .....    +..+...+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~p~a~d~~~l~~   74 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRD------RKGRGENRYNFDHPDAFDFDLLKE   74 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHH------HHHHCTTTSSTTSGGGBSHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhh------HhhccccccCCCCccccCHHHHHH
Confidence            689999999999999999999996   22      333433322211100      00000  00111    22233344


Q ss_pred             HHHHHHHh----------------------cCCCcEEEeCCCCC-HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           88 LLQKAMEE----------------------SGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        88 ~l~~~l~~----------------------~~~~~~ildg~~~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      .+..+...                      .....+|++|.... .+.   ++.    ..|+.||++++.+..+.|...|
T Consensus        75 ~l~~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~~----l~D~~ifld~~~~~~l~Rri~R  147 (194)
T PF00485_consen   75 DLKALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LRD----LFDLKIFLDADEDLRLERRIQR  147 (194)
T ss_dssp             HHHHHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HGG----G-SEEEEEEE-HHHHHHHHHHH
T ss_pred             HHHHHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ecc----cceeEEEecccHHHHHHHHhhh
Confidence            44433221                      13467888884322 222   222    2589999999999999999998


Q ss_pred             hc
Q 030176          145 NQ  146 (182)
Q Consensus       145 ~~  146 (182)
                      ..
T Consensus       148 D~  149 (194)
T PF00485_consen  148 DV  149 (194)
T ss_dssp             HH
T ss_pred             hc
Confidence            74

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.04  E-value=8.4e-09  Score=76.19  Aligned_cols=108  Identities=19%  Similarity=0.243  Sum_probs=62.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH---HHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQ   90 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~   90 (182)
                      +++.+|+|+|+|||||||+++.|++.+.     ..+++.|.+ +...........           -..+..   ...+.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~-----------~~r~~~~~~~~~~a   69 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSK-----------EDRDTNIRRIGFVA   69 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCCh-----------hhHHHHHHHHHHHH
Confidence            4678999999999999999999998872     445666544 333221100000           000001   11122


Q ss_pred             HHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus        91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~  141 (182)
                      ..+. ..+..++++........+..+.... . ...+||+++|.+.+.+|.
T Consensus        70 ~~~~-~~g~~vi~~~~~~~~~~~~~l~~~~-~-~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         70 NLLT-RHGVIVLVSAISPYRETREEVRANI-G-NFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             HHHH-hCCCEEEEecCCCCHHHHHHHHhhc-C-CeEEEEEcCCHHHHHHhC
Confidence            2222 2345566776433344454554433 2 346888999999999995

>PRK15453 phosphoribulokinase; Provisional

Probab=99.04  E-value=2.2e-09  Score=84.50  Aligned_cols=39  Identities=21%  Similarity=0.294  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~   57 (182)
                      .++.+|+|+|.|||||||+++.|++.|+     ...++.|++++
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            4568999999999999999999998774     34566666654

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=99.03  E-value=4.8e-09  Score=81.65  Aligned_cols=126  Identities=17%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe---cHHHHHHHHHHcCC----------hhhHHHHHHHHcC-CCCCH--
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL---SAGDLLRAEIKSGS----------ENGTMIQNMIKEG-KIVPS--   82 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~---~~~di~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~--   82 (182)
                      .+.++|.+.|+.|+|||++|+.||+++|+.++   +.|+++.+......          ...-.+..+.... .....  
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~  148 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM  148 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence            56789999999999999999999999997654   56666544333100          0000011111111 01111  


Q ss_pred             ---------HHHHHHHHHHHHhcCCCcEEEeCCCCC-HHHH-----------------HHHHHHh---CCCCcEEEEEec
Q 030176           83 ---------EVTIKLLQKAMEESGNDKFLIDGFPRN-EENR-----------------AAFEAVT---KIEPEFVLFFDC  132 (182)
Q Consensus        83 ---------~~~~~~l~~~l~~~~~~~~ildg~~~~-~~q~-----------------~~l~~~~---~~~~~~vI~ld~  132 (182)
                               ..-.++|+..+.  .+.++|++..|.+ .-..                 .++++..   -..|++|||||.
T Consensus       149 Q~r~y~~R~~QY~dAL~HiL~--TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~  226 (393)
T KOG3877|consen  149 QDRIYNCRFDQYLDALAHILN--TGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT  226 (393)
T ss_pred             HHHHHHhHHHHHHHHHHHHHh--cCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence                     112233344442  3678889975543 1111                 1111111   135899999999


Q ss_pred             CHHHHHHHHHhhhc
Q 030176          133 SEEEMERRILNRNQ  146 (182)
Q Consensus       133 ~~~~l~~R~~~R~~  146 (182)
                      |...+.+|+++|+.
T Consensus       227 Pv~~v~~~Ik~rg~  240 (393)
T KOG3877|consen  227 PVNKVLENIKRRGN  240 (393)
T ss_pred             CcHHHHHHHHhcCC
Confidence            99999999999953

>PRK07429 phosphoribulokinase; Provisional

Probab=99.02  E-value=2.7e-09  Score=86.29  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL   56 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~   56 (182)
                      .++.+|+|+|++||||||+++.|++.++   ...+..|++.
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            4668999999999999999999998887   4456666653

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.01  E-value=2.3e-09  Score=80.74  Aligned_cols=34  Identities=32%  Similarity=0.579  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL   56 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~   56 (182)
                      +|+|+|++||||||+++.|+..++   ..++..|+++
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            589999999999999999998873   4566666654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.00  E-value=1.3e-09  Score=81.02  Aligned_cols=111  Identities=18%  Similarity=0.216  Sum_probs=64.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--   95 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l-----g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--   95 (182)
                      +|+|+|++||||||+|+.|++.+     +...++.|+++..........+.     ......+..+...+.+..+...  
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~-----~d~~~~~d~~~l~~~l~~l~~~~~   75 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGN-----YDFESILDLDLLNKNLHDLLNGKE   75 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCC-----CCCCccccHHHHHHHHHHHHCCCe
Confidence            58999999999999999999987     34678888887643100000000     0000001222233333322110  


Q ss_pred             ---------------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH-HHHHHHhhh
Q 030176           96 ---------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE-MERRILNRN  145 (182)
Q Consensus        96 ---------------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~-l~~R~~~R~  145 (182)
                                           .....+|+||......   .+...    .|+.||+++|.+. ++.|...|.
T Consensus        76 ~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~~----~d~~I~vd~~~~~~rl~rri~RD  140 (179)
T cd02028          76 VELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRSL----LDIRVAVSGGVHLNRLLRRVVRD  140 (179)
T ss_pred             eecccceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHhh----cCEEEEEeCCccHHHHHHHHHHh
Confidence                                 1245788888533322   23222    5899999999997 666666666

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.00  E-value=5.9e-09  Score=78.11  Aligned_cols=114  Identities=17%  Similarity=0.226  Sum_probs=60.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHH-HHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGD-LLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~d-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   97 (182)
                      ++|+++|+|||||||+++.|++.+.   ...++.+. ...-..... ..+..-+.+..    ...+-...++..++   +
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DE-slpi~ke~yre----s~~ks~~rlldSal---k   73 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDE-SLPILKEVYRE----SFLKSVERLLDSAL---K   73 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheeccc-ccchHHHHHHH----HHHHHHHHHHHHHh---c
Confidence            5799999999999999999998874   22222211 111111000 00000000000    00011112222222   2


Q ss_pred             CCcEEEeC--CCCC-HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           98 NDKFLIDG--FPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        98 ~~~~ildg--~~~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      +.-+|+|.  |..+ ..|..+.+..+.+ +..+|++.+|.+++++|-.+|
T Consensus        74 n~~VIvDdtNYyksmRrqL~ceak~~~t-t~ciIyl~~plDtc~rrN~er  122 (261)
T COG4088          74 NYLVIVDDTNYYKSMRRQLACEAKERKT-TWCIIYLRTPLDTCLRRNRER  122 (261)
T ss_pred             ceEEEEecccHHHHHHHHHHHHHHhcCC-ceEEEEEccCHHHHHHhhccC
Confidence            45666775  3333 4444444444543 568999999999999998776

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.00  E-value=5.4e-10  Score=85.38  Aligned_cols=39  Identities=26%  Similarity=0.446  Sum_probs=31.2

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d   54 (182)
                      +-++.+.++.+++|+||+|||||||.+.++   ++...+.+.
T Consensus        23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig---~ld~pt~G~   61 (226)
T COG1136          23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLG---GLDKPTSGE   61 (226)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHh---cccCCCCce
Confidence            345678999999999999999999999998   554444444

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.99  E-value=1.3e-08  Score=89.57  Aligned_cols=41  Identities=37%  Similarity=0.591  Sum_probs=37.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      +.++|+|.||+||||||+++.|+++||+.+++.+.+++...
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~  481 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTA  481 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHH
Confidence            35689999999999999999999999999999999988763

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.99  E-value=3.5e-10  Score=87.92  Aligned_cols=107  Identities=15%  Similarity=0.268  Sum_probs=70.8

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (182)
                      +-++++.++.+++|+|.+||||||+++.|.   ++.-...|.++++..+..               ....+...+.+.++
T Consensus        31 ~Vsf~i~~ge~~glVGESG~GKSTlgr~i~---~L~~pt~G~i~f~g~~i~---------------~~~~~~~~~~v~el   92 (268)
T COG4608          31 GVSFSIKEGETLGLVGESGCGKSTLGRLIL---GLEEPTSGEILFEGKDIT---------------KLSKEERRERVLEL   92 (268)
T ss_pred             ceeEEEcCCCEEEEEecCCCCHHHHHHHHH---cCcCCCCceEEEcCcchh---------------hcchhHHHHHHHHH
Confidence            346788999999999999999999999999   665566666655443210               01122233334444


Q ss_pred             HHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHH
Q 030176           93 MEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME  138 (182)
Q Consensus        93 l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~  138 (182)
                      +...+-..-.++.    +...+.|+..+++++..+|+++| +|+|...+-
T Consensus        93 L~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV-~DEpvSaLD  141 (268)
T COG4608          93 LEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIV-ADEPVSALD  141 (268)
T ss_pred             HHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEE-ecCchhhcc
Confidence            4332211212333    34569999999999999998877 999985544

>smart00072 GuKc Guanylate kinase homologues

Probab=98.98  E-value=1e-09  Score=81.91  Aligned_cols=117  Identities=22%  Similarity=0.374  Sum_probs=64.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh--CCcEe--cHHHHHHHHHHcCCh----hhHHHHHHHHcCCCCC--------HHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHL--SAGDLLRAEIKSGSE----NGTMIQNMIKEGKIVP--------SEV   84 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l--g~~~~--~~~di~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~   84 (182)
                      +++|+|+||+||||+|+++.|.+.+  ++..+  .+..-.+.....+.+    ....+...+..+..+.        .-.
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            5689999999999999999999885  23222  111111111001111    1133333333332211        111


Q ss_pred             HHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEe-cCHHHHHHHHHhh
Q 030176           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR  144 (182)
Q Consensus        85 ~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld-~~~~~l~~R~~~R  144 (182)
                      ..+.+.+.+..  +..+|+|..+....+....    ...| ++||+. .+.+.+.+|+.+|
T Consensus        82 ~~~~i~~~~~~--~~~~ild~~~~~~~~l~~~----~~~~-~vIfi~~~s~~~l~~rl~~R  135 (184)
T smart00072       82 SKETIRQVAEQ--GKHCLLDIDPQGVKQLRKA----QLYP-IVIFIAPPSSEELERRLRGR  135 (184)
T ss_pred             CHHHHHHHHHc--CCeEEEEECHHHHHHHHHh----CCCc-EEEEEeCcCHHHHHHHHHhc
Confidence            22334444433  5678899876665554322    2344 788898 5556799999977

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK13976 thymidylate kinase; Provisional

Probab=98.98  E-value=8.5e-09  Score=78.52  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=64.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH-HH-------HHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-VT-------IKL   88 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~-----~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~   88 (182)
                      ++|+|.|.-||||||+++.|++.|.-     ..+..      ....+...+..+++++......... ..       .+.
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~------~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~   74 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT------REPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH   74 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe------eCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence            47999999999999999999988742     11111      0001222334444433321111111 10       111


Q ss_pred             HHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh-CCCCcEEEEEecCHHHHHHHHHhh
Q 030176           89 LQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT-KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        89 l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~-~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      +.+.+..  ..+..+|.|.|..+            ......+.... ...||++|+||+|+++..+|+.+|
T Consensus        75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~  145 (209)
T PRK13976         75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN  145 (209)
T ss_pred             HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence            1111221  24678888876433            11222333222 236999999999999999999644

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.98  E-value=1.5e-08  Score=89.94  Aligned_cols=39  Identities=28%  Similarity=0.494  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      .+|+|.|||||||||+++.||+++|+.+++.|.+++...
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~   40 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACA   40 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence            379999999999999999999999999999999887754

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.97  E-value=4.3e-09  Score=83.02  Aligned_cols=107  Identities=17%  Similarity=0.231  Sum_probs=57.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH----HHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV----TIKLLQKA   92 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l---g--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~   92 (182)
                      ++|+|+|.|||||||+|+.|.+.+   +  ..+++.+++.   ..... ...          ...+..    ....++..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~----------~~~Ek~~R~~l~s~v~r~   67 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YAD----------SKKEKEARGSLKSAVERA   67 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S------------GGGHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhc----------hhhhHHHHHHHHHHHHHh
Confidence            589999999999999999999875   2  2345544443   11100 000          011122    22333333


Q ss_pred             HHhcCCCcEEEeCCC--CC-HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           93 MEESGNDKFLIDGFP--RN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        93 l~~~~~~~~ildg~~--~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +.  ....+|+|+..  .+ +-+.-++++..+. ...+||+++|.+.+++|-.+|.
T Consensus        68 ls--~~~iVI~Dd~nYiKg~RYelyclAr~~~~-~~c~i~~~~~~e~~~~~N~~R~  120 (270)
T PF08433_consen   68 LS--KDTIVILDDNNYIKGMRYELYCLARAYGT-TFCVIYCDCPLETCLQRNSKRP  120 (270)
T ss_dssp             HT--T-SEEEE-S---SHHHHHHHHHHHHHTT--EEEEEEEE--HHHHHHHHHHTT
T ss_pred             hc--cCeEEEEeCCchHHHHHHHHHHHHHHcCC-CEEEEEECCCHHHHHHhhhccC
Confidence            32  34788899843  33 3334455665654 5589999999999999999884

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK07933 thymidylate kinase; Validated

Probab=98.97  E-value=2.5e-08  Score=76.15  Aligned_cols=118  Identities=14%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC---CcEec----------HHHHHHHHHHcCC-h---hhHHHHHHHHcCCCCCHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLS----------AGDLLRAEIKSGS-E---NGTMIQNMIKEGKIVPSEV   84 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg---~~~~~----------~~di~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~   84 (182)
                      ++|+|.|+-||||||+++.|++.|.   +.++.          .++.+++...... .   ......-+....+.   +.
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~---~~   77 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRA---GA   77 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhh---hh
Confidence            4799999999999999999999883   22221          1233444333110 0   00000000000000   00


Q ss_pred             HHHHHHHHHHhcCCCcEEEeCCCCCH--------------HHHHHHHHH----hC-CCCcEEEEEecCHHHHHHHHHhhh
Q 030176           85 TIKLLQKAMEESGNDKFLIDGFPRNE--------------ENRAAFEAV----TK-IEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        85 ~~~~l~~~l~~~~~~~~ildg~~~~~--------------~q~~~l~~~----~~-~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                       ...+...+  ..+..+|.|.|..+.              ....++...    ++ ..||++||||.|++...+|+.+|+
T Consensus        78 -~~~I~p~l--~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~  154 (213)
T PRK07933         78 -RDELAGLL--AAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRA  154 (213)
T ss_pred             -HHHHHHHH--hCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhc
Confidence             11122222  235678888864331              111122111    12 269999999999999999999884

>PRK05439 pantothenate kinase; Provisional

Probab=98.97  E-value=4.3e-09  Score=84.34  Aligned_cols=118  Identities=17%  Similarity=0.295  Sum_probs=66.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHHcCChhhHHHHHHHH-cC--CCCCHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIK-EG--KIVPSEVTIK   87 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg-------~~~~~~~di~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~   87 (182)
                      ...+.+|+|+|+|||||||+|+.|++.++       ...+..|+.+....... ..+     .+. .|  ..++.+...+
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~-~~~-----l~~~kg~Pes~D~~~l~~  156 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLE-ERG-----LMKRKGFPESYDMRALLR  156 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHh-hhh-----ccccCCCcccccHHHHHH
Confidence            35678999999999999999999998664       23566666654332110 000     000 01  1122222333


Q ss_pred             HHHHHHHh------------------------cCCCcEEEeCCCCC-HH---HHHHHHHHhCCCCcEEEEEecCHHHHHH
Q 030176           88 LLQKAMEE------------------------SGNDKFLIDGFPRN-EE---NRAAFEAVTKIEPEFVLFFDCSEEEMER  139 (182)
Q Consensus        88 ~l~~~l~~------------------------~~~~~~ildg~~~~-~~---q~~~l~~~~~~~~~~vI~ld~~~~~l~~  139 (182)
                      .+..+...                        .....+|++|.... ..   ....+..    ..|+.||+|+|.+.+.+
T Consensus       157 ~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d----~~D~~IfVda~~~~~~~  232 (311)
T PRK05439        157 FLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSD----FFDFSIYVDADEDLIEK  232 (311)
T ss_pred             HHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHH----hCCEEEEEECCHHHHHH
Confidence            33322210                        12356777884221 11   1122222    24899999999999988


Q ss_pred             HHHhhh
Q 030176          140 RILNRN  145 (182)
Q Consensus       140 R~~~R~  145 (182)
                      |+.+|.
T Consensus       233 w~i~R~  238 (311)
T PRK05439        233 WYIERF  238 (311)
T ss_pred             HHHHHH
Confidence            887775

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.97  E-value=3e-09  Score=81.59  Aligned_cols=34  Identities=15%  Similarity=0.274  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLL   56 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg-------~~~~~~~di~   56 (182)
                      +|+|+|++||||||+++.|+..+.       ...+..|+.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            589999999999999999998873       2345555553

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PHA03132 thymidine kinase; Provisional

Probab=98.96  E-value=1.6e-08  Score=86.75  Aligned_cols=30  Identities=23%  Similarity=0.273  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      +..+|+|.|..||||||+++.|++.+|..+
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~V  285 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGILGDNV  285 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence            478999999999999999999999885443

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.95  E-value=2.1e-09  Score=85.89  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=68.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-------------HHcC-----ChhhHHHHHH--
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-------------IKSG-----SENGTMIQNM--   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-------------~~~~-----~~~~~~~~~~--   73 (182)
                      -++++.++.+++|.||+||||||+.+.|+   |....+.|.+....             ...-     .....+..+.  
T Consensus        24 vs~~i~~Gei~gllG~NGAGKTTllk~l~---gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~  100 (293)
T COG1131          24 VSFEVEPGEIFGLLGPNGAGKTTLLKILA---GLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLE  100 (293)
T ss_pred             eeEEEcCCeEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHH
Confidence            35678899999999999999999999999   65554444432111             1100     0011111111  


Q ss_pred             -HHcCCCCC----HHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 -IKEGKIVP----SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 -~~~~~~~~----~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       ...-...+    .+.+.+++....... ....-+..+...++|+..++.++..+|+++| ||+|+
T Consensus       101 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli-LDEPt  164 (293)
T COG1131         101 FFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLI-LDEPT  164 (293)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEE-ECCCC
Confidence             11111111    122333333322221 1123366788889999999999999998777 99998

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.95  E-value=9.7e-09  Score=88.73  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCC------cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH---HHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---EVTIK   87 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~------~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   87 (182)
                      ...++.+|+|+|++||||||+++.|++.++.      .+++.| .++..+....              .+.+   +....
T Consensus       388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~--------------~f~~~er~~~~~  452 (568)
T PRK05537        388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSEL--------------GFSKEDRDLNIL  452 (568)
T ss_pred             ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCC--------------CCCHHHHHHHHH
Confidence            4577889999999999999999999999985      666664 4454432211              1111   11111


Q ss_pred             HH---HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHH
Q 030176           88 LL---QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL  142 (182)
Q Consensus        88 ~l---~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~  142 (182)
                      .+   ...+. ..+.++|++........+....+.+.. ...++|||++|.+++.+|..
T Consensus       453 ~l~~~a~~v~-~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        453 RIGFVASEIT-KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             HHHHHHHHHH-hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc
Confidence            11   11111 235677778643334444444444422 22368999999999999974

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.94  E-value=1.5e-08  Score=74.99  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+++|+|++||||||+++.|+..++
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5799999999999999999998775

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.94  E-value=4.3e-09  Score=83.69  Aligned_cols=28  Identities=21%  Similarity=0.336  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...|.+|+|+|++||||||+++.|...+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll   86 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALL   86 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999887665

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.94  E-value=1.4e-08  Score=80.82  Aligned_cols=96  Identities=25%  Similarity=0.315  Sum_probs=56.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S   96 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~   96 (182)
                      ....+|+|+|++||||||+++.|. .+|+.+++.                           .+..+..+++......  .
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~~   55 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGGI   55 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCCC
Confidence            344689999999999999999885 668777643                           2222232333222221  1


Q ss_pred             CCCcEEEeCCCCCH-----HHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           97 GNDKFLIDGFPRNE-----ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        97 ~~~~~ildg~~~~~-----~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      ..-.+++|--....     .....+.. .+. ...+|||+++.+++.+|+.++
T Consensus        56 ~~~av~iD~r~~~~~~~~~~~~~~L~~-~g~-~~~iI~L~a~~e~L~~Rl~~~  106 (288)
T PRK05416         56 RKVAVVIDVRSRPFFDDLPEALDELRE-RGI-DVRVLFLDASDEVLIRRYSET  106 (288)
T ss_pred             CCeEEEEccCchhhHHHHHHHHHHHHH-cCC-cEEEEEEECCHHHHHHHHhhc
Confidence            22355566532211     11112222 122 225789999999999999853

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=98.93  E-value=3.9e-09  Score=78.69  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=69.1

Q ss_pred             EEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH------------HHHHHH
Q 030176           26 VLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV------------TIKLLQ   90 (182)
Q Consensus        26 I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~   90 (182)
                      |.|+.||||||+++.|++++.   +..+..      ........+..+.+++..........            ....+.
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~------~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~   74 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIIT------FPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIR   74 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEE------ESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCccccc------CCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999998873   321100      00011223344444444222222111            111122


Q ss_pred             HHHHhcCCCcEEEeCCCCC------------HHHHHHHHHHh-CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHH
Q 030176           91 KAMEESGNDKFLIDGFPRN------------EENRAAFEAVT-KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGV  157 (182)
Q Consensus        91 ~~l~~~~~~~~ildg~~~~------------~~q~~~l~~~~-~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~  157 (182)
                      ..+  ..+..+|.|.|..+            ......+...+ ...||++|+||+|+++..+|+..|.. ..........
T Consensus        75 ~~l--~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~-~~~~~~~~~~  151 (186)
T PF02223_consen   75 PAL--KRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE-KDDEEEEDLE  151 (186)
T ss_dssp             HHH--HTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS-TTTTTTHHHH
T ss_pred             HHH--cCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc-cchHHHHHHH
Confidence            222  23678888964211            22222232222 23799999999999999999999964 2223333334


Q ss_pred             HHHHHHHhh
Q 030176          158 FCLFIMLSF  166 (182)
Q Consensus       158 ~~~~~~~~~  166 (182)
                      |..-.+..+
T Consensus       152 ~~~~~~~~y  160 (186)
T PF02223_consen  152 YLRRVREAY  160 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=98.92  E-value=8e-08  Score=71.61  Aligned_cols=116  Identities=19%  Similarity=0.281  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCC-----CC---------------
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VP---------------   81 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------   81 (182)
                      .+++++|..||||||+++.+ +.+|++.+|.|.+.++...++.+....+.+.......     +.               
T Consensus         2 ~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            47899999999999999866 6999999999999999999877655555443222111     11               


Q ss_pred             --------HHHHHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           82 --------SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        82 --------~~~~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                              ..+..++.++.+..  .+...+|+|- |-.      |+..+..-...+|.+.||.+.-.+|+.+|+
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi-PLL------FE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd  147 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI-PLL------FEAKLLKICHKTVVVTCDEELQLERLVERD  147 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec-hHH------HHHhHHhheeeEEEEEECcHHHHHHHHHhc
Confidence                    11122222332222  2445555663 221      111111113456668999999999999995

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.92  E-value=3.6e-08  Score=72.83  Aligned_cols=121  Identities=16%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC--H---HHHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--S---EVTIKLLQKAM   93 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~l~~~l   93 (182)
                      +.+|+|.|++-|||||+++.|.+.+.  +.++..|.+...........+..    +......+  .   ......+...+
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~i   76 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDG----LEPAGDRPDGGPLFRRLYAAMHAAI   76 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTS----EEEETTSEEE-HHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCcc----ccccccCCchhHHHHHHHHHHHHHH
Confidence            46899999999999999999999986  45677776665422110000000    00000000  1   11122222222


Q ss_pred             Hh--cCCCcEEEeCCCCCHH-HHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           94 EE--SGNDKFLIDGFPRNEE-NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        94 ~~--~~~~~~ildg~~~~~~-q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..  ..+..+|+|....... -.+.+.+.+...+-+.|-+.||.+++.+|-..|.
T Consensus        77 aa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg  131 (174)
T PF07931_consen   77 AAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG  131 (174)
T ss_dssp             HHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred             HHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence            11  3466777887544444 3555656665456578889999999999999885

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.92  E-value=4.3e-09  Score=81.20  Aligned_cols=29  Identities=28%  Similarity=0.415  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..++.+++|+|++||||||+++.|+..+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45678999999999999999999998774

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.91  E-value=1.3e-08  Score=76.80  Aligned_cols=118  Identities=20%  Similarity=0.351  Sum_probs=60.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC-------HHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-------SEVTIKL   88 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~   88 (182)
                      ..|.++++.|+|||||||+++.+...+   ++..++.|++....    +.......   .......       ..+...+
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~----p~~~~~~~---~~~~~~~~~~~~~a~~~~~~~   85 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH----PDYDELLK---ADPDEASELTQKEASRLAEKL   85 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS----TTHHHHHH---HHCCCTHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc----cchhhhhh---hhhhhhHHHHHHHHHHHHHHH
Confidence            678999999999999999999999887   57788887652211    00000000   0011110       1122223


Q ss_pred             HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHh-CCCCc-EEEEEecCHHHHHHHHHhhh
Q 030176           89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVT-KIEPE-FVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        89 l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~-~~~~~-~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +...+.  .+..+++|+..........+.+.+ ..... .++++.+|++..+.|..+|-
T Consensus        86 ~~~a~~--~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~  142 (199)
T PF06414_consen   86 IEYAIE--NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY  142 (199)
T ss_dssp             HHHHHH--CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred             HHHHHH--cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence            333332  355778898655544443233322 21222 36668999999999999986

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.91  E-value=1.5e-09  Score=91.91  Aligned_cols=120  Identities=16%  Similarity=0.252  Sum_probs=71.0

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH---------------------------cCCh
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---------------------------SGSE   65 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~---------------------------~~~~   65 (182)
                      +-+++..++.+++|+|.+||||||+++.|+   |+...+.|.+.+....                           +...
T Consensus       309 ~VSf~l~~GE~lglVGeSGsGKSTlar~i~---gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~t  385 (539)
T COG1123         309 DVSFDLREGETLGLVGESGSGKSTLARILA---GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMT  385 (539)
T ss_pred             eeeeEecCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcccc
Confidence            346778999999999999999999999999   5544444433322211                           0011


Q ss_pred             hhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEeCC----CCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176           66 NGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGF----PRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (182)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~----~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~  136 (182)
                      .+..+.+.+............+.+.+++...+...-+++.|    ...+.|+.++++++..+|.++| +|+|...
T Consensus       386 V~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli-~DEp~Sa  459 (539)
T COG1123         386 VGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI-LDEPVSA  459 (539)
T ss_pred             HHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEE-ecCCccc
Confidence            22222222222222222222233444444322212134444    4569999999999999998777 9999843

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=3.2e-09  Score=80.65  Aligned_cols=116  Identities=24%  Similarity=0.407  Sum_probs=68.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHHH------------------------cCChhhH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIK------------------------SGSENGT   68 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~~------------------------~~~~~~~   68 (182)
                      ++++..+.+.+|+||+|||||||+..|+   |.+  .+..|+++.+..+                        ++-....
T Consensus        24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~---G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~  100 (251)
T COG0396          24 NLTVKEGEVHAIMGPNGSGKSTLAYTIM---GHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSD  100 (251)
T ss_pred             ceeEcCCcEEEEECCCCCCHHHHHHHHh---CCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHH
Confidence            5567899999999999999999999999   644  3444444322221                        0001122


Q ss_pred             HHHHHHHcCCCCC--HHHHHHHHHHHHHhcC-----CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           69 MIQNMIKEGKIVP--SEVTIKLLQKAMEESG-----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        69 ~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~-----~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +++...+..+...  .....+.+++.+..-.     ..-.+-+||....+.+.++.+.+..+|+++| ||+|+
T Consensus       101 fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~I-LDE~D  172 (251)
T COG0396         101 FLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI-LDEPD  172 (251)
T ss_pred             HHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEE-ecCCC
Confidence            2222222211111  1122233333222211     1123466888889999999999999999988 99988

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.91  E-value=4.8e-08  Score=77.78  Aligned_cols=127  Identities=17%  Similarity=0.214  Sum_probs=71.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC------ChhhHHHHHHHH-------------cCCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG------SENGTMIQNMIK-------------EGKI   79 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~------~~~~~~~~~~~~-------------~~~~   79 (182)
                      ..|.+|+|+|++||||||+|..|++.||...+...|.+++.+..-      +....+....+.             .+..
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~  169 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE  169 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence            467899999999999999999999999988554456666544421      111111111111             0111


Q ss_pred             CCHHHHHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEEe-cCHHHHHHHHHhhhccC
Q 030176           80 VPSEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFD-CSEEEMERRILNRNQVR  148 (182)
Q Consensus        80 ~~~~~~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~-~vI~ld-~~~~~l~~R~~~R~~~r  148 (182)
                      .+.+.+...+...+..  ..+...|++|..........+....   +. +.+++. .+.+...+|+..|....
T Consensus       170 ~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~---~~~i~~~l~i~~ee~h~~RF~~R~~~~  239 (301)
T PRK04220        170 RHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLEN---PNVFMFVLTLSDEEAHKARFYARARVS  239 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcC---CCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence            1112222223333332  2467889999755544333322212   22 233344 46699999999887543

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.91  E-value=3.7e-09  Score=93.13  Aligned_cols=121  Identities=23%  Similarity=0.325  Sum_probs=73.2

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~   74 (182)
                      +-+++++++..++|+|.+|||||||+|.|.   |+..+..|.+              +++......+    ...++.+-+
T Consensus       491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~---gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi  567 (709)
T COG2274         491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLL---GLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENI  567 (709)
T ss_pred             ceeEEeCCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHH
Confidence            446778999999999999999999999999   5444433333              2333322221    122222222


Q ss_pred             HcC-CCCCHHHHHHHHHHH-----HHh-c-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           75 KEG-KIVPSEVTIKLLQKA-----MEE-S-GNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        75 ~~~-~~~~~~~~~~~l~~~-----l~~-~-~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                      ..+ -..+++.+.++++..     +.+ + +.+..+-++   ...+++|+..+++++-.+|.++| ||+++..+
T Consensus       568 ~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILl-LDEaTSaL  640 (709)
T COG2274         568 ALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILL-LDEATSAL  640 (709)
T ss_pred             hcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEE-EeCccccc
Confidence            222 334445555554432     222 2 223333332   45569999999999998998777 99998443

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.90  E-value=2.2e-08  Score=78.77  Aligned_cols=92  Identities=25%  Similarity=0.395  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---CC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES---GN   98 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~   98 (182)
                      .+++|+|.+||||||.++.| +.+||.++|.                           +|..++.+++.......   ..
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~   53 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK   53 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence            47999999999999998877 8999998875                           67777777765544221   22


Q ss_pred             CcEEEeCCCCC-----HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           99 DKFLIDGFPRN-----EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        99 ~~~ildg~~~~-----~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      -.+++|--...     ......+.. .+... -+|||+|+.++|.+|+.+
T Consensus        54 ~Ai~iD~R~~~~~~~~~~~~~~l~~-~~~~~-~ilFLdA~d~~LirRy~e  101 (284)
T PF03668_consen   54 VAIVIDIRSREFFEDLFEALDELRK-KGIDV-RILFLDASDEVLIRRYSE  101 (284)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHHHh-cCCce-EEEEEECChHHHHHHHHh
Confidence            34455532111     111112222 23334 477899999999999997

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.89  E-value=3.2e-08  Score=74.80  Aligned_cols=28  Identities=21%  Similarity=0.399  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +++.+|+|+||+|||||||++.|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5788999999999999999999998775

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.89  E-value=3.2e-09  Score=79.28  Aligned_cols=123  Identities=13%  Similarity=0.155  Sum_probs=66.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHHHHHHHHcCChhh-----------HHHHHH---H
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDLLRAEIKSGSENG-----------TMIQNM---I   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di~~~~~~~~~~~~-----------~~~~~~---~   74 (182)
                      +-++....+.+.+|.|++|+||||+.+.|+.-+    |...++.-|..++.......+|           .+.++.   .
T Consensus        20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~F   99 (245)
T COG4555          20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYF   99 (245)
T ss_pred             heeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHH
Confidence            346667899999999999999999999999554    2223333222222221111111           111110   0


Q ss_pred             HcCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176           75 KEGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (182)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~  136 (182)
                      ..-....+..+.+.+.++...-+...+   =+-+|...++|...+++++..+|+++| ||+|...
T Consensus       100 a~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v-lDEP~sG  163 (245)
T COG4555         100 ARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV-LDEPTSG  163 (245)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE-EcCCCCC
Confidence            000111111112222222211110011   022577889999999999999998777 9999743

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.87  E-value=1.7e-07  Score=78.53  Aligned_cols=43  Identities=23%  Similarity=0.442  Sum_probs=35.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~   61 (182)
                      .+|.+|+++|++||||||++..||..+|+..+...|.+++.+.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr  295 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLR  295 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHH
Confidence            4689999999999999999999999999986544566555444

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.87  E-value=2.5e-09  Score=79.59  Aligned_cols=120  Identities=23%  Similarity=0.381  Sum_probs=72.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH---cCChhhHHHHH-----------HHHcC-
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---SGSENGTMIQN-----------MIKEG-   77 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~---~~~~~~~~~~~-----------~~~~~-   77 (182)
                      +-+..+.++..+++.||+|||||||.+.+|   |+...+.+.+..+...   ++.+.+..+++           -...+ 
T Consensus        23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A---Gf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL   99 (259)
T COG4525          23 DVSLTIASGELVVVLGPSGCGKTTLLNLIA---GFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGL   99 (259)
T ss_pred             ccceeecCCCEEEEEcCCCccHHHHHHHHh---cCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHH
Confidence            445677899999999999999999999999   8776666655332221   11222222221           01111 


Q ss_pred             --CCCCHHHHHHHHHHHH----HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           78 --KIVPSEVTIKLLQKAM----EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        78 --~~~~~~~~~~~l~~~l----~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                        .-++.....+...+.+    .+...+.+ +-.....+.|+.-+++++..+|++++ +|+|...+
T Consensus       100 ~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~-i~qLSGGmrQRvGiARALa~eP~~Ll-LDEPfgAl  163 (259)
T COG4525         100 QLRGIEKAQRREIAHQMLALVGLEGAEHKY-IWQLSGGMRQRVGIARALAVEPQLLL-LDEPFGAL  163 (259)
T ss_pred             HhcCCCHHHHHHHHHHHHHHhCcccccccc-eEeecchHHHHHHHHHHhhcCcceEe-ecCchhhH
Confidence              1122222223333333    23222333 22345679999999999999999887 99998443

>COG4639 Predicted kinase [General function prediction only]

Probab=98.87  E-value=5.6e-08  Score=69.68  Aligned_cols=111  Identities=21%  Similarity=0.156  Sum_probs=67.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SGN   98 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~   98 (182)
                      ..+++++|+|||||||.++...  .....++.+++-...-..       ..+.   ...-.++.+.+.+...+.+  ..+
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~~-------~~~e---~sqk~~~~~~~~l~~~l~qrl~~G   69 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGVS-------ASKE---NSQKNDELVWDILYKQLEQRLRRG   69 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhhc-------hhhh---hccccHHHHHHHHHHHHHHHHHcC
Confidence            4689999999999999988532  256667766653332110       0000   1112223334444433333  236


Q ss_pred             CcEEEeCCCCC---HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           99 DKFLIDGFPRN---EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        99 ~~~ildg~~~~---~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      +..|+|-....   .++...++..++-.. +.|+||.|.+.|.+|.+.|
T Consensus        70 k~tiidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          70 KFTIIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             CeEEEEcccCCHHHHHHHHHHHHHhCCeE-EEEEEeCCHHHHHHHhhcc
Confidence            77889987644   444555666665444 6788999999999997644

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.86  E-value=1.7e-08  Score=78.96  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~   57 (182)
                      +|+|+|++||||||+++.|.+.|+     ...++.|++++
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            589999999999999999998774     34566666665

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.86  E-value=8.8e-10  Score=94.66  Aligned_cols=119  Identities=21%  Similarity=0.296  Sum_probs=69.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEe---cHHHHHHHHHH----cCCh----hhHHHHHHHHcC-C
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHL---SAGDLLRAEIK----SGSE----NGTMIQNMIKEG-K   78 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~---~~~di~~~~~~----~~~~----~~~~~~~~~~~~-~   78 (182)
                      +++++++..++|+|++|||||||++.|...+.    -..+   +..++ .+...    ..++    ...++.+-+.-+ .
T Consensus       355 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~  433 (529)
T TIGR02868       355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP  433 (529)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC
Confidence            45678999999999999999999999995442    1112   22333 22222    1111    122222222222 2


Q ss_pred             CCCHHHHHHHHHHH-----HHh-cCC-CcEEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           79 IVPSEVTIKLLQKA-----MEE-SGN-DKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        79 ~~~~~~~~~~l~~~-----l~~-~~~-~~~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      ..+++.+.+.++..     +.+ +++ +..+-+ |  ....++|+..++|++-.+|+++| ||+|+.
T Consensus       434 ~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili-LDE~TS  499 (529)
T TIGR02868       434 DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL-LDEPTE  499 (529)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE-EeCCcc
Confidence            34555555555432     211 122 222222 1  44569999999999988998888 999873

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.86  E-value=9.9e-09  Score=77.98  Aligned_cols=28  Identities=32%  Similarity=0.472  Sum_probs=24.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++.++.+|+|+||+|||||||++.|.+.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4567889999999999999999999754

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.86  E-value=3.9e-08  Score=86.31  Aligned_cols=109  Identities=19%  Similarity=0.179  Sum_probs=67.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH---HHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE---VTIKLL   89 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l   89 (182)
                      ..++.+|+++|.|||||||+++.|++.+.     ..+++.|++ +......              ..+.++   .....+
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~-r~~l~~~--------------~~~~~~~r~~~~~~l  521 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNV-RHGLNRD--------------LGFSDADRVENIRRV  521 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh-hhccCCC--------------CCCCHHHHHHHHHHH
Confidence            34689999999999999999999999873     456676554 3332211              111111   111111


Q ss_pred             HHHHH--hcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176           90 QKAME--ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus        90 ~~~l~--~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~  141 (182)
                      .....  ...+..+++|.......++..++......+..+|||++|.+.+++|.
T Consensus       522 ~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        522 AEVARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence            11111  13356677776544566666665544333457899999999999994

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.85  E-value=1.2e-08  Score=80.76  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL   56 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~   56 (182)
                      +++|+|++||||||+++.|+..++   ...+..|++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            489999999999999999998774   4456666553

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.84  E-value=5.5e-09  Score=83.03  Aligned_cols=123  Identities=15%  Similarity=0.229  Sum_probs=79.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHH--------------H---------------c
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEI--------------K---------------S   62 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di~~~~~--------------~---------------~   62 (182)
                      -+++..++.+++|+|-+||||||+++.+...+..  ..+..|++..+..              +               +
T Consensus        24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnP  103 (316)
T COG0444          24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNP  103 (316)
T ss_pred             eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCC
Confidence            4677899999999999999999999999977652  2333333322111              1               1


Q ss_pred             CChhhHHHHHHHHcCCCC-CHHHHHHHHHHHHHhcCCC--cEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           63 GSENGTMIQNMIKEGKIV-PSEVTIKLLQKAMEESGND--KFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~--~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      ...++.++.+.+..+... ..+...+.+.+++...+-.  .-+++.||    ..+.|+..++.++..+|+++| .|+|+.
T Consensus       104 v~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI-ADEPTT  182 (316)
T COG0444         104 VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI-ADEPTT  182 (316)
T ss_pred             hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE-eCCCcc
Confidence            123566666666654333 3343444455555442211  11355555    459999999999999999888 999984


Q ss_pred             HH
Q 030176          136 EM  137 (182)
Q Consensus       136 ~l  137 (182)
                      .|
T Consensus       183 AL  184 (316)
T COG0444         183 AL  184 (316)
T ss_pred             hh
Confidence            43

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.83  E-value=1.3e-08  Score=78.77  Aligned_cols=117  Identities=22%  Similarity=0.359  Sum_probs=72.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH------------HHHHH------cCC---hhhHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL------------RAEIK------SGS---ENGTMIQ   71 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~------------~~~~~------~~~---~~~~~~~   71 (182)
                      +.++.+.++..++|.|++|||||||++.|+   |+.....+.+.            .....      ..+   -......
T Consensus        22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~---GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~   98 (235)
T COG1122          22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLN---GLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVE   98 (235)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHc---CcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHH
Confidence            345677889999999999999999999998   54444433331            11111      000   0111222


Q ss_pred             HHHHc---CCCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKE---GKIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+..   +...+.+.+.+.+.+.+........ .+.    ....++|+..++..+..+|+++| ||+|+
T Consensus        99 ~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LSGGqkqRvaIA~vLa~~P~ili-LDEPt  166 (235)
T COG1122          99 DEVAFGLENLGLPREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRVAIAGVLAMGPEILL-LDEPT  166 (235)
T ss_pred             HHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh-ccCCccccCCcceeeHHhhHHHHcCCCEEE-EcCCC
Confidence            22222   2345555566666666655332222 333    34569999999999999999888 99998

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.83  E-value=9.8e-09  Score=79.29  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=69.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHH-------HHHHHHcCC------hhhHHHHHH--
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDL-------LRAEIKSGS------ENGTMIQNM--   73 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di-------~~~~~~~~~------~~~~~~~~~--   73 (182)
                      +-+++++.+.++++.||+||||||+.+.+-.-.    |-..++..++       ++..++..-      +.-...++.  
T Consensus        19 ~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~   98 (309)
T COG1125          19 DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT   98 (309)
T ss_pred             eeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHh
Confidence            345678999999999999999999999886332    2222222111       222222100      000000000  


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHhcCCCc-EEEeCCCC----CHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPR----NEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~l~~~~~~~-~ildg~~~----~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .-.-..++.+.+.+...+++..-+... -..+.||.    .++|+.-+.++++.+|.+++ +|+|+
T Consensus        99 VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL-MDEPF  163 (309)
T COG1125          99 VPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL-MDEPF  163 (309)
T ss_pred             hhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe-ecCCc
Confidence            000122344555555555554433222 13666664    59999999999999998766 99997

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.82  E-value=5e-08  Score=72.20  Aligned_cols=26  Identities=23%  Similarity=0.348  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +.+|+|+||+||||||+++.|++.++
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            46899999999999999999997664

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=1.4e-08  Score=82.35  Aligned_cols=117  Identities=16%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHc------C---------Ch
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKS------G---------SE   65 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~------~---------~~   65 (182)
                      -++++.++.+++|+|++|||||||++.|+..+   ..+.|.+..             .....      +         ..
T Consensus        34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~---~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~  110 (327)
T PRK11308         34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIE---TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKK  110 (327)
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHHcCC---CCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccC
Confidence            36678899999999999999999999999433   222222110             00010      0         01


Q ss_pred             hhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           66 NGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+..+...+..+.........+.+.+.+...+...-.++.    +...+.|+..+++++..+|+++| +|+|+
T Consensus       111 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLi-lDEPt  182 (327)
T PRK11308        111 VGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVV-ADEPV  182 (327)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence            1222221111111122222223334444332111111233    34459999999999999998777 99998

>PHA00729 NTP-binding motif containing protein

Probab=98.81  E-value=3.7e-08  Score=75.44  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN   98 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~   98 (182)
                      ..|+|+|+||+||||||..|+++++..  .+..++..++...              ....++.+...+.+....... ..
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~--------------~~~fid~~~Ll~~L~~a~~~~~~~   83 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQ--------------NSYFFELPDALEKIQDAIDNDYRI   83 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCC--------------cEEEEEHHHHHHHHHHHHhcCCCC
Confidence            479999999999999999999887621  2222211111100              011223333444444433221 12


Q ss_pred             CcEEEeCCCCCHHH----------HHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEEN----------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q----------~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+|+|++......          ...+..++....+++++...+++.+.+++++|.
T Consensus        84 dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg  140 (226)
T PHA00729         84 PLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG  140 (226)
T ss_pred             CEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence            34688874322111          112333343357789989999999999999986

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.81  E-value=9e-09  Score=81.67  Aligned_cols=120  Identities=19%  Similarity=0.316  Sum_probs=72.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHHHH-------HHHHcCChhhHHHHHH--------
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDLLR-------AEIKSGSENGTMIQNM--------   73 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di~~-------~~~~~~~~~~~~~~~~--------   73 (182)
                      +.+++...+.+.+|+|.+|||||||.+.+-.-.    |-..++..|+..       +..  ....++.+|.+        
T Consensus        46 ~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~R--r~~~sMVFQ~FaLlPhrtV  123 (386)
T COG4175          46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR--RKKISMVFQSFALLPHRTV  123 (386)
T ss_pred             cceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHH--hhhhhhhhhhhccccchhH
Confidence            346678999999999999999999999886322    223333333322       111  12344555543        


Q ss_pred             HHc---C---CCCCHHHHHHHHHHHHHhcCCCcEEEeCC----CCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176           74 IKE---G---KIVPSEVTIKLLQKAMEESGNDKFLIDGF----PRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (182)
Q Consensus        74 ~~~---~---~~~~~~~~~~~l~~~l~~~~~~~~ildg~----~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~  136 (182)
                      +++   |   .-.+.+...+...+.+...+..+| -+.|    ...++|+.-+++++..+|++++ +|+++..
T Consensus       124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~-~~~yp~eLSGGMqQRVGLARAla~~~~IlL-MDEaFSA  194 (386)
T COG4175         124 LENVAFGLEVQGVPKAEREERALEALELVGLEGY-ADKYPNELSGGMQQRVGLARALANDPDILL-MDEAFSA  194 (386)
T ss_pred             hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh-hhcCcccccchHHHHHHHHHHHccCCCEEE-ecCchhh
Confidence            111   1   113344444444454444332223 2333    4569999999999999999887 9999844

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.81  E-value=2.2e-07  Score=83.46  Aligned_cols=44  Identities=25%  Similarity=0.407  Sum_probs=39.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~   61 (182)
                      ++.+.+|+|.||+||||||+++.||++|++.++++|.++|....
T Consensus        31 ~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~   74 (863)
T PRK12269         31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTL   74 (863)
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHH
Confidence            45557999999999999999999999999999999999887654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.81  E-value=1.6e-08  Score=63.46  Aligned_cols=23  Identities=35%  Similarity=0.723  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +|+|+|++||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999885

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=5.8e-09  Score=85.48  Aligned_cols=116  Identities=17%  Similarity=0.275  Sum_probs=66.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhh-----------HHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENG-----------TMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~-----------~~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+....      ....+           ....+.+..
T Consensus        23 vsl~i~~Ge~~~llG~sGsGKSTLLr~ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~   99 (356)
T PRK11650         23 IDLDVADGEFIVLVGPSGCGKSTLLRMVA---GLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAY   99 (356)
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHh
Confidence            35677899999999999999999999999   66555555442211100      00001           111111111


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +   ...+.....+.+.+.+..-+-.. ..+    .....++|+..+++++..+|++++ ||+|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~~~P~llL-LDEP~  162 (356)
T PRK11650        100 GLKIRGMPKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFL-FDEPL  162 (356)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            1   11222222233333333321111 123    344569999999999999998777 99998

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.81  E-value=7.9e-09  Score=80.82  Aligned_cols=116  Identities=15%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH---H-------cCChhhHHHHHHHHcCCCCCHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI---K-------SGSENGTMIQNMIKEGKIVPSE   83 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~   83 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |....+.|.+.....   .       ..........+..........+
T Consensus        23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~---Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~   99 (251)
T PRK09544         23 VSLELKPGKILTLLGPNGAGKSTLVRVVL---GLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKE   99 (251)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHH
Confidence            35677899999999999999999999999   544344443321110   0       0000001112221111111222


Q ss_pred             HHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        84 ~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+++.........+. -...++..+.++..+++++..+|++++ +|+|+
T Consensus       100 ~~~~~l~~~gl~~~~~~-~~~~LSgGq~qrv~laral~~~p~lll-LDEPt  148 (251)
T PRK09544        100 DILPALKRVQAGHLIDA-PMQKLSGGETQRVLLARALLNRPQLLV-LDEPT  148 (251)
T ss_pred             HHHHHHHHcCChHHHhC-ChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            22232222211100000 123355679999999999988998777 99998

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=2.8e-09  Score=87.20  Aligned_cols=117  Identities=21%  Similarity=0.288  Sum_probs=67.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhH-----------HHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGT-----------MIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~-----------~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|.+..+....      ....+.           ...+.+..
T Consensus        25 isl~i~~Ge~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~  101 (351)
T PRK11432         25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVA---GLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGY  101 (351)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHH
Confidence            35667889999999999999999999999   76655555442211100      000111           11111111


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      +   ...+.+...+.+.+.+..-.... +.+.    ....++|+..+++++..+|++++ ||+|..
T Consensus       102 ~l~~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL-LDEP~s  165 (351)
T PRK11432        102 GLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALARALILKPKVLL-FDEPLS  165 (351)
T ss_pred             HHhHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EcCCcc
Confidence            1   11222223333344433322111 1333    34459999999999999998877 999983

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.80  E-value=6.8e-10  Score=82.10  Aligned_cols=121  Identities=21%  Similarity=0.242  Sum_probs=67.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHHHHHHHH----cCChhhHHHHHHHHc-------C
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDLLRAEIK----SGSENGTMIQNMIKE-------G   77 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di~~~~~~----~~~~~~~~~~~~~~~-------~   77 (182)
                      +-++.++++.++.++||+||||||+.+.|....    |...+..-|+.+-...    ....+|..+|++..-       +
T Consensus        20 ~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeN   99 (223)
T COG2884          20 DVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYEN   99 (223)
T ss_pred             CceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhh
Confidence            346778999999999999999999999998654    2222322222111000    011233333332100       0


Q ss_pred             -------CCCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           78 -------KIVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        78 -------~~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                             .-.+.+.+.+.+.+.+...+.   ...+-+......+|+..++++....|.+++ .|+|+
T Consensus       100 VA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl-ADEPT  165 (223)
T COG2884         100 VALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL-ADEPT  165 (223)
T ss_pred             hhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe-ecCCC
Confidence                   011223333333444433111   011122344569999999999988998777 89987

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.80  E-value=9.5e-08  Score=71.49  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .++.+|+|+||+|||||||++.|.+.+.
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~   29 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHP   29 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3678999999999999999999988763

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.79  E-value=9.8e-09  Score=82.35  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCC-----hhhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGS-----ENGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~-----~~~~~~~~~~~   75 (182)
                      -++.+.++.+++|+||+|||||||++.|+   |+...+.|++..             .....-.     .......+.+.
T Consensus        12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~   88 (302)
T TIGR01188        12 VNFKVREGEVFGFLGPNGAGKTTTIRMLT---TLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLE   88 (302)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHH
Confidence            35677899999999999999999999999   544444433211             1111000     00111111111


Q ss_pred             c---CCCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 E---GKIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~---~~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .   ....+.....+.+.+.+..-+-.   ..-+..+...++|+..+++++..+|+++| ||+|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt  152 (302)
T TIGR01188        89 MMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF-LDEPT  152 (302)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            0   01112121122223333221110   11133456679999999999988998777 99998

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.78  E-value=9.9e-09  Score=81.14  Aligned_cols=119  Identities=21%  Similarity=0.295  Sum_probs=69.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHH----HHHHcCChhhHHHHHH-------HHc
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLR----AEIKSGSENGTMIQNM-------IKE   76 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l-----g~~~~~~~di~~----~~~~~~~~~~~~~~~~-------~~~   76 (182)
                      +-++.++++.+++|.|.+|+|||||.+++- .+     |-..++..++..    ........+|+.+|.+       ...
T Consensus        24 ~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN-~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~  102 (339)
T COG1135          24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLIN-LLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFE  102 (339)
T ss_pred             cceEEEcCCcEEEEEcCCCCcHHHHHHHHh-ccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHh
Confidence            346678999999999999999999999875 22     222333322211    0111112233333332       000


Q ss_pred             C-------CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G-------KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~-------~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +       ...+.+.+.+.+.+++.-.+-... .+.||    ..++|+..+++++..+|++++ +|+++
T Consensus       103 NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-~~~yP~qLSGGQKQRVaIARALa~~P~iLL-~DEaT  169 (339)
T COG1135         103 NVAFPLELAGVPKAEIKQRVAELLELVGLSDK-ADRYPAQLSGGQKQRVAIARALANNPKILL-CDEAT  169 (339)
T ss_pred             hhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-hccCchhcCcchhhHHHHHHHHhcCCCEEE-ecCcc
Confidence            1       113444444555555543222222 34454    459999999999999998777 88876

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.78  E-value=5.1e-09  Score=77.79  Aligned_cols=107  Identities=19%  Similarity=0.248  Sum_probs=61.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC-hhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-ENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |....+.|++..+...... ....    . .....    .+.+++...
T Consensus        18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~---G~~~~~~G~v~~~g~~~~~~~~~~----~-~~~i~----~~~q~l~~~   85 (180)
T cd03214          18 LSLSIEAGEIVGILGPNGAGKSTLLKTLA---GLLKPSSGEILLDGKDLASLSPKE----L-ARKIA----YVPQALELL   85 (180)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCcCCHHH----H-HHHHh----HHHHHHHHc
Confidence            35667899999999999999999999999   6554555544322111000 0000    0 00000    000011111


Q ss_pred             HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      -....... -...++..+.|+..+.+++..+|++++ +|+|+
T Consensus        86 gl~~~~~~-~~~~LS~G~~qrl~laral~~~p~lll-lDEP~  125 (180)
T cd03214          86 GLAHLADR-PFNELSGGERQRVLLARALAQEPPILL-LDEPT  125 (180)
T ss_pred             CCHhHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            00000000 123456679999999999988998888 99998

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.77  E-value=6.4e-09  Score=79.39  Aligned_cols=117  Identities=13%  Similarity=0.070  Sum_probs=63.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-HHHHH--cC----ChhhHHHHHHHH---cCCCCCHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-RAEIK--SG----SENGTMIQNMIK---EGKIVPSE   83 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-~~~~~--~~----~~~~~~~~~~~~---~~~~~~~~   83 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |....+.|++. .....  ..    ........+.+.   .......+
T Consensus         6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~---Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~   82 (213)
T PRK15177          6 TDFVMGYHEHIGILAAPGSGKTTLTRLLC---GLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGD   82 (213)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHh---CCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHH
Confidence            35677899999999999999999999999   65555555542 11100  00    000111111111   00112222


Q ss_pred             HHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        84 ~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .....+.+...-......-+..++..++++..+++++..+|++++ +|+|+
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~lll-lDEP~  132 (213)
T PRK15177         83 EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYI-ADGKL  132 (213)
T ss_pred             HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEE-ECCCC
Confidence            212222111100000011133456679999999999988998777 99985

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.77  E-value=4e-08  Score=82.23  Aligned_cols=120  Identities=22%  Similarity=0.344  Sum_probs=75.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHHHHHH-HHcCCh-----------hhHHHHHHHHcC
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDLLRAE-IKSGSE-----------NGTMIQNMIKEG   77 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di~~~~-~~~~~~-----------~~~~~~~~~~~~   77 (182)
                      -++....+..++|.||+|||||||++.|....    |-+.+|.-++-... ...+..           .|...++.-..+
T Consensus       355 isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~  434 (580)
T COG4618         355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG  434 (580)
T ss_pred             ceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcc
Confidence            35567889999999999999999999998554    45566665653211 111111           133333333334


Q ss_pred             CCCCHHHHHHHH-----HHHHHh--cCCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           78 KIVPSEVTIKLL-----QKAMEE--SGNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        78 ~~~~~~~~~~~l-----~~~l~~--~~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...+.+.+++..     .+++.+  .+.+..|=++   ....++|+..+++++..+|.++| ||+|.
T Consensus       435 ~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV-LDEPN  500 (580)
T COG4618         435 EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV-LDEPN  500 (580)
T ss_pred             ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE-ecCCC
Confidence            445555444442     344443  2233343333   34569999999999988997666 99987

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.77  E-value=2e-08  Score=81.96  Aligned_cols=116  Identities=15%  Similarity=0.182  Sum_probs=65.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-----------------HHHcCC-----hhhHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----------------EIKSGS-----ENGTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-----------------~~~~~~-----~~~~~~~   71 (182)
                      -++++.++.+++|.|++|||||||++.|+   |+...+.|.+..+                 .+..-.     .......
T Consensus        24 vsl~i~~Gei~gIiG~sGaGKSTLlr~I~---gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~  100 (343)
T TIGR02314        24 VSLHVPAGQIYGVIGASGAGKSTLIRCVN---LLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVF  100 (343)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHH
Confidence            35678899999999999999999999999   5444444432110                 001000     0001111


Q ss_pred             HHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+...   ...+.....+.+.+.+....-... .+.    +...++|+..+++++..+|++++ +|+|+
T Consensus       101 eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~-~~~~~~~LSgGqkQRV~IARAL~~~P~iLL-lDEPt  168 (343)
T TIGR02314       101 GNVALPLELDNTPKDEIKRKVTELLALVGLGDK-HDSYPSNLSGGQKQRVAIARALASNPKVLL-CDEAT  168 (343)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHHHHhCCCEEE-EeCCc
Confidence            111100   112222222333333333221111 333    34459999999999999999888 99998

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.77  E-value=9.8e-09  Score=78.48  Aligned_cols=118  Identities=14%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~   74 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |....+.|++..             .......+     ......+.+
T Consensus        20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l   96 (220)
T cd03263          20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLT---GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHL   96 (220)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHH
Confidence            345678899999999999999999999999   543333332211             00000000     000111111


Q ss_pred             Hc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..   ....+.....+.+.+.+..-.-...   ....++..+.|+..+++++..+|+++| +|+|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll-lDEP~  161 (220)
T cd03263          97 RFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL-LDEPT  161 (220)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE-ECCCC
Confidence            10   0111221112222233322111011   122355669999999999988998877 99998

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=6.9e-08  Score=81.27  Aligned_cols=130  Identities=18%  Similarity=0.222  Sum_probs=78.6

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEecHHH-------HHHHHHHcCChhhHHHHH-----HHHcCC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLSAGD-------LLRAEIKSGSENGTMIQN-----MIKEGK   78 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~~~~d-------i~~~~~~~~~~~~~~~~~-----~~~~~~   78 (182)
                      +++..++..|+|.|++||||||+++.|.+.+..    ..++..+       -+++.+..-.+....+..     ....+.
T Consensus       358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~  437 (573)
T COG4987         358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP  437 (573)
T ss_pred             ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC
Confidence            556788999999999999999999999966531    1111111       133333322222222222     222233


Q ss_pred             CCCHHHHHHHHHHHHH-----hc--CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH--------HHHHHH
Q 030176           79 IVPSEVTIKLLQKAME-----ES--GNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE--------EEMERR  140 (182)
Q Consensus        79 ~~~~~~~~~~l~~~l~-----~~--~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~--------~~l~~R  140 (182)
                      ...++.+.+.++.+-.     ..  +.+.++-|+   +...+.++..+++.+-.+..+++ ||+|+        +.++++
T Consensus       438 ~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~l-LDEPTegLD~~TE~~vL~l  516 (573)
T COG4987         438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL-LDEPTEGLDPITERQVLAL  516 (573)
T ss_pred             CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEE-ecCCcccCChhhHHHHHHH
Confidence            4567777777665432     21  234454443   56779999999999866766777 99998        344555


Q ss_pred             HHhhh
Q 030176          141 ILNRN  145 (182)
Q Consensus       141 ~~~R~  145 (182)
                      +.++-
T Consensus       517 l~~~~  521 (573)
T COG4987         517 LFEHA  521 (573)
T ss_pred             HHHHh
Confidence            55543

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.76  E-value=2e-08  Score=76.54  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567789999999999999999999999943

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.76  E-value=9.4e-09  Score=78.45  Aligned_cols=39  Identities=21%  Similarity=0.493  Sum_probs=31.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      -++.++++..++|.|++|||||||.+.|.   +..-.+.|++
T Consensus        23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~ln---gl~d~t~G~i   61 (258)
T COG3638          23 VNLEINQGEMVAIIGPSGAGKSTLLRSLN---GLVDPTSGEI   61 (258)
T ss_pred             EeEEeCCCcEEEEECCCCCcHHHHHHHHh---cccCCCcceE
Confidence            35678999999999999999999999998   4444444443

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.76  E-value=8.2e-09  Score=78.17  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=28.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538         19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             cceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44667889999999999999999999999943

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.76  E-value=1.5e-07  Score=72.77  Aligned_cols=117  Identities=18%  Similarity=0.287  Sum_probs=64.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------------HHHHcCCh-----hhHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------------AEIKSGSE-----NGTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------------~~~~~~~~-----~~~~~~   71 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|++..                 .......+     ......
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   95 (235)
T cd03261          19 VDLDVRRGEILAIIGPSGSGKSTLLRLIV---GLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVF   95 (235)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHH
Confidence            35678899999999999999999999999   543333332211                 00000000     011111


Q ss_pred             HHHHcC----CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKEG----KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+...    ...+.+...+.+.+.+..-+-...   -+..+...++|+..+++++..+|+++| +|+|+
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll-lDEPt  164 (235)
T cd03261          96 ENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL-YDEPT  164 (235)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-ecCCc
Confidence            111110    012222222233333333211111   112345569999999999998998777 99998

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.76  E-value=7.5e-08  Score=78.14  Aligned_cols=116  Identities=15%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcC---ChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSG---SENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg------~~~~~~~di~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   93 (182)
                      +.+++|++||||||+++.|+..+.      ..+++.||++.+.....   ......++.+        .+.+.++++..+
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~--------R~~i~~~le~~v   72 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQF--------RQELLKYLEHFL   72 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHH--------HHHHHHHHHHHH
Confidence            368999999999999999987775      34789999886443321   1112221111        145555555544


Q ss_pred             HhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccC
Q 030176           94 EESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVR  148 (182)
Q Consensus        94 ~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r  148 (182)
                      .... .+..+...+. ...-+..+...+. +-.++||++++.+.+..|+..+...|
T Consensus        73 ~a~~-~g~~~~~~~~~~~~~~~~nv~~L~-~~g~vv~L~as~e~~~~rLi~~~Lsr  126 (340)
T TIGR03575        73 VAVI-NGSELSAPPGKTEGMWEDFVDCLK-EQGLIISSGASEAQGCHSLTKPAVSR  126 (340)
T ss_pred             HHhc-CcccccCCcccchhhhHHHHHHHH-hCCeEEEcCCcHHHHHHHHhHHHHhC
Confidence            4432 2332332111 1222323323332 23478999999999999999765344

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.76  E-value=9.3e-09  Score=90.99  Aligned_cols=117  Identities=17%  Similarity=0.292  Sum_probs=70.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~   75 (182)
                      -+++++++..++|+|++|||||||++.|+   |+...+.|++              +++......+    ...++.+-+.
T Consensus       472 isl~i~~Ge~vaIvG~sGsGKSTLlklL~---gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~  548 (686)
T TIGR03797       472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLL---GFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA  548 (686)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHh
Confidence            35678899999999999999999999999   5444444433              2222221111    1222233233


Q ss_pred             cCCCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EGKIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      -+...+++.+.+.++..     +.. +.+ +..+-++   ....++|+..+++++-.+|+++| ||+|+
T Consensus       549 ~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLi-LDEpT  616 (686)
T TIGR03797       549 GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILL-FDEAT  616 (686)
T ss_pred             cCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            33335555555555432     211 222 2222222   45569999999999988998888 99998

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.76  E-value=1e-08  Score=83.32  Aligned_cols=118  Identities=19%  Similarity=0.281  Sum_probs=65.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HH---HHc---C--------C
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AE---IKS---G--------S   64 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~---~~~---~--------~   64 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |+...+.|.+..              ..   ...   .        .
T Consensus        39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~  115 (331)
T PRK15079         39 GVTLRLYEGETLGVVGESGCGKSTFARAII---GLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRM  115 (331)
T ss_pred             eEEEEEcCCCEEEEECCCCCCHHHHHHHHH---CCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCC
Confidence            446678999999999999999999999999   443333332211              00   000   0        0


Q ss_pred             hhhHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCCCcEEEeCC----CCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           65 ENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEESGNDKFLIDGF----PRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        65 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~ildg~----~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .....+...+.. ....+.+...+.+.+.+..-....-+++.+    ...+.|+..+++++..+|+++| +|+|+
T Consensus       116 tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli-lDEPt  189 (331)
T PRK15079        116 TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLII-CDEPV  189 (331)
T ss_pred             CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            111111111111 111233333333344443322111123433    4459999999999999998888 99998

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.75  E-value=1.3e-09  Score=94.70  Aligned_cols=115  Identities=16%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++..++|+|++|||||||++.|...+    ...|++              +++......+    ...++.+-+.-
T Consensus       370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~  445 (588)
T PRK11174        370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLL  445 (588)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhc
Confidence            4567899999999999999999999998444    233332              2222221111    12222332333


Q ss_pred             C-CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G-KIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~-~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      + ...+++.+.+.++..     +.+ +++ +..+-++   ....++|+..++|++-.+|+++| ||+|+
T Consensus       446 g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Ili-LDE~T  513 (588)
T PRK11174        446 GNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLL-LDEPT  513 (588)
T ss_pred             CCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            3 235566655555432     222 222 2222222   45569999999999988999888 99987

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.75  E-value=2.1e-08  Score=76.30  Aligned_cols=31  Identities=26%  Similarity=0.467  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          20 INISISAGEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3567789999999999999999999999943

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.75  E-value=1.4e-08  Score=83.13  Aligned_cols=117  Identities=20%  Similarity=0.271  Sum_probs=67.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhh-----------HHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENG-----------TMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~-----------~~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|.+..+....      ....+           .+..+.+..
T Consensus        23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~   99 (353)
T TIGR03265        23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIA---GLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAY   99 (353)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHH
Confidence            35667889999999999999999999999   76555555432211000      00001           111111111


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      +   ...+.....+.+.+.+..-+-.. .++.    ....++|+..+++++..+|++++ ||+|..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~~P~llL-LDEP~s  163 (353)
T TIGR03265       100 GLKNRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLL-LDEPLS  163 (353)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCcc
Confidence            1   11222222333344443322112 2333    34559999999999999998777 999983

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.75  E-value=1e-08  Score=77.43  Aligned_cols=117  Identities=15%  Similarity=0.118  Sum_probs=62.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~   74 (182)
                      +-++.+.++.+++|+|++|||||||.+.|+   |....+.|.+..             .......+     ......+.+
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   94 (201)
T cd03231          18 GLSFTLAAGEALQVTGPNGSGKTTLLRILA---GLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL   94 (201)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHH
Confidence            335677899999999999999999999999   443333332211             11000000     001111111


Q ss_pred             HcC-CCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KEG-KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~~-~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ... .....+.+.+++...-.....+. ....++..++|+..+++++..+|+++| +|+|+
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~lll-lDEPt  153 (201)
T cd03231          95 RFWHADHSDEQVEEALARVGLNGFEDR-PVAQLSAGQQRRVALARLLLSGRPLWI-LDEPT  153 (201)
T ss_pred             HhhcccccHHHHHHHHHHcCChhhhcC-chhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            111 11112222222222111100011 123456679999999999998998777 99997

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.74  E-value=3.1e-08  Score=75.28  Aligned_cols=30  Identities=33%  Similarity=0.466  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G   49 (211)
T cd03225          20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNG   49 (211)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            356778999999999999999999999994

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.74  E-value=1.6e-08  Score=76.84  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=60.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~~   75 (182)
                      -++++.++ +++|+|++|||||||++.|+   |+...+.|.+..             .......+     ......+.+.
T Consensus        19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~   94 (211)
T cd03264          19 VSLTLGPG-MYGLLGPNGAGKTTLMRILA---TLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLD   94 (211)
T ss_pred             eeEEEcCC-cEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHH
Confidence            35666778 99999999999999999999   543333332211             11110000     0001111110


Q ss_pred             c---CCCCCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 E---GKIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~---~~~~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .   ....+.+...+.+.+.+..-+-..   .....++..++|+..+++++..+|++++ +|+|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll-lDEPt  158 (211)
T cd03264          95 YIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI-VDEPT  158 (211)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            0   000111111122222222211101   1123355669999999999999998888 99997

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.74  E-value=2.7e-08  Score=75.71  Aligned_cols=117  Identities=16%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------------HHHHcCChh-----hHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------------AEIKSGSEN-----GTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------------~~~~~~~~~-----~~~~~   71 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |....+.|++..                 .......+.     .....
T Consensus        21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   97 (214)
T TIGR02673        21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLY---GALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVY   97 (214)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHH
Confidence            35678899999999999999999999999   543333333211                 111100000     01111


Q ss_pred             HHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+...   .........+.+.+.+..-.-...   ....+...+.|+..+++++..+|+++| ||+|+
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll-LDEPt  165 (214)
T TIGR02673        98 ENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL-ADEPT  165 (214)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE-EeCCc
Confidence            111100   001111112222333322111111   122355669999999999988998777 99998

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.74  E-value=1.5e-08  Score=81.52  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=65.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHc--C---ChhhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKS--G---SENGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~--~---~~~~~~~~~~~~   75 (182)
                      -++.+.++.+++|.||+||||||+.+.|+   |....+.|++..             .....  +   ........+.+.
T Consensus        26 vsl~i~~Gei~gllGpNGaGKSTLl~~l~---Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~  102 (306)
T PRK13537         26 LSFHVQRGECFGLLGPNGAGKTTTLRMLL---GLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLL  102 (306)
T ss_pred             ceEEEeCCcEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHH
Confidence            35677899999999999999999999999   544444433211             11110  0   000111112111


Q ss_pred             ---cCCCCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 ---EGKIVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ---~~~~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                         .....+.......+.+.+..-+.   ...-+..+...++|+..+++++..+|+++| ||+|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll-LDEPt  166 (306)
T PRK13537        103 VFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV-LDEPT  166 (306)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE-EeCCC
Confidence               00112222222222333322110   111134566779999999999999998777 99998

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.74  E-value=1.4e-08  Score=74.88  Aligned_cols=117  Identities=20%  Similarity=0.305  Sum_probs=67.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhHHHHHH-------HHcCCC---
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGTMIQNM-------IKEGKI---   79 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~~~~~~-------~~~~~~---   79 (182)
                      ..++.+.+++|.||+|||||||.+.+|   ||.....|.++-...+.      ..+..+.+++-       +..+..   
T Consensus        20 l~v~~ge~vAi~GpSGaGKSTLLnLIA---GF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl   96 (231)
T COG3840          20 LTVPAGEIVAILGPSGAGKSTLLNLIA---GFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL   96 (231)
T ss_pred             EeecCCcEEEEECCCCccHHHHHHHHH---hccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence            356889999999999999999999999   88777776664433331      12334444431       111100   


Q ss_pred             CC----HHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           80 VP----SEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        80 ~~----~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                      .|    .....+.++..+.+.+-.++ .+.    ....++|+..+++.+..+--+++ ||+|+..+
T Consensus        97 ~P~LkL~a~~r~~v~~aa~~vGl~~~-~~RLP~~LSGGqRQRvALARclvR~~PilL-LDEPFsAL  160 (231)
T COG3840          97 SPGLKLNAEQREKVEAAAAQVGLAGF-LKRLPGELSGGQRQRVALARCLVREQPILL-LDEPFSAL  160 (231)
T ss_pred             CcccccCHHHHHHHHHHHHHhChhhH-hhhCccccCchHHHHHHHHHHHhccCCeEE-ecCchhhc
Confidence            01    12222333333333221122 333    33459999999988744322444 99998543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.74  E-value=5.9e-09  Score=76.83  Aligned_cols=104  Identities=15%  Similarity=0.261  Sum_probs=58.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |....+.|.+.................  .-+....+...   ....
T Consensus        20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~--~i~~~~~~~~~---~~~t   91 (171)
T cd03228          20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLL---RLYDPTSGEILIDGVDLRDLDLESLRK--NIAYVPQDPFL---FSGT   91 (171)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHH---cCCCCCCCEEEECCEEhhhcCHHHHHh--hEEEEcCCchh---ccch
Confidence            346678899999999999999999999999   554444444322110000000000000  00000000000   0000


Q ss_pred             HHhcCCCcEEEeC-CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           93 MEESGNDKFLIDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        93 l~~~~~~~~ildg-~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .         .|. ++..++++..+.+++..+|++++ +|+|+
T Consensus        92 ~---------~e~lLS~G~~~rl~la~al~~~p~lll-lDEP~  124 (171)
T cd03228          92 I---------RENILSGGQRQRIAIARALLRDPPILI-LDEAT  124 (171)
T ss_pred             H---------HHHhhCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence            0         011 55678899999999988998777 99998

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.74  E-value=3.7e-08  Score=75.74  Aligned_cols=117  Identities=17%  Similarity=0.200  Sum_probs=63.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-------HHcCChhhHHHHHHHHcC---CCCCHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-------IKSGSENGTMIQNMIKEG---KIVPSE   83 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~   83 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|++..+.       .........+..+.+...   .....+
T Consensus        41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~  117 (224)
T cd03220          41 VSFEVPRGERIGLIGRNGAGKSTLLRLLA---GIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRK  117 (224)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHH
Confidence            35678899999999999999999999999   54433333321110       000000011111111000   011112


Q ss_pred             HHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           84 VTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        84 ~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...+.+.+.+....-.   ...+..++..++|+..+++++..+|+++| +|+|+
T Consensus       118 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll-lDEP~  170 (224)
T cd03220         118 EIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILL-IDEVL  170 (224)
T ss_pred             HHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            2222222222221100   11123456679999999999988998887 99998

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.74  E-value=7.5e-09  Score=80.73  Aligned_cols=113  Identities=16%  Similarity=0.161  Sum_probs=60.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------cCChhhHHHHHHHHcC---CCCCHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-------SGSENGTMIQNMIKEG---KIVPSEVTI   86 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~   86 (182)
                      .+.++.+++|+|++|||||||++.|+   |....+.|.+..+...       ..........+.+...   .........
T Consensus        21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~---G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~   97 (246)
T cd03237          21 SISESEVIGILGPNGIGKTTFIKMLA---GVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT   97 (246)
T ss_pred             CcCCCCEEEEECCCCCCHHHHHHHHh---CCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence            45678999999999999999999999   6544444444221100       0000011111211110   000111111


Q ss_pred             HHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        87 ~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +++...-.....+ .-+..++..+.|+..+++++..+|++++ +|+|+
T Consensus        98 ~~l~~l~l~~~~~-~~~~~LSgGe~qrv~iaraL~~~p~lll-lDEPt  143 (246)
T cd03237          98 EIAKPLQIEQILD-REVPELSGGELQRVAIAACLSKDADIYL-LDEPS  143 (246)
T ss_pred             HHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            2222110000000 0123456679999999999999998887 99998

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.74  E-value=2.1e-08  Score=76.23  Aligned_cols=30  Identities=43%  Similarity=0.499  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03262          19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINL   48 (213)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999993

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.74  E-value=6.3e-09  Score=79.09  Aligned_cols=118  Identities=18%  Similarity=0.218  Sum_probs=64.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHc--CC---hhhHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKS--GS---ENGTMIQNMIK   75 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~--~~---~~~~~~~~~~~   75 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |....+.|.+..+.            ...  +.   ..+....+.+.
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~---gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~   92 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIA---GFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG   92 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence            456778999999999999999999999999   54333333321110            000  00   00112222222


Q ss_pred             cCCC--CC-HHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EGKI--VP-SEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~~~--~~-~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ....  .. .....+.+.+.+...+-..   .....++..++|+..+++++..+|+++| +|+|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll-lDEP~  156 (211)
T cd03298          93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL-LDEPF  156 (211)
T ss_pred             cccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            1110  00 0111112222222211100   1123466679999999999988998877 99998

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.74  E-value=2.6e-08  Score=75.34  Aligned_cols=119  Identities=21%  Similarity=0.248  Sum_probs=66.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH--c-CC-hhhHHHHHHHHcCCCCCHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK--S-GS-ENGTMIQNMIKEGKIVPSEVTIK   87 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~   87 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |....+.|.+..+. ..  . .. -...+..+.+........+...+
T Consensus        23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~---G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~   99 (204)
T cd03250          23 DINLEVPKGELVAIVGPVGSGKSSLLSALL---GELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEK   99 (204)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHh---CcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHH
Confidence            446678999999999999999999999999   65555555443221 00  0 00 00111112121121122222222


Q ss_pred             HHH-----HHHHhc-CCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           88 LLQ-----KAMEES-GNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        88 ~l~-----~~l~~~-~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      .+.     +.+... .+....++    .++..++|+..+++++..+|++++ +|+|+.
T Consensus       100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~lll-lDEP~~  156 (204)
T cd03250         100 VIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYL-LDDPLS  156 (204)
T ss_pred             HHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EeCccc
Confidence            211     111111 11111122    345669999999999999998887 999983

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.74  E-value=2.1e-08  Score=76.60  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=27.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        22 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             eeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34567889999999999999999999999943

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.73  E-value=1.4e-09  Score=76.91  Aligned_cols=30  Identities=27%  Similarity=0.427  Sum_probs=26.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++.+.++.+++|+|++|||||||.+.|+..
T Consensus         5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen    5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEcCCCEEEEEccCCCccccceeeeccc
Confidence            456678999999999999999999999943

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.73  E-value=7e-09  Score=90.07  Aligned_cols=117  Identities=17%  Similarity=0.279  Sum_probs=69.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~   75 (182)
                      -+++++++..++|+|++|||||||++.|+..+   .++.|++              +++.....++    ...++.+-+.
T Consensus       362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~---~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~  438 (582)
T PRK11176        362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFY---DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA  438 (582)
T ss_pred             ceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHh
Confidence            35567899999999999999999999999554   2332222              1222221111    1222333233


Q ss_pred             cCC--CCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EGK--IVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~~--~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.  ...++.+.+.++..     +.. +++ +..+-++   .+..+.|+..+++++-.+|+++| +|+|+
T Consensus       439 ~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili-lDEpt  508 (582)
T PRK11176        439 YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI-LDEAT  508 (582)
T ss_pred             cCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE-EECcc
Confidence            221  24555555554432     211 122 2222221   45569999999999988898888 99997

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.73  E-value=8.1e-09  Score=78.17  Aligned_cols=115  Identities=15%  Similarity=0.184  Sum_probs=62.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------HH----HH--cCCh----hhHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------AE----IK--SGSE----NGTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------~~----~~--~~~~----~~~~~~~~~~~   76 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |....+.|.+..       ..    ..  .+..    ......+.+..
T Consensus        19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~   95 (205)
T cd03226          19 LSLDLYAGEIIALTGKNGAGKTTLAKILA---GLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLL   95 (205)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhh
Confidence            35677899999999999999999999999   543333332210       00    00  0000    00111111111


Q ss_pred             CC-CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK-IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~-~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .. ....+  .+.+.+.+..-+-...   ....++..++|+..+++++..+|++++ +|+|+
T Consensus        96 ~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-lDEPt  154 (205)
T cd03226          96 GLKELDAG--NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI-FDEPT  154 (205)
T ss_pred             hhhhcCcc--HHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEE-EeCCC
Confidence            10 00100  0112222222111111   123455679999999999988998777 99998

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.73  E-value=1.7e-08  Score=82.91  Aligned_cols=116  Identities=16%  Similarity=0.257  Sum_probs=66.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH--HHHHHHHHHc------CChh-----------hHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKS------GSEN-----------GTMIQNMI   74 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~--~di~~~~~~~------~~~~-----------~~~~~~~~   74 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.  |++..+....      ....           .....+.+
T Consensus        24 vsl~i~~Ge~~~llGpsGsGKSTLLr~ia---Gl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl  100 (362)
T TIGR03258        24 LSLEIEAGELLALIGKSGCGKTTLLRAIA---GFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV  100 (362)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHH
Confidence            35567889999999999999999999999   7655555  4432111000      0000           11111111


Q ss_pred             Hc---CCCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KE---GKIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~---~~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..   ....+.......+.+.+..-.-... .+.    ....++|+..+++++..+|++++ ||+|.
T Consensus       101 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSgGq~QRvaLARAL~~~P~llL-LDEP~  165 (362)
T TIGR03258       101 AFGLRAQKMPKADIAERVADALKLVGLGDA-AAHLPAQLSGGMQQRIAIARAIAIEPDVLL-LDEPL  165 (362)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhcCCCch-hhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCcc
Confidence            10   0112333233333444433221111 333    44569999999999999998777 99998

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.73  E-value=4.9e-09  Score=77.41  Aligned_cols=103  Identities=14%  Similarity=0.253  Sum_probs=58.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   93 (182)
                      .++.+.++.+++|+|++|||||||++.|+   |....+.|.+..+..............   .-...+.+.  .+...  
T Consensus        21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~---~i~~~~q~~--~~~~~--   90 (173)
T cd03246          21 VSFSIEPGESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGD---HVGYLPQDD--ELFSG--   90 (173)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHH---hccCCCCCeEEECCEEcccCCHHHHHh---heEEECCCC--ccccC--
Confidence            35677899999999999999999999999   544444444322110000000000000   000000000  00000  


Q ss_pred             HhcCCCcEEEeC-CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           94 EESGNDKFLIDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        94 ~~~~~~~~ildg-~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                             .+.+. ++..+.|+..+++++..+|+++| +|+|+
T Consensus        91 -------tv~~~lLS~G~~qrv~la~al~~~p~~ll-lDEPt  124 (173)
T cd03246          91 -------SIAENILSGGQRQRLGLARALYGNPRILV-LDEPN  124 (173)
T ss_pred             -------cHHHHCcCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence                   00011 55678999999999988998777 99998

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.73  E-value=1.4e-08  Score=77.56  Aligned_cols=118  Identities=19%  Similarity=0.222  Sum_probs=63.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~   74 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |....+.|++..             .....-.+     ......+.+
T Consensus        23 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   99 (218)
T cd03266          23 GVSFTVKPGEVTGLLGPNGAGKTTTLRMLA---GLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENL   99 (218)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHH
Confidence            335677899999999999999999999999   543333332211             10100000     001111111


Q ss_pred             H---cCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 K---EGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~---~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .   .......+...+.+.+.+..-.-...   -....+..++|+..+++++..+|++++ +|+|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill-lDEPt  164 (218)
T cd03266         100 EYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL-LDEPT  164 (218)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence            0   00011111122222333322111011   122345669999999999988998777 99998

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.72  E-value=1.9e-08  Score=76.95  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=62.8

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~   74 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |....+.|.+..             .......+     ......+.+
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l   94 (220)
T cd03265          18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLT---TLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENL   94 (220)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHH
Confidence            345677899999999999999999999999   543333332211             00000000     001111111


Q ss_pred             Hc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..   ..........+.+.+.+..-.-...   -+..++..++|+..+++++..+|++++ +|+|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll-lDEPt  159 (220)
T cd03265          95 YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF-LDEPT  159 (220)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            00   0011111111222222322111111   122355679999999999988998777 99998

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.72  E-value=1.5e-07  Score=73.36  Aligned_cols=32  Identities=34%  Similarity=0.342  Sum_probs=27.8

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (250)
T PRK11264         21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL   52 (250)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34567789999999999999999999999943

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.72  E-value=1.1e-08  Score=77.96  Aligned_cols=117  Identities=18%  Similarity=0.275  Sum_probs=63.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH---------HHHHc---CCh----hhHHHHHHHHcC
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR---------AEIKS---GSE----NGTMIQNMIKEG   77 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~---------~~~~~---~~~----~~~~~~~~~~~~   77 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|++..         .....   ...    ......+.+...
T Consensus        18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~   94 (213)
T cd03235          18 VSFEVKPGEFLAIVGPNGAGKSTLLKAIL---GLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMG   94 (213)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHc---CCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhc
Confidence            35678899999999999999999999999   543333333211         11110   000    011222222111


Q ss_pred             CC-------CCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           78 KI-------VPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        78 ~~-------~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..       ...+...+.+.+.+..-+-...   -+..++..++|+..+++++..+|+++| +|+|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-lDEPt  160 (213)
T cd03235          95 LYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL-LDEPF  160 (213)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            10       0111111222222222110000   123455669999999999988998887 99998

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.72  E-value=1e-08  Score=83.97  Aligned_cols=116  Identities=19%  Similarity=0.244  Sum_probs=65.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChh-----------hHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSEN-----------GTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~-----------~~~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+....      ....           .....+.+..
T Consensus        21 isl~i~~Ge~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~   97 (353)
T PRK10851         21 ISLDIPSGQMVALLGPSGSGKTTLLRIIA---GLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAF   97 (353)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHh
Confidence            35667889999999999999999999999   65444444432211000      0000           1111111111


Q ss_pred             CC-------CCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK-------IVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~-------~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.       ..+.+...+.+.+.+..-.-..+ .+    .....++|+..+++++..+|++++ +|+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGq~QRvalArAL~~~P~llL-LDEP~  164 (353)
T PRK10851         98 GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-ADRYPAQLSGGQKQRVALARALAVEPQILL-LDEPF  164 (353)
T ss_pred             hhhhcccccCCCHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            10       11222223333344433211111 23    344569999999999999998777 99998

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.72  E-value=9.1e-09  Score=91.36  Aligned_cols=116  Identities=17%  Similarity=0.321  Sum_probs=69.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++..++|+|++|||||||++.|+..+   ..+.|.+              +++.....++    ...++.+-+.-
T Consensus       499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l  575 (710)
T TIGR03796       499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLY---QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTL  575 (710)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhC
Confidence            4567899999999999999999999999544   2333222              2222221111    12222222222


Q ss_pred             C-CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G-KIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~-~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      + ...+++.+.+.++..     +.+ +.+ +..+-++   ...+++|+..+++++..+|+++| ||+|+
T Consensus       576 ~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ili-LDEpt  643 (710)
T TIGR03796       576 WDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILI-LDEAT  643 (710)
T ss_pred             CCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEE-EECcc
Confidence            2 234555555554432     222 222 2332222   45569999999999988998888 99998

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.72  E-value=1.3e-08  Score=77.38  Aligned_cols=117  Identities=21%  Similarity=0.288  Sum_probs=63.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH------------HHHcCChh-----hHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA------------EIKSGSEN-----GTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~------------~~~~~~~~-----~~~~~~~~~~   76 (182)
                      -++++.++.+++|+|++|||||||++.|+   |+...+.|.+..+            ......+.     .....+.+..
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~   95 (213)
T cd03259          19 LSLTVEPGEFLALLGPSGCGKTTLLRLIA---GLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAF   95 (213)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHh
Confidence            35678899999999999999999999999   5433333322110            00000000     0111111110


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .   .........+.+.+.+..-+-...   ....++..++|+..+++++..+|+++| +|+|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll-lDEPt  158 (213)
T cd03259          96 GLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL-LDEPL  158 (213)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            0   011111112222333332111111   122345569999999999988998777 99998

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.72  E-value=9.2e-08  Score=70.63  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      ++.+++|+||+|+|||||++.|.+..++
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l   30 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKL   30 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCe
Confidence            6889999999999999999999988753

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.72  E-value=1.5e-08  Score=83.65  Aligned_cols=116  Identities=17%  Similarity=0.259  Sum_probs=65.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhH-----------HHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGT-----------MIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~-----------~~~~~~~~   76 (182)
                      -++.+.++.+++|.||+|||||||++.|+   |+...+.|.+..+....      ....+.           .+.+.+..
T Consensus        33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~Ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~  109 (375)
T PRK09452         33 LDLTINNGEFLTLLGPSGCGKTTVLRLIA---GFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAF  109 (375)
T ss_pred             eEEEEeCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHH
Confidence            35667889999999999999999999999   66555544432211100      000111           11111111


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +   ...+.....+.+.+.+..-.-.. .++.    ....++|+..+++++..+|++++ +|+|.
T Consensus       110 ~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LSgGq~QRVaLARaL~~~P~llL-LDEP~  172 (375)
T PRK09452        110 GLRMQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQRVAIARAVVNKPKVLL-LDESL  172 (375)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            1   11222222223333333211111 1333    44569999999999999998777 99998

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.72  E-value=4.1e-09  Score=93.53  Aligned_cols=116  Identities=21%  Similarity=0.263  Sum_probs=69.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++..++|+|++|||||||++.|+..+   ..+.|++              +++......+    ...++.+-+.-
T Consensus       494 sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l  570 (708)
T TIGR01193       494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF---QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLL  570 (708)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhccC---CCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhc
Confidence            5567889999999999999999999999544   2332222              2222221111    12233333332


Q ss_pred             C--CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G--KIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~--~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +  ...+++.+.+.++..     +.. +.+ +..+-++   ....++|+..+++++..+|+++| ||+|+
T Consensus       571 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ili-LDE~T  639 (708)
T TIGR01193       571 GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI-LDEST  639 (708)
T ss_pred             cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEE-EeCcc
Confidence            2  234555555554432     222 222 2332222   45669999999999988998888 99998

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.72  E-value=2e-08  Score=76.89  Aligned_cols=117  Identities=17%  Similarity=0.199  Sum_probs=63.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------HHcCCh-----hhHHHHHHHHc---
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------IKSGSE-----NGTMIQNMIKE---   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~~~~~~-----~~~~~~~~~~~---   76 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|.+..+.         .....+     ......+.+..   
T Consensus        23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~   99 (220)
T cd03293          23 ISLSVEEGEFVALVGPSGCGKSTLLRIIA---GLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLE   99 (220)
T ss_pred             eeEEEeCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHH
Confidence            35677899999999999999999999999   54433444332110         000000     00011111110   


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GKIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~~~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..........+.+.+.+..-+-..   .....++..++|+..+++++..+|+++| +|+|+
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll-LDEPt  159 (220)
T cd03293         100 LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL-LDEPF  159 (220)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-ECCCC
Confidence            001111111222233332211100   1123456679999999999988998887 99998

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.72  E-value=1.2e-08  Score=73.26  Aligned_cols=81  Identities=20%  Similarity=0.247  Sum_probs=57.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (182)
                      +-++...++.+++|+|++|||||||++.|+   |....+.|.+..+.                       .         
T Consensus        18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~~-----------------------~---------   62 (144)
T cd03221          18 DISLTINPGDRIGLVGRNGAGKSTLLKLIA---GELEPDEGIVTWGS-----------------------T---------   62 (144)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHc---CCCCCCceEEEECC-----------------------e---------
Confidence            335677899999999999999999999999   65444443331111                       0         


Q ss_pred             HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                           ....++..++..+.++..+.+++..+|++++ +|+|+
T Consensus        63 -----~~i~~~~~lS~G~~~rv~laral~~~p~ill-lDEP~   98 (144)
T cd03221          63 -----VKIGYFEQLSGGEKMRLALAKLLLENPNLLL-LDEPT   98 (144)
T ss_pred             -----EEEEEEccCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence                 0112222366678888899999888898777 99997

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.71  E-value=1.7e-08  Score=87.88  Aligned_cols=120  Identities=17%  Similarity=0.208  Sum_probs=70.3

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCCh----hhHHHHHHHHcCC
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSE----NGTMIQNMIKEGK   78 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~----~~~~~~~~~~~~~   78 (182)
                      -+++++++..++|+|++|||||||++.|++.+.    -..++..++       +++....-++    ...++.+-+.-+.
T Consensus       360 i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~  439 (592)
T PRK10790        360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR  439 (592)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC
Confidence            356678999999999999999999999995552    122222111       2222221111    1122333233333


Q ss_pred             CCCHHHHHHHHHHHH-----Hh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 IVPSEVTIKLLQKAM-----EE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 ~~~~~~~~~~l~~~l-----~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+++.+.++++...     .. ++ .+..+-++   ++..+.|+..+++++..+|+++| +|+|+
T Consensus       440 ~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ill-lDEpt  504 (592)
T PRK10790        440 DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILI-LDEAT  504 (592)
T ss_pred             CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE-EeCCc
Confidence            455666555554322     11 11 12222221   44569999999999988898777 99997

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.71  E-value=1.6e-08  Score=76.94  Aligned_cols=117  Identities=19%  Similarity=0.235  Sum_probs=62.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHcCCh-----hhHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKSGSE-----NGTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~~~~-----~~~~~~~~~~~   76 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|.+..+.            .....+     ......+.+..
T Consensus        19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~   95 (213)
T cd03301          19 LNLDIADGEFVVLLGPSGCGKTTTLRMIA---GLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAF   95 (213)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHH
Confidence            35677899999999999999999999999   44333333221100            000000     00011111110


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .   .....+...+.+.+.+..-+-...   ....++..++|+..+++++..+|++++ +|+|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll-lDEPt  158 (213)
T cd03301          96 GLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL-MDEPL  158 (213)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            0   011222222222333322111111   122355669999999999988998777 99998

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.71  E-value=5.8e-09  Score=78.90  Aligned_cols=32  Identities=31%  Similarity=0.375  Sum_probs=27.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             ceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            33567789999999999999999999999943

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.71  E-value=2.3e-08  Score=82.12  Aligned_cols=117  Identities=18%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------H----HHHcCC-----hhhHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------A----EIKSGS-----ENGTM   69 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~----~~~~~~-----~~~~~   69 (182)
                      +-++++.++.+++|+|++|||||||.+.|+   |+...+.|+++.              .    ......     ....+
T Consensus        11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~---Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T   87 (363)
T TIGR01186        11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLN---RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT   87 (363)
T ss_pred             eeEEEEcCCCEEEEECCCCChHHHHHHHHh---CCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence            346678899999999999999999999999   544333332211              0    001000     00011


Q ss_pred             HHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           70 IQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        70 ~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+.+..+   ...+.+...+.+.+.+...+-..+ ++.    +...++|+..+++++..+|++++ +|+|+
T Consensus        88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-~~~~p~~LSGGq~QRV~lARAL~~~p~iLL-lDEP~  157 (363)
T TIGR01186        88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-EHRYPDELSGGMQQRVGLARALAAEPDILL-MDEAF  157 (363)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-hhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            11111100   112222223333344433221111 333    34569999999999999998777 99998

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=6.8e-09  Score=89.81  Aligned_cols=120  Identities=19%  Similarity=0.250  Sum_probs=67.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecH---HHH----HHHHHHcCC----hhhHHHHHHHHcCC
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSA---GDL----LRAEIKSGS----ENGTMIQNMIKEGK   78 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~---~di----~~~~~~~~~----~~~~~~~~~~~~~~   78 (182)
                      -+++++++.+++++||+|+||||+++.|.+-|.    -.-+|.   .++    ++..+....    -.+.++.+-+.-|.
T Consensus       487 lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~  566 (716)
T KOG0058|consen  487 LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL  566 (716)
T ss_pred             ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC
Confidence            356789999999999999999999998876552    112222   222    222222111    12333344344443


Q ss_pred             C-CCHHHHHHHHHHH-----HHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 I-VPSEVTIKLLQKA-----MEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 ~-~~~~~~~~~l~~~-----l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      . ..++.+....+..     +.+ +++-...+..    ....++|+.++++++-.+|.++| ||+-+
T Consensus       567 ~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLI-LDEAT  632 (716)
T KOG0058|consen  567 DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLI-LDEAT  632 (716)
T ss_pred             CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEE-Eechh
Confidence            3 2334333333221     111 1111111221    23459999999999988998887 88865

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.71  E-value=3e-08  Score=75.28  Aligned_cols=117  Identities=17%  Similarity=0.257  Sum_probs=62.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH------HHHc-------CC--hhhHHHHHHHHc--
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA------EIKS-------GS--ENGTMIQNMIKE--   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~------~~~~-------~~--~~~~~~~~~~~~--   76 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|++..+      ....       ..  .......+.+..  
T Consensus        19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~   95 (210)
T cd03269          19 ISFSVEKGEIFGLLGPNGAGKTTTIRMIL---GIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLA   95 (210)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHH
Confidence            36678899999999999999999999999   5433333322110      0000       00  001111111110  


Q ss_pred             -CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 -GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 -~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       ....+.....+.+.+.+..-+-...   -...+...++++..+++++..+|++++ +|+|+
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll-lDEP~  156 (210)
T cd03269          96 QLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI-LDEPF  156 (210)
T ss_pred             HHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence             0111111122222333322111111   122355669999999999988998777 99998

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.71  E-value=2.3e-08  Score=73.86  Aligned_cols=118  Identities=14%  Similarity=0.272  Sum_probs=70.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------------------------cCChhhHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-------------------------SGSENGTM   69 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-------------------------~~~~~~~~   69 (182)
                      ++....+..++|.|.+|||||||++.|+   |+.....|+++.+...                         +...+|..
T Consensus        33 SFtL~~~QTlaiIG~NGSGKSTLakMla---Gmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqi  109 (267)
T COG4167          33 SFTLREGQTLAIIGENGSGKSTLAKMLA---GMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQI  109 (267)
T ss_pred             EEEecCCcEEEEEccCCCcHhHHHHHHh---cccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhH
Confidence            3455677889999999999999999999   8776666655332211                         11122333


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHh----cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176           70 IQNMIKEGKIVPSEVTIKLLQKAMEE----SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (182)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~  136 (182)
                      ++.-+..+-.+..+...+.+.+-+..    +++..+-+.-....++|+.++++++..+|.++| .|+....
T Consensus       110 Ld~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iII-aDeAl~~  179 (267)
T COG4167         110 LDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIII-ADEALAS  179 (267)
T ss_pred             hcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEE-ehhhhhh
Confidence            33333333333333333333443333    333333344445679999999999988998777 6554433

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.71  E-value=2.8e-08  Score=76.69  Aligned_cols=31  Identities=26%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567889999999999999999999999943

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.70  E-value=9.6e-09  Score=84.63  Aligned_cols=117  Identities=19%  Similarity=0.237  Sum_probs=65.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHc--CC-h--hhHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKS--GS-E--NGTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~--~~-~--~~~~~~~~~~~   76 (182)
                      -++++.++.+++|.|++|||||||++.|+   |+...+.|.+..+.            ...  +. .  ......+.+..
T Consensus        22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~ia---Gl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~   98 (369)
T PRK11000         22 INLDIHEGEFVVFVGPSGCGKSTLLRMIA---GLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSF   98 (369)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHh
Confidence            35677899999999999999999999999   65444444332110            000  00 0  01111111111


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +   ...+.+...+.+.+.+..-.-...   ....+...++|+..+++++..+|++++ ||+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLL-LDEPt  161 (369)
T PRK11000         99 GLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-LDEPL  161 (369)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            1   112222222233333333211111   122345569999999999999998777 99998

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=1.2e-08  Score=84.25  Aligned_cols=118  Identities=16%  Similarity=0.280  Sum_probs=67.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhH-----------HHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGT-----------MIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~-----------~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|.+..+....      ....+.           ...+.+..
T Consensus        38 vsl~i~~Ge~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~  114 (377)
T PRK11607         38 VSLTIYKGEIFALLGASGCGKSTLLRMLA---GFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAF  114 (377)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHH
Confidence            35667889999999999999999999999   66555554432111000      000111           11111111


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~  136 (182)
                      +   ...+.....+.+.+.+..-.-.. ..+.    ....++|+..+++++..+|++++ ||+|...
T Consensus       115 ~l~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL-LDEP~s~  179 (377)
T PRK11607        115 GLKQDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALARSLAKRPKLLL-LDEPMGA  179 (377)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCccc
Confidence            1   11222223333344443322111 1333    44559999999999999998777 9999833

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.70  E-value=6.6e-09  Score=76.27  Aligned_cols=104  Identities=20%  Similarity=0.292  Sum_probs=63.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |....+.|.+.....   ...+...++     ...+..    -+.+.
T Consensus        19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~~~---~~i~~~~q~-----~~~~~~----tv~~n   83 (166)
T cd03223          19 DLSFEIKPGDRLLITGPSGTGKSSLFRALA---GLWPWGSGRIGMPEG---EDLLFLPQR-----PYLPLG----TLREQ   83 (166)
T ss_pred             cCeEEECCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCC---ceEEEECCC-----Cccccc----cHHHH
Confidence            335677899999999999999999999999   655555555433210   001110000     001100    11111


Q ss_pred             HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                      +...     ....++..++++..+++++..+|++++ +|+|+..+
T Consensus        84 l~~~-----~~~~LS~G~~~rv~laral~~~p~~ll-lDEPt~~L  122 (166)
T cd03223          84 LIYP-----WDDVLSGGEQQRLAFARLLLHKPKFVF-LDEATSAL  122 (166)
T ss_pred             hhcc-----CCCCCCHHHHHHHHHHHHHHcCCCEEE-EECCcccc
Confidence            1100     123456679999999999988998887 99998433

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.70  E-value=2.3e-08  Score=77.38  Aligned_cols=117  Identities=14%  Similarity=0.167  Sum_probs=62.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHc---CCh--hhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKS---GSE--NGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~---~~~--~~~~~~~~~~   75 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |....+.|.+..             .....   ...  ......+.+.
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~   96 (236)
T TIGR03864        20 VSFTVRPGEFVALLGPNGAGKSTLFSLLT---RLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLR   96 (236)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHH
Confidence            35677899999999999999999999999   543333332211             00000   000  0111111111


Q ss_pred             cC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..   .........+.+.+.+..-+-...   -...++..+.|+..+++++..+|+++| +|+|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-lDEP~  160 (236)
T TIGR03864        97 YHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLL-LDEPT  160 (236)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            00   111211122222333322111111   122345669999999999988998887 99997

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=5.6e-08  Score=82.49  Aligned_cols=118  Identities=23%  Similarity=0.344  Sum_probs=72.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChh-----hHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSEN-----GTMIQNM   73 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~-----~~~~~~~   73 (182)
                      +-+++++++..++|+|++||||||+.+.|+   |+.....|++              +++......+.     +...++.
T Consensus       339 ~l~~t~~~g~~talvG~SGaGKSTLl~lL~---G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi  415 (559)
T COG4988         339 DLNLTIKAGQLTALVGASGAGKSTLLNLLL---GFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI  415 (559)
T ss_pred             CceeEecCCcEEEEECCCCCCHHHHHHHHh---CcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHh
Confidence            335677899999999999999999999999   5544444433              22222211111     1211222


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHh-----cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEGKIVPSEVTIKLLQKAMEE-----SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~l~~-----~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .-......++.+.+.++.....     +++ +..|-|+   ....+.|+..++|++..++++++ +|+|+
T Consensus       416 ~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l-lDEpT  484 (559)
T COG4988         416 LLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL-LDEPT  484 (559)
T ss_pred             hccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE-ecCCc
Confidence            2222335566666666654332     122 3333332   44569999999999988788777 99987

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.70  E-value=1.6e-08  Score=89.68  Aligned_cols=116  Identities=18%  Similarity=0.282  Sum_probs=69.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChh----hHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSEN----GTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~----~~~~~~~~~~   76 (182)
                      +++++++..++|+|++|||||||++.|+..+   ..+.|++              +++......+.    ..++.+-+.-
T Consensus       485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~  561 (694)
T TIGR03375       485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY---QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIAL  561 (694)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhC
Confidence            4567889999999999999999999999444   3333322              12222211111    2223332333


Q ss_pred             CC-CCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK-IVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~-~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +. ..+++.+.+.++..     +.. +.+ +..+-++   ...+++|+..+++++-.+|+++| ||+|+
T Consensus       562 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ili-LDE~T  629 (694)
T TIGR03375       562 GAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILL-LDEPT  629 (694)
T ss_pred             CCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            32 34555555554432     222 222 2222221   45569999999999988999888 99986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.70  E-value=2.7e-08  Score=75.86  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   59 (214)
T PRK13543         30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAG   59 (214)
T ss_pred             ceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            356678999999999999999999999993

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.70  E-value=1.8e-08  Score=77.10  Aligned_cols=30  Identities=33%  Similarity=0.485  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (222)
T cd03224          19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMG   48 (222)
T ss_pred             eeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999993

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.69  E-value=2.8e-08  Score=75.04  Aligned_cols=116  Identities=12%  Similarity=0.111  Sum_probs=62.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-------------HHHc-----CChhhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-------------EIKS-----GSENGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-------------~~~~-----~~~~~~~~~~~~   74 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |....+.|++..+             ....     .........+.+
T Consensus        19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~   95 (200)
T PRK13540         19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIA---GLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENC   95 (200)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHH
Confidence            345678899999999999999999999999   5443333322111             1000     000011111111


Q ss_pred             HcCC-CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           75 KEGK-IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        75 ~~~~-~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      .... ....+   ..+.+.+..-.....   -+..++..+.++..+++++..+|+++| +|+|+.
T Consensus        96 ~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~li-lDEP~~  156 (200)
T PRK13540         96 LYDIHFSPGA---VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL-LDEPLV  156 (200)
T ss_pred             HHHHhcCcch---HHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEE-EeCCCc
Confidence            1110 00011   112222221111011   122356679999999999988998887 999973

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.69  E-value=3.9e-08  Score=85.08  Aligned_cols=112  Identities=16%  Similarity=0.222  Sum_probs=63.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChhhHHHHHHHHcCC--
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSENGTMIQNMIKEGK--   78 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~~~~~~~~~~~~~--   78 (182)
                      ++.++++..++|+|++||||||+++.|+   |+..++.|++              ++.......+....+.+....+.  
T Consensus       362 s~~i~~G~~~aivG~sGsGKSTl~~ll~---g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~  438 (555)
T TIGR01194       362 DLRIAQGDIVFIVGENGCGKSTLAKLFC---GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGE  438 (555)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccccc
Confidence            4567899999999999999999999999   4333333322              22222221222222222222221  


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCcEE---E------eCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 IVPSEVTIKLLQKAMEESGNDKFL---I------DGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 ~~~~~~~~~~l~~~l~~~~~~~~i---l------dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...++.+.+.++    ..+....+   -      ......++|+..+++++..+|+++| +|+|+
T Consensus       439 ~~~~~~~~~~~~----~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili-lDE~t  498 (555)
T TIGR01194       439 HASLDNAQQYLQ----RLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL-FDEWA  498 (555)
T ss_pred             chhHHHHHHHHH----HcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            111222222222    21111110   1      2244569999999999988999888 99988

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.69  E-value=2.4e-09  Score=79.45  Aligned_cols=104  Identities=18%  Similarity=0.284  Sum_probs=59.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcC-CCCCHH-HHH-HHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIVPSE-VTI-KLL   89 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~l   89 (182)
                      +-++++.++.+++|.|++|||||||++.|+   |....+.|.+..+..    ..... ....... ...+.+ ... .-+
T Consensus        20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~----~~~~~-~~~~~~~i~~~~q~~~~~~~tv   91 (178)
T cd03247          20 NLSLELKQGEKIALLGRSGSGKSTLLQLLT---GDLKPQQGEITLDGV----PVSDL-EKALSSLISVLNQRPYLFDTTL   91 (178)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHh---ccCCCCCCEEEECCE----EHHHH-HHHHHhhEEEEccCCeeecccH
Confidence            346678899999999999999999999999   544444443321100    00000 0000000 000000 000 000


Q ss_pred             HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        90 ~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.         +....+..+.|+..+++++..+|+++| +|+|+
T Consensus        92 ~~~---------i~~~LS~G~~qrv~laral~~~p~~ll-lDEP~  126 (178)
T cd03247          92 RNN---------LGRRFSGGERQRLALARILLQDAPIVL-LDEPT  126 (178)
T ss_pred             HHh---------hcccCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence            110         033455678999999999988998887 99998

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.69  E-value=1.1e-07  Score=71.17  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G   40 (190)
T TIGR01166        11 LNFAAERGEVLALLGANGAGKSTLLLHLNG   40 (190)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356788999999999999999999999993

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=6.3e-08  Score=76.39  Aligned_cols=117  Identities=17%  Similarity=0.308  Sum_probs=63.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHcCChhh------HHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKSGSENG------TMIQNM   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~~~~~~------~~~~~~   73 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|.+..              .....-.+..      ....+.
T Consensus        28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~  104 (269)
T PRK13648         28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMI---GIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYD  104 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHH
Confidence            35677899999999999999999999999   543333332211              1111000000      001111


Q ss_pred             HHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +...   ...+.+...+.+.+.+..-+-...   ....++..+.++..+++++..+|+++| +|+|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-LDEPt  170 (269)
T PRK13648        105 VAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII-LDEAT  170 (269)
T ss_pred             HHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            1100   111222222223333332111111   122345569999999999988999888 99998

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.69  E-value=2.3e-08  Score=80.24  Aligned_cols=117  Identities=12%  Similarity=0.161  Sum_probs=63.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHc--C---ChhhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKS--G---SENGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~--~---~~~~~~~~~~~~   75 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |+...+.|++..             .....  +   ........+.+.
T Consensus        23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~   99 (303)
T TIGR01288        23 LSFTIARGECFGLLGPNGAGKSTIARMLL---GMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL   99 (303)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHH
Confidence            35677899999999999999999999999   543333332211             11100  0   000111111111


Q ss_pred             ---cCCCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 ---EGKIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ---~~~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                         .....+.....+.+.+.+......   ..-+..+...++|+..+++++..+|+++| ||+|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt  163 (303)
T TIGR01288       100 VFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI-LDEPT  163 (303)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence               001122222222222223221100   11123456679999999999988998777 99998

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=1.6e-08  Score=78.02  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=64.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HH--cCC---hhhHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IK--SGS---ENGTMIQNMIK   75 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~--~~~---~~~~~~~~~~~   75 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |....+.|.+..+.            ..  ...   ..+....+.+.
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~   93 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIA---GFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG   93 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence            446778899999999999999999999999   54333333321110            00  000   00112222222


Q ss_pred             cCCC--C-CHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EGKI--V-PSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~~~--~-~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ....  . ..+...+.+.+.+..-+-..   .....++..+.|+..+.+++..+|+++| +|+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-LDEP~  157 (232)
T PRK10771         94 LGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL-LDEPF  157 (232)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            1110  0 00111112222222211101   1123455679999999999988998877 99998

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.69  E-value=1.8e-08  Score=75.70  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=61.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH----------c---C--ChhhHHHHHHHHcC-
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----------S---G--SENGTMIQNMIKEG-   77 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~----------~---~--~~~~~~~~~~~~~~-   77 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|++..+...          .   .  .....+..+.+... 
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~   95 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIA---GIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWS   95 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHH
Confidence            35677899999999999999999999999   5433333332211100          0   0  00001111111000 


Q ss_pred             CCC-CHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176           78 KIV-PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (182)
Q Consensus        78 ~~~-~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~  136 (182)
                      ... ..+.+.+++........ ...-...++..+.++..+.+++..+|++++ +|+|+..
T Consensus        96 ~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~~rl~la~al~~~p~~ll-lDEP~~~  153 (195)
T PRK13541         96 EIYNSAETLYAAIHYFKLHDL-LDEKCYSLSSGMQKIVAIARLIACQSDLWL-LDEVETN  153 (195)
T ss_pred             HhcccHHHHHHHHHHcCCHhh-hccChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCccc
Confidence            000 11111222211110000 000122356679999999999988998777 9999733

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.69  E-value=1.4e-08  Score=78.71  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=63.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HH---cCCh--hhHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IK---SGSE--NGTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~---~~~~--~~~~~~~~~~~   76 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|.+..+.            ..   ....  ......+.+..
T Consensus        21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~   97 (239)
T cd03296          21 VSLDIPSGELVALLGPSGSGKTTLLRLIA---GLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAF   97 (239)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhh
Confidence            35677899999999999999999999999   54333333321111            00   0000  01111111111


Q ss_pred             CC---CC----CHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK---IV----PSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~---~~----~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..   ..    ......+.+.+.+..-.....   .+..++..+.|+..+++++..+|+++| +|+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll-lDEP~  164 (239)
T cd03296          98 GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPF  164 (239)
T ss_pred             hhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            10   00    111111222222322111111   122356679999999999988998777 99998

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.69  E-value=3.5e-08  Score=73.18  Aligned_cols=103  Identities=18%  Similarity=0.128  Sum_probs=57.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (182)
                      +-++++.++.+++|+||+|||||||.+.+...-|-..+... . ...  .            .....+-.+  .+.+...
T Consensus        13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~-~-~~~--~------------~~~~~~~~q--~~~l~~~   74 (176)
T cd03238          13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISF-L-PKF--S------------RNKLIFIDQ--LQFLIDV   74 (176)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCc-c-ccc--c------------cccEEEEhH--HHHHHHc
Confidence            34667899999999999999999999988532232222210 0 000  0            000001111  1222222


Q ss_pred             HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCC--CcEEEEEecCH
Q 030176           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIE--PEFVLFFDCSE  134 (182)
Q Consensus        93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~--~~~vI~ld~~~  134 (182)
                      .........-....+..++++..+.+++..+  |++++ +|+|+
T Consensus        75 ~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llL-lDEPt  117 (176)
T cd03238          75 GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFI-LDEPS  117 (176)
T ss_pred             CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEE-EeCCc
Confidence            1110000001223445689999999999888  98777 99998

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.69  E-value=1.2e-08  Score=75.29  Aligned_cols=101  Identities=19%  Similarity=0.256  Sum_probs=58.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH---HHc-CCCCCHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM---IKE-GKIVPSEVTIKLL   89 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~l   89 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|++..+...... ........   ... ....+...+.+-+
T Consensus        19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~~   94 (173)
T cd03230          19 ISLTVEKGEIYGLLGPNGAGKTTLIKIIL---GLLKPDSGEIKVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL   94 (173)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEccc-chHhhhccEEEEecCCccccCCcHHHHh
Confidence            35677899999999999999999999999   6544444443221100000 00000000   000 0000000000000


Q ss_pred             HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        90 ~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .               .+..+.|+..+++++..+|++++ +|+|+
T Consensus        95 ~---------------LS~G~~qrv~laral~~~p~ill-lDEPt  123 (173)
T cd03230          95 K---------------LSGGMKQRLALAQALLHDPELLI-LDEPT  123 (173)
T ss_pred             h---------------cCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            0               55678899999999988998777 99998

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.68  E-value=4.1e-08  Score=75.85  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=27.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        18 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (236)
T cd03219          18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISG   48 (236)
T ss_pred             CceEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence            3356788999999999999999999999993

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.68  E-value=2e-08  Score=76.15  Aligned_cols=30  Identities=33%  Similarity=0.391  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G   48 (208)
T cd03268          19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILG   48 (208)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999993

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.68  E-value=2.9e-08  Score=79.61  Aligned_cols=116  Identities=16%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-------------HHHHHc-----CChhhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-------------RAEIKS-----GSENGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-------------~~~~~~-----~~~~~~~~~~~~~~   76 (182)
                      ++.+.++.+++|.||+||||||+++.|+   |....+.|.+.             +.....     ....+....+.+..
T Consensus        22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~---Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~   98 (301)
T TIGR03522        22 SFEAQKGRIVGFLGPNGAGKSTTMKIIT---GYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQF   98 (301)
T ss_pred             EEEEeCCeEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHH
Confidence            5677899999999999999999999999   55444444321             111110     00011112222111


Q ss_pred             ---CCCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 ---GKIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ---~~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                         ....+.+...+.+.+.+..-+-.   ...+..++..++|+..+++++..+|+++| ||+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lli-LDEPt  161 (301)
T TIGR03522        99 IAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLI-LDEPT  161 (301)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence               11122222222233333321111   11133466779999999999988998777 99998

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=4.3e-08  Score=80.01  Aligned_cols=118  Identities=15%  Similarity=0.184  Sum_probs=63.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------------HHHHc--C-Ch--hhHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------------AEIKS--G-SE--NGTMI   70 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------------~~~~~--~-~~--~~~~~   70 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |+...+.|.+..                 .....  + ..  .....
T Consensus        23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv   99 (343)
T PRK11153         23 NVSLHIPAGEIFGVIGASGAGKSTLIRCIN---LLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTV   99 (343)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcH
Confidence            335678899999999999999999999999   544333332211                 00000  0 00  00111


Q ss_pred             HHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           71 QNMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        71 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+...   ...+.....+.+.+.+..-+-...   -...+...++|+..+++++..+|++++ ||+|+
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl-LDEPt  168 (343)
T PRK11153        100 FDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL-CDEAT  168 (343)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            1111100   112222222223333332111111   012344569999999999988998777 99998

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.68  E-value=4.5e-08  Score=77.22  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=27.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   60 (268)
T PRK10419         30 NVSLSLKSGETVALLGRSGCGKSTLARLLVG   60 (268)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456788999999999999999999999993

>PLN02165 adenylate isopentenyltransferase

Probab=98.68  E-value=1.4e-07  Score=76.10  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      ...++.+++|+||+|||||||+..|++.++...++.|.+
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            346677999999999999999999999999888888777

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.68  E-value=2.3e-08  Score=81.51  Aligned_cols=116  Identities=17%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-------------HHHHHc---C--ChhhHHHHHHHH-
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-------------RAEIKS---G--SENGTMIQNMIK-   75 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-------------~~~~~~---~--~~~~~~~~~~~~-   75 (182)
                      ++++.++.+++|+||+||||||+.+.|+   |+...+.|++.             +.....   .  ........+.+. 
T Consensus        61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~---Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~  137 (340)
T PRK13536         61 SFTVASGECFGLLGPNGAGKSTIARMIL---GMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLV  137 (340)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHH---cCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHH
Confidence            5667899999999999999999999999   54433333221             110110   0  000111112111 


Q ss_pred             --cCCCCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 --EGKIVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 --~~~~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                        .....+.....+.+.+.+...+-   ...-+..+...++|+..+++++..+|+++| ||+|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi-LDEPt  200 (340)
T PRK13536        138 FGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI-LDEPT  200 (340)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence              00111222122222233322110   111133566779999999999998998877 99998

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.67  E-value=1.2e-08  Score=88.68  Aligned_cols=116  Identities=21%  Similarity=0.335  Sum_probs=66.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChh----hHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSEN----GTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~----~~~~~~~~~~   76 (182)
                      +++++++..++|+|++|||||||++.|+..+   ..+.|.+              +++......+.    ..++.+-+..
T Consensus       360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~  436 (574)
T PRK11160        360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAW---DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLL  436 (574)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhc
Confidence            4567899999999999999999999999544   2333322              22222211111    1122222222


Q ss_pred             CC-CCCHHHHHHHHHHHH-----HhcCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK-IVPSEVTIKLLQKAM-----EESGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~-~~~~~~~~~~l~~~l-----~~~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +. ..+++.+.+.++..-     .++++ +..+-++   .+..++|+..+++++..+|+++| +|+|+
T Consensus       437 ~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ili-lDE~t  503 (574)
T PRK11160        437 AAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLL-LDEPT  503 (574)
T ss_pred             CCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            21 234455544444321     11111 1222121   34569999999999988998888 99987

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.67  E-value=3.6e-08  Score=75.92  Aligned_cols=31  Identities=35%  Similarity=0.462  Sum_probs=27.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (232)
T cd03218          18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG   48 (232)
T ss_pred             cceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3356778999999999999999999999993

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.67  E-value=4.9e-08  Score=76.89  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=27.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|.|++|||||||++.|+.
T Consensus        29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   59 (265)
T TIGR02769        29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLG   59 (265)
T ss_pred             CceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4466789999999999999999999999993

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.67  E-value=5.6e-09  Score=77.50  Aligned_cols=79  Identities=23%  Similarity=0.241  Sum_probs=56.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   95 (182)
                      +.+.++.+++|.|++|||||||++.|+   |+...+.|.+..+...    .                             
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~----i-----------------------------   63 (177)
T cd03222          20 GVVKEGEVIGIVGPNGTGKTTAVKILA---GQLIPNGDNDEWDGIT----P-----------------------------   63 (177)
T ss_pred             cEECCCCEEEEECCCCChHHHHHHHHH---cCCCCCCcEEEECCEE----E-----------------------------
Confidence            466889999999999999999999999   7655555544321100    0                             


Q ss_pred             cCCCcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           96 SGNDKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        96 ~~~~~~ild--g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                          .++-.  .....++|+..+++++..+|++++ +|+|+.
T Consensus        64 ----~~~~q~~~LSgGq~qrv~laral~~~p~lll-LDEPts  100 (177)
T cd03222          64 ----VYKPQYIDLSGGELQRVAIAAALLRNATFYL-FDEPSA  100 (177)
T ss_pred             ----EEEcccCCCCHHHHHHHHHHHHHhcCCCEEE-EECCcc
Confidence                00000  055678999999999988998777 999983

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.67  E-value=3.6e-07  Score=70.83  Aligned_cols=31  Identities=29%  Similarity=0.477  Sum_probs=27.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   49 (240)
T PRK09493         19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINK   49 (240)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3356778999999999999999999999993

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=1.9e-08  Score=79.82  Aligned_cols=118  Identities=23%  Similarity=0.385  Sum_probs=65.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHc--CCh----hhHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKS--GSE----NGTMIQN   72 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~--~~~----~~~~~~~   72 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |+...+.|++.              +.....  +..    ......+
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e  101 (279)
T PRK13650         25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLID---GLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED  101 (279)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH
Confidence            345677899999999999999999999999   54333333221              111110  000    0111122


Q ss_pred             HHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 MIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+..+   ...+.+...+.+.+.+...+-...   ....++..+.|+..+++++..+|+++| +|+|+
T Consensus       102 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl-LDEPt  168 (279)
T PRK13650        102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII-LDEAT  168 (279)
T ss_pred             HHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence            12111   112222222233333333111111   122345569999999999999998887 99998

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.67  E-value=1.4e-08  Score=75.62  Aligned_cols=104  Identities=11%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC---------hhhHHHHHHHHcCCCCCHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS---------ENGTMIQNMIKEGKIVPSEVT   85 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~   85 (182)
                      ++.+.++.+++|+|++|||||||++.|+   |....+.|.+..+......         ..+...++.. .....+.-.+
T Consensus        20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-~~~~~~~~t~   95 (182)
T cd03215          20 SFEVRAGEIVGIAGLVGNGQTELAEALF---GLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRK-REGLVLDLSV   95 (182)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcc-cCcccCCCcH
Confidence            5667889999999999999999999999   6554555544222111000         0000000000 0000110011


Q ss_pred             HHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        86 ~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+-+..   ..        .++..+.++..+++++..+|++++ +|+|+
T Consensus        96 ~e~l~~---~~--------~LS~G~~qrl~la~al~~~p~lll-lDEP~  132 (182)
T cd03215          96 AENIAL---SS--------LLSGGNQQKVVLARWLARDPRVLI-LDEPT  132 (182)
T ss_pred             HHHHHH---Hh--------hcCHHHHHHHHHHHHHccCCCEEE-ECCCC
Confidence            111110   00        066778999999999988998777 99997

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=5.8e-08  Score=76.88  Aligned_cols=117  Identities=14%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHc--CCh----hhHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKS--GSE----NGTMIQNM   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~--~~~----~~~~~~~~   73 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |+...+.|++..              .....  +..    ....+.+.
T Consensus        24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~  100 (274)
T PRK13647         24 LSLSIPEGSKTALLGPNGAGKSTLLLHLN---GIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD  100 (274)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHH
Confidence            35677899999999999999999999999   443333332211              11110  000    00111111


Q ss_pred             HHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +..+   .........+.+.+.+....-...   ....+...++|+..+++++..+|++++ +|+|+
T Consensus       101 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll-lDEPt  166 (274)
T PRK13647        101 VAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV-LDEPM  166 (274)
T ss_pred             HHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence            1111   012222222223333322111111   123455669999999999999999888 99998

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.67  E-value=3.7e-08  Score=75.82  Aligned_cols=31  Identities=32%  Similarity=0.429  Sum_probs=27.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (230)
T TIGR03410        18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG   48 (230)
T ss_pred             ceeeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3466788999999999999999999999993

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=2.1e-08  Score=77.92  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=27.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (241)
T PRK14250         21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINR   51 (241)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456778999999999999999999999994

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.67  E-value=5.9e-09  Score=80.15  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=27.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +.++++.++.+++|+|++|||||||++.|+.
T Consensus        25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (225)
T PRK10247         25 NISFSLRAGEFKLITGPSGCGKSTLLKIVAS   55 (225)
T ss_pred             ccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3456788999999999999999999999993

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.66  E-value=5.6e-08  Score=74.64  Aligned_cols=114  Identities=17%  Similarity=0.249  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------HH---cCCh-------hhHHHHHHHHcCC--
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------IK---SGSE-------NGTMIQNMIKEGK--   78 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------~~---~~~~-------~~~~~~~~~~~~~--   78 (182)
                      .+.++.+++|+|++|||||||++.|+   |....+.|++..+.      ..   ...+       ......+.+..+.  
T Consensus         2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~   78 (223)
T TIGR03771         2 SADKGELLGLLGPNGAGKTTLLRAIL---GLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG   78 (223)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence            45688999999999999999999999   54333333221111      00   0000       0111222221110  


Q ss_pred             ---C--CCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 ---I--VPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 ---~--~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                         .  .+.....+.+.+.+..-.-...   .+..++..++|+..+.+++..+|+++| +|+|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lli-lDEP~  141 (223)
T TIGR03771        79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLL-LDEPF  141 (223)
T ss_pred             ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence               0  0111111222333322111111   123455669999999999999998887 99998

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.66  E-value=7.6e-09  Score=91.88  Aligned_cols=121  Identities=20%  Similarity=0.247  Sum_probs=69.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecH---HHH----HHHHHHcCCh----hhHHHHHHHHcC-
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSA---GDL----LRAEIKSGSE----NGTMIQNMIKEG-   77 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~---~di----~~~~~~~~~~----~~~~~~~~~~~~-   77 (182)
                      -+++++++..++|+|++||||||+++.|...+.    -..++.   .++    +++......+    ...++++-+.-+ 
T Consensus       500 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~  579 (711)
T TIGR00958       500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL  579 (711)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC
Confidence            356678999999999999999999999995552    112221   111    1122221111    122233323323 


Q ss_pred             CCCCHHHHHHHHHHH-----HHh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           78 KIVPSEVTIKLLQKA-----MEE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        78 ~~~~~~~~~~~l~~~-----l~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      ...+++.+.+.++..     +.+ +. .+..+-++   ....++|+..+++++-.+|+++| ||+|+.
T Consensus       580 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILI-LDEpTS  646 (711)
T TIGR00958       580 TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI-LDEATS  646 (711)
T ss_pred             CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EEcccc
Confidence            234455555554432     221 11 12222221   34569999999999988998888 999883

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.66  E-value=1.6e-08  Score=79.40  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=61.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH------HH---HHc--CC-h--hhHHHHHHHHcCCC
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR------AE---IKS--GS-E--NGTMIQNMIKEGKI   79 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~------~~---~~~--~~-~--~~~~~~~~~~~~~~   79 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |+...+.|.+..      ..   ...  +. .  ......+.+.....
T Consensus        31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~---Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  107 (257)
T PRK11247         31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLA---GLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLK  107 (257)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhccc
Confidence            35667899999999999999999999999   543333333211      00   000  00 0  00111221111110


Q ss_pred             CCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           80 VPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        80 ~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       . . ..+.+.+.+..-+-...   -...++..++|+..+.+++..+|+++| +|+|+
T Consensus       108 -~-~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll-LDEPt  161 (257)
T PRK11247        108 -G-Q-WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL-LDEPL  161 (257)
T ss_pred             -c-h-HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence             0 0 01112222222111111   122345669999999999988998887 99998

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.66  E-value=1.1e-08  Score=76.85  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHH----HcCChhhHHHHHHHHcCCCCCHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVTIK   87 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (182)
                      -++++.++.+++|+|++|||||||++.|+   |..  ..+.|++..+..    ......+...++    ...++.-.+.+
T Consensus        26 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~----~~~~~~~tv~~   98 (192)
T cd03232          26 ISGYVKPGTLTALMGESGAGKTTLLDVLA---GRKTAGVITGEILINGRPLDKNFQRSTGYVEQQ----DVHSPNLTVRE   98 (192)
T ss_pred             cEEEEeCCcEEEEECCCCCCHHHHHHHHh---CCCcCCCcceEEEECCEehHHHhhhceEEeccc----CccccCCcHHH
Confidence            35677899999999999999999999999   432  123332211100    000000000000    11111111111


Q ss_pred             HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        88 ~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.....        ++.++..+.|+..+++++..+|++++ +|+|+
T Consensus        99 ~l~~~~~--------~~~LSgGe~qrv~la~al~~~p~vll-lDEP~  136 (192)
T cd03232          99 ALRFSAL--------LRGLSVEQRKRLTIGVELAAKPSILF-LDEPT  136 (192)
T ss_pred             HHHHHHH--------HhcCCHHHhHHHHHHHHHhcCCcEEE-EeCCC
Confidence            1111100        11566779999999999988998777 99997

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.66  E-value=2.2e-07  Score=71.88  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=27.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (241)
T cd03256          20 VSLSINPGEFVALIGPSGAGKSTLLRCLNG   49 (241)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356788999999999999999999999993

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.66  E-value=3.1e-08  Score=85.85  Aligned_cols=119  Identities=19%  Similarity=0.256  Sum_probs=69.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecH---HHH----HHHHHHcCCh----hhHHHHHHHHcCC-
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSA---GDL----LRAEIKSGSE----NGTMIQNMIKEGK-   78 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~---~di----~~~~~~~~~~----~~~~~~~~~~~~~-   78 (182)
                      ++.++++..++|+|++|||||||++.|+..+.    -..++.   .++    +++....-++    ...++.+-+..+. 
T Consensus       352 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~  431 (571)
T TIGR02203       352 SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT  431 (571)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC
Confidence            45678999999999999999999999995542    112221   111    1122221111    1222223233232 


Q ss_pred             -CCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 -IVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 -~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       ..+++.+.+.++..     +.+ +++ +..+-++   .+..++|+..+++++..+|++++ ||+|+
T Consensus       432 ~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ill-LDEpt  497 (571)
T TIGR02203       432 EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI-LDEAT  497 (571)
T ss_pred             CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EeCcc
Confidence             35566666655542     222 122 2222222   45569999999999988898887 99998

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.66  E-value=7.1e-08  Score=74.07  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=25.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...++..|+|.|++|||||||++.++..+
T Consensus        53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~   81 (257)
T COG1119          53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEH   81 (257)
T ss_pred             eecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence            46788899999999999999999998544

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=3.8e-08  Score=77.12  Aligned_cols=118  Identities=18%  Similarity=0.248  Sum_probs=63.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------HH--cCC-h--hhHHHHHHHHcC-
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------IK--SGS-E--NGTMIQNMIKEG-   77 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~~--~~~-~--~~~~~~~~~~~~-   77 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |....+.|.+..+.         ..  .+. .  ......+.+... 
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~   95 (255)
T PRK11248         19 DINLTLESGELLVVLGPSGCGKTTLLNLIA---GFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGL   95 (255)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHH
Confidence            345678899999999999999999999999   54433333332110         00  000 0  001111111100 


Q ss_pred             --CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           78 --KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        78 --~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                        .........+.+.+.+..-+-...   -...++..++|+..+++++..+|+++| +|+|+
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll-LDEPt  156 (255)
T PRK11248         96 QLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL-LDEPF  156 (255)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence              011222112222333322111111   122345669999999999988998777 99998

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.65  E-value=1.9e-08  Score=79.76  Aligned_cols=121  Identities=15%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHH-------HHHHHcCChh----hHHHHHHHHcCC
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL-------RAEIKSGSEN----GTMIQNMIKEGK   78 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~-------~~~~~~~~~~----~~~~~~~~~~~~   78 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..+.   -..++..++.       +..+..-.+.    ...+.+.+....
T Consensus        22 ~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~  101 (275)
T cd03289          22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG  101 (275)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhcc
Confidence            3456789999999999999999999999995542   1122211111       1111110110    112222221111


Q ss_pred             CCCHHHHHHHHHHHH-----Hh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 IVPSEVTIKLLQKAM-----EE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 ~~~~~~~~~~l~~~l-----~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...++.+.+.+....     .. ... ...+-+   .++..+.|+..+++++..+|++++ +|+|+
T Consensus       102 ~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill-lDEpt  166 (275)
T cd03289         102 KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL-LDEPS  166 (275)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EECcc
Confidence            233444444433221     11 111 111111   145569999999999988998887 99997

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.65  E-value=8.3e-09  Score=78.95  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=27.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        22 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (221)
T cd03244          22 NISFSIKPGEKVGIVGRTGSGKSSLLLALFRL   53 (221)
T ss_pred             ceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            34567889999999999999999999999943

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.65  E-value=9.8e-09  Score=88.22  Aligned_cols=116  Identities=18%  Similarity=0.249  Sum_probs=67.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++..++|+|++|||||||++.|+..+   .++.|++              +++......+    ...++.+-+.-
T Consensus       342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~  418 (529)
T TIGR02857       342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRL  418 (529)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhc
Confidence            5567899999999999999999999999444   3333322              1111111111    11222222222


Q ss_pred             C-CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G-KIVPSEVTIKLLQKA-----MEE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~-~~~~~~~~~~~l~~~-----l~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      + ...+++.+.+.++..     +.+ +++ +..+-+   .....++|+..+++++..+|+++| +|+|+
T Consensus       419 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ili-lDE~t  486 (529)
T TIGR02857       419 ARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLL-LDEPT  486 (529)
T ss_pred             cCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEE-EeCcc
Confidence            2 223445444444432     111 111 222112   145569999999999988998888 99987

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.65  E-value=4.1e-08  Score=75.75  Aligned_cols=116  Identities=15%  Similarity=0.182  Sum_probs=63.1

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH---------H--cCC---hhhHHHHHHHHc---C
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI---------K--SGS---ENGTMIQNMIKE---G   77 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~---------~--~~~---~~~~~~~~~~~~---~   77 (182)
                      ++++.++.+++|+|++|||||||++.|+   |....+.|.+..+..         .  .+.   .......+.+..   .
T Consensus         5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~   81 (230)
T TIGR01184         5 NLTIQQGEFISLIGHSGCGKSTLLNLIS---GLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR   81 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence            5567889999999999999999999999   544333333321100         0  000   000111111110   0


Q ss_pred             --CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           78 --KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        78 --~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                        .........+.+.+.+..-+-...   ....++..++|+..+.+++..+|+++| +|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt  142 (230)
T TIGR01184        82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLL-LDEPF  142 (230)
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EcCCC
Confidence              012222222222333322111111   122355669999999999988998777 99998

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=8.6e-08  Score=73.99  Aligned_cols=30  Identities=20%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   57 (233)
T PRK11629         28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGG   57 (233)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            356788999999999999999999999993

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.65  E-value=8.1e-08  Score=73.83  Aligned_cols=30  Identities=30%  Similarity=0.458  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   58 (228)
T PRK10584         29 VELVVKRGETIALIGESGSGKSTLLAILAG   58 (228)
T ss_pred             cEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            356778999999999999999999999994

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=1.8e-07  Score=75.89  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=28.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +-++++.++.+++|.|++|||||||++.|+..+
T Consensus        25 ~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll   57 (326)
T PRK11022         25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI   57 (326)
T ss_pred             eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            346778999999999999999999999999544

>PRK10908 cell division protein FtsE; Provisional

Probab=98.65  E-value=1.6e-07  Score=71.90  Aligned_cols=30  Identities=27%  Similarity=0.404  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (222)
T PRK10908         21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICG   50 (222)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999993

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=2.1e-07  Score=72.22  Aligned_cols=30  Identities=20%  Similarity=0.303  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (242)
T PRK11124         21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNL   50 (242)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999993

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.65  E-value=2.8e-08  Score=78.28  Aligned_cols=118  Identities=18%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH------HcCChhhHHHHHHHHc---CCCCCHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI------KSGSENGTMIQNMIKE---GKIVPSE   83 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~   83 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |....+.|.+.....      ...........+.+..   ......+
T Consensus        42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~  118 (264)
T PRK13546         42 DISLKAYEGDVIGLVGINGSGKSTLSNIIG---GSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRK  118 (264)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHH
Confidence            345678899999999999999999999999   554444443321110      0000000111111110   0112222


Q ss_pred             HHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           84 VTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        84 ~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...+.+...+........   -+..++..+.++..+++++..+|+++| +|+|+
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLl-LDEPt  171 (264)
T PRK13546        119 EIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV-IDEAL  171 (264)
T ss_pred             HHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEE-EeCcc
Confidence            222222333322111111   122355668899999999988898777 99998

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.65  E-value=1.5e-07  Score=71.92  Aligned_cols=32  Identities=25%  Similarity=0.380  Sum_probs=27.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            33567889999999999999999999999943

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=4e-08  Score=72.62  Aligned_cols=116  Identities=13%  Similarity=0.097  Sum_probs=67.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhh------------------HHHHH--
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG------------------TMIQN--   72 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~------------------~~~~~--   72 (182)
                      +-++.+..+..+.|+||+|||||||.+.|+   |+...+.|++.++.........                  .+..+  
T Consensus        20 ~L~f~l~~Ge~~~i~G~NG~GKTtLLRila---GLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL   96 (209)
T COG4133          20 DLSFTLNAGEALQITGPNGAGKTTLLRILA---GLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENL   96 (209)
T ss_pred             ceeEEEcCCCEEEEECCCCCcHHHHHHHHH---cccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHH
Confidence            345667889999999999999999999999   7777777766544222111111                  00000  


Q ss_pred             --HHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           73 --MIKEGKIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        73 --~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                        +...+...+.+.+.+++......    ++ .|    .....++.+..+++...-...+.| ||+|+..+
T Consensus        97 ~F~~~~~~~~~~~~i~~Al~~vgL~----g~-~dlp~~~LSAGQqRRvAlArL~ls~~pLWi-LDEP~taL  161 (209)
T COG4133          97 HFWQRFHGSGNAATIWEALAQVGLA----GL-EDLPVGQLSAGQQRRVALARLWLSPAPLWI-LDEPFTAL  161 (209)
T ss_pred             HHHHHHhCCCchhhHHHHHHHcCcc----cc-cccchhhcchhHHHHHHHHHHHcCCCCcee-ecCccccc
Confidence              01101112333344444433222    11 22    124457888888888765566777 99998443

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=1.4e-07  Score=75.79  Aligned_cols=30  Identities=23%  Similarity=0.461  Sum_probs=27.2

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      +-++.+.++.+++|+|++|||||||++.|+
T Consensus        25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~   54 (305)
T PRK13651         25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLN   54 (305)
T ss_pred             eeEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence            346677899999999999999999999999

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.64  E-value=3.1e-07  Score=71.01  Aligned_cols=93  Identities=26%  Similarity=0.408  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---CC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES---GN   98 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~   98 (182)
                      .+|+|+|.+|||||+-++.| +.+|+.++|.                           +|.+++.+++.-.....   ..
T Consensus         2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k   53 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK   53 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence            47999999999999988866 8899888775                           77777777766443221   12


Q ss_pred             CcEEEeC----CCCCHH-HHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176           99 DKFLIDG----FPRNEE-NRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        99 ~~~ildg----~~~~~~-q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      -.+++|-    ++.... ....+.......++ ++||+|+.++|.+|+..
T Consensus        54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~-iLFLeA~~~~Lv~RY~e  102 (286)
T COG1660          54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPR-VLFLEADDETLVRRYSE  102 (286)
T ss_pred             EEEEEecccchhHHHHHHHHHHHHhcCCCCce-EEEEECchhHHHHHHhh
Confidence            3444553    222222 22223222112354 66799999999999996

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=7.7e-08  Score=79.94  Aligned_cols=117  Identities=18%  Similarity=0.265  Sum_probs=63.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------H----HHHc--CC---hhhHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------A----EIKS--GS---ENGTMI   70 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~----~~~~--~~---~~~~~~   70 (182)
                      -++++.++.+++|+|++|||||||++.|+   |+...+.|.+..              .    .+..  +.   ......
T Consensus        47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~---Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv  123 (400)
T PRK10070         47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLN---RLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTV  123 (400)
T ss_pred             EEEEEcCCCEEEEECCCCchHHHHHHHHH---cCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCH
Confidence            35678899999999999999999999999   443333332211              0    0000  00   001111


Q ss_pred             HHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           71 QNMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        71 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+...   ...+.+...+.+.+.+..-+-..+   ....+...++|+..+++++..+|++++ +|+|+
T Consensus       124 ~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLL-LDEPt  192 (400)
T PRK10070        124 LDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILL-MDEAF  192 (400)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence            1111110   011222222223333333211111   122344569999999999999998877 99998

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1.9e-06  Score=66.52  Aligned_cols=123  Identities=17%  Similarity=0.285  Sum_probs=74.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC------ChhhHHHHHHHHcCCC-CCH--------
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG------SENGTMIQNMIKEGKI-VPS--------   82 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~------~~~~~~~~~~~~~~~~-~~~--------   82 (182)
                      ++.|.+|+|=|+||+||||+|..||.++|+..+-..|.+++.+..-      +...++..+++..-.. .++        
T Consensus        86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~  165 (299)
T COG2074          86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFE  165 (299)
T ss_pred             cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHH
Confidence            5678899999999999999999999999999988888888887732      2233333333222111 111        


Q ss_pred             ---HHHHHHHHHHHHh--cCCCcEEEeCC---CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           83 ---EVTIKLLQKAMEE--SGNDKFLIDGF---PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        83 ---~~~~~~l~~~l~~--~~~~~~ildg~---~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                         +.+..-+...+.+  ..+..+|++|.   |...+.- .    ++.+....+..-.+++....|+.+|.
T Consensus       166 dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~-~----~~~n~~~~~l~i~dee~Hr~RF~~R~  231 (299)
T COG2074         166 DQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE-A----LGNNVFMFMLYIADEELHRERFYDRI  231 (299)
T ss_pred             HHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh-h----hccceEEEEEEeCCHHHHHHHHHHHH
Confidence               1122222222222  34667889983   4332221 1    11223334435678888999999985

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=2.9e-07  Score=73.29  Aligned_cols=118  Identities=15%  Similarity=0.200  Sum_probs=66.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH------------------HHHHHHcCCh------hhH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL------------------LRAEIKSGSE------NGT   68 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di------------------~~~~~~~~~~------~~~   68 (182)
                      +-++++.++.+++|.|++|||||||++.|+   |....+.|++                  ++.....-.+      ...
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~  101 (286)
T PRK13646         25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNIN---ALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED  101 (286)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchh
Confidence            346678899999999999999999999999   4433333322                  1111111000      011


Q ss_pred             HHHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE----EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           69 MIQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKF----LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        69 ~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~----ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+.+..+   ...+.+...+.+.+.+...+....    -...+...+.|+..+++++..+|+++| +|+|+
T Consensus       102 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~ill-lDEPt  173 (286)
T PRK13646        102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIV-LDEPT  173 (286)
T ss_pred             hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence            222222111   112332333333444433221111    123345569999999999988998877 99998

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.64  E-value=6.3e-08  Score=82.23  Aligned_cols=121  Identities=16%  Similarity=0.253  Sum_probs=78.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc-EecHHHHHHHHH--------------H---------------c
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT-HLSAGDLLRAEI--------------K---------------S   62 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~-~~~~~di~~~~~--------------~---------------~   62 (182)
                      +-+++..++.+++|.|-+||||||++..|..-+... .+..|.++.+..              +               +
T Consensus        27 ~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP  106 (539)
T COG1123          27 DVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNP  106 (539)
T ss_pred             cceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCc
Confidence            446778999999999999999999999998554433 222333311111              0               1


Q ss_pred             CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           63 GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      ....+.++.+.+..+.....+...+...+++...+  ..... +.||    ..+.|+..++.++..+|+++| +|+|+.
T Consensus       107 ~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-~~yPheLSGG~rQRv~iAmALa~~P~LLI-aDEPTT  183 (539)
T COG1123         107 VMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-DRYPHQLSGGMRQRVMIAMALALKPKLLI-ADEPTT  183 (539)
T ss_pred             hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-ccCCcccCchHHHHHHHHHHHhCCCCEEE-ECCCcc
Confidence            12356666666555554445555555555555422  11111 4454    459999999999999999888 999983

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=7.7e-08  Score=76.36  Aligned_cols=118  Identities=22%  Similarity=0.364  Sum_probs=64.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHc--CCh----hhHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKS--GSE----NGTMIQN   72 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~--~~~----~~~~~~~   72 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |....+.|++..              .....  +..    ....+.+
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~---G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e  101 (279)
T PRK13635         25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLN---GLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD  101 (279)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHH
Confidence            345677899999999999999999999999   443333332211              11110  000    0111111


Q ss_pred             HHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 MIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+..+   ...+.+...+.+.+.+...+-...   ....+...+.++..+++++..+|+++| +|+|+
T Consensus       102 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-LDEPt  168 (279)
T PRK13635        102 DVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII-LDEAT  168 (279)
T ss_pred             HHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            11111   112222222223333332111111   123455669999999999999998877 99998

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.64  E-value=1.2e-07  Score=73.49  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=27.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   50 (243)
T TIGR02315        20 NINLNINPGEFVAIIGPSGAGKSTLLRCINR   50 (243)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3466788999999999999999999999994

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.64  E-value=3.2e-08  Score=80.38  Aligned_cols=32  Identities=16%  Similarity=0.331  Sum_probs=28.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++++.++.+++|+|++|||||||++.|+..+
T Consensus        35 vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~   66 (330)
T PRK09473         35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLL   66 (330)
T ss_pred             eEEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            35678899999999999999999999999443

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.63  E-value=1.2e-07  Score=81.38  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=28.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDL   55 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-~~~~~~~di   55 (182)
                      ..+.+|+|.|++||||||+++.|+..++ ...+..|+.
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            3457999999999999999999998774 234555554

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.63  E-value=3e-08  Score=76.99  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (242)
T cd03295          20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINR   49 (242)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            356788999999999999999999999994

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.63  E-value=7.2e-08  Score=78.98  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=30.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~   53 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |+...+.|
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~ia---Gl~~p~~G   53 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAIS---GLTRPQKG   53 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCce
Confidence            446677899999999999999999999999   55444443

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.63  E-value=1e-07  Score=73.86  Aligned_cols=118  Identities=22%  Similarity=0.276  Sum_probs=63.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH---------------HHHHHcCCh-----hhHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL---------------RAEIKSGSE-----NGTMIQN   72 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~---------------~~~~~~~~~-----~~~~~~~   72 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |....+.|.+.               +.......+     ......+
T Consensus        21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   97 (241)
T PRK10895         21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVV---GIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYD   97 (241)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHH
Confidence            345677899999999999999999999999   54333333221               110110000     0111111


Q ss_pred             HHHcC----CCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 MIKEG----KIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ~~~~~----~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+...    .....+.....+.+.+..-+-.   ..-...++..+.|+..+++++..+|++++ +|+|+
T Consensus        98 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-lDEPt  165 (241)
T PRK10895         98 NLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL-LDEPF  165 (241)
T ss_pred             HHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            11110    0111111112222222221100   11123456679999999999988998777 99998

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.63  E-value=8.9e-08  Score=75.58  Aligned_cols=30  Identities=27%  Similarity=0.434  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~G   72 (269)
T cd03294          43 VSLDVREGEIFVIMGLSGSGKSTLLRCINR   72 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            356678999999999999999999999993

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.63  E-value=2.7e-07  Score=70.74  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=28.0

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++++.++.+++|+|++|||||||++.|+..
T Consensus        26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   57 (224)
T TIGR02324        26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYAN   57 (224)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567789999999999999999999999943

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.63  E-value=1.4e-07  Score=71.59  Aligned_cols=31  Identities=26%  Similarity=0.276  Sum_probs=27.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +.++++.++.+++|+|++|||||||++.|+.
T Consensus        20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (207)
T PRK13539         20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAG   50 (207)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456788999999999999999999999994

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.62  E-value=5.7e-08  Score=88.63  Aligned_cols=120  Identities=23%  Similarity=0.341  Sum_probs=76.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHH-------HHHHHHcCCh----hhHHHHHHHHcC-C
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDL-------LRAEIKSGSE----NGTMIQNMIKEG-K   78 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di-------~~~~~~~~~~----~~~~~~~~~~~~-~   78 (182)
                      .++...+..++|+||+||||||+...|.+-|    |...+|..|+       +|..+....+    ...++.+-+.-| .
T Consensus      1010 ~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~ 1089 (1228)
T KOG0055|consen 1010 SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE 1089 (1228)
T ss_pred             cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC
Confidence            4467899999999999999999999887666    4556665554       3444432222    234444444445 3


Q ss_pred             CCCHHHHHHHHHHHHHh-------cCCCcEEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           79 IVPSEVTIKLLQKAMEE-------SGNDKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        79 ~~~~~~~~~~l~~~l~~-------~~~~~~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      ..+.+.+.++++..-..       .+.+..+-| |  ....++||.+++|++-.+|.+++ ||+-+.
T Consensus      1090 ~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILL-LDEATS 1155 (1228)
T KOG0055|consen 1090 EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILL-LDEATS 1155 (1228)
T ss_pred             CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeee-eeccch
Confidence            35667776666543221       112222222 1  34569999999999988998777 998763

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.62  E-value=4.3e-08  Score=77.28  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=28.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl   62 (267)
T PRK15112         31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34667889999999999999999999999943

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.62  E-value=3.5e-08  Score=72.22  Aligned_cols=93  Identities=15%  Similarity=0.244  Sum_probs=61.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (182)
                      +-++.+.++.+++|.|++|||||||++.|+   |....+.|.+..+....               ...+..       +.
T Consensus        18 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~v~~~g~~~---------------~~~~~~-------~~   72 (163)
T cd03216          18 GVSLSVRRGEVHALLGENGAGKSTLMKILS---GLYKPDSGEILVDGKEV---------------SFASPR-------DA   72 (163)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEC---------------CcCCHH-------HH
Confidence            335678899999999999999999999999   76555554442211000               000000       01


Q ss_pred             HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+  ..++ +..+...+.|+..+++++..+|++++ +|+|+
T Consensus        73 ~~~--~i~~-~~qLS~G~~qrl~laral~~~p~ill-lDEP~  110 (163)
T cd03216          73 RRA--GIAM-VYQLSVGERQMVEIARALARNARLLI-LDEPT  110 (163)
T ss_pred             Hhc--CeEE-EEecCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence            111  1223 33377789999999999988998777 99998

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=9.5e-08  Score=75.50  Aligned_cols=117  Identities=23%  Similarity=0.413  Sum_probs=63.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHc--CCh----hhHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKS--GSE----NGTMIQNM   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~--~~~----~~~~~~~~   73 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |+...+.|++.              +.....  +..    ......+.
T Consensus        28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en  104 (271)
T PRK13632         28 VSFEINEGEYVAILGHNGSGKSTISKILT---GLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDD  104 (271)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHH
Confidence            35677899999999999999999999999   44333333221              111110  000    01111121


Q ss_pred             HHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +...   .....+.....+.+.+..-+-...   ....++..+.|+..+.+++..+|++++ +|+|+
T Consensus       105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-LDEP~  170 (271)
T PRK13632        105 IAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII-FDEST  170 (271)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            1111   112222222223333332111111   122355569999999999988998877 99998

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.62  E-value=4e-08  Score=75.35  Aligned_cols=127  Identities=20%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------cCCh-hhHHHHHHHHcCC--CCCH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-------SGSE-NGTMIQNMIKEGK--IVPS   82 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-------~~~~-~~~~~~~~~~~~~--~~~~   82 (182)
                      +-+++..++..++|.|.+|||||||++.|+   |...++.|.+..+..-       .+.+ .-.-.++....+.  -...
T Consensus        45 disf~i~~Ge~vGiiG~NGaGKSTLlklia---Gi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~  121 (249)
T COG1134          45 DISFEIYKGERVGIIGHNGAGKSTLLKLIA---GIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTR  121 (249)
T ss_pred             CceEEEeCCCEEEEECCCCCcHHHHHHHHh---CccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccH
Confidence            346678899999999999999999999999   7666666654221111       1100 0011111111111  0112


Q ss_pred             HHHHHHHHHHH----HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH--------HHHHHHHHhh
Q 030176           83 EVTIKLLQKAM----EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE--------EEMERRILNR  144 (182)
Q Consensus        83 ~~~~~~l~~~l----~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~--------~~l~~R~~~R  144 (182)
                      +.+.+...+..    ..+--+.- +..|...+.-+..|.-+...+||++| +|+-.        +.+.+|+.++
T Consensus       122 ~ei~~~~~eIieFaELG~fi~~P-vktYSSGM~aRLaFsia~~~~pdILl-lDEvlavGD~~F~~K~~~rl~e~  193 (249)
T COG1134         122 KEIDEKVDEIIEFAELGDFIDQP-VKTYSSGMYARLAFSVATHVEPDILL-LDEVLAVGDAAFQEKCLERLNEL  193 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCc-hhhccHHHHHHHHHhhhhhcCCCEEE-EehhhhcCCHHHHHHHHHHHHHH
Confidence            22222221111    11000011 33567778889999888889999988 88754        5566666655

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.62  E-value=8e-08  Score=73.90  Aligned_cols=116  Identities=22%  Similarity=0.277  Sum_probs=68.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH----------HHHHcCC---------hhhHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR----------AEIKSGS---------ENGTMIQNMI   74 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~----------~~~~~~~---------~~~~~~~~~~   74 (182)
                      -++..+++.+.++.|++|+||||..+.+.   |+...+.|.+-+          +.++..+         ..-.++. ++
T Consensus        21 isf~v~~G~i~GllG~NGAGKTTtfRmIL---glle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~-yl   96 (300)
T COG4152          21 ISFEVPPGEIFGLLGPNGAGKTTTFRMIL---GLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLK-YL   96 (300)
T ss_pred             eeeeecCCeEEEeecCCCCCccchHHHHh---ccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHH-HH
Confidence            35667899999999999999999999998   655554444322          1111110         0011111 12


Q ss_pred             HcCCCCCHHHHHHHHHHHHHh---cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~l~~---~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..-.-.+.+.+...+...+.+   .....--++......+|-..+...+..+|+++| ||+|+
T Consensus        97 a~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlI-LDEPF  158 (300)
T COG4152          97 AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLI-LDEPF  158 (300)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEE-ecCCc
Confidence            222334444444444444443   111222244555667777788888888999988 99997

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.62  E-value=1.6e-08  Score=76.07  Aligned_cols=106  Identities=18%  Similarity=0.245  Sum_probs=61.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHHHc-----CChhhHHHHHHHHcCCCCCHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKS-----GSENGTMIQNMIKEGKIVPSEVT   85 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   85 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |..  ..+.|.+..+....     ....+...++    ...++...+
T Consensus        27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~---Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~----~~~~~~~t~   99 (194)
T cd03213          27 NVSGKAKPGELTAIMGPSGAGKSTLLNALA---GRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQD----DILHPTLTV   99 (194)
T ss_pred             cceEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCCceEEEECCEeCchHhhhheEEEccCc----ccCCCCCcH
Confidence            345677899999999999999999999999   554  44444432211100     0001111100    111111111


Q ss_pred             HHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        86 ~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+.... .       +..+...+.++..+++++..+|++++ +|+|+
T Consensus       100 ~~~i~~~~-~-------~~~LS~G~~qrv~laral~~~p~ill-lDEP~  139 (194)
T cd03213         100 RETLMFAA-K-------LRGLSGGERKRVSIALELVSNPSLLF-LDEPT  139 (194)
T ss_pred             HHHHHHHH-H-------hccCCHHHHHHHHHHHHHHcCCCEEE-EeCCC
Confidence            11111100 0       11556678999999999988998777 99998

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.62  E-value=1.8e-08  Score=75.18  Aligned_cols=121  Identities=16%  Similarity=0.281  Sum_probs=70.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHH--------H------HHHHHHcCChhhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGD--------L------LRAEIKSGSENGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~d--------i------~~~~~~~~~~~~~~~~~~~   74 (182)
                      +.+.+++++.+-.|.||+|+|||||...+++-++    -..++.-+        +      ++..+..  ..-...++..
T Consensus        19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i--~~rlTV~dLv   96 (252)
T COG4604          19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHI--NSRLTVRDLV   96 (252)
T ss_pred             cceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchh--hheeEHHHHh
Confidence            3456789999999999999999999988876553    22222211        1      1111110  1112223333


Q ss_pred             HcC-------CCCC-H-HHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           75 KEG-------KIVP-S-EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        75 ~~~-------~~~~-~-~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                      ..|       +... + ..+-+.+..+-.. +-..-.+|.....+.|+..++..+.++-|+++ ||+|...|
T Consensus        97 ~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl-LDEPLNNL  166 (252)
T COG4604          97 GFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL-LDEPLNNL  166 (252)
T ss_pred             hcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcEEE-ecCccccc
Confidence            333       2222 1 2233333332222 22222477788889999999888888888877 99998443

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.62  E-value=4e-08  Score=74.50  Aligned_cols=110  Identities=13%  Similarity=0.163  Sum_probs=61.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHc--CC-h-hhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKS--GS-E-NGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~--~~-~-~~~~~~~~~   74 (182)
                      +-++.+.++.+++|.|++|||||||++.|+   |+...+.|.+.              +.....  +. . ......+.+
T Consensus        26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l  102 (207)
T cd03369          26 NVSFKVKAGEKIGIVGRTGAGKSTLILALF---RFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL  102 (207)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHh---cccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHh
Confidence            345677899999999999999999999999   43322222221              111110  00 0 001121211


Q ss_pred             HcCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ........+.+.+.+.    - .  . -...++..+.|+..+++++..+|+++| +|+|+
T Consensus       103 ~~~~~~~~~~~~~~l~----~-~--~-~~~~LS~G~~qrv~laral~~~p~lll-lDEP~  153 (207)
T cd03369         103 DPFDEYSDEEIYGALR----V-S--E-GGLNLSQGQRQLLCLARALLKRPRVLV-LDEAT  153 (207)
T ss_pred             cccCCCCHHHHHHHhh----c-c--C-CCCcCCHHHHHHHHHHHHHhhCCCEEE-EeCCc
Confidence            1111122222222221    0 0  0 123455668999999999988998888 99997

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.62  E-value=5.4e-08  Score=84.71  Aligned_cols=116  Identities=21%  Similarity=0.292  Sum_probs=67.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      ++.+.++..++|+|++|||||||++.|+..+   ..+.|++              +++.....++    ...++.+-+.-
T Consensus       355 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~  431 (588)
T PRK13657        355 SFEAKPGQTVAIVGPTGAGKSTLINLLQRVF---DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV  431 (588)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhc
Confidence            4567889999999999999999999999544   2333222              1222221111    12222222222


Q ss_pred             C-CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G-KIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~-~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      + ....++.+...++..     +.+ +.+ +..+-++   +...+.|+..+++++..+|+++| ||+|+
T Consensus       432 ~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili-LDEpt  499 (588)
T PRK13657        432 GRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI-LDEAT  499 (588)
T ss_pred             CCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            2 234455554444332     222 122 2222221   45569999999999988998888 99987

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.62  E-value=6.2e-08  Score=83.70  Aligned_cols=115  Identities=21%  Similarity=0.340  Sum_probs=63.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChhhHHHHHHHHc-CCC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSENGTMIQNMIKE-GKI   79 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~~~~~~~~~~~-~~~   79 (182)
                      +++++++..++|+|++|||||||++.|+   |+...+.|.+              +++......+....+...+.. +..
T Consensus       343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~  419 (547)
T PRK10522        343 NLTIKRGELLFLIGGNGSGKSTLAMLLT---GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKP  419 (547)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCc
Confidence            5567899999999999999999999999   4433333322              111111111111222222211 112


Q ss_pred             CCHHHHHHHHHHHHHhcC---CCcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           80 VPSEVTIKLLQKAMEESG---NDKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        80 ~~~~~~~~~l~~~l~~~~---~~~~ild--g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..++.+.+.++..-....   ..+. ++  ..+..++|+..+++++..+|+++| +|+|+
T Consensus       420 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~G~~LSgGq~qRl~lARal~~~~~ili-lDE~t  477 (547)
T PRK10522        420 ANPALVEKWLERLKMAHKLELEDGR-ISNLKLSKGQKKRLALLLALAEERDILL-LDEWA  477 (547)
T ss_pred             hHHHHHHHHHHHcCCchhhhccccC-CCCCCCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence            223333333332211100   0000 11  245569999999999988999888 99987

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=3.1e-07  Score=73.20  Aligned_cols=118  Identities=21%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH----------------HHHHH--cCC---h-hhHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL----------------RAEIK--SGS---E-NGTMI   70 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~----------------~~~~~--~~~---~-~~~~~   70 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |+...+.|++.                +....  .+.   . .....
T Consensus        25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv  101 (287)
T PRK13637         25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLN---GLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI  101 (287)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccH
Confidence            335678899999999999999999999999   54433333221                11111  000   0 01112


Q ss_pred             HHHHHcC---CCCCHHHHHHHHHHHHHhcCCC-cEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           71 QNMIKEG---KIVPSEVTIKLLQKAMEESGND-KFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        71 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~-~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+..+   ...+.+...+.+.+.+...... .-..+    .++..++|+..+++++..+|+++| +|+|+
T Consensus       102 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~lll-lDEPt  172 (287)
T PRK13637        102 EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILI-LDEPT  172 (287)
T ss_pred             HHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence            2211111   1123332333334444332211 01123    345569999999999998998877 99998

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.61  E-value=6.2e-09  Score=78.79  Aligned_cols=112  Identities=22%  Similarity=0.267  Sum_probs=62.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE---ecHHHHHHHHHHc-------CChhhHHHHHHHHcCCCCCH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH---LSAGDLLRAEIKS-------GSENGTMIQNMIKEGKIVPS   82 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~---~~~~di~~~~~~~-------~~~~~~~~~~~~~~~~~~~~   82 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |...   .+.|++..+....       ....+...++    ...++.
T Consensus        25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~----~~~~~~   97 (202)
T cd03233          25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALA---NRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEE----DVHFPT   97 (202)
T ss_pred             eEEEEECCCcEEEEECCCCCCHHHHHHHhc---ccCCCCCCcceEEEECCEECccchhhhcceEEEEecc----cccCCC
Confidence            335677899999999999999999999999   5433   3444432211100       0000000000    111111


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        83 ~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      -.+.+.+....... ... ....+...+.|+..+++++..+|++++ +|+|+
T Consensus        98 ~tv~~~l~~~~~~~-~~~-~~~~LS~Ge~qrl~laral~~~p~lll-lDEPt  146 (202)
T cd03233          98 LTVRETLDFALRCK-GNE-FVRGISGGERKRVSIAEALVSRASVLC-WDNST  146 (202)
T ss_pred             CcHHHHHhhhhhhc-ccc-chhhCCHHHHHHHHHHHHHhhCCCEEE-EcCCC
Confidence            11122221111100 111 133456679999999999988998777 99998

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.61  E-value=5.8e-08  Score=74.84  Aligned_cols=29  Identities=31%  Similarity=0.635  Sum_probs=26.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++++.++.+++|+|++|||||||++.|+.
T Consensus         6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   34 (230)
T TIGR02770         6 NLSLKRGEVLALVGESGSGKSLTCLAILG   34 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            56678999999999999999999999993

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.61  E-value=1.3e-07  Score=72.32  Aligned_cols=118  Identities=21%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-----------------HHHHHcCChh------hHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-----------------RAEIKSGSEN------GTM   69 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-----------------~~~~~~~~~~------~~~   69 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |+...+.|++.                 +.......+.      ...
T Consensus        23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   99 (220)
T TIGR02982        23 DINLEINPGEIVILTGPSGSGKTTLLTLIG---GLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTA   99 (220)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCH
Confidence            335667899999999999999999999999   54333322211                 0111100000      011


Q ss_pred             HHHHH---HcCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           70 IQNMI---KEGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        70 ~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .++..   ........+...+.+.+.+..-+....   ....++..+.|+..+.+++..+|++++ +|+|+
T Consensus       100 ~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ill-lDEP~  169 (220)
T TIGR02982       100 RQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVL-ADEPT  169 (220)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            11110   001112222222233333333111111   122355669999999999999998888 99998

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=2.7e-07  Score=73.62  Aligned_cols=118  Identities=21%  Similarity=0.313  Sum_probs=65.8

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH------------------HHHHHc--CC---h-hhH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL------------------RAEIKS--GS---E-NGT   68 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~------------------~~~~~~--~~---~-~~~   68 (182)
                      +-++++.++.+++|.|++|||||||++.|+   |....+.|.+.                  +.....  +.   . ...
T Consensus        24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~  100 (288)
T PRK13643         24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLN---GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE  100 (288)
T ss_pred             eeEEEEcCCCEEEEECCCCChHHHHHHHHh---cCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccc
Confidence            446678999999999999999999999999   44333333221                  111110  00   0 011


Q ss_pred             HHHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           69 MIQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        69 ~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...+.+..+   ...+.......+.+.+...+......+    ..+..++|+..+++++..+|+++| +|+|+
T Consensus       101 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~ill-LDEPt  172 (288)
T PRK13643        101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLV-LDEPT  172 (288)
T ss_pred             hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence            112211111   112223233333444433221111122    345569999999999988998777 99998

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.61  E-value=1.3e-07  Score=81.93  Aligned_cols=120  Identities=18%  Similarity=0.257  Sum_probs=72.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEe---cHHHH----HHHHHHcCCh----hhHHHHHHHHcCC
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THL---SAGDL----LRAEIKSGSE----NGTMIQNMIKEGK   78 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~---~~~di----~~~~~~~~~~----~~~~~~~~~~~~~   78 (182)
                      -++.++++..++|+|++||||||+++.|.+-+..    ..+   +..++    +++.....++    ...++.+-+.-+.
T Consensus       348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~  427 (567)
T COG1132         348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR  427 (567)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCC
Confidence            3556789999999999999999999999966642    122   12222    2222221111    1222333333343


Q ss_pred             C-CCHHHHHHHHHHH-----HHh-cCCCcEEEe-C---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 I-VPSEVTIKLLQKA-----MEE-SGNDKFLID-G---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 ~-~~~~~~~~~l~~~-----l~~-~~~~~~ild-g---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      . ..++.+.+.++..     +.+ +++-...+. +   ....++|+..+++++-.+|.++| ||+++
T Consensus       428 ~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI-LDEaT  493 (567)
T COG1132         428 PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI-LDEAT  493 (567)
T ss_pred             CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE-Eeccc
Confidence            2 4566666555543     222 222222233 2   34569999999999988898888 99987

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.61  E-value=2.4e-07  Score=72.32  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (252)
T TIGR03005        18 GLNFSVAAGEKVALIGPSGSGKSTILRILMT   48 (252)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456788999999999999999999999993

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.61  E-value=1.6e-07  Score=74.11  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (269)
T PRK11831         26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGG   55 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999993

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.60  E-value=4.5e-08  Score=74.54  Aligned_cols=118  Identities=16%  Similarity=0.202  Sum_probs=63.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHc---C--ChhhHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKS---G--SENGTMIQNMIK   75 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~---~--~~~~~~~~~~~~   75 (182)
                      +-++.+.++.+++|.|++|||||||++.|+   |....+.|.++.+.            ...   .  ...+.+..+.+.
T Consensus        16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~   92 (213)
T TIGR01277        16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIA---GFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG   92 (213)
T ss_pred             eeEEEEeCCcEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence            345678899999999999999999999999   54433333221110            000   0  000111111111


Q ss_pred             cC---CCCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EG---KIVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~---~~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..   .........+.+.+.+..-+-   .......++..+.|+..+++++..+|++++ +|+|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-lDEPt  156 (213)
T TIGR01277        93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL-LDEPF  156 (213)
T ss_pred             hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence            10   001011111122222222110   011123456679999999999988998777 99998

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.60  E-value=4.4e-08  Score=73.81  Aligned_cols=31  Identities=23%  Similarity=0.202  Sum_probs=27.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (198)
T TIGR01189        19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGL   49 (198)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4667789999999999999999999999943

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.60  E-value=2.4e-08  Score=82.97  Aligned_cols=117  Identities=21%  Similarity=0.315  Sum_probs=64.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH----------HH----HHc-----CChhhHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR----------AE----IKS-----GSENGTMIQNMI   74 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~----------~~----~~~-----~~~~~~~~~~~~   74 (182)
                      -++.+.++.+++|.||+|||||||.+.|+   |+...+.|.+..          ..    +..     .........+.+
T Consensus        22 vs~~i~~Geiv~liGpNGaGKSTLLk~La---Gll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v   98 (402)
T PRK09536         22 VDLSVREGSLVGLVGPNGAGKTTLLRAIN---GTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVV   98 (402)
T ss_pred             eEEEECCCCEEEEECCCCchHHHHHHHHh---cCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHH
Confidence            35677899999999999999999999999   443333332210          01    110     000111222222


Q ss_pred             HcCC-----CCC--HHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KEGK-----IVP--SEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~~~-----~~~--~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+.     .+.  .....+.+.+.+...+....   -+..+...++|+..+++++..+|++++ ||+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL-LDEPt  167 (402)
T PRK09536         99 EMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL-LDEPT  167 (402)
T ss_pred             HhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence            2111     010  11122233333333111111   122355669999999999999998777 99998

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.60  E-value=7.8e-09  Score=76.67  Aligned_cols=108  Identities=19%  Similarity=0.332  Sum_probs=58.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK-AM   93 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l   93 (182)
                      ++++.++.+++|+|++|||||||++.|+   |....+.|++..+..... ............-...+.+.  .+... .+
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~i~~~~q~~--~~~~~~t~   93 (178)
T cd03229          20 SLNIEAGEIVALLGPSGSGKSTLLRCIA---GLEEPDSGSILIDGEDLT-DLEDELPPLRRRIGMVFQDF--ALFPHLTV   93 (178)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcc-ccchhHHHHhhcEEEEecCC--ccCCCCCH
Confidence            5677899999999999999999999999   654444444322111000 00000000000000000000  00000 00


Q ss_pred             HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..    . +.-.+...+.|+..+.+++..+|+++| +|+|+
T Consensus        94 ~~----~-l~~~lS~G~~qr~~la~al~~~p~lli-lDEP~  128 (178)
T cd03229          94 LE----N-IALGLSGGQQQRVALARALAMDPDVLL-LDEPT  128 (178)
T ss_pred             HH----h-eeecCCHHHHHHHHHHHHHHCCCCEEE-EeCCc
Confidence            00    0 000155678999999999988998777 99998

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.60  E-value=1.5e-06  Score=63.14  Aligned_cols=100  Identities=16%  Similarity=0.250  Sum_probs=62.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg-~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  102 (182)
                      ++=.+.+||||||++.+|++-|| +-++..|++-.+                      ......+...+.|.......++
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k----------------------~~~~f~~~~l~~L~~~~~~vVi   59 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK----------------------RKPKFIKAVLELLAKDTHPVVI   59 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC----------------------CHHHHHHHHHHHHhhCCCCEEE
Confidence            44468899999999999999999 888887766221                      1122233334444445677899


Q ss_pred             EeCCCCCHHHHHHHHHHhCC-CC-------cE----EEEEec-CH----HHHHHHHHhhh
Q 030176          103 IDGFPRNEENRAAFEAVTKI-EP-------EF----VLFFDC-SE----EEMERRILNRN  145 (182)
Q Consensus       103 ldg~~~~~~q~~~l~~~~~~-~~-------~~----vI~ld~-~~----~~l~~R~~~R~  145 (182)
                      .|.......++.++...+.. .+       .+    +-|... +.    +.+.+|+.+|.
T Consensus        60 aDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RG  119 (168)
T PF08303_consen   60 ADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARG  119 (168)
T ss_pred             EeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcC
Confidence            99876666666665544311 11       11    222222 22    67788999986

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.60  E-value=7.3e-07  Score=68.48  Aligned_cols=32  Identities=19%  Similarity=0.272  Sum_probs=28.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++++.++.+++|+|++|||||||++.|+..+
T Consensus        19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35677899999999999999999999999554

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.60  E-value=3e-07  Score=70.52  Aligned_cols=31  Identities=32%  Similarity=0.502  Sum_probs=27.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (228)
T cd03257          23 DVSFSIKKGETLGLVGESGSGKSTLARAILG   53 (228)
T ss_pred             CceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3466788999999999999999999999993

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.60  E-value=3.6e-08  Score=87.42  Aligned_cols=116  Identities=19%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      ++.++++..++|+|++|||||||++.|+..+   .++.|++              +++......+    ...++.+-+.-
T Consensus       477 ~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~---~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~  553 (694)
T TIGR01846       477 NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY---TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIAL  553 (694)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhc
Confidence            4567889999999999999999999999444   3333322              1222211111    12233332332


Q ss_pred             C-CCCCHHHHHHHHHHH-----HHh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G-KIVPSEVTIKLLQKA-----MEE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~-~~~~~~~~~~~l~~~-----l~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      + ...+++.+.+.++..     +.+ +. .+..+-++   .+..++|+..+++++..+|+++| ||+|+
T Consensus       554 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ili-lDEpt  621 (694)
T TIGR01846       554 CNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI-FDEAT  621 (694)
T ss_pred             CCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEE-EECCC
Confidence            2 234455555444432     222 22 22332222   45569999999999988998888 99998

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=4.2e-07  Score=72.57  Aligned_cols=118  Identities=21%  Similarity=0.261  Sum_probs=65.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH------------------HHHH--cCC----hhhH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR------------------AEIK--SGS----ENGT   68 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~------------------~~~~--~~~----~~~~   68 (182)
                      +-++++.++.+++|.|++|||||||++.|+   |....+.|++..                  ....  .+.    -...
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~  101 (290)
T PRK13634         25 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLN---GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE  101 (290)
T ss_pred             eEEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhh
Confidence            335678999999999999999999999999   443333332211                  1111  000    0011


Q ss_pred             HHHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           69 MIQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        69 ~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...+.+..+   ...+.+...+.+.+.+..-+-...+.+    .+...++|+..+++++..+|+++| +|+|+
T Consensus       102 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~lll-lDEPt  173 (290)
T PRK13634        102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLV-LDEPT  173 (290)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence            222211111   112232222333444433221111122    344569999999999989998877 99998

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.60  E-value=3.2e-07  Score=75.22  Aligned_cols=126  Identities=21%  Similarity=0.372  Sum_probs=75.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHH----------HHHHHH-----------cCChhhHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDL----------LRAEIK-----------SGSENGTMI   70 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di----------~~~~~~-----------~~~~~~~~~   70 (182)
                      +++..++..++|+|-+||||||+..+|.+-+   |-..+...++          ++..++           +....+..+
T Consensus       307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII  386 (534)
T COG4172         307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII  386 (534)
T ss_pred             eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence            4556788999999999999999999988655   3333333332          222222           111233333


Q ss_pred             HHHHHcCC-CCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176           71 QNMIKEGK-IVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus        71 ~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~  141 (182)
                      .+-+.-+. ........+.+.+.+...+.+.-..+    .|...+.|+..+++++..+|.+++ ||+|+..+-.=+
T Consensus       387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~-LDEPTSALD~SV  461 (534)
T COG4172         387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELIL-LDEPTSALDRSV  461 (534)
T ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEE-ecCCchHhhHHH
Confidence            33222222 33444444444444444332222233    455679999999999999998777 999997665433

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=1.4e-07  Score=74.78  Aligned_cols=117  Identities=19%  Similarity=0.283  Sum_probs=63.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHc--CC----hhhHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKS--GS----ENGTMIQNM   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~--~~----~~~~~~~~~   73 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|++.              ......  +.    .....+.+.
T Consensus        23 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~   99 (277)
T PRK13652         23 INFIAPRNSRIAVIGPNGAGKSTLFRHFN---GILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQD   99 (277)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHH
Confidence            35678899999999999999999999999   44333333221              111110  00    001111121


Q ss_pred             HHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +..+   .....+...+.+.+.+...+....   ....++..+.++..+++++..+|+++| +|+|+
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli-lDEPt  165 (277)
T PRK13652        100 IAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV-LDEPT  165 (277)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            1110   112222222222333322111111   123455679999999999988998887 99998

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=1.1e-08  Score=80.57  Aligned_cols=30  Identities=27%  Similarity=0.279  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   59 (265)
T PRK10575         30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGR   59 (265)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            356778999999999999999999999993

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.59  E-value=4.3e-08  Score=75.93  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~G   69 (236)
T cd03267          40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSG   69 (236)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999993

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PF05729 NACHT: NACHT domain

Probab=98.59  E-value=1.7e-07  Score=67.75  Aligned_cols=141  Identities=21%  Similarity=0.297  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcE-----------ecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH-----------LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~-----------~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   90 (182)
                      ++++|+|++|+||||+++.++..+....           +...+.-...    .  ...+.+.+..............+.
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~l~~~l~~~~~~~~~~~~~~~~   74 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSN----N--SRSLADLLFDQLPESIAPIEELLQ   74 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcc----c--cchHHHHHHHhhccchhhhHHHHH
Confidence            4689999999999999999987763211           1111111100    0  012222222221111122222334


Q ss_pred             HHHHhcCCCcEEEeCCCCCHH---------HHHHHHHHhCC--CCcEEEEEecCHHHH--HHHHHhhhccCCCCCcchHH
Q 030176           91 KAMEESGNDKFLIDGFPRNEE---------NRAAFEAVTKI--EPEFVLFFDCSEEEM--ERRILNRNQVRQKLPFSWGV  157 (182)
Q Consensus        91 ~~l~~~~~~~~ildg~~~~~~---------q~~~l~~~~~~--~~~~vI~ld~~~~~l--~~R~~~R~~~r~~~~~~~~~  157 (182)
                      ..+.....-.+++||+.....         ....+...+..  .+...+.+.+.+...  ..+..+....-...+.+.++
T Consensus        75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~  154 (166)
T PF05729_consen   75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED  154 (166)
T ss_pred             HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence            444445556788998632211         11223233322  344544455555444  44443332234556888999


Q ss_pred             HHHHHHHhhhh
Q 030176          158 FCLFIMLSFSS  168 (182)
Q Consensus       158 ~~~~~~~~~~~  168 (182)
                      -++|++..|..
T Consensus       155 ~~~~~~~~f~~  165 (166)
T PF05729_consen  155 IKQYLRKYFSN  165 (166)
T ss_pred             HHHHHHHHhhc
Confidence            99999888753

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.58  E-value=9.9e-08  Score=69.83  Aligned_cols=112  Identities=21%  Similarity=0.273  Sum_probs=65.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH------------cCChhhHHHHHH---------
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK------------SGSENGTMIQNM---------   73 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~------------~~~~~~~~~~~~---------   73 (182)
                      .+...++..++|+||+|||||||...||   |+...+.+++.-....            .....+..+|.+         
T Consensus        30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlA---GLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAl  106 (228)
T COG4181          30 ELVVKRGETVAIVGPSGSGKSTLLAVLA---GLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTAL  106 (228)
T ss_pred             eEEecCCceEEEEcCCCCcHHhHHHHHh---cCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhh
Confidence            4456788999999999999999999999   8777776655111000            001111111111         


Q ss_pred             -------HHcC--CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           74 -------IKEG--KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        74 -------~~~~--~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                             ...+  ..-+.+...+++..+....     -+.-||    ...+|+..+++++...|++++ -|+|+-
T Consensus       107 ENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~-----Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf-ADEPTG  175 (228)
T COG4181         107 ENVALPLELRGESSADSRAGAKALLEAVGLGK-----RLTHYPAQLSGGEQQRVALARAFAGRPDVLF-ADEPTG  175 (228)
T ss_pred             hhccchhhhcCCccccHHHHHHHHHHHhCccc-----ccccCccccCchHHHHHHHHHHhcCCCCEEe-ccCCCC
Confidence                   1111  1111222333343332221     134444    459999999999999998766 999973

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.58  E-value=1.6e-07  Score=73.08  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=27.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (247)
T TIGR00972        19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNR   49 (247)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3466789999999999999999999999993

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.58  E-value=9.8e-07  Score=69.11  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   54 (257)
T PRK10619         24 VSLQANAGDVISIIGSSGSGKSTFLRCINFL   54 (257)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567789999999999999999999999944

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.58  E-value=1.2e-07  Score=73.58  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=27.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   50 (242)
T TIGR03411        20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITG   50 (242)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3456788999999999999999999999993

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.58  E-value=2.1e-07  Score=67.59  Aligned_cols=115  Identities=17%  Similarity=0.292  Sum_probs=65.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh-----C----------CcEecHHHHHHHHHHcCChhhHHHHHHHHcC--
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF-----G----------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG--   77 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l-----g----------~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~--   77 (182)
                      .++.+.+..+++.||+|+|||||.+.|- .+     |          +...-.+.-+++   ...+.|+.++++-.+.  
T Consensus        22 ~l~~~~getlvllgpsgagkssllr~ln-lle~p~sg~l~ia~~~fd~s~~~~~k~i~~---lr~~vgmvfqqy~lwphl   97 (242)
T COG4161          22 TLDCPEGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSKTPSDKAIRD---LRRNVGMVFQQYNLWPHL   97 (242)
T ss_pred             eecCCCCCEEEEECCCCCchHHHHHHHH-HHhCCCCCeEEecccccccccCccHHHHHH---HHHhhhhhhhhhccCchh
Confidence            4566888999999999999999988763 22     1          111111111111   1223455555531111  


Q ss_pred             -------------CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           78 -------------KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        78 -------------~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                                   ...+++.......+.+.+-.... ..|.||    ..++|+..+++++..+|++++ +|+|+.
T Consensus        98 tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqrvaiaralmmkpqvll-fdepta  170 (242)
T COG4161          98 TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIARALMMEPQVLL-FDEPTA  170 (242)
T ss_pred             HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceecccchhhhHHHHHHHhcCCcEEe-ecCccc
Confidence                         11223333333333443322122 256655    459999999999999998777 999874

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.58  E-value=5.1e-08  Score=74.50  Aligned_cols=31  Identities=26%  Similarity=0.366  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~   53 (220)
T cd03245          23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL   53 (220)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3567789999999999999999999999943

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.58  E-value=8.3e-08  Score=79.99  Aligned_cols=118  Identities=18%  Similarity=0.268  Sum_probs=75.8

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC---------hhhHHH------------H
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS---------ENGTMI------------Q   71 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~---------~~~~~~------------~   71 (182)
                      +-++++.++.+-+|.|-+|+|||||.+.|.   |+...+.|+++.+......         .+|+..            +
T Consensus        22 ~V~l~v~~GeIHaLLGENGAGKSTLm~iL~---G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~E   98 (501)
T COG3845          22 DVSLSVKKGEIHALLGENGAGKSTLMKILF---GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAE   98 (501)
T ss_pred             ceeeeecCCcEEEEeccCCCCHHHHHHHHh---CcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhh
Confidence            346678999999999999999999999999   8888888776443222110         011111            1


Q ss_pred             HHHHc-----CCCCCHHHHHHHHHHHHHhcC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKE-----GKIVPSEVTIKLLQKAMEESG---NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~-----~~~~~~~~~~~~l~~~l~~~~---~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+..     +..++...+.+.+.+...+.+   .-.-.+...+...+|+.++.+++..+++++| ||+|+
T Consensus        99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI-LDEPT  168 (501)
T COG3845          99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI-LDEPT  168 (501)
T ss_pred             hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE-EcCCc
Confidence            11111     112234444455555544421   1122355677889999999999988999888 99998

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=5.9e-08  Score=77.12  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=27.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        26 v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~   56 (282)
T PRK13640         26 ISFSIPRGSWTALIGHNGSGKSTISKLINGL   56 (282)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence            3567789999999999999999999999944

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.57  E-value=1.7e-07  Score=77.44  Aligned_cols=116  Identities=16%  Similarity=0.260  Sum_probs=64.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH------------------HHHcC-------C--hh
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA------------------EIKSG-------S--EN   66 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~------------------~~~~~-------~--~~   66 (182)
                      -++++.++.+++|+|++|||||||++.|+   |+...+.|.++.+                  .....       .  ..
T Consensus        43 vsf~i~~Gei~~I~G~nGsGKSTLlr~L~---Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p  119 (382)
T TIGR03415        43 ASLDIEEGEICVLMGLSGSGKSSLLRAVN---GLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMP  119 (382)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCC
Confidence            35678899999999999999999999999   4433333322111                  11000       0  00


Q ss_pred             hHHHHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           67 GTMIQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        67 ~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+..+.+..+   ...+.......+.+.+..-+...+ .+.    ++..++|+..+++++..+|++++ +|+|+
T Consensus       120 ~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-~~~~~~~LSgGq~QRV~LARALa~~P~ILL-lDEPt  192 (382)
T TIGR03415       120 WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-ADKKPGELSGGMQQRVGLARAFAMDADILL-MDEPF  192 (382)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence            01111111111   012222222233333333221111 232    44569999999999999999887 99998

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.57  E-value=3.2e-08  Score=75.83  Aligned_cols=116  Identities=19%  Similarity=0.201  Sum_probs=61.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----------HHc---CC--hhhHHHHHHHHc--
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----------IKS---GS--ENGTMIQNMIKE--   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~----------~~~---~~--~~~~~~~~~~~~--   76 (182)
                      .++.+.++.+++|+|++|||||||++.|+   |....+.|.+..+.          ...   ..  .......+.+..  
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~   95 (223)
T TIGR03740        19 ISLTVPKNSVYGLLGPNGAGKSTLLKMIT---GILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHT   95 (223)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHH
Confidence            35677899999999999999999999999   44333333221100          000   00  000011111100  


Q ss_pred             -CCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 -GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 -~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       ....+.+.+.++++........+ .....++..+.++..+++++..+|++++ +|+|+
T Consensus        96 ~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~lll-lDEP~  152 (223)
T TIGR03740        96 TLLGLPDSRIDEVLNIVDLTNTGK-KKAKQFSLGMKQRLGIAIALLNHPKLLI-LDEPT  152 (223)
T ss_pred             HHcCCCHHHHHHHHHHcCCcHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEE-ECCCc
Confidence             00112222233332211110000 0122355668999999999988998777 99998

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.57  E-value=1e-07  Score=81.26  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        22 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G   51 (490)
T PRK10938         22 PSLTLNAGDSWAFVGANGSGKSALARALAG   51 (490)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            356778999999999999999999999993

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=1.1e-07  Score=75.64  Aligned_cols=117  Identities=23%  Similarity=0.372  Sum_probs=65.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH----------------HHHHHc--CCh----hhHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL----------------RAEIKS--GSE----NGTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~----------------~~~~~~--~~~----~~~~~~   71 (182)
                      -++++.++.+++|+|++|||||||++.|+   |+...+.|++.                +.....  +..    ......
T Consensus        25 vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~---Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~  101 (283)
T PRK13636         25 ININIKKGEVTAILGGNGAGKSTLFQNLN---GILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVY  101 (283)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHH
Confidence            35677899999999999999999999999   44333333211                111110  000    011122


Q ss_pred             HHHHcC---CCCCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+..+   ...+.+...+.+.+.+...+-..   .....++..+.|+..+++++..+|+++| +|+|+
T Consensus       102 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLi-lDEPt  169 (283)
T PRK13636        102 QDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV-LDEPT  169 (283)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            211111   11232222233344333321111   1133455669999999999988998887 99998

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.57  E-value=2.3e-08  Score=76.89  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=28.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~   52 (229)
T cd03254          21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRF   52 (229)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34667889999999999999999999999943

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=3.6e-07  Score=72.20  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=27.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (271)
T PRK13638         19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSG   49 (271)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            3456778999999999999999999999993

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.56  E-value=2.9e-08  Score=78.18  Aligned_cols=31  Identities=23%  Similarity=0.324  Sum_probs=27.3

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   56 (265)
T PRK10253         26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL   56 (265)
T ss_pred             cceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            3567789999999999999999999999943

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.56  E-value=2.4e-08  Score=86.68  Aligned_cols=116  Identities=20%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      ++.++++..++|+|++|||||||++.|+..+   ..+.|.+              ++.......+    ...++.+-+.-
T Consensus       335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~  411 (569)
T PRK10789        335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHF---DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIAL  411 (569)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhc
Confidence            4567899999999999999999999999443   3333322              1111111111    11222332322


Q ss_pred             C-CCCCHHHHHHHHHHH-----HHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G-KIVPSEVTIKLLQKA-----MEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~-~~~~~~~~~~~l~~~-----l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      + ....++.+...++..     +.+ +.+-...++    .....++|+..+++++..+|+++| ||+|+
T Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill-lDEpt  479 (569)
T PRK10789        412 GRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI-LDDAL  479 (569)
T ss_pred             CCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EECcc
Confidence            2 223444444433321     111 122122222    144569999999999988999888 99988

>PLN03232 ABC transporter C family member; Provisional

Probab=98.56  E-value=4.2e-08  Score=93.27  Aligned_cols=119  Identities=15%  Similarity=0.185  Sum_probs=68.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCCC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGKI   79 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~~   79 (182)
                      ++.++++..++|+|++|||||||++.|.+-+.    -..++.-|+       ++..+...++.    ..++++-+.-+..
T Consensus      1256 sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~ 1335 (1495)
T PLN03232       1256 SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE 1335 (1495)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCC
Confidence            45678899999999999999999999985442    112222111       22222211111    1122222222234


Q ss_pred             CCHHHHHHHHHHH-----HHh-c-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           80 VPSEVTIKLLQKA-----MEE-S-GNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        80 ~~~~~~~~~l~~~-----l~~-~-~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+++.+.+.++..     +.+ + +.+..+-++   +..+++|+.++++++-.+|.++| ||+++
T Consensus      1336 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILI-LDEAT 1399 (1495)
T PLN03232       1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILV-LDEAT 1399 (1495)
T ss_pred             CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence            5566666555532     222 1 122232222   45569999999999988898777 99986

>PLN03130 ABC transporter C family member; Provisional

Probab=98.55  E-value=4.8e-08  Score=93.26  Aligned_cols=119  Identities=13%  Similarity=0.157  Sum_probs=69.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCCh----hhHHHHHHHHcCCC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSE----NGTMIQNMIKEGKI   79 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~----~~~~~~~~~~~~~~   79 (182)
                      +++++++..|+|+|++|||||||++.|.+-+.    -..++.-|+       ++..+...++    ..-++++-+.-+..
T Consensus      1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~ 1338 (1622)
T PLN03130       1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE 1338 (1622)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCC
Confidence            55678999999999999999999999985442    112222111       2222221111    11122222222334


Q ss_pred             CCHHHHHHHHHHH-----HHh-c-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           80 VPSEVTIKLLQKA-----MEE-S-GNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        80 ~~~~~~~~~l~~~-----l~~-~-~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..++.+.++++..     +.+ + +.+..|-++   +..+++|+.++++++-.+|.++| ||+++
T Consensus      1339 ~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILI-LDEAT 1402 (1622)
T PLN03130       1339 HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILV-LDEAT 1402 (1622)
T ss_pred             CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence            4566666655532     222 1 222232232   45569999999999988898777 99986

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.55  E-value=3.7e-07  Score=74.86  Aligned_cols=118  Identities=21%  Similarity=0.266  Sum_probs=63.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------------HHc--C-Ch--hhHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------------IKS--G-SE--NGTM   69 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------------~~~--~-~~--~~~~   69 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |+...+.|.+..+.                  ...  + ..  ....
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~ia---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t   91 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA---GLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS   91 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence            345677889999999999999999999999   54433333321100                  000  0 00  0111


Q ss_pred             HHHHHHcCC-CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           70 IQNMIKEGK-IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        70 ~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+.+..+. ........+.+.+.+..-.-...   ....+...++|+..+++++..+|++++ ||+|+
T Consensus        92 v~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll-LDEPt  159 (354)
T TIGR02142        92 VRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL-MDEPL  159 (354)
T ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EcCCC
Confidence            222111110 01111111122233322111111   112345569999999999999998777 99998

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.55  E-value=8e-08  Score=82.94  Aligned_cols=118  Identities=17%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~   75 (182)
                      -+++++++..++|+|++|||||||++.|+..+   ..+.|++              +++......+    ...+..+-+.
T Consensus       337 ~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~  413 (544)
T TIGR01842       337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIW---PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIA  413 (544)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHh
Confidence            35667899999999999999999999999544   2322222              1111111111    1112222222


Q ss_pred             -cCCCCCHHHHHHHHHH-----HHHh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           76 -EGKIVPSEVTIKLLQK-----AMEE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        76 -~~~~~~~~~~~~~l~~-----~l~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                       .+....++.+.+.++.     .+.. +.+ +..+-+   .....++|+..+++++..+|+++| +|+|+.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili-lDEpts  483 (544)
T TIGR01842       414 RFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV-LDEPNS  483 (544)
T ss_pred             ccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCcc
Confidence             1222344444333332     2222 111 222222   145569999999999988999888 999983

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.55  E-value=8.4e-08  Score=84.30  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=61.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH----cC-----ChhhHHHHHHHHc-CCCCCHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK----SG-----SENGTMIQNMIKE-GKIVPSE   83 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~----~~-----~~~~~~~~~~~~~-~~~~~~~   83 (182)
                      ++.+.++.+++|+||+|||||||++.|+   |....+.|.+.... ..    .+     ........+.+.. .......
T Consensus       332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~  408 (638)
T PRK10636        332 KLNLVPGSRIGLLGRNGAGKSTLIKLLA---GELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQ  408 (638)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHH
Confidence            4567889999999999999999999999   54333333332110 00    00     0000011111110 0001111


Q ss_pred             HHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        84 ~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+..++............-+......++++..+++++..+|+++| ||+|+
T Consensus       409 ~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLl-LDEPt  458 (638)
T PRK10636        409 KLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLL-LDEPT  458 (638)
T ss_pred             HHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence            222222222111000001123455679999999999988998877 99997

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.54  E-value=4.3e-08  Score=75.15  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=66.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc---------CChhhHHHHH------------
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---------GSENGTMIQN------------   72 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~---------~~~~~~~~~~------------   72 (182)
                      -+++..++.+++|.||+|+||||+.+.++   |+...+.|.+..+....         .....+++|.            
T Consensus        23 Vsl~v~~Gei~~LIGPNGAGKTTlfNlit---G~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlEN   99 (250)
T COG0411          23 VSLEVRPGEIVGLIGPNGAGKTTLFNLIT---GFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLEN   99 (250)
T ss_pred             eeEEEcCCeEEEEECCCCCCceeeeeeec---ccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHH
Confidence            35677899999999999999999999999   66656655543322210         0001111111            


Q ss_pred             H-------------HHcCCC-CCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 M-------------IKEGKI-VPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ~-------------~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .             +..... ...+...+...+.+..-+.   ..-.....+...+.+.++++++..+|.+++ ||+|.
T Consensus       100 v~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLL-LDEPa  177 (250)
T COG0411         100 VAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLL-LDEPA  177 (250)
T ss_pred             HHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEE-ecCcc
Confidence            0             000000 0122333333333333111   111122356678888899999999998776 99997

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=2.4e-07  Score=74.94  Aligned_cols=31  Identities=29%  Similarity=0.494  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        45 vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl   75 (320)
T PRK13631         45 ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL   75 (320)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567789999999999999999999999943

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.54  E-value=2.5e-07  Score=71.38  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (234)
T cd03251          21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRF   51 (234)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3567789999999999999999999999943

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.54  E-value=2e-07  Score=71.04  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=26.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.+ .+++|+|++|||||||++.|+.
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G   45 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAG   45 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhC
Confidence            44667788 9999999999999999999993

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.53  E-value=5.9e-08  Score=76.12  Aligned_cols=30  Identities=30%  Similarity=0.459  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   50 (258)
T PRK13548         21 VSLTLRPGEVVAILGPNGAGKSTLLRALSG   50 (258)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999994

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.53  E-value=3.7e-07  Score=70.73  Aligned_cols=31  Identities=35%  Similarity=0.488  Sum_probs=27.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (243)
T TIGR01978        18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG   48 (243)
T ss_pred             ccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456788999999999999999999999993

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=7.2e-07  Score=71.10  Aligned_cols=118  Identities=15%  Similarity=0.162  Sum_probs=64.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH------------------HHHH--cCCh----hhH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR------------------AEIK--SGSE----NGT   68 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~------------------~~~~--~~~~----~~~   68 (182)
                      +-++++.++.+++|.|++|||||||.+.|+   |....+.|++..                  ....  .+..    ...
T Consensus        25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~  101 (287)
T PRK13641         25 NISFELEEGSFVALVGHTGSGKSTLMQHFN---ALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN  101 (287)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccc
Confidence            335678999999999999999999999999   543333332211                  0111  0000    001


Q ss_pred             HHHHHHHc---CCCCCHHHHHHHHHHHHHhcCCC-cE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           69 MIQNMIKE---GKIVPSEVTIKLLQKAMEESGND-KF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        69 ~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...+.+..   ......+...+.+.+.+..-... ..   -...++..++|+..+++++..+|+++| +|+|+
T Consensus       102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLl-LDEPt  173 (287)
T PRK13641        102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILC-LDEPA  173 (287)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence            11221111   01122222222233333331111 01   122345669999999999988998777 99998

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.53  E-value=3.8e-07  Score=71.20  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=28.0

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++++.++.+++|+|++|||||||++.|+..
T Consensus        21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (253)
T TIGR02323        21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR   52 (253)
T ss_pred             cceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34667889999999999999999999999943

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.53  E-value=5e-08  Score=84.64  Aligned_cols=119  Identities=19%  Similarity=0.284  Sum_probs=66.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEecH---HHH----HHHHHHcCChh----hHHHHHHHHcC-C
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLSA---GDL----LRAEIKSGSEN----GTMIQNMIKEG-K   78 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~~~---~di----~~~~~~~~~~~----~~~~~~~~~~~-~   78 (182)
                      ++++.++..++|+|++|||||||++.|+..+..    ..++.   .++    +++....-++.    ..++.+-+.-+ .
T Consensus       360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~  439 (576)
T TIGR02204       360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP  439 (576)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC
Confidence            456789999999999999999999999965521    11221   111    11111111111    11122212212 1


Q ss_pred             CCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 IVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 ~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+++.+.+.++..     +.. +.+ +..+-++   ....+.|+..+++++..+|+++| +|+|+
T Consensus       440 ~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ili-lDEpt  504 (576)
T TIGR02204       440 DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILL-LDEAT  504 (576)
T ss_pred             CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEE-EeCcc
Confidence            23444444444432     222 112 2222222   34469999999999988898888 99987

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=3.5e-07  Score=72.40  Aligned_cols=118  Identities=22%  Similarity=0.348  Sum_probs=65.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH---------------HHHHHHc---CCh---hhHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL---------------LRAEIKS---GSE---NGTMIQ   71 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di---------------~~~~~~~---~~~---~~~~~~   71 (182)
                      +-++++.++.+++|.|++|||||||++.|+   |....+.|++               ++.....   ...   .+....
T Consensus        20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~   96 (274)
T PRK13644         20 NINLVIKKGEYIGIIGKNGSGKSTLALHLN---GLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE   96 (274)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence            345678899999999999999999999999   4433333322               1111110   000   011222


Q ss_pred             HHHHcC---CCCCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+..+   ...+.....+.+.+.+..-+...   .....++..+.|+..+++++..+|++++ +|+|+
T Consensus        97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-LDEPt  164 (274)
T PRK13644         97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI-FDEVT  164 (274)
T ss_pred             HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            211111   11222222233333333211111   1123455679999999999988998777 99998

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=3.9e-07  Score=72.29  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=27.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        25 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G   55 (280)
T PRK13649         25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG   55 (280)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3456778999999999999999999999994

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.53  E-value=3.9e-07  Score=71.45  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=28.0

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++++.++.+++|.|++|||||||++.|+..
T Consensus        24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (258)
T PRK11701         24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSAR   55 (258)
T ss_pred             eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34667889999999999999999999999943

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=2e-08  Score=78.49  Aligned_cols=30  Identities=23%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        24 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (255)
T PRK11300         24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTG   53 (255)
T ss_pred             eeeEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence            356678999999999999999999999993

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.53  E-value=1.4e-07  Score=82.98  Aligned_cols=40  Identities=28%  Similarity=0.307  Sum_probs=31.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |....+.|.+
T Consensus        19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~---G~~~pd~G~I   58 (638)
T PRK10636         19 NATATINPGQKVGLVGKNGCGKSTLLALLK---NEISADGGSY   58 (638)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceE
Confidence            446678899999999999999999999999   5444444444

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.53  E-value=4.8e-08  Score=92.47  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=29.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      +++++++..++|+|++||||||+++.|.+-|..
T Consensus      1188 sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1188 TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            567789999999999999999999999976653

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.53  E-value=2.5e-08  Score=77.05  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=27.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G   49 (236)
T cd03253          19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFR   49 (236)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3356778999999999999999999999993

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.52  E-value=7.7e-08  Score=91.63  Aligned_cols=119  Identities=13%  Similarity=0.138  Sum_probs=69.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCCC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGKI   79 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~~   79 (182)
                      +++++++..++|+|++|||||||++.|.+-+.    -..++.-|+       ++..+..-++.    .-++++-+.-...
T Consensus      1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~ 1385 (1522)
T TIGR00957      1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ 1385 (1522)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccC
Confidence            55678999999999999999999999985442    122222111       22222211111    1122222221123


Q ss_pred             CCHHHHHHHHHHH-----HHh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           80 VPSEVTIKLLQKA-----MEE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        80 ~~~~~~~~~l~~~-----l~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+++.+.+.++..     +.+ ++ .+..+-++   +..+++|+.++++++-.+|.++| ||+++
T Consensus      1386 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILi-LDEaT 1449 (1522)
T TIGR00957      1386 YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILV-LDEAT 1449 (1522)
T ss_pred             CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence            5566666655542     111 12 23332231   45569999999999988898777 99986

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.52  E-value=7e-08  Score=70.02  Aligned_cols=91  Identities=20%  Similarity=0.342  Sum_probs=58.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   93 (182)
                      .++.+.++.+++|+|++||||||+++.|+   |....+.+++.....                  ...... .   .. .
T Consensus        18 ~~~~i~~g~~~~i~G~nGsGKStll~~l~---g~~~~~~G~i~~~~~------------------~~~~~~-~---~~-~   71 (157)
T cd00267          18 VSLTLKAGEIVALVGPNGSGKSTLLRAIA---GLLKPTSGEILIDGK------------------DIAKLP-L---EE-L   71 (157)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCE------------------EcccCC-H---HH-H
Confidence            35667889999999999999999999999   544333333311110                  000000 0   00 0


Q ss_pred             HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..   ...++..+...+.++..+.+++...|++++ +|+|+
T Consensus        72 ~~---~i~~~~qlS~G~~~r~~l~~~l~~~~~i~i-lDEp~  108 (157)
T cd00267          72 RR---RIGYVPQLSGGQRQRVALARALLLNPDLLL-LDEPT  108 (157)
T ss_pred             Hh---ceEEEeeCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            01   122233366778889999999888898777 99998

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.52  E-value=1.4e-07  Score=82.64  Aligned_cols=29  Identities=21%  Similarity=0.346  Sum_probs=26.6

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++++.++.+++|+|++|||||||++.|+.
T Consensus       344 s~~i~~Ge~~~lvG~nGsGKSTLlk~i~G  372 (623)
T PRK10261        344 SFDLWPGETLSLVGESGSGKSTTGRALLR  372 (623)
T ss_pred             EeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            56778999999999999999999999993

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=5.7e-07  Score=71.69  Aligned_cols=31  Identities=35%  Similarity=0.401  Sum_probs=27.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   60 (289)
T PRK13645         30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL   60 (289)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3567789999999999999999999999943

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.52  E-value=1.5e-07  Score=80.63  Aligned_cols=118  Identities=12%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-----------H----HHcCCh-----hhHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----------E----IKSGSE-----NGTMIQN   72 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-----------~----~~~~~~-----~~~~~~~   72 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |+...+.|.+..+           .    .....+     ......+
T Consensus        23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   99 (510)
T PRK09700         23 SVNLTVYPGEIHALLGENGAGKSTLMKVLS---GIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLE   99 (510)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHc---CCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHH
Confidence            336677899999999999999999999999   5443333332110           0    000000     0111222


Q ss_pred             HHHcCC-------C---CCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 MIKEGK-------I---VPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ~~~~~~-------~---~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+..+.       .   .......+.+.+.+..-+-.   ..-+..+...++|+..+++++..+|+++| ||+|+
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll-LDEPt  173 (510)
T PRK09700        100 NLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVII-MDEPT  173 (510)
T ss_pred             HhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            221110       0   01112222333333331111   11123455669999999999999998777 99998

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=2.3e-07  Score=73.53  Aligned_cols=118  Identities=22%  Similarity=0.314  Sum_probs=63.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHH--cCCh----hhHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIK--SGSE----NGTMIQN   72 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~--~~~~----~~~~~~~   72 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |......|++.              +....  .+..    ....+.+
T Consensus        25 ~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e  101 (277)
T PRK13642         25 GVSFSITKGEWVSIIGQNGSGKSTTARLID---GLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVED  101 (277)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHH
Confidence            345677899999999999999999999999   43333333221              11011  0000    0001111


Q ss_pred             HHHc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 MIKE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+..   ......+...+.+...+...+...+   -...++..++|+..+++++..+|+++| +|+|+
T Consensus       102 ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll-lDEPt  168 (277)
T PRK13642        102 DVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII-LDEST  168 (277)
T ss_pred             HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            1110   1112222222223333332111111   122345568999999999988998777 99997

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.51  E-value=2.1e-07  Score=68.37  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +-+++..++.+.+|+|.+|||||||.++|+.++
T Consensus        24 ~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl   56 (258)
T COG4107          24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL   56 (258)
T ss_pred             ccceeecCCcEEEEEecCCCcHHhHHHHHhccc
Confidence            446778999999999999999999999999666

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.51  E-value=8e-08  Score=74.30  Aligned_cols=32  Identities=31%  Similarity=0.416  Sum_probs=27.8

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++++.++.+++|+|++|||||||++.|+..
T Consensus        20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (237)
T cd03252          20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF   51 (237)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            33567789999999999999999999999943

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=2.5e-07  Score=72.12  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=27.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247         21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             cceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            34567789999999999999999999999944

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=1.6e-07  Score=74.55  Aligned_cols=118  Identities=20%  Similarity=0.333  Sum_probs=64.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH---------------HHHHc--CCh----hhHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR---------------AEIKS--GSE----NGTMIQ   71 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~---------------~~~~~--~~~----~~~~~~   71 (182)
                      +-++++.++.+++|+|++|||||||.+.|+   |....+.|++..               .....  +..    ......
T Consensus        28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~  104 (280)
T PRK13633         28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMN---ALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVE  104 (280)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHH
Confidence            345677899999999999999999999999   543333332211               10110  000    001111


Q ss_pred             HHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+..+   ...+.....+.+.+.+...+-...   ....++..+.|+..+++++..+|+++| +|+|+
T Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-lDEPt  172 (280)
T PRK13633        105 EDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECII-FDEPT  172 (280)
T ss_pred             HHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            111111   011222222223333322111111   123455669999999999988998777 99998

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=3.4e-07  Score=76.80  Aligned_cols=138  Identities=15%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh--CCcE---ecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH----HHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTH---LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS----EVT   85 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l--g~~~---~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   85 (182)
                      .+....++.++++|++|+|||||.++|+..-  ++..   +..+++...  ...........+++.....+..    +.+
T Consensus       100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~--~~~l~~D~~~~dfl~~e~~l~~~~~l~ei  177 (582)
T KOG0062|consen  100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEAL--QSVLESDTERLDFLAEEKELLAGLTLEEI  177 (582)
T ss_pred             ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHH--hhhhhccHHHHHHHHhhhhhhccchHHHH
Confidence            4556789999999999999999999999621  1111   111111111  1112222333333333322211    111


Q ss_pred             HH-HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHH
Q 030176           86 IK-LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIML  164 (182)
Q Consensus        86 ~~-~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (182)
                      .. +|..+...+....-=+..+...=+-+..+++++-.+||+++ ||+|++-|             |.....+++.||.+
T Consensus       178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLL-LDEPTNhL-------------Dv~av~WLe~yL~t  243 (582)
T KOG0062|consen  178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLL-LDEPTNHL-------------DVVAVAWLENYLQT  243 (582)
T ss_pred             HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEe-ecCCcccc-------------hhHHHHHHHHHHhh
Confidence            11 22221111000000022344444556689999988999888 99996544             44556777777765


Q ss_pred             hhhh
Q 030176          165 SFSS  168 (182)
Q Consensus       165 ~~~~  168 (182)
                      +=.+
T Consensus       244 ~~~T  247 (582)
T KOG0062|consen  244 WKIT  247 (582)
T ss_pred             CCce
Confidence            5433

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.50  E-value=8.5e-08  Score=82.21  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=63.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-----------HHcC----Ch-----hhHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-----------IKSG----SE-----NGTMIQNM   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-----------~~~~----~~-----~~~~~~~~   73 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |....+.|++..+.           ....    .+     ......+.
T Consensus        30 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~  106 (510)
T PRK15439         30 IDFTLHAGEVHALLGGNGAGKSTLMKIIA---GIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKEN  106 (510)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHH
Confidence            35667899999999999999999999999   55434444332110           0000    00     01111121


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +..+.... ....+.+.+.+..-.-...   -+..+...++|+..+++++..+|+++| ||+|+
T Consensus       107 l~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll-LDEPt  168 (510)
T PRK15439        107 ILFGLPKR-QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI-LDEPT  168 (510)
T ss_pred             hhcccccc-hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence            11111001 1111223333332111111   122345569999999999988998777 99998

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.50  E-value=3.3e-07  Score=70.35  Aligned_cols=32  Identities=31%  Similarity=0.420  Sum_probs=27.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        32 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   63 (226)
T cd03248          32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENF   63 (226)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            33567889999999999999999999999944

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.50  E-value=1.6e-07  Score=72.76  Aligned_cols=117  Identities=20%  Similarity=0.256  Sum_probs=62.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH------------HHHHHcCCh-----hhHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL------------RAEIKSGSE-----NGTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~------------~~~~~~~~~-----~~~~~~~~~~~   76 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|.+.            +.......+     .+....+.+..
T Consensus        19 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~   95 (237)
T TIGR00968        19 VNLEVPTGSLVALLGPSGSGKSTLLRIIA---GLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAF   95 (237)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHh
Confidence            35678899999999999999999999999   43322222211            000000000     01111111111


Q ss_pred             CC---CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK---IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~---~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..   ........+.+.+.+...+....   ....++..+.++..+.+++..+|++++ +|+|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll-lDEP~  158 (237)
T TIGR00968        96 GLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL-LDEPF  158 (237)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            10   11111122223333333111111   122355669999999999988998888 99998

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=1.6e-07  Score=79.22  Aligned_cols=121  Identities=20%  Similarity=0.321  Sum_probs=71.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHH-------HHHHHHcCChhh-----HHHHHHHHcCC
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDL-------LRAEIKSGSENG-----TMIQNMIKEGK   78 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~---~~~~~~di-------~~~~~~~~~~~~-----~~~~~~~~~~~   78 (182)
                      -+++++++..++|.|++||||||+.+.|.+-+.+   ..++.-|+       +|..+.-.++-+     ..+.+..-.+.
T Consensus       371 vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~  450 (591)
T KOG0057|consen  371 VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP  450 (591)
T ss_pred             eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC
Confidence            3667899999999999999999999999987742   34444444       222222222221     11222111123


Q ss_pred             CCCHHHHHHHHHHHHH-----h-cCC-CcEEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           79 IVPSEVTIKLLQKAME-----E-SGN-DKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        79 ~~~~~~~~~~l~~~l~-----~-~~~-~~~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      ...++.+.+..+....     + +++ ...+=+ |  ....++|+..+.+++-.+|.+++ +|+++.
T Consensus       451 sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~-~DEaTS  516 (591)
T KOG0057|consen  451 SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL-LDEATS  516 (591)
T ss_pred             CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE-ecCccc
Confidence            3456666666554321     1 111 000000 1  23569999999999988888777 999863

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.50  E-value=1.6e-07  Score=82.40  Aligned_cols=33  Identities=15%  Similarity=0.424  Sum_probs=28.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +-++++.++.+++|+|++|||||||++.|+..+
T Consensus        34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll   66 (623)
T PRK10261         34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLL   66 (623)
T ss_pred             eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            346677899999999999999999999999544

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.50  E-value=9.1e-08  Score=80.71  Aligned_cols=120  Identities=14%  Similarity=0.234  Sum_probs=72.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChh---------------------hHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN---------------------GTMIQN   72 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~---------------------~~~~~~   72 (182)
                      -+++..++.+.+++|-+|+|||||.|.|+   |....+.|+++.+........                     -...++
T Consensus        27 v~l~v~~GEV~aL~GeNGAGKSTLmKiLs---Gv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeN  103 (500)
T COG1129          27 VSLTVRPGEVHALLGENGAGKSTLMKILS---GVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAEN  103 (500)
T ss_pred             ceeEEeCceEEEEecCCCCCHHHHHHHHh---CcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHH
Confidence            35667899999999999999999999999   777677776644322111000                     001111


Q ss_pred             H-H----Hc-CCCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           73 M-I----KE-GKIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        73 ~-~----~~-~~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                      . +    .. ...++.....+...+.+..-...   ...+...+..++|..++++++..++.++| +|+|+..|
T Consensus       104 ifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI-lDEPTaaL  176 (500)
T COG1129         104 IFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI-LDEPTAAL  176 (500)
T ss_pred             hhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCcccC
Confidence            1 1    11 11233444455555555442111   11122344559999999999988887666 99998433

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.49  E-value=6e-08  Score=82.94  Aligned_cols=117  Identities=18%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-----------HHHc----CCh-----hhHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----------EIKS----GSE-----NGTMIQNM   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-----------~~~~----~~~-----~~~~~~~~   73 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|.+..+           ....    ..+     ......+.
T Consensus        23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~   99 (501)
T PRK10762         23 AALNVYPGRVMALVGENGAGKSTMMKVLT---GIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAEN   99 (501)
T ss_pred             eeEEEcCCeEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHH
Confidence            35677899999999999999999999999   5433333332111           0000    000     01112222


Q ss_pred             HHcCC-------CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEGK-------IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +..+.       ........+.+.+.+..-+-...   -+..++..++|+..+++++..+|++++ ||+|+
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt  169 (501)
T PRK10762        100 IFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII-MDEPT  169 (501)
T ss_pred             hhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            21110       01112122223333333211111   123355669999999999999998777 99998

>PRK13409 putative ATPase RIL; Provisional

Probab=98.49  E-value=3.4e-07  Score=79.72  Aligned_cols=36  Identities=31%  Similarity=0.311  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      .+.++.+++|.|++||||||+++.|+   |....+.|++
T Consensus        95 ~i~~Gev~gLvG~NGaGKSTLlkiL~---G~l~p~~G~i  130 (590)
T PRK13409         95 IPKEGKVTGILGPNGIGKTTAVKILS---GELIPNLGDY  130 (590)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHh---CCccCCCccc
Confidence            56788999999999999999999999   6655555665

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.49  E-value=2.1e-07  Score=68.74  Aligned_cols=117  Identities=22%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHH--------------HHHHHHcCChhhHHHHHHHHc
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDL--------------LRAEIKSGSENGTMIQNMIKE   76 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l-----g~~~~~~~di--------------~~~~~~~~~~~~~~~~~~~~~   76 (182)
                      +....+.+|.|.|.+||||||+.+++- -+     |-..+...++              .+.........++.++.+-.+
T Consensus        27 L~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLW  105 (256)
T COG4598          27 LQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLW  105 (256)
T ss_pred             eecCCCCEEEEecCCCCchhHHHHHHH-hhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchh
Confidence            345678899999999999999998873 22     1111111111              011111122334444443111


Q ss_pred             C---------------CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           77 G---------------KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        77 ~---------------~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      .               ...+.....+.....+.+.+-..- -+.||    ..++|+..+++++..+|++.+ +|+|+.
T Consensus       106 sHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek-~~~YP~~LSGGQQQR~aIARaLameP~vmL-FDEPTS  181 (256)
T COG4598         106 SHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK-ADAYPAHLSGGQQQRVAIARALAMEPEVML-FDEPTS  181 (256)
T ss_pred             HHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh-hhcCccccCchHHHHHHHHHHHhcCCceEe-ecCCcc
Confidence            1               012233334444444433110000 12233    459999999999999997655 999984

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=2e-07  Score=72.94  Aligned_cols=30  Identities=17%  Similarity=0.318  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        21 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   50 (255)
T PRK11231         21 LSLSLPTGKITALIGPNGCGKSTLLKCFAR   50 (255)
T ss_pred             eeeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            356678999999999999999999999994

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.49  E-value=1.1e-07  Score=80.93  Aligned_cols=116  Identities=21%  Similarity=0.248  Sum_probs=63.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH------HcCChhhHHHHHHHHcC---CCCCHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI------KSGSENGTMIQNMIKEG---KIVPSEVT   85 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~   85 (182)
                      ++.+.++.+++|+|++|||||||++.|+   |....+.|.+..+..      ...........+.+...   .....+..
T Consensus        44 SfsI~~GEivgIiGpNGSGKSTLLkiLa---GLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~  120 (549)
T PRK13545         44 SFEVPEGEIVGIIGLNGSGKSTLSNLIA---GVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKI  120 (549)
T ss_pred             EEEEeCCCEEEEEcCCCCCHHHHHHHHh---CCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHH
Confidence            5567899999999999999999999999   554444443321110      00000001111111110   11222222


Q ss_pred             HHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           86 IKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        86 ~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+.+.+...+....   -+..+...+.|+..+++++..+|+++| ||+|+
T Consensus       121 ~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLL-LDEPT  171 (549)
T PRK13545        121 KEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV-IDEAL  171 (549)
T ss_pred             HHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence            2222223222111001   123455679999999999988998877 99998

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.49  E-value=2.6e-07  Score=71.47  Aligned_cols=117  Identities=19%  Similarity=0.261  Sum_probs=62.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------H---Hc---C-Chh-hHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------I---KS---G-SEN-GTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~---~~---~-~~~-~~~~~~~~~~   76 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|++..+.         .   ..   . ... .....+.+..
T Consensus        18 is~~i~~Ge~~~i~G~nG~GKStLl~~l~---G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~   94 (235)
T cd03299          18 VSLEVERGDYFVILGPTGSGKSVLLETIA---GFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAY   94 (235)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHH
Confidence            35677899999999999999999999999   54444444321110         0   00   0 000 0011111110


Q ss_pred             ---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 ---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                         ..........+.+.+.+....-...   -...++..++++..+++++...|++++ +|+|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-lDEPt  157 (235)
T cd03299          95 GLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL-LDEPF  157 (235)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE-ECCCc
Confidence               0001111111122222222111111   122355669999999999988998777 99998

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.49  E-value=2.6e-07  Score=71.00  Aligned_cols=31  Identities=32%  Similarity=0.458  Sum_probs=27.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~   56 (226)
T cd03234          26 VSLHVESGQVMAILGSSGSGKTTLLDAISGR   56 (226)
T ss_pred             ceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence            3667889999999999999999999999943

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13409 putative ATPase RIL; Provisional

Probab=98.49  E-value=8.2e-08  Score=83.56  Aligned_cols=114  Identities=15%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcC-CCCC-HHHHHH
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEG-KIVP-SEVTIK   87 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~-~~~~-~~~~~~   87 (182)
                      +.+.++.+++|+|++|||||||++.|+   |....+.|.+..+. ..     .......+..+.+... .... .....+
T Consensus       360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~---Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  436 (590)
T PRK13409        360 GEIYEGEVIGIVGPNGIGKTTFAKLLA---GVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSE  436 (590)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHH
Confidence            345788999999999999999999999   54433444332110 00     0001111222222111 0111 111122


Q ss_pred             HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        88 ~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ++......... ..-+......++|+..+++++..+|+++| ||+|+
T Consensus       437 ~L~~l~l~~~~-~~~~~~LSGGe~QRvaiAraL~~~p~llL-LDEPt  481 (590)
T PRK13409        437 IIKPLQLERLL-DKNVKDLSGGELQRVAIAACLSRDADLYL-LDEPS  481 (590)
T ss_pred             HHHHCCCHHHH-hCCcccCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            22221111000 01133455679999999999999998887 99998

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=1.5e-07  Score=81.04  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH------cC----ChhhHHHHHHHHc--CCCCCH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK------SG----SENGTMIQNMIKE--GKIVPS   82 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~------~~----~~~~~~~~~~~~~--~~~~~~   82 (182)
                      ++.+.++.+++|+|++|||||||++.|+   |+...+.|.+......      ..    ........+.+..  ......
T Consensus       339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~---G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~  415 (530)
T PRK15064        339 NLLLEAGERLAIIGENGVGKTTLLRTLV---GELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDE  415 (530)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccH
Confidence            4567889999999999999999999999   5543334433211100      00    0000111111111  011112


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        83 ~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+.+++............-+......++|+..+++++..+|+++| ||+|+
T Consensus       416 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll-LDEPt  466 (530)
T PRK15064        416 QAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV-MDEPT  466 (530)
T ss_pred             HHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence            2222333222110000011133455679999999999988998777 99997

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.48  E-value=1.2e-07  Score=73.44  Aligned_cols=29  Identities=21%  Similarity=0.478  Sum_probs=26.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      -++.+.++.+++|+|++|||||||++.|+
T Consensus        24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   52 (237)
T PRK11614         24 VSLHINQGEIVTLIGANGAGKTTLLGTLC   52 (237)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence            35677899999999999999999999999

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.48  E-value=3.6e-07  Score=72.26  Aligned_cols=31  Identities=32%  Similarity=0.449  Sum_probs=27.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (272)
T PRK15056         25 DASFTVPGGSIAALVGVNGSGKSTLFKALMG   55 (272)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456778999999999999999999999993

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.48  E-value=1.6e-07  Score=80.04  Aligned_cols=117  Identities=13%  Similarity=0.194  Sum_probs=65.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-----------HHHc----CCh-----hhHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----------EIKS----GSE-----NGTMIQNM   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-----------~~~~----~~~-----~~~~~~~~   73 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |....+.|.+..+           ....    ..+     ......+.
T Consensus        17 vs~~i~~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~   93 (491)
T PRK10982         17 VNLKVRPHSIHALMGENGAGKSTLLKCLF---GIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDN   93 (491)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHc---CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHH
Confidence            45677899999999999999999999999   5433333332110           0010    000     01111121


Q ss_pred             HHcCC------CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEGK------IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~~------~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +..+.      ........+.+.+.+..-.-...   -+..++..++|+..+++++..+|+++| +|+|+
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll-LDEPt  162 (491)
T PRK10982         94 MWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI-MDEPT  162 (491)
T ss_pred             hhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE-EeCCC
Confidence            11110      01222222333344433211111   123355669999999999988998777 99998

>PHA03136 thymidine kinase; Provisional

Probab=98.48  E-value=1.7e-05  Score=64.83  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=32.7

Q ss_pred             CCcEEEEEecCHHHHHHHHHhhhccCCCCCcc-------hHHHHHHHHHhhhhh
Q 030176          123 EPEFVLFFDCSEEEMERRILNRNQVRQKLPFS-------WGVFCLFIMLSFSSC  169 (182)
Q Consensus       123 ~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~-------~~~~~~~~~~~~~~~  169 (182)
                      .||.+||++.+.+++.+|+.+|  +|+-+..+       .+.|+.|+.++.+.+
T Consensus       191 ~pD~IIyL~l~~e~~~~RI~kR--gR~~E~I~~~YL~~L~~~Y~~~~nt~~yl~  242 (378)
T PHA03136        191 HGGNIVIMDLDECEHAERIIAR--GRPGEAIDVRFLCALHNIYICFMNTITYAK  242 (378)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHc--CCCccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            5889999999999999999999  66655443       334555555555554

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.48  E-value=6.8e-07  Score=70.09  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      .+.++.+++|+|++|||||||++.|+   |+...+.|.+
T Consensus        22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~---Gl~~p~~G~I   57 (255)
T cd03236          22 VPREGQVLGLVGPNGIGKSTALKILA---GKLKPNLGKF   57 (255)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHh---CCcCCCCceE
Confidence            36789999999999999999999999   6655555554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.48  E-value=8.7e-08  Score=68.73  Aligned_cols=126  Identities=19%  Similarity=0.282  Sum_probs=67.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH------cCChhhHHHHHHHHcCC---------C
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK------SGSENGTMIQNMIKEGK---------I   79 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~------~~~~~~~~~~~~~~~~~---------~   79 (182)
                      .+++.++.++.|+||+|||||||...+...+.-.+-..+.++-....      .+.+.|..+++.+....         .
T Consensus        22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fA  101 (213)
T COG4136          22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFA  101 (213)
T ss_pred             eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEe
Confidence            45678899999999999999999998886664222222222111111      12234444444321110         0


Q ss_pred             CC----HHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176           80 VP----SEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (182)
Q Consensus        80 ~~----~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~  142 (182)
                      ++    .+...+.....+.+....+. -+.    ....++.+..+.+++-..|..++ ||+|+..+-.-++
T Consensus       102 lp~~~KG~aRr~~a~aAL~~~gL~g~-f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL-LDEPFS~LD~ALR  170 (213)
T COG4136         102 LPATLKGNARRNAANAALERSGLDGA-FHQDPATLSGGQRARVALLRALLAQPKALL-LDEPFSRLDVALR  170 (213)
T ss_pred             cCcccccHHHHhhHHHHHHHhccchh-hhcChhhcCcchHHHHHHHHHHHhCcceee-eCCchhHHHHHHH
Confidence            11    11111222222222111111 111    23447777788888766786666 9999988776654

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.48  E-value=7.3e-08  Score=87.94  Aligned_cols=119  Identities=22%  Similarity=0.313  Sum_probs=70.1

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCC-
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGK-   78 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~-   78 (182)
                      ++.++++..++|+|++||||||+.+.|.+-|.    -..+|..|+       ++..+....+.    ...+.+-+..|. 
T Consensus       373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~  452 (1228)
T KOG0055|consen  373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP  452 (1228)
T ss_pred             EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC
Confidence            56789999999999999999999999986663    333443332       22222222221    222223233333 


Q ss_pred             CCCHHHHHHHHHHHH-----Hh--cCCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 IVPSEVTIKLLQKAM-----EE--SGNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 ~~~~~~~~~~l~~~l-----~~--~~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ....+.+.++.+...     ..  .+.+..+-++   ....++|+.++++++..+|.+++ ||+++
T Consensus       453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILL-LDEaT  517 (1228)
T KOG0055|consen  453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILL-LDEAT  517 (1228)
T ss_pred             cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEE-ecCcc
Confidence            223444444432211     11  1122233332   34569999999999998998777 99987

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.48  E-value=9e-08  Score=72.30  Aligned_cols=108  Identities=20%  Similarity=0.326  Sum_probs=60.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHHHcCC-hhhHHHHH---HHHcC-CCCCHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGS-ENGTMIQN---MIKEG-KIVPSEVT   85 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~~~~~-~~~~~~~~---~~~~~-~~~~~~~~   85 (182)
                      +-++++.++.+++|+|++|||||||++.|+   |..  ..+.|.+..+...... ......+.   +.... ...+.-..
T Consensus        18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~   94 (200)
T cd03217          18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIM---GHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKN   94 (200)
T ss_pred             ccceEECCCcEEEEECCCCCCHHHHHHHHh---CCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccH
Confidence            345677899999999999999999999999   542  2333333221110000 00000000   00000 00111111


Q ss_pred             HHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        86 ~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                          .+.+..      ....++..+.|+..+++++..+|++++ +|+|+
T Consensus        95 ----~~~l~~------~~~~LS~G~~qrv~laral~~~p~ill-lDEPt  132 (200)
T cd03217          95 ----ADFLRY------VNEGFSGGEKKRNEILQLLLLEPDLAI-LDEPD  132 (200)
T ss_pred             ----HHHHhh------ccccCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence                111111      123456679999999999988998777 99998

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PTZ00243 ABC transporter; Provisional

Probab=98.48  E-value=1.2e-07  Score=90.44  Aligned_cols=120  Identities=13%  Similarity=0.188  Sum_probs=67.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCCC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGKI   79 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~~   79 (182)
                      +++++++..|+|+|++|||||||++.|.+-+.    -..++.-|+       ++..+...++.    .-++++-+.-...
T Consensus      1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~ 1409 (1560)
T PTZ00243       1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE 1409 (1560)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccC
Confidence            35678899999999999999999999984442    112222111       22222211111    1223232222233


Q ss_pred             CCHHHHHHHHHHH-----HHh-cC-CCcEEEe---CCCCCHHHHHHHHHHhCCC-CcEEEEEecCHH
Q 030176           80 VPSEVTIKLLQKA-----MEE-SG-NDKFLID---GFPRNEENRAAFEAVTKIE-PEFVLFFDCSEE  135 (182)
Q Consensus        80 ~~~~~~~~~l~~~-----l~~-~~-~~~~ild---g~~~~~~q~~~l~~~~~~~-~~~vI~ld~~~~  135 (182)
                      ..++.+.++++..     +.+ +. .+..+-+   .+...++|+.++++++-.+ +.++| ||+++.
T Consensus      1410 ~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILl-LDEATS 1475 (1560)
T PTZ00243       1410 ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFIL-MDEATA 1475 (1560)
T ss_pred             CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEE-EeCCCc
Confidence            4566666665542     111 11 1222222   1455699999999998764 66666 999863

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=1.7e-06  Score=67.57  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=27.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (252)
T PRK14256         23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRM   53 (252)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3567889999999999999999999999954

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.48  E-value=1.4e-07  Score=71.80  Aligned_cols=39  Identities=28%  Similarity=0.537  Sum_probs=32.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL   56 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~   56 (182)
                      ++..+++.++.+.|++|+||||+.+.++   |......|.+.
T Consensus        23 sl~v~~Geiv~llG~NGaGKTTlLkti~---Gl~~~~~G~I~   61 (237)
T COG0410          23 SLEVERGEIVALLGRNGAGKTTLLKTIM---GLVRPRSGRII   61 (237)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeeEE
Confidence            5667899999999999999999999999   76665555553

>PLN03073 ABC transporter F family; Provisional

Probab=98.48  E-value=9.5e-08  Score=84.82  Aligned_cols=116  Identities=19%  Similarity=0.200  Sum_probs=62.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH----------cCChhhHH-HHHHHHcCCCCCHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----------SGSENGTM-IQNMIKEGKIVPSE   83 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~   83 (182)
                      ++.+.++.+++|+|++|||||||++.|+   |....+.|.+......          ........ .............+
T Consensus       529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~---Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~  605 (718)
T PLN03073        529 NFGIDLDSRIAMVGPNGIGKSTILKLIS---GELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ  605 (718)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHH
Confidence            4567888999999999999999999999   5443334433211000          00000000 00000000112233


Q ss_pred             HHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        84 ~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+..++............-+......++|+..+++++..+|+++| ||+|+
T Consensus       606 ~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL-LDEPT  655 (718)
T PLN03073        606 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL-LDEPS  655 (718)
T ss_pred             HHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence            333333322111000000123355669999999999988998887 99998

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.47  E-value=3.3e-07  Score=70.88  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=28.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++++.++.+++|+|++|||||||++.|+..
T Consensus        21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   52 (238)
T cd03249          21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERF   52 (238)
T ss_pred             ceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            34667889999999999999999999999943

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=7e-08  Score=82.63  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHH---------------HHHHcCCh-----hhHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLR---------------AEIKSGSE-----NGTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~--~~~di~~---------------~~~~~~~~-----~~~~~~   71 (182)
                      -++++.++.+++|+|++|||||||++.|+   |+...  +.|.+..               .......+     ......
T Consensus        24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~  100 (506)
T PRK13549         24 VSLKVRAGEIVSLCGENGAGKSTLMKVLS---GVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVL  100 (506)
T ss_pred             eeEEEeCCeEEEEECCCCCCHHHHHHHHh---CCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHH
Confidence            35677899999999999999999999999   54322  2333211               00110000     011122


Q ss_pred             HHHHcCC------CCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKEGK------IVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~~~------~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+..+.      ..+.+...+.+.+.+..-+..   ..-+..+...++|+..+++++..+|+++| ||+|+
T Consensus       101 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll-LDEPt  171 (506)
T PRK13549        101 ENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLI-LDEPT  171 (506)
T ss_pred             HHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence            2221111      112222223333444332111   11123455669999999999999998777 99998

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.47  E-value=1.6e-07  Score=81.84  Aligned_cols=116  Identities=18%  Similarity=0.246  Sum_probs=65.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++..++|+|++|||||||++.|+..+   ..+.|++              +++......+    ...++.+-+..
T Consensus       355 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~  431 (585)
T TIGR01192       355 SFEAKAGQTVAIVGPTGAGKTTLINLLQRVY---DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRL  431 (585)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHccCC---CCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhc
Confidence            4567899999999999999999999999443   2322222              1111111110    11222232222


Q ss_pred             C-CCCCHHHHHHHHHH-----HHHh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G-KIVPSEVTIKLLQK-----AMEE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~-~~~~~~~~~~~l~~-----~l~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      + ....++...+.++.     .+.. +.+ +..+-+   .....++|+..+++++..+|+++| +|+|+
T Consensus       432 ~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ili-lDEpt  499 (585)
T TIGR01192       432 GREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV-LDEAT  499 (585)
T ss_pred             CCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence            2 22344444443332     1211 111 112112   134569999999999988998888 99998

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.47  E-value=1.7e-07  Score=80.26  Aligned_cols=116  Identities=13%  Similarity=0.177  Sum_probs=65.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH---------HHHHcCChhhHHHHHHHHcCC-CCCHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR---------AEIKSGSENGTMIQNMIKEGK-IVPSEV   84 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~   84 (182)
                      ++.+.++..|+|+||+|+|||||.+.|+...+-.   .|.+..         +............-+++.... ...+..
T Consensus       342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~  418 (530)
T COG0488         342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQE  418 (530)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHH
Confidence            4556889999999999999999999997554311   111100         000000001112222222222 222445


Q ss_pred             HHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        85 ~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +...+...+........-+......++-+..++..+...|+++| ||+|+
T Consensus       419 ~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi-LDEPT  467 (530)
T COG0488         419 VRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL-LDEPT  467 (530)
T ss_pred             HHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE-EcCCC
Confidence            55555554433211111234455678888889888888898888 99996

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.46  E-value=1.6e-07  Score=71.70  Aligned_cols=31  Identities=16%  Similarity=0.377  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   50 (218)
T cd03290          20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGE   50 (218)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3567789999999999999999999999943

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=9.3e-07  Score=70.03  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G   50 (275)
T PRK13639         20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNG   50 (275)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3356788999999999999999999999993

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.46  E-value=4.9e-07  Score=70.83  Aligned_cols=30  Identities=20%  Similarity=0.378  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laG   52 (258)
T PRK14241         23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNR   52 (258)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            356778999999999999999999999994

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.46  E-value=2.5e-07  Score=71.43  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=27.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||.+.|+..
T Consensus        19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~   49 (232)
T cd03300          19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF   49 (232)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3556788999999999999999999999944

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.46  E-value=1e-07  Score=74.63  Aligned_cols=31  Identities=29%  Similarity=0.296  Sum_probs=27.3

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        20 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   50 (256)
T TIGR03873        20 VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA   50 (256)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            3567789999999999999999999999943

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=3.9e-07  Score=71.47  Aligned_cols=29  Identities=24%  Similarity=0.411  Sum_probs=26.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++.+.++.+++|+|++|||||||++.|+.
T Consensus        30 s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG   58 (257)
T PRK14246         30 TIKIPNNSIFGIMGPSGSGKSTLLKVLNR   58 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            45678899999999999999999999993

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.45  E-value=3.1e-06  Score=66.10  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=27.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++.+.++.+++|+|++|||||||++.|+..
T Consensus        26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         26 SLEFEQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             eEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            556789999999999999999999999954

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.45  E-value=2.1e-07  Score=79.67  Aligned_cols=117  Identities=16%  Similarity=0.191  Sum_probs=64.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------HHHH----cCCh-----hhHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------AEIK----SGSE-----NGTMIQNM   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------~~~~----~~~~-----~~~~~~~~   73 (182)
                      -++++.++.+++|+|++|||||||++.|+   |....+.|.+..           ....    ...+     ......+.
T Consensus        23 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~   99 (501)
T PRK11288         23 ISFDCRAGQVHALMGENGAGKSTLLKILS---GNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAEN   99 (501)
T ss_pred             eeEEEeCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHH
Confidence            35677899999999999999999999999   543333333211           0000    0000     01111121


Q ss_pred             HHcCC------CCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEGK------IVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~~------~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +..+.      ..+.....+.+.+.+..-+-.   ...+..+...++|+..+++++..+|+++| ||+|+
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll-LDEPt  168 (501)
T PRK11288        100 LYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA-FDEPT  168 (501)
T ss_pred             HHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEE-EcCCC
Confidence            11110      012222222333333331111   11123455679999999999988998777 99998

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.45  E-value=4.8e-07  Score=70.65  Aligned_cols=29  Identities=17%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ....+.+|+|+|++|+||||+|+.|...+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll  106 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALL  106 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence            45677899999999999999999988766

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=4.6e-08  Score=84.16  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=27.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        19 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G   49 (530)
T PRK15064         19 NISVKFGGGNRYGLIGANGCGKSTFMKILGG   49 (530)
T ss_pred             CCEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3466788999999999999999999999994

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=5.1e-07  Score=70.51  Aligned_cols=31  Identities=19%  Similarity=0.310  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3567789999999999999999999999943

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.44  E-value=2.9e-06  Score=66.92  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++++.++.+++|+|++|||||||++.|+..+
T Consensus        39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            35667899999999999999999999999543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.43  E-value=1.8e-07  Score=73.16  Aligned_cols=31  Identities=32%  Similarity=0.665  Sum_probs=27.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|+|++|||||||++.|+.
T Consensus        21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   51 (254)
T PRK10418         21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALG   51 (254)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3356788999999999999999999999993

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.43  E-value=2.3e-06  Score=67.21  Aligned_cols=31  Identities=23%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   62 (260)
T PRK10744         32 INLDIAKNQVTAFIGPSGCGKSTLLRTFNRM   62 (260)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3567789999999999999999999999944

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.43  E-value=1.6e-05  Score=61.04  Aligned_cols=125  Identities=19%  Similarity=0.284  Sum_probs=65.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHH--
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK--   91 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l---g~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--   91 (182)
                      ....+|+++|.||.|||++|+.|.+-|   |+  ..++.|++-+........... +...-..+....++.+...+.+  
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~f-f~p~n~~~~~~R~~~a~~~l~dl~   88 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEF-FDPDNEEAKKLREQIAKEALEDLI   88 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGG-GSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccccccccc-CCCCChHHHHHHHHHHHHHHHHHH
Confidence            455789999999999999999998755   44  468889888877664211100 0000000000111222233333  


Q ss_pred             -HHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEe--cCHHHHHHHHHhh
Q 030176           92 -AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD--CSEEEMERRILNR  144 (182)
Q Consensus        92 -~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld--~~~~~l~~R~~~R  144 (182)
                       -+...++.+.|.|+.....+.+..+.+.......-++|+.  |+.+.++++-..+
T Consensus        89 ~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~  144 (222)
T PF01591_consen   89 EWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIRE  144 (222)
T ss_dssp             HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHH
T ss_pred             HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHH
Confidence             2333567899999988888888887776533333455564  4555555544443

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.43  E-value=2.2e-07  Score=72.87  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=26.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++.+.++.+++|+|++|||||||++.|+..
T Consensus        41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (257)
T cd03288          41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRM   70 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence            566789999999999999999999999943

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=5.5e-07  Score=70.23  Aligned_cols=31  Identities=16%  Similarity=0.285  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14251         23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            3567789999999999999999999999943

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.43  E-value=2.2e-07  Score=79.52  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=26.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++.+.++.+++|+|++|||||||++.|+.
T Consensus       273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G  301 (501)
T PRK11288        273 SFSVRAGEIVGLFGLVGAGRSELMKLLYG  301 (501)
T ss_pred             eEEEeCCcEEEEEcCCCCCHHHHHHHHcC
Confidence            45678899999999999999999999994

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.43  E-value=1.5e-07  Score=73.88  Aligned_cols=33  Identities=24%  Similarity=0.382  Sum_probs=28.2

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..+
T Consensus        22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             cceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            345677899999999999999999999999443

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.42  E-value=4.2e-07  Score=80.25  Aligned_cols=116  Identities=16%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---HH--cCC---hhhHHHHHHHHcCC--------
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---IK--SGS---ENGTMIQNMIKEGK--------   78 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---~~--~~~---~~~~~~~~~~~~~~--------   78 (182)
                      ++++.++.+++|+|++|||||||++.|+   |+...+.|.+....   ..  .+.   ..+ ...+.+..+.        
T Consensus       472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~---Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~  547 (659)
T TIGR00954       472 SFEVPSGNHLLICGPNGCGKSSLFRILG---ELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRR  547 (659)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhcc
Confidence            4567889999999999999999999999   54333444432211   00  000   011 2222222211        


Q ss_pred             CCCHHHHHHHHHHH-----HHhcCCCcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           79 IVPSEVTIKLLQKA-----MEESGNDKFLI---DGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        79 ~~~~~~~~~~l~~~-----l~~~~~~~~il---dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      ...++.+.++++..     +....+-....   +.....++|+..+++++..+|+++| ||+|+.
T Consensus       548 ~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill-LDEpts  611 (659)
T TIGR00954       548 GLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI-LDECTS  611 (659)
T ss_pred             CCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE-EeCCcc
Confidence            12233333333322     11111101111   2355669999999999988998777 999983

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=2.8e-06  Score=66.26  Aligned_cols=31  Identities=29%  Similarity=0.363  Sum_probs=27.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   53 (252)
T PRK14272         23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRM   53 (252)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3567789999999999999999999999954

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.42  E-value=4.6e-07  Score=77.68  Aligned_cols=29  Identities=17%  Similarity=0.210  Sum_probs=26.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++.+.++.+++|+|++|||||||++.|+.
T Consensus       283 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~G  311 (510)
T PRK09700        283 SFSVCRGEILGFAGLVGSGRTELMNCLFG  311 (510)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            55678999999999999999999999993

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.41  E-value=1.6e-06  Score=64.80  Aligned_cols=119  Identities=18%  Similarity=0.231  Sum_probs=68.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCChh-----------------hHHHHHHHHcCCCCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSEN-----------------GTMIQNMIKEGKIVP   81 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg-~~~~~~~di~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~   81 (182)
                      +-.+|+|.|-..|||||||+.|.+.|+ ...+..||.+..........                 ...+.-++......+
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~   82 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP   82 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence            346889999999999999999999885 56777777765444321110                 111111222222222


Q ss_pred             H--HHHHHH--HHHHHH-----hcCCCcEEEeCCC--CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           82 S--EVTIKL--LQKAME-----ESGNDKFLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        82 ~--~~~~~~--l~~~l~-----~~~~~~~ildg~~--~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      +  +..+..  +.....     ......+++|||-  .-..+..        ..|..|.+..|.+++.+|...|..
T Consensus        83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~--------~~d~~im~~~~y~~~krRr~~Rt~  150 (225)
T KOG3308|consen   83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD--------LFDRIIMLTLDYETCKRRREARTY  150 (225)
T ss_pred             hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh--------hhhhheeeeccHHHHHHhhccccc
Confidence            1  111100  111111     1235678899962  2222222        136777799999999999998864

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=4.6e-06  Score=65.01  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             eeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence            356778999999999999999999999984

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.41  E-value=9.1e-08  Score=76.11  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH---cCCh-hhHHHHHHHHcCCCCCHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK---SGSE-NGTMIQNMIKEGKIVPSEVTIKLL   89 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l   89 (182)
                      ++.+.++.+++|+|++|||||||++.|+   |....+.|.+.... ..   .... ......+.+..+.........+.+
T Consensus        57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~---Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l  133 (282)
T cd03291          57 NLKIEKGEMLAITGSTGSGKTSLLMLIL---GELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVV  133 (282)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHH
Confidence            5567899999999999999999999999   54333333321100 00   0000 000111111111111111111111


Q ss_pred             H-----HHHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           90 Q-----KAMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        90 ~-----~~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .     ..+.. .......++    ..+..+.|+..+++++..+|+++| +|+|+
T Consensus       134 ~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLi-LDEPt  187 (282)
T cd03291         134 KACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYL-LDSPF  187 (282)
T ss_pred             HHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence            1     11111 011111122    345568999999999988998888 99998

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.41  E-value=9.9e-07  Score=64.61  Aligned_cols=118  Identities=18%  Similarity=0.261  Sum_probs=66.8

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------------------------------
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-------------------------------   61 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-------------------------------   61 (182)
                      +-++....+..+++.||+|+||||+.+.|...|.   ++.|.++-+..+                               
T Consensus        29 ~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRvi  105 (235)
T COG4778          29 NVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVI  105 (235)
T ss_pred             ceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhc
Confidence            3455677889999999999999999999986653   333332111110                               


Q ss_pred             -cCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCCcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176           62 -SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (182)
Q Consensus        62 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ild--g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~  136 (182)
                       .........+..+..|  .+.+........++.+-  ...-|-+-  .|....+|+..+.+.+..+.-+++ ||+|+..
T Consensus       106 PRV~aLdVvaePll~~g--v~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILL-LDEPTas  182 (235)
T COG4778         106 PRVSALDVVAEPLLARG--VPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILL-LDEPTAS  182 (235)
T ss_pred             cCcchHHHHHhHHHHcC--CCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEE-ecCCccc
Confidence             0011112222233333  23333333334444331  11222222  466779999999999877665555 9999843

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.40  E-value=3.4e-07  Score=80.51  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d   54 (182)
                      +-++.+.++.+++|+|++|||||||+++|+   |....+.|.
T Consensus        21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriia---G~~~p~~G~   59 (635)
T PRK11147         21 NAELHIEDNERVCLVGRNGAGKSTLMKILN---GEVLLDDGR   59 (635)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHc---CCCCCCCeE
Confidence            345677899999999999999999999999   544344443

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=1.7e-06  Score=67.68  Aligned_cols=31  Identities=19%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (254)
T PRK14273         26 INIKILKNSITALIGPSGCGKSTFLRTLNRM   56 (254)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3567789999999999999999999999943

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.40  E-value=6.1e-07  Score=76.93  Aligned_cols=40  Identities=20%  Similarity=0.360  Sum_probs=32.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      +.++.+.++..|+|+|.+|||||||.+.|+   |....+.|++
T Consensus        21 ~~~l~~~~G~riGLvG~NGaGKSTLLkila---G~~~~~~G~i   60 (530)
T COG0488          21 NVSLTLNPGERIGLVGRNGAGKSTLLKILA---GELEPDSGEV   60 (530)
T ss_pred             CCcceeCCCCEEEEECCCCCCHHHHHHHHc---CCCcCCCCeE
Confidence            456677889999999999999999999999   5444444444

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.40  E-value=3.8e-07  Score=78.36  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl   49 (520)
T TIGR03269        19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGM   49 (520)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            4567789999999999999999999999954

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=3.6e-06  Score=65.56  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=27.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+.++.+++|+|++|||||||++.|+.
T Consensus        21 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         21 NVTMKIFKNQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             eeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3466778999999999999999999999994

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.39  E-value=3e-07  Score=72.80  Aligned_cols=30  Identities=23%  Similarity=0.380  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        20 vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG   49 (272)
T PRK13547         20 LSLRIEPGRVTALLGRNGAGKSTLLKALAG   49 (272)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999994

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.39  E-value=1.5e-07  Score=82.64  Aligned_cols=116  Identities=16%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH----cC----ChhhHHHHHHHHcCC---CCC-
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK----SG----SENGTMIQNMIKEGK---IVP-   81 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~----~~----~~~~~~~~~~~~~~~---~~~-   81 (182)
                      ++.+.++.+++|+|++|||||||++.|+   |....+.|.+.... ..    .+    ........+.+....   ... 
T Consensus       339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~  415 (635)
T PRK11147        339 SAQVQRGDKIALIGPNGCGKTTLLKLML---GQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNG  415 (635)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccc
Confidence            5567899999999999999999999999   54333444332210 00    00    000011111111110   001 


Q ss_pred             -HHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           82 -SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        82 -~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       ...+..++............-+......++++..+++++...|+++| ||+|+
T Consensus       416 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl-LDEPt  468 (635)
T PRK11147        416 RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI-LDEPT  468 (635)
T ss_pred             hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence             11122222221110000001123456679999999999988898777 99998

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.38  E-value=3.8e-07  Score=78.53  Aligned_cols=32  Identities=22%  Similarity=0.450  Sum_probs=27.8

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++.+.++.+++|+|++|||||||++.|+..
T Consensus        27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~   58 (529)
T PRK15134         27 DVSLQIEAGETLALVGESGSGKSVTALSILRL   58 (529)
T ss_pred             ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            33567789999999999999999999999943

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=3.3e-07  Score=74.44  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +-++++.++.+++|.|++|||||||++.|+..+
T Consensus        25 ~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         25 RVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence            335678999999999999999999999999543

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=1.9e-06  Score=67.57  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=27.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+.++.+++|+|++|||||||++.|+..+
T Consensus        32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4567899999999999999999999999543

>PLN03232 ABC transporter C family member; Provisional

Probab=98.38  E-value=3.5e-07  Score=87.08  Aligned_cols=116  Identities=15%  Similarity=0.245  Sum_probs=67.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--HHHHHcCCh----hhHHHHHHHHcCCCCCHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--RAEIKSGSE----NGTMIQNMIKEGKIVPSEVTIKL   88 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   88 (182)
                      ++.++++.+++|+|++|||||||++.|...+   ....|.+.  +.......+    ...++++-+..+...+++...+.
T Consensus       637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~---~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~v  713 (1495)
T PLN03232        637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGEL---SHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRA  713 (1495)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---cccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHH
Confidence            4567899999999999999999999999544   22222211  111110000    11223333333444455544444


Q ss_pred             HHHH-----HHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           89 LQKA-----MEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        89 l~~~-----l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ++..     +.. +++....+..    ....++|+..++|++-.+|++++ ||+|+
T Consensus       714 l~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlL-LDEpt  768 (1495)
T PLN03232        714 IDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI-FDDPL  768 (1495)
T ss_pred             HHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence            4322     111 2232222321    44569999999999988999888 99987

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=1.1e-06  Score=68.47  Aligned_cols=31  Identities=16%  Similarity=0.324  Sum_probs=27.3

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         21 INMQIEQNKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3567788999999999999999999999943

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.37  E-value=2.3e-07  Score=80.25  Aligned_cols=116  Identities=16%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---HH--cC----ChhhHHHHHHHHcCC---CCC-
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---IK--SG----SENGTMIQNMIKEGK---IVP-   81 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---~~--~~----~~~~~~~~~~~~~~~---~~~-   81 (182)
                      ++.+.++.+++|.|++|||||||++.|+   |....+.|.+....   ..  .+    ........+.+....   ... 
T Consensus       342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~---G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~  418 (552)
T TIGR03719       342 SFKLPPGGIVGVIGPNGAGKSTLFRMIT---GQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGK  418 (552)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHc---CCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCc
Confidence            4567889999999999999999999999   54433444332210   00  00    000111222221111   011 


Q ss_pred             -HHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           82 -SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        82 -~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       .....+++............-+..+...++++..+++++..+|+++| ||+|+
T Consensus       419 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll-LDEPt  471 (552)
T TIGR03719       419 REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL-LDEPT  471 (552)
T ss_pred             chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE-EeCCC
Confidence             11111222221110000011123455679999999999999998888 99997

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=2.2e-06  Score=71.19  Aligned_cols=113  Identities=14%  Similarity=0.195  Sum_probs=67.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH----------HcCChhhHHHHHHHHcCCCCCHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----------KSGSENGTMIQNMIKEGKIVPSEVTIKL   88 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (182)
                      -....|+|+||+|+||||+++.|..++   -...+++-.+..          ........+..+++.....+|.+.....
T Consensus       611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl---~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~  687 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVGKSTLLKLLIGKL---DPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQ  687 (807)
T ss_pred             cccceeEEECCCCccHHHHHHHHhcCC---CCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHH
Confidence            445689999999999999999998443   344444321110          0000111222335555666666655555


Q ss_pred             HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        89 l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      |-......-...+-+-.....+..+..++......||++| ||+|+.
T Consensus       688 LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlI-LDEPTN  733 (807)
T KOG0066|consen  688 LGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLI-LDEPTN  733 (807)
T ss_pred             hhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEE-ecCCCC
Confidence            4433333222334344556778888888887777899888 999874

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.36  E-value=8.6e-07  Score=69.27  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~   52 (182)
                      +-++++|++.++++.|++|+||||..|.|.   |....+.
T Consensus        42 disf~IP~G~ivgflGaNGAGKSTtLKmLT---Gll~p~~   78 (325)
T COG4586          42 DISFEIPKGEIVGFLGANGAGKSTTLKMLT---GLLLPTS   78 (325)
T ss_pred             eeeeecCCCcEEEEEcCCCCcchhhHHHHh---CccccCC
Confidence            446788999999999999999999999999   5444433

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.36  E-value=6.8e-06  Score=59.52  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ++.+|+++||+|+||-||.......+.
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~   30 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLA   30 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhc
Confidence            688999999999999999888777663

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=1e-05  Score=64.10  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        40 vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G   69 (276)
T PRK14271         40 VSMGFPARAVTSLMGPTGSGKTTFLRTLNR   69 (276)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            356778999999999999999999999994

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.36  E-value=4.9e-07  Score=77.30  Aligned_cols=117  Identities=13%  Similarity=0.127  Sum_probs=64.3

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHH-----------H----HHcCCh-----hhHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRA-----------E----IKSGSE-----NGTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~--~~~di~~~-----------~----~~~~~~-----~~~~~~   71 (182)
                      -++.+.++.+++|+|++|||||||++.|+   |....  +.|.+..+           .    .....+     ......
T Consensus        20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~---G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   96 (500)
T TIGR02633        20 IDLEVRPGECVGLCGENGAGKSTLMKILS---GVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVA   96 (500)
T ss_pred             eEEEEeCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHH
Confidence            35677899999999999999999999999   44322  22322110           0    000000     001111


Q ss_pred             HHHHcCC-------CCCHHHHHHHHHHHHHhcCCCcE----EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKEGK-------IVPSEVTIKLLQKAMEESGNDKF----LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~----ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+....       ....+...+.+.+.+..-.....    -+..+...++|+..+++++..+|+++| ||+|+
T Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lll-LDEPt  169 (500)
T TIGR02633        97 ENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLI-LDEPS  169 (500)
T ss_pred             HHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEE-EeCCC
Confidence            1111110       01122222233333333211111    123456679999999999988998777 99998

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.36  E-value=2.4e-06  Score=66.55  Aligned_cols=31  Identities=19%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++++.++.+++|.|++|||||||++.|+.
T Consensus        21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14240         21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR   51 (250)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3456788999999999999999999999994

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=1.8e-06  Score=68.12  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=26.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++++.++.+++|+|++|||||||++.|+.
T Consensus        41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   69 (268)
T PRK14248         41 SMDIEKHAVTALIGPSGCGKSTFLRSINR   69 (268)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            55678999999999999999999999995

>PLN03130 ABC transporter C family member; Provisional

Probab=98.35  E-value=8.5e-07  Score=84.94  Aligned_cols=116  Identities=15%  Similarity=0.255  Sum_probs=68.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH-HHHH-HHHHHcCCh----hhHHHHHHHHcCCCCCHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-GDLL-RAEIKSGSE----NGTMIQNMIKEGKIVPSEVTIKL   88 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~-~di~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   88 (182)
                      ++.++++.+++|+|++|||||||++.|...+.   ... |.+. +.......+    ...++++-+..+...+++...+.
T Consensus       637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~v  713 (1622)
T PLN03130        637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERA  713 (1622)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHH
Confidence            45678999999999999999999999996663   222 2221 111110000    11222333333444444444444


Q ss_pred             HHHH-----HHh-cCCCcEEEe--C--CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           89 LQKA-----MEE-SGNDKFLID--G--FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        89 l~~~-----l~~-~~~~~~ild--g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ++..     +.. +++....+.  |  ...+++|+..++|++-.++++++ ||+|+
T Consensus       714 l~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlL-LDEpt  768 (1622)
T PLN03130        714 IDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYI-FDDPL  768 (1622)
T ss_pred             HHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEE-ECCCc
Confidence            3322     221 223222232  1  45669999999999988999888 99987

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.35  E-value=6.7e-07  Score=67.58  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +++..++.+.+|.||+|+||||+.+.|..++.
T Consensus        21 sl~~~pGev~ailGPNGAGKSTlLk~LsGel~   52 (259)
T COG4559          21 SLDLRPGEVLAILGPNGAGKSTLLKALSGELS   52 (259)
T ss_pred             ceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence            56788999999999999999999999996663

>PLN02796 D-glycerate 3-kinase

Probab=98.35  E-value=6.5e-06  Score=66.85  Aligned_cols=28  Identities=29%  Similarity=0.326  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .++.+|+|+|++||||||+++.|...+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence            4678899999999999999999998774

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=7.3e-06  Score=63.93  Aligned_cols=30  Identities=17%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   52 (251)
T PRK14270         23 INLPIYENKITALIGPSGCGKSTFLRCLNR   52 (251)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            356778999999999999999999999994

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.35  E-value=2.5e-06  Score=73.16  Aligned_cols=29  Identities=14%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++.+.++.+++|+|++|||||||++.|+.
T Consensus       283 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  311 (510)
T PRK15439        283 SLEVRAGEILGLAGVVGAGRTELAETLYG  311 (510)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            45678899999999999999999999993

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=9.2e-07  Score=69.34  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|+|++|||||||++.|+.
T Consensus        31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   60 (258)
T PRK14268         31 VSMQIPKNSVTALIGPSGCGKSTFIRCLNR   60 (258)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            356778999999999999999999999994

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.34  E-value=6.1e-07  Score=77.73  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d   54 (182)
                      +-++.+.++.+++|+|++|||||||++.|+   |....+.|.
T Consensus        25 ~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~---G~~~p~~G~   63 (556)
T PRK11819         25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMA---GVDKEFEGE   63 (556)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCce
Confidence            345678999999999999999999999999   543333443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.34  E-value=7.6e-07  Score=76.21  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=25.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ++.+.++.+++|+|++|||||||++.|+
T Consensus       272 sl~i~~Ge~~~liG~NGsGKSTLl~~l~  299 (501)
T PRK10762        272 SFTLRKGEILGVSGLMGAGRTELMKVLY  299 (501)
T ss_pred             eEEEcCCcEEEEecCCCCCHHHHHHHHh
Confidence            5567889999999999999999999999

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.34  E-value=2e-06  Score=75.27  Aligned_cols=160  Identities=18%  Similarity=0.234  Sum_probs=88.0

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-------HH------cCCh---hhHHHHH------H
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-------IK------SGSE---NGTMIQN------M   73 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-------~~------~~~~---~~~~~~~------~   73 (182)
                      ....++.+.+|+||+|||||||.+.|+.+..-..-..|+++-+.       ..      .+.+   -....++      .
T Consensus        51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~  130 (613)
T KOG0061|consen   51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSAL  130 (613)
T ss_pred             EEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHH
Confidence            34678899999999999999999999955431111111221111       11      0000   0111111      1


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHh---cCCCcEEEe-----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH--------
Q 030176           74 IKEGKIVPSEVTIKLLQKAMEE---SGNDKFLID-----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM--------  137 (182)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~l~~---~~~~~~ild-----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l--------  137 (182)
                      +.-....+.+...+.+++.+.+   ......++.     |....++.+..++..+-.+|.+++ +|+|+..|        
T Consensus       131 lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLf-lDEPTSGLDS~sA~~v  209 (613)
T KOG0061|consen  131 LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILF-LDEPTSGLDSFSALQV  209 (613)
T ss_pred             hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEE-ecCCCCCcchhhHHHH
Confidence            1112223334444444444433   112222332     456678889999988888997655 99999222        


Q ss_pred             ---HHHHHhhh--ccCCCCCcchHHHHHHHHHhhhhhccccccccc
Q 030176          138 ---ERRILNRN--QVRQKLPFSWGVFCLFIMLSFSSCISIPFSYFG  178 (182)
Q Consensus       138 ---~~R~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (182)
                         .+++.+.+  .--..|..+.+-|..+=+..+.+.+.  .-|+|
T Consensus       210 v~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~--~vy~G  253 (613)
T KOG0061|consen  210 VQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGE--VVYSG  253 (613)
T ss_pred             HHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCc--EEEec
Confidence               22333221  12234566788888888888888776  33444

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=98.34  E-value=1.7e-05  Score=59.18  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             HhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          119 VTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       119 ~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .....+|.+|||.++++++.+|+..|.
T Consensus       149 ~~~v~~dgiIYLrasPetc~~Ri~~R~  175 (244)
T KOG4235|consen  149 SMDVSLDGIIYLRASPETCYKRIYLRA  175 (244)
T ss_pred             ccccccceEEEeecChHHHHHHHHHHh
Confidence            344578999999999999999999983

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.33  E-value=3.5e-06  Score=60.34  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=63.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh---C-CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l---g-~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   90 (182)
                      .+.-+++.+|.|+|.+||||||+|-+|.+.+   | ..++-.+|=++...+.  +.+...++-.++-     +. +.-+.
T Consensus        25 ~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL~F~a~dR~ENI-----RR-igeVa   96 (207)
T KOG0635|consen   25 KLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DLGFKAEDRNENI-----RR-IGEVA   96 (207)
T ss_pred             HHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--ccCcchhhhhhhH-----HH-HHHHH
Confidence            3445889999999999999999998888776   3 3333333444443332  1222211111110     01 11112


Q ss_pred             HHHHhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176           91 KAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus        91 ~~l~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~  141 (182)
                      ++..  +...+-+..+-. -+..+...+......+.+-||+|+|.+.+.+|-
T Consensus        97 KLFA--Dag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RD  146 (207)
T KOG0635|consen   97 KLFA--DAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARD  146 (207)
T ss_pred             HHHh--ccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccC
Confidence            2221  112222333322 234444555555555778899999999998874

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=98.33  E-value=8.6e-07  Score=74.40  Aligned_cols=121  Identities=21%  Similarity=0.290  Sum_probs=66.0

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHHHHHHHH-cCChhhHHHHHH----------HHcC
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIK-SGSENGTMIQNM----------IKEG   77 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di~~~~~~-~~~~~~~~~~~~----------~~~~   77 (182)
                      +-++..++++.++++||+|+||||+.+.|.+-|.    ...+|..|+-.-... ....+|...|+-          +.-+
T Consensus       556 disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIrya  635 (790)
T KOG0056|consen  556 DISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYA  635 (790)
T ss_pred             cceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeec
Confidence            5567789999999999999999999999998774    334555444111000 011122222221          1111


Q ss_pred             C-CCCHHHHHHHHHH-----HHHh-c-CCCcEEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           78 K-IVPSEVTIKLLQK-----AMEE-S-GNDKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        78 ~-~~~~~~~~~~l~~-----~l~~-~-~~~~~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      + ...++.+.++.+.     .+.+ + +...-+=+ |  .....+|+..+++..-..|.+++ ||+.+
T Consensus       636 k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIl-LDEAT  702 (790)
T KOG0056|consen  636 KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIIL-LDEAT  702 (790)
T ss_pred             CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEE-Ecchh
Confidence            1 1224444444332     2222 1 11111111 1  23568999999999887886544 88865

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.33  E-value=7.2e-06  Score=64.33  Aligned_cols=32  Identities=19%  Similarity=0.338  Sum_probs=28.1

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++++.++.+++|+|++|||||||++.|+..
T Consensus        25 ~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   56 (259)
T PRK14260         25 GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI   56 (259)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34567789999999999999999999999954

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.33  E-value=1.5e-06  Score=67.86  Aligned_cols=31  Identities=16%  Similarity=0.306  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++.+.++.+++|+|++|||||||++.|+..
T Consensus        23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14249         23 INMDFPERQITAIIGPSGCGKSTLLRALNRM   53 (251)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3567789999999999999999999999954

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.33  E-value=6.9e-07  Score=77.41  Aligned_cols=116  Identities=17%  Similarity=0.215  Sum_probs=61.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---HH--cC----ChhhHHHHHHHHcCC---CC--
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---IK--SG----SENGTMIQNMIKEGK---IV--   80 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---~~--~~----~~~~~~~~~~~~~~~---~~--   80 (182)
                      ++++.++.+++|+|++|||||||++.|+   |....+.|.+....   ..  .+    ........+.+....   ..  
T Consensus       344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~---G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~  420 (556)
T PRK11819        344 SFSLPPGGIVGIIGPNGAGKSTLFKMIT---GQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGN  420 (556)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccc
Confidence            4567889999999999999999999999   54333333332100   00  00    000011111111110   01  


Q ss_pred             CHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           81 PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        81 ~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .......++............-+..+...++|+..+++++..+|+++| ||+|+
T Consensus       421 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt  473 (556)
T PRK11819        421 REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL-LDEPT  473 (556)
T ss_pred             cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence            111111222221111000011133456679999999999988998877 99997

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.32  E-value=2.9e-07  Score=71.80  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G   44 (248)
T PRK03695         15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG   44 (248)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            356778999999999999999999999993

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.32  E-value=2e-06  Score=74.14  Aligned_cols=116  Identities=15%  Similarity=0.232  Sum_probs=70.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH--------HHHcCChhhHHHHHHHHcC---CCCCH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA--------EIKSGSENGTMIQNMIKEG---KIVPS   82 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~   82 (182)
                      .++..+++.-+.|.|++|||||||.++|+.-..   .-.|.+...        -..+-...| .+++.+...   ..+++
T Consensus       412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d  487 (604)
T COG4178         412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPADSALLFLPQRPYLPQG-TLREALCYPNAAPDFSD  487 (604)
T ss_pred             ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCCCCceEEecCCCCCCCc-cHHHHHhCCCCCCCCCh
Confidence            355678899999999999999999999994432   222332211        111112233 333332221   12666


Q ss_pred             HHHHHHHHHHHHh------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           83 EVTIKLLQKAMEE------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        83 ~~~~~~l~~~l~~------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      +.+.+.|.+....      +....+ -+-...+++|+..+++.+-+.|++++ ||+.++
T Consensus       488 ~~l~~vL~~vgL~~L~~rl~~~~~W-~~vLS~GEqQRlafARilL~kP~~v~-LDEATs  544 (604)
T COG4178         488 AELVAVLHKVGLGDLAERLDEEDRW-DRVLSGGEQQRLAFARLLLHKPKWVF-LDEATS  544 (604)
T ss_pred             HHHHHHHHHcCcHHHHHHHhccCcH-hhhcChhHHHHHHHHHHHHcCCCEEE-Eecchh
Confidence            7666666654322      111112 22245679999999999988998777 998773

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.32  E-value=2.9e-07  Score=87.64  Aligned_cols=119  Identities=16%  Similarity=0.211  Sum_probs=68.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCCCC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGKIV   80 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~~~   80 (182)
                      ++.++++..|+|+|++|||||||++.|.+-+.   -..++.-++       ++..+..-++.    .-++++-+.-....
T Consensus      1239 s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~ 1318 (1490)
T TIGR01271      1239 SFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW 1318 (1490)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCC
Confidence            45678999999999999999999999985542   112221111       22222211111    11222222212234


Q ss_pred             CHHHHHHHHHHHH-----Hh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           81 PSEVTIKLLQKAM-----EE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        81 ~~~~~~~~l~~~l-----~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .++.+.++++..-     .+ +.+ +..|-++   +...++|+.++++++-.++.++| ||+++
T Consensus      1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILl-LDEaT 1381 (1490)
T TIGR01271      1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL-LDEPS 1381 (1490)
T ss_pred             CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEE-EeCCc
Confidence            5666666665432     11 112 2222222   45569999999999988888777 99987

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=4.2e-06  Score=66.09  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=27.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.+++|+|++|||||||++.|+..
T Consensus        32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3567789999999999999999999999943

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.32  E-value=7.5e-07  Score=76.70  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus       305 isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G  334 (529)
T PRK15134        305 ISFTLRPGETLGLVGESGSGKSTTGLALLR  334 (529)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356778999999999999999999999994

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=3.2e-06  Score=65.92  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=26.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus        24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239         24 VSLDFYPNEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            356778999999999999999999999984

>PLN03211 ABC transporter G-25; Provisional

Probab=98.31  E-value=1.1e-06  Score=77.56  Aligned_cols=119  Identities=16%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC------cEecHHHH---HHHHHHc--CC---hhhHHHHHHHHc----
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDL---LRAEIKS--GS---ENGTMIQNMIKE----   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~------~~~~~~di---~~~~~~~--~~---~~~~~~~~~~~~----   76 (182)
                      ++.+.++.+++|+||+|||||||.+.|+..+.-      ..++..++   .+.....  +.   .......+.+..    
T Consensus        88 s~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~  167 (659)
T PLN03211         88 TGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLL  167 (659)
T ss_pred             EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHh
Confidence            445788999999999999999999999944311      11111111   1111110  00   001112221111    


Q ss_pred             --CCCCCHHHHHHHHHHHHHh----cCCCcEE----EeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 --GKIVPSEVTIKLLQKAMEE----SGNDKFL----IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 --~~~~~~~~~~~~l~~~l~~----~~~~~~i----ldg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                        ......+...+.+.+.+..    ...+..+    ..+....++++..+++++..+|++++ +|+|+
T Consensus       168 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl-LDEPt  234 (659)
T PLN03211        168 RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI-LDEPT  234 (659)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE-EeCCC
Confidence              1112222222333333332    1111222    23466779999999999988998766 99998

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=8.6e-06  Score=64.20  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++.+.++.+++|.|++|||||||++.|+..+
T Consensus        38 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         38 VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35667899999999999999999999999543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.31  E-value=2.8e-06  Score=73.00  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++.+.++.+++|+|++|||||||++.|+.
T Consensus       303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G  332 (520)
T TIGR03269       303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAG  332 (520)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            356678999999999999999999999993

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=2.3e-06  Score=69.51  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++++.++.+++|+|++|||||||++.|+...
T Consensus       101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~  132 (329)
T PRK14257        101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN  132 (329)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            35667899999999999999999999999443

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=1.1e-05  Score=62.82  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=27.8

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +-++++.++.+++|+|++|||||||++.|+..
T Consensus        21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (250)
T PRK14266         21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM   52 (250)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            33567789999999999999999999999853

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.30  E-value=1.9e-06  Score=68.09  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=27.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++.+.++.+++|+|++|||||||++.|+..
T Consensus        45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl   74 (272)
T PRK14236         45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRM   74 (272)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            566789999999999999999999999944

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.29  E-value=3.6e-06  Score=69.02  Aligned_cols=110  Identities=23%  Similarity=0.347  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChh--------hHHHHHH-----HHcCCC-CCH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN--------GTMIQNM-----IKEGKI-VPS   82 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~--------~~~~~~~-----~~~~~~-~~~   82 (182)
                      .+.++.+++|+|.+||||||+++.|.   |....+.|+|+.+...-..+.        ...+.++     .-.... -..
T Consensus       345 ~ikrGelvFliG~NGsGKST~~~LLt---GL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~  421 (546)
T COG4615         345 TIKRGELVFLIGGNGSGKSTLAMLLT---GLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASP  421 (546)
T ss_pred             EEecCcEEEEECCCCCcHHHHHHHHh---cccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCCh
Confidence            46889999999999999999999999   888888888766554422211        1222221     111122 334


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEeC------CCCCHHHHHHHHHHhCCCCcEEEEEec
Q 030176           83 EVTIKLLQKAMEESGNDKFLIDG------FPRNEENRAAFEAVTKIEPEFVLFFDC  132 (182)
Q Consensus        83 ~~~~~~l~~~l~~~~~~~~ildg------~~~~~~q~~~l~~~~~~~~~~vI~ld~  132 (182)
                      +.+...++.+..+.  ...+-|+      ....++.+..+.-++.-+-|+++ +|+
T Consensus       422 q~i~~~LqrLel~~--ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv-~DE  474 (546)
T COG4615         422 QLIEKWLQRLELAH--KTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILV-LDE  474 (546)
T ss_pred             HHHHHHHHHHHHhh--hhcccCCcccccccccchHHHHHHHHHHHhhCCeEE-eeh
Confidence            55566665544431  2222333      22345555555555544555666 765

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.29  E-value=1.8e-06  Score=73.70  Aligned_cols=29  Identities=10%  Similarity=0.190  Sum_probs=26.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++.+.++.+++|+|++|||||||++.|+.
T Consensus       268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  296 (491)
T PRK10982        268 SFDLHKGEILGIAGLVGAKRTDIVETLFG  296 (491)
T ss_pred             eEEEeCCcEEEEecCCCCCHHHHHHHHcC
Confidence            45678899999999999999999999993

>PRK06761 hypothetical protein; Provisional

Probab=98.29  E-value=9.8e-06  Score=64.30  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      +++|+|+|+|||||||+++.|++.+..
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            468999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		7e-34
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		2e-30
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		7e-30
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		2e-26
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		3e-25
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		7e-25
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		2e-24
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		9e-20
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		2e-18
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		3e-18
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		3e-17
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		5e-17
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		7e-17
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		1e-16
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		1e-16
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		4e-16
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		5e-16
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		1e-15
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		2e-15
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		2e-15
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		2e-15
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		8e-15
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		2e-14
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		3e-14
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		4e-14
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		7e-14
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		2e-13
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		2e-13
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-13
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-13
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-13
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		3e-13
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-13
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-13
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		3e-13
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		2e-12
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		2e-12
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-12
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		6e-12
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		1e-11
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		1e-11
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		2e-10

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score =  139 bits (351), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 93/122 (76%), Gaps = 2/122 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+
Sbjct: 12  LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 71
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R
Sbjct: 72  KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 131
Query: 145 NQ 146
            +
Sbjct: 132 GE 133

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 88/128 (68%), Gaps = 8/128 (6%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
           LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+T
Sbjct: 9   LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68
Query: 86  IKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
           I LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct: 69  ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 139 RRILNRNQ 146
            R L R +
Sbjct: 129 ERCLERGK 136

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 88/125 (70%), Gaps = 5/125 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVT 85
           LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T
Sbjct: 21  LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 80
Query: 86  IKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           + LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M  R+L
Sbjct: 81  LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLL 139
Query: 143 NRNQV 147
            R + 
Sbjct: 140 ERGKT 144

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  +
Sbjct: 15  VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL 74
Query: 87  KLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILN 143
            +L+ AM  +   +  FLIDG+PR  +    FE   KI +P  +L+ D   E M +R+L 
Sbjct: 75  DMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFER--KIGQPTLLLYVDAGPETMTKRLLK 132
Query: 144 RNQV 147
           R + 
Sbjct: 133 RGET 136

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  IV+ +GYTHLS GDLLR+E+ SGS  G  +  ++++G++VP E  +
Sbjct: 15  VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVL 74
Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            +L+ AM    N    FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R
Sbjct: 75  DMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPETMTQRLLKR 133
Query: 145 NQV 147
            + 
Sbjct: 134 GET 136

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 85/128 (66%), Gaps = 5/128 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LGGPGSGKGTQC  +V+ F + HLS+GDLLRAE++SGS  G  ++ M++ G++VP EV +
Sbjct: 35  LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 87  KLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFDCSEEEMERRILN 143
            LL++AM +    N  FLIDG+PR  +    FE   ++ P   V+ FD SEE M +R+L 
Sbjct: 95  ALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEK--EVCPCLCVINFDVSEEVMRKRLLK 152
Query: 144 RNQVRQKL 151
           R +   ++
Sbjct: 153 RAETSNRV 160

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 7/129 (5%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  +VE +G+THLS G+LLR E+ S SE   +I+++++ G +VPS + +
Sbjct: 18  IGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVL 77
Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILN 143
           +LL++AM  S  D   FLIDG+PR  E +   E   +I +P+ V+  DCS + M  R+L 
Sbjct: 78  ELLKEAMVASLGDTRGFLIDGYPR--EVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQ 135
Query: 144 RNQVRQKLP 152
            +  R  LP
Sbjct: 136 MS--RSSLP 142

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++G++VP E+ + 
Sbjct: 12  GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 88  LLQKAME--ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           ++++ +   ++  + +L+DG+PR+     A E + +I P+  +  D  +E +  R++ R
Sbjct: 72  MVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPDELLVERVVGR 129

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA I+ G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRIL 142
            ++++ + +S  D  FL+DGFPR      A +   A    + E VL     +EE+  R+ 
Sbjct: 66  GIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLT 125
Query: 143 NR 144
            R
Sbjct: 126 GR 127

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   I+E +   H+S GD+ RA IK+G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEA-VTKI--EPEFVLFFDCSEEEMERRIL 142
            ++ + + +    K FL+DGFPR      A ++ +T +  + ++VL     +EE+ +R+ 
Sbjct: 66  GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125
Query: 143 NR 144
            R
Sbjct: 126 GR 127

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           +L+   +E      +L+DGFPR      A + + ++  + V+  +   E ++ R+  R
Sbjct: 93  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEV--DLVISLNIPFETLKDRLSRR 148

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 11  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 70
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           +L+   +E      +L+DGFPR      A + + ++  + V+  +   E ++ R+  R
Sbjct: 71  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEV--DLVISLNIPFETLKDRLSRR 126

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I +HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 12  MGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMT 71
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           +L+   ++      +L+DGFPR      A +   +I  + V+  +   E +++R+  R
Sbjct: 72  RLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQRLTAR 127

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG   +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I  HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 13  MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           +L    ++      +L+DGFPR      A +   +I  + V+  +   E +++R+  R
Sbjct: 73  RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQRLTAR 128

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGTQ  N+ +   Y HLS GDLLR   +  +E G  I+N+I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN-----EENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
            L+ + ++     K F++DG+PRN     + N+   +  TK++   V +F+  +E +  R
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDG--VFYFNVPDEVLVNR 152
Query: 141 ILNR 144
           I  R
Sbjct: 153 ISGR 156

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E+F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ +
Sbjct: 22  LGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVV 81
Query: 87  KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRIL 142
           +L++K +E     + FL+DGFPR        + + +   E    V+ F   +  + RRI 
Sbjct: 82  ELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 143 NR 144
            R
Sbjct: 142 GR 143

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IV  +G  H+S GD+ RA +K G+  G   +  +  G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTI 65
Query: 87  KLLQKAM-EESGNDKFLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRIL 142
            ++++ + ++   + FL+DGFPR      A E   A    + ++V+  D  ++ +  R+ 
Sbjct: 66  GIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLT 125
Query: 143 NRNQVR 148
            R   R
Sbjct: 126 GRRICR 131

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ +
Sbjct: 22  LGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL 81
Query: 87  KLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRIL 142
           +L++K +E     + FL+DGFPR        + + +   E    V+ F   +  + RRI 
Sbjct: 82  ELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 143 NR 144
            R
Sbjct: 142 GR 143

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN 109
            ++++ + +S  ++ FL+DGFPR 
Sbjct: 66  GIVRERLSKSDCERGFLLDGFPRT 89

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E FG   +S GD LRA +K+G+  G   +    EGK+VP  + I
Sbjct: 14  LGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLII 73
Query: 87  KLLQKAMEESG-NDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            L+++ ++E+   + +L DGFPR   +  A  EA   I  ++VL  D    E    I+ R
Sbjct: 74  GLVKERLKEADCANGYLFDGFPRTIAQADAXKEAGVAI--DYVLEIDVPFSE----IIER 127
Query: 145 NQVRQKLPFS 154
              R+  P S
Sbjct: 128 XSGRRTHPAS 137

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I
Sbjct: 6   LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
            L+++   + GN   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  
Sbjct: 66  ALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123
Query: 144 RN 145
           R 
Sbjct: 124 RR 125

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGTQC  I + +G  HLS GD+LR  IK+G++ G   +++I+ G  V  E+ +
Sbjct: 11  IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70
Query: 87  KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLFFDCSEEEMER 139
            L+++  +     + F++DGFPR        E + KI  E       V++F+  + E+  
Sbjct: 71  GLVKEKFDLGVCVNGFVLDGFPR---TIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIE 127
Query: 140 RILNR 144
           RI  R
Sbjct: 128 RISGR 132

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29  GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           GP GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI 
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88  LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           ++ + +E  G D +L+DGFPRN  + +  FEA+ +  ++  FV+      E  + RI+ R
Sbjct: 67  MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29  GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           GP GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI 
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88  LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           ++ + +E  G D +L+DGFPRN  + +  FEA+ +  ++  FV+      E  + RI+ R
Sbjct: 67  MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN 109
            ++++ + +   ++ FL+DGFPR 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRT 89

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN 109
            ++++ + +   ++ FL+DGFPR 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRT 89

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN 109
            ++++ + +   ++ FL+DGFPR 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRT 89

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN 109
            ++++ + +   ++ FL+DGFPR 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRT 89

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN 109
            ++++ + +   ++ FL+DGFPR 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRT 89

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN 109
            ++++ + +   ++ FL+DGFPR 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRT 89

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN 109
            ++++ + +   ++ FL+DGFPR 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRT 89

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS++T 
Sbjct: 26  LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 85
Query: 87  KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           +L+   +      + F++DG+PR+ E+ +A  E + +   + + VL F  SEE +  R+ 
Sbjct: 86  ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLK 145
Query: 143 NRNQ 146
            R +
Sbjct: 146 GRGR 149

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS++T 
Sbjct: 6   LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 65
Query: 87  KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           +L+   +      + F++DG+PR+ E+ +A  E + +   + + VL F  SEE +  R+ 
Sbjct: 66  ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLK 125
Query: 143 NRNQ 146
            R +
Sbjct: 126 GRGR 129

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGT    IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN 109
            ++++ + +   ++ FL+DGFPR 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRT 89

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ +
Sbjct: 10  LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69
Query: 87  KLLQKAMEESGNDKFLIDGFPRN 109
           +L+++ + E    + + DGFPR 
Sbjct: 70  ELIREELAE----RVIFDGFPRT 88

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEESG--NDKFLIDGFPR 108
            +++  +  +    + F++DGFPR
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPR 93

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEESG--NDKFLIDGFPR 108
            +++  +  +    + F++DGFPR
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPR 93

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEESG--NDKFLIDGFPR 108
            +++  +  +    + F++ GFPR
Sbjct: 70  NMIKDELTNNPACKNGFILVGFPR 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	4e-71
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	4e-68
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	5e-68
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	3e-67
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	2e-65
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	2e-37
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	3e-37
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	5e-36
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	2e-35
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	3e-35
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	2e-34
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	3e-34
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	4e-34
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	4e-34
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	1e-33
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	1e-33
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	1e-33
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	1e-33
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	2e-33
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	4e-33
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	3e-25
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	4e-20
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	3e-12
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	4e-11
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-10
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	1e-08
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-08
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	8e-08
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	4e-07
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	1e-06
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	3e-06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	5e-06
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	7e-06
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	2e-05
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	8e-05

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  212 bits (542), Expect = 4e-71
 Identities = 79/131 (60%), Positives = 98/131 (74%), Gaps = 2/131 (1%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+
Sbjct: 4   SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEE 136
           IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E      ++ +FVLFFDC EE 
Sbjct: 64  IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123

Query: 137 MERRILNRNQV 147
           M +R+L R + 
Sbjct: 124 MTQRLLKRGES 134

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  205 bits (523), Expect = 4e-68
 Identities = 55/131 (41%), Positives = 87/131 (66%), Gaps = 3/131 (2%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           ++K  ++F++GGPGSGKGTQC  +VE +G+THLS G+LLR E+ S SE   +I+++++ G
Sbjct: 9   LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERG 68

Query: 78  KIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
            +VPS + ++LL++AM  S  D   FLIDG+PR  +    F      +P+ V+  DCS +
Sbjct: 69  DLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIG-DPQLVICMDCSAD 127

Query: 136 EMERRILNRNQ 146
            M  R+L  ++
Sbjct: 128 TMTNRLLQMSR 138

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  204 bits (522), Expect = 5e-68
 Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 3/133 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KK  ++FV+GGPGSGKGTQC  IV+ +GYTHLS GDLLR+E+ SGS  G  +  ++++G+
Sbjct: 7   KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQ 66

Query: 79  IVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136
           +VP E  + +L+ AM    N    FLIDG+PR  +    FE     +P  +L+ D   E 
Sbjct: 67  LVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPET 125

Query: 137 MERRILNRNQVRQ 149
           M +R+L R +   
Sbjct: 126 MTQRLLKRGETSG 138

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  203 bits (518), Expect = 3e-67
 Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 5/144 (3%)

Query: 7   TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSE 65
           T    +    +  + +V+FVLGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+
Sbjct: 1   TAATTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQ 60

Query: 66  NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKI 122
            G +I+N IKEG+IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE     
Sbjct: 61  YGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIV- 119

Query: 123 EPEFVLFFDCSEEEMERRILNRNQ 146
           E +F+LFFDC E+ M  R+L R +
Sbjct: 120 ESKFILFFDCPEDIMLERLLERGK 143

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  198 bits (506), Expect = 2e-65
 Identities = 74/136 (54%), Positives = 94/136 (69%), Gaps = 8/136 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFD 131
           IVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQV 147
           C+ E    R L R + 
Sbjct: 122 CNNEICIERCLERGKS 137

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  128 bits (324), Expect = 2e-37
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           +L+   +E      +L+DGFPR      A + + ++  + V+  +   E ++ R+  R
Sbjct: 93  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEV--DLVISLNIPFETLKDRLSRR 148

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  127 bits (321), Expect = 3e-37
 Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I  HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 13  MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           +L    ++      +L+DGFPR      A +   +I  + V+  +   E +++R+  R
Sbjct: 73  RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQRLTAR 128

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  123 bits (312), Expect = 5e-36
 Identities = 45/130 (34%), Positives = 77/130 (59%), Gaps = 3/130 (2%)

Query: 17  TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
            +  P  V + G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++
Sbjct: 1   ALADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK 60

Query: 77  GKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134
           G++VP E+ + ++++ + +    +  +L+DG+PR+     A E + +I P+  +  D  +
Sbjct: 61  GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPD 119

Query: 135 EEMERRILNR 144
           E +  R++ R
Sbjct: 120 ELLVERVVGR 129

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  122 bits (309), Expect = 2e-35
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I
Sbjct: 14  LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLII 73

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            L+++ ++E+     +L DGFPR      A +    +  ++VL  D    E+  R+  R
Sbjct: 74  GLVKERLKEADCANGYLFDGFPRTIAQADAMKEA-GVAIDYVLEIDVPFSEIIERMSGR 131

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  121 bits (307), Expect = 3e-35
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            L+++ + +      FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA-GINVDYVLEFDVPDELIVDRIVGR 123

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  120 bits (302), Expect = 2e-34
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
            G  GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI
Sbjct: 6   FGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITI 65

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
            ++ + +E  G D +L+DGFPRN           +   ++  FV+      E  + RI+ 
Sbjct: 66  PMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMG 125

Query: 144 R 144
           R
Sbjct: 126 R 126

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  120 bits (302), Expect = 3e-34
 Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 4/122 (3%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGTQ  N+ +   Y HLS GDLLR   +  +E G  I+N+I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+ + ++     K F++DG+PRN +       + +    + + V +F+  +E +  RI 
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRIS 154

Query: 143 NR 144
            R
Sbjct: 155 GR 156

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  118 bits (299), Expect = 4e-34
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGTQC  I + +G  HLS GD+LR  IK+G++ G   +++I+ G  V  E+ +
Sbjct: 11  IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+++  +       F++DGFPR          +          V++F+  + E+  RI 
Sbjct: 71  GLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERIS 130

Query: 143 NR 144
            R
Sbjct: 131 GR 132

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  118 bits (298), Expect = 4e-34
 Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 5/121 (4%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I
Sbjct: 6   LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
            L+++   +  +   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  
Sbjct: 66  ALIEEVFPK--HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123

Query: 144 R 144
           R
Sbjct: 124 R 124

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  118 bits (297), Expect = 1e-33
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69

Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRI 141
            +++  +  +   K  F++DGFPR        + + K      E  +     +E +  RI
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129

Query: 142 LNR 144
             R
Sbjct: 130 TGR 132

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  117 bits (296), Expect = 1e-33
 Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR      A E + +      ++V+     ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLT 125

Query: 143 NR 144
            R
Sbjct: 126 GR 127

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  117 bits (296), Expect = 1e-33
 Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   I+E +   H+S GD+ RA IK+G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            ++ + + +    K FL+DGFPR      A +++      + ++VL     +EE+ +R+ 
Sbjct: 66  GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125

Query: 143 NR 144
            R
Sbjct: 126 GR 127

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  116 bits (293), Expect = 1e-33
 Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 7/126 (5%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ +
Sbjct: 10  LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILN 143
           +L+++ + E    + + DGFPR      A + +   T      V+  +  EEE+ RRIL 
Sbjct: 70  ELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125

Query: 144 RNQVRQ 149
           R ++  
Sbjct: 126 RAELEG 131

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  116 bits (294), Expect = 2e-33
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 5/148 (3%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MG+        +          V+  LG PG+GKGTQ   + E  G   +S G+L R  I
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMRVLL-LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV 119
           + G++ G   +  +  G +VPS++T +L+   +        F++DG+PR+ E   A   +
Sbjct: 60  EEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEM 119

Query: 120 ---TKIEPEFVLFFDCSEEEMERRILNR 144
                 + + VL F  SEE +  R+  R
Sbjct: 120 LERRGTDIDAVLEFRVSEEVLLERLKGR 147

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  116 bits (294), Expect = 4e-33
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 9   VKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGT 68
           V  A+      K     +LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G 
Sbjct: 4   VPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGK 63

Query: 69  MIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEP 124
            ++  +  GK+V  E+ ++L++K +E       FL+DGFPR        + + +    + 
Sbjct: 64  KLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKL 123

Query: 125 EFVLFFDCSEEEMERRILNR 144
           + V+ F   +  + RRI  R
Sbjct: 124 DSVIEFSIPDSLLIRRITGR 143

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 95.3 bits (237), Expect = 3e-25
 Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 4/124 (3%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVP 81
           V+ + G PGSGK    A +++  G   +   D++R      ++ G  + +  K   +I  
Sbjct: 3   VILITGMPGSGKSEF-AKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG 61

Query: 82  SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141
             V  +L  + +  S +D  + DG  R+      F+     +  +++      +   +R+
Sbjct: 62  DGVVARLCVEELGTSNHDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRM 119

Query: 142 LNRN 145
           + R 
Sbjct: 120 IERL 123

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 82.3 bits (203), Expect = 4e-20
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 9/125 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +  + G  G GK T C  +      +    GD++   +  G           +   +   
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESD---ELLALTWK 60

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF---VLFFDCSEEEMER 139
            +T          + ND  ++D     +E  A  + V     +     +    + EE+ R
Sbjct: 61  NITDLT--VNFLLAQND-VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117

Query: 140 RILNR 144
           R   R
Sbjct: 118 RDALR 122

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 60.8 bits (147), Expect = 3e-12
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 17/128 (13%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PG GK T    +    G  +++ GDL R E            +   +  I+  +
Sbjct: 14  ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY------DGYDEEYDCPILDED 67

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
             +  L   M E G    ++D    +      F  V      FVL        +  R+  
Sbjct: 68  RVVDELDNQMREGG---VIVDYHGCDFFPERWFHIV------FVL--RTDTNVLYERLET 116

Query: 144 RNQVRQKL 151
           R    +KL
Sbjct: 117 RGYNEKKL 124

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 9/131 (6%)

Query: 21  PTVVFVLGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
             ++  +G PGSGK T     + ++ G+ +++  D  R  I +  E         KEG +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV 60

Query: 80  VPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEE 135
             + +     +  +    + K  +I     N E R A+E        + E    FD    
Sbjct: 61  --TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWT 117

Query: 136 EMERRILNRNQ 146
           E+ +R   R  
Sbjct: 118 ELVKRNSKRGT 128

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 11/138 (7%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS--GSENGTMIQNMIKE 76
           + P ++ V G P +GK T    +        LS  D  +  +    G  +    + +   
Sbjct: 3   QTPALIIVTGHPATGKTTLSQALATGLRLPLLS-KDAFKEVMFDGLGWSDREWSRRVGAT 61

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSE 134
                  +        + +SG    +++   R + +    + +          +    S 
Sbjct: 62  AI----MMLYHTAATIL-QSGQS-LIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASG 115

Query: 135 EEMERRILNRNQVRQKLP 152
           + +  RIL+R     + P
Sbjct: 116 DVLVERILSRIAQGARHP 133

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 11/131 (8%)

Query: 23  VVFVLGGPGSGKGTQCANIVE-----HFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           VV V G PG G  T     ++        Y  +S G ++    K  +        M K  
Sbjct: 5   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD-RDQMRKMD 63

Query: 78  KIVPSEVTIKLLQKAMEESGNDKFLIDG-----FPRNEENRAAFEAVTKIEPEFVLFFDC 132
                 +     +K  E +      +D       P+          + ++ P+ ++  + 
Sbjct: 64  PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 123

Query: 133 SEEEMERRILN 143
           + +E+  R ++
Sbjct: 124 TGDEILMRRMS 134

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 9/131 (6%)

Query: 21  PTVVFVLGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
             ++  +G PGSGK T     + ++ G+ +++  D  R  I +  E         KEG +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV 60

Query: 80  VPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEE 135
             + +     +  +    + K  +I     N E R A+E   K    + E    FD    
Sbjct: 61  --TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWT 117

Query: 136 EMERRILNRNQ 146
           E+ +R   R  
Sbjct: 118 ELVKRNSKRGT 128

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 49.5 bits (117), Expect = 8e-08
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 8/133 (6%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSE-NGTMIQNMIK 75
           K+P  + + G  G+GK T      + F      +   D  R++     E      ++ ++
Sbjct: 30  KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG-DSFRSQHPHYLELQQEYGKDSVE 88

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFV--LFFDCS 133
             K    ++   L+ K      N   LI+G  R  +       + K +   V        
Sbjct: 89  YTKDFAGKMVESLVTKLSSLGYN--LLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK 146

Query: 134 EEEMERRILNRNQ 146
            E      L R +
Sbjct: 147 PELSYLSTLIRYE 159

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 18/140 (12%)

Query: 15  TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           ++   K   + + G PG+GK +    I     G+ HL  G L++       EN    +  
Sbjct: 4   SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK-------ENHFYTEYD 56

Query: 74  IKEGKIVPSEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD 131
            +    +  E     L   ME         ++D           F  V       VL   
Sbjct: 57  TELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMV------VVL--H 108

Query: 132 CSEEEMERRILNRNQVRQKL 151
            S E +  R+  R     K 
Sbjct: 109 TSTEVLFERLTKRQYSEAKR 128

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 10/135 (7%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
              ++ + G PGSGK T    +    G    H    D L   IK G  +  + Q+  +  
Sbjct: 8   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHGRIDPWLPQSHQQNR 66

Query: 78  KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
            I+        +     + G    ++DG  R +   A       +     +    +  E 
Sbjct: 67  MIMQ---IAADVAGRYAKEGYF-VILDGVVRPDWLPAFTALARPLH---YIVLRTTAAEA 119

Query: 138 ERRILNRNQVRQKLP 152
             R L+R       P
Sbjct: 120 IERCLDRGGDSLSDP 134

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 14/135 (10%)

Query: 23  VVFVLGGPGSGKGTQCANIVE-----HFGYTHLSAGDLLRAEIKSG---SENGTMIQNMI 74
           +  V G PG GK T  A + E           ++ GD + A         +   M +  +
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 75  KEGKIVPSEVTIKLLQKAMEESGNDKFLIDG-----FPRNEENRAAFEAVTKIEPEFVLF 129
           ++ K +  +    + ++A    G     ID       P           +T+I P  +  
Sbjct: 63  EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 130 FDCSEEEMERRILNR 144
            +   + +  R    
Sbjct: 122 LEADPKIILSRQKRD 136

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-GDLLRAEIKSGSE-NGTMIQNMIK 75
           V+ PT   + G PGSGK +  + I E      +    D  + +  +  E      ++++K
Sbjct: 30  VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVK 89

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE--PEFVLFFDCS 133
                 + +T  ++ +  ++  N   +I+G  R  +       + + +     +      
Sbjct: 90  HVTPYSNRMTEAIISRLSDQGYN--LVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP 147

Query: 134 EEEMERRILNRNQ 146
           +       + R +
Sbjct: 148 KINSYLGTIERYE 160

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 12/139 (8%)

Query: 7   TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN 66
           +   +++A    + P  + V+G  GSGK +    I E  GY  +    L   E       
Sbjct: 4   SIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE------- 56

Query: 67  GTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPE 125
                  + EG  +  +     L    E  +  +  ++         R            
Sbjct: 57  ---NIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLA 113

Query: 126 FVLFFDCSEEEMERRILNR 144
           FV F   SE  +  R+ +R
Sbjct: 114 FV-FLHGSESVLAERMHHR 131

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 9/133 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
              ++ + GG  +GK      +       +      D L   +    ++         +G
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG-VDSLIEAMPLKMQSAEGGIEFDADG 60

Query: 78  KIVPSEVTIKLLQ------KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD 131
            +        L         AM  +G    + D F      +  + +         +   
Sbjct: 61  GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120

Query: 132 CSEEEMERRILNR 144
           C     E R   R
Sbjct: 121 CDGAVAEGRETAR 133

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 40.4 bits (94), Expect = 8e-05
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 7/144 (4%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
            G  + T      + +T +    V V+G  GSGK T    + +  G     A      E 
Sbjct: 9   SGVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN 68

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
            +  + G  + +  +     P   ++     A  ++G    +     +    R       
Sbjct: 69  IATMQRGIPLTDEDRW----PWLRSLAEWMDARADAGVSTIITCSALK-RTYRDVLREG- 122

Query: 121 KIEPEFVLFFDCSEEEMERRILNR 144
                  L  D   E ++ R+  R
Sbjct: 123 -PPSVDFLHLDGPAEVIKGRMSKR 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.93
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.92
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.89
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.87
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.87
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.87
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.87
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.86
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.85
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.85
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.85
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.84
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.84
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.84
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.83
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.83
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.83
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.81
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.81
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.81
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.77
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.71
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.62
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.61
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.61
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.6
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.53
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.52
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.5
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.49
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.49
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.49
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.48
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.48
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.47
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.46
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.45
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.44
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.44
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.44
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.44
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.44
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.44
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.43
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.43
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.43
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.42
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.42
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.42
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.42
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.41
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.41
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.39
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.39
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.38
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.38
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.38
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.37
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.36
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.36
1via_A	175	Shikimate kinase; structural genomics, transferase	99.35
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.35
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.35
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.35
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.34
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.33
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.32
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.32
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.31
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.31
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.3
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.29
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.29
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.28
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.27
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.24
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.22
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.22
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.21
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.2
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.2
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.2
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.17
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.14
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.13
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.09
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.09
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.04
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.02
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.02
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.98
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.95
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.95
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.93
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.91
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.91
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.91
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.91
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.9
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.9
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.89
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.87
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.86
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.85
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.85
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.85
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.84
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.84
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.83
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.82
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.82
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.81
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.81
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.81
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.8
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.8
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.79
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.77
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.77
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.76
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.75
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.75
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.75
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.74
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.74
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.74
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.72
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.71
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.71
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.71
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.71
1g6h_A	257	High-affinity branched-chain amino acid transport	98.71
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.7
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.7
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.69
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.67
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.66
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.66
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.65
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.65
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.65
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.64
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.63
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.63
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.62
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.62
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.62
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.61
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.6
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.59
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.58
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.56
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.56
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.54
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.51
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.49
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.45
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.42
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.42
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.4
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.4
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.4
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.39
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.39
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.37
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.36
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.35
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.34
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.29
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.27
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.27
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.23
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.2
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.18
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.18
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.17
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.17
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.16
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.15
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.14
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.13
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.12
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.12
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.12
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.1
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.05
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.05
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.05
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.01
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.98
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.98
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.97
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.96
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.93
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.93
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.92
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.91
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.91
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.91
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.9
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.89
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.88
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.88
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.88
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.87
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.85
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.85
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.85
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.84
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.83
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.83
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.83
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.82
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	97.8
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.8
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.8
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.8
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.79
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.79
2og2_A	359	Putative signal recognition particle receptor; nuc	97.79
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.76
3pvs_A	447	Replication-associated recombination protein A; ma	97.75
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.74
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.74
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.74
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.73
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.73
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.73
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.72
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.72
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.71
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.69
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.69
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.68
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.68
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.68
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.67
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.66
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.64
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.64
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.64
3bos_A	242	Putative DNA replication factor; P-loop containing	97.64
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.64
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.63
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.62
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.62
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.62
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.61
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.61
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.6
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.6
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.59
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.59
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.57
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.57
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.57
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.56
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.56
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.55
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.54
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.54
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.53
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.53
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.52
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.52
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.51
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.51
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.51
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.51
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.5
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.49
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.48
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.48
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.47
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.46
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.46
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.44
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.44
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.44
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.44
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.42
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.41
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.41
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.41
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.41
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.41
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.41
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.41
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.4
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.4
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.39
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.39
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.38
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.37
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.37
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.36
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.35
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.35
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.34
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.33
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.33
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.33
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.32
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.32
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.29
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.28
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.26
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.25
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.25
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.24
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.24
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.24
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.23
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.23
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.23
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.22
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.22
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.21
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.2
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.2
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.2
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.18
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.18
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.18
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.17
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.17
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.17
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.16
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.16
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.16
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.16
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.16
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.15
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.15
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.14
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.14
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.14
2qgz_A	308	Helicase loader, putative primosome component; str	97.13
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.13
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.12
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.11
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.1
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.1
3co5_A	143	Putative two-component system transcriptional RES	97.1
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.09
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.08
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.07
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.07
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.07
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.07
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.06
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.05
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.05
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.05
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.04
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.02
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.02
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.02
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.01
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.0
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.0
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.98
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.98
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.98
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.98
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.98
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.97
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.95
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.95
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.95
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.94
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.94
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.94
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.92
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.92
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.92
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.92
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.92
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.92
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.91
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.91
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.9
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.9
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.9
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.9
3ice_A	422	Transcription termination factor RHO; transcriptio	96.9
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.88
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.88
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.87
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.86
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.86
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.86
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.85
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.85
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.85
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.85
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.85
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.84
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.84
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.84
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.83
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.83
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.83
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.82
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.82
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.8
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.79
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.78
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.78
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.77
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.76
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.76
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.75
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.75
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.75
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.75
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.74
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.73
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.72
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.72
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.72
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.72
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.7
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.7
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.7
2xxa_A	433	Signal recognition particle protein; protein trans	96.7
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.7
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.69
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.69
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.69
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.68
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.68
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.67
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.67
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.67
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.66
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.66
2fna_A	357	Conserved hypothetical protein; structural genomic	96.66
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.66
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.66
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.66
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.65
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.65
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.65
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.64
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.64
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.64
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.64
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.64
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.62
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.61
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.61
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.6
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.6
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.6
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.58
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.58
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.57
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.56
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.56
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.55
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.54
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.54
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.54
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.54
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	96.53
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.52
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.52
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.51
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.51
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.51
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.51
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.5
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.49
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.49
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.49
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.49
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.48
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.46
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.46
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.45
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.45
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.45
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.44
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.44
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.42
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.41
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.41
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.39
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.39
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.39
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.38
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.38

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.93  E-value=7.9e-25  Score=166.21  Aligned_cols=136  Identities=46%  Similarity=0.779  Sum_probs=118.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   94 (182)
                      .....++++|+|.|||||||+|+|+.|+++||+.+++++|+++.....++..+..++.++..|..+|++.+.+++.+.+.
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~  102 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMI  102 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence            33567889999999999999999999999999999999999999999999999999999999999999999999998886


Q ss_pred             h--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc--cCCCC
Q 030176           95 E--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--VRQKL  151 (182)
Q Consensus        95 ~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~--~r~~~  151 (182)
                      +  ....++|+||||+...|...+.... ..++.+|+|++|.+++.+|+..|..  +|.+|
T Consensus       103 ~~~~~~~g~ilDGfPRt~~Qa~~l~~~~-~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD  162 (217)
T 3umf_A          103 KLVDKNCHFLIDGYPRELDQGIKFEKEV-CPCLCVINFDVSEEVMRKRLLKRAETSNRVDD  162 (217)
T ss_dssp             HHTTTCSEEEEETBCSSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHSCC------CHH
T ss_pred             hccccccCcccccCCCcHHHHHHHHHhC-CccCEEEeccCCHHHHHHHHhcccccCCCCCC
Confidence            5  3456899999999999999987765 4688999999999999999998863  44443

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.92  E-value=5.4e-24  Score=160.61  Aligned_cols=122  Identities=29%  Similarity=0.660  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      ++|+|.|||||||+|+|+.|+++||+.++++||++++....++..|..++.++..|...|++++.+++.+.+.+  ..++
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~   78 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV   78 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence            47899999999999999999999999999999999999999999999999999999999999999999988855  4579


Q ss_pred             EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||||+...|...+...+   +..++.+|+|++|.+++.+|+..|.
T Consensus        79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~  125 (206)
T 3sr0_A           79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR  125 (206)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence            9999999999999886654   5678999999999999999999885

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.89  E-value=6.4e-22  Score=150.97  Aligned_cols=123  Identities=35%  Similarity=0.646  Sum_probs=112.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~  100 (182)
                      +..+|+|+|||||||+|+.|++.||+.+++.++++++....+...+..++.++..+...|++.+.+++.+.+.+. ...+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g   88 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANG   88 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTC
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCC
Confidence            568999999999999999999999999999999999999999999999999999999999999999999988763 3468


Q ss_pred             EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +|+||||+...|.+.+.. ....++.+|+|++|.+++.+|+..|.
T Consensus        89 ~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~  132 (230)
T 3gmt_A           89 YLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRR  132 (230)
T ss_dssp             EEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred             eEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCC
Confidence            999999999999988854 44568999999999999999999996

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.87  E-value=1.8e-20  Score=140.21  Aligned_cols=158  Identities=28%  Similarity=0.487  Sum_probs=112.6

Q ss_pred             CCccccCchhhhhhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCC
Q 030176            1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV   80 (182)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
                      ||.+--+|... .+......+.+|+|+|+|||||||+++.|++.+|+.+++.|++++.........+..+.+.+..+...
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~   79 (201)
T 2cdn_A            1 MGSSHHHHHHS-SGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLV   79 (201)
T ss_dssp             ----------------CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCcccccccc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcc
Confidence            55555555544 22334566789999999999999999999999999999999999988777777888888888888888


Q ss_pred             CHHHHHHHHHHHHHh-cCCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchH
Q 030176           81 PSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWG  156 (182)
Q Consensus        81 ~~~~~~~~l~~~l~~-~~~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~  156 (182)
                      +++.....+.+.+.. ..+.++|+|++|....+...+...+   +..|+++|+|++|.+++.+|+.+|  +|.++  +.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~--~~e  155 (201)
T 2cdn_A           80 PSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADD--TDD  155 (201)
T ss_dssp             CHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTC--SHH
T ss_pred             cHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCC--CHH
Confidence            887777777665543 2345789999998887776665543   345889999999999999999998  45432  345


Q ss_pred             HHHHHHH
Q 030176          157 VFCLFIM  163 (182)
Q Consensus       157 ~~~~~~~  163 (182)
                      .+...+.
T Consensus       156 ~~~~r~~  162 (201)
T 2cdn_A          156 VILNRMK  162 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.87  E-value=3.9e-20  Score=137.25  Aligned_cols=127  Identities=45%  Similarity=0.882  Sum_probs=106.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S   96 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~   96 (182)
                      .++.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+.+....++...+..  .
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~   86 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN   86 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence            46689999999999999999999999999999999999988777777888888887778777877777777666554  2


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      .+.++|+|++|....+...+...+ ..++++|||++|.+++.+|+.+|..
T Consensus        87 ~~~~vi~d~~~~~~~~~~~~~~~~-~~~~~vi~l~~~~e~~~~R~~~R~~  135 (196)
T 2c95_A           87 TSKGFLIDGYPREVQQGEEFERRI-GQPTLLLYVDAGPETMTQRLLKRGE  135 (196)
T ss_dssp             TCSCEEEESCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHT
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHccCC
Confidence            457899999999888777666555 4688999999999999999998863

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.87  E-value=3.9e-20  Score=136.68  Aligned_cols=144  Identities=56%  Similarity=0.903  Sum_probs=113.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~   99 (182)
                      .+.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+++....++...+....+.
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~   84 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGK   84 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            45789999999999999999999999999999999999887667777888888888888778887777877777655567


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCC--CCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHH
Q 030176          100 KFLIDGFPRNEENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIM  163 (182)
Q Consensus       100 ~~ildg~~~~~~q~~~l~~~~~~--~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~  163 (182)
                      .+|+|++|....++..+...+..  .++++|+|++|.+++.+|+.+|.........+.+.+...++
T Consensus        85 ~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~  150 (194)
T 1qf9_A           85 NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFN  150 (194)
T ss_dssp             CEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHH
T ss_pred             CEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Confidence            89999999998887777655432  57899999999999999999986421122223455554443

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.87  E-value=1.5e-20  Score=144.95  Aligned_cols=128  Identities=34%  Similarity=0.599  Sum_probs=113.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-c
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-S   96 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~   96 (182)
                      ..++.+|+|+|+|||||||+++.|++++|+.+++.+++++.....+...+..++.++..+...+++.+..++...+.. .
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~  105 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ  105 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence            357889999999999999999999999999999999999999888889999999999999999999988888877765 2


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           97 GNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ...++|+|+||....|...+...+   +..|+.+|+|++|.+++.+|+.+|.
T Consensus       106 ~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~  157 (243)
T 3tlx_A          106 CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL  157 (243)
T ss_dssp             GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence            357899999999998888776543   4568999999999999999999985

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.86  E-value=1.4e-20  Score=140.05  Aligned_cols=126  Identities=43%  Similarity=0.872  Sum_probs=105.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G   97 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~   97 (182)
                      ++.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+.+....++.+.+...  .
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence            46789999999999999999999999999999999998887666777888888887787788877777776665542  4


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      +..+|+|+++....++..+.+.+. .|+++|||++|.+++.+|+.+|..
T Consensus        91 ~~~vi~dg~~~~~~~~~~l~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~  138 (199)
T 2bwj_A           91 TRGFLIDGYPREVKQGEEFGRRIG-DPQLVICMDCSADTMTNRLLQMSR  138 (199)
T ss_dssp             CSCEEEETCCSSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHHHTCC
T ss_pred             CccEEEeCCCCCHHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHcCCC
Confidence            678999999999888777765542 588999999999999999998853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.85  E-value=7.1e-20  Score=138.27  Aligned_cols=122  Identities=33%  Similarity=0.627  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~  101 (182)
                      .|+|+|+|||||||+++.|++++|+.+++.|++++.....+...+..+.+++..+...+++....++...+.. ..+.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~   81 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGF   81 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCE
Confidence            5899999999999999999999999999999999999998889999999998888889998888888877765 335789


Q ss_pred             EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176          102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      |+|++|....+...+...+   +..+|.+|+|++|.+++.+|+.+|
T Consensus        82 ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           82 LLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence            9999999988887776543   456889999999999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.85  E-value=1.1e-19  Score=137.06  Aligned_cols=122  Identities=34%  Similarity=0.690  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~  101 (182)
                      +|+|+|+|||||||+++.|++++|+.+++.+++++.........+..+.+++..+...+++....++.+.+.. ..+.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~   81 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGF   81 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcE
Confidence            6899999999999999999999999999999999999998888999999999999999998888888887765 335689


Q ss_pred             EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176          102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      |+|++|....+...+...+   +..++.+|+|++|.+++.+|+.+|
T Consensus        82 ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           82 LLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            9999999988887776543   446889999999999999999988

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.85  E-value=8.7e-20  Score=138.25  Aligned_cols=125  Identities=32%  Similarity=0.622  Sum_probs=105.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGND   99 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~   99 (182)
                      +++|+|+|+|||||||+++.|++.+|+.+++.|++++.........+..+.+++..+...+++...+++...+.. ..+.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~   84 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVN   84 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence            468999999999999999999999999999999999998888778888888888888888888888888777654 2356


Q ss_pred             cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       100 ~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ++|+||||....+...+...   .+..||++|||++|.+++.+|+..|.
T Consensus        85 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  133 (217)
T 3be4_A           85 GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC  133 (217)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            89999999998777776542   34578999999999999999999875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.84  E-value=5.3e-19  Score=132.15  Aligned_cols=128  Identities=52%  Similarity=0.956  Sum_probs=102.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-cCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-   95 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-   95 (182)
                      ..++.+|+|+|++||||||+++.|++.+|+.+++.|++++.... .+...+..++.++..+...+++....++.+.+.. 
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   91 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   91 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence            45567999999999999999999999999999999999887654 4556677777777777777777666666655433 


Q ss_pred             --cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           96 --SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        96 --~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                        .+...+++||++....+...+...+. .++++|||++|.+++.+|+.+|..
T Consensus        92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~-~~~~~i~l~~~~e~~~~Rl~~R~~  143 (203)
T 1ukz_A           92 VKANKHKFLIDGFPRKMDQAISFERDIV-ESKFILFFDCPEDIMLERLLERGK  143 (203)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHhccc
Confidence              22357899999998887777665543 489999999999999999999863

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.84  E-value=1.8e-19  Score=132.81  Aligned_cols=123  Identities=32%  Similarity=0.653  Sum_probs=100.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (182)
                      .++.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+++.....+.+.+..   
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~---   78 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE---   78 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS---
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC---
Confidence            35678999999999999999999999999999999999988777777788888888888888887777766665432   


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                       ++|+|+++....+...+...+   +..++.+|||++|.+++.+|+.+|.
T Consensus        79 -~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~  127 (186)
T 3cm0_A           79 -RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA  127 (186)
T ss_dssp             -EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             -CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence             488999998877765544332   2247899999999999999999885

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.84  E-value=2.9e-19  Score=135.40  Aligned_cols=126  Identities=26%  Similarity=0.563  Sum_probs=107.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH-h-cC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-E-SG   97 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~   97 (182)
                      ++.+|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+++..+...+++....++.+.+. . ..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~   82 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC   82 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence            467899999999999999999999999999999999999888888889988888888888898888888887775 2 13


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +.++|+|+||....+...+...   .+..||++|+|++|.+++.+|+..|.
T Consensus        83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~  133 (220)
T 1aky_A           83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL  133 (220)
T ss_dssp             GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence            4678999999988777665443   34578999999999999999999875

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.83  E-value=8.8e-19  Score=129.56  Aligned_cols=127  Identities=57%  Similarity=0.994  Sum_probs=99.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh---
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---   95 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---   95 (182)
                      ++.+|+|+|+|||||||+++.|++.+|+.+++.|++++..... ....+..+++++..+...+++....++...+..   
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            4689999999999999999999999999999999999887653 345577777777777777776655555443322   


Q ss_pred             --cCCCcEEEeCCCCCHHHHHHHHHHhCC--CCcEEEEEecCHHHHHHHHHhhhc
Q 030176           96 --SGNDKFLIDGFPRNEENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        96 --~~~~~~ildg~~~~~~q~~~l~~~~~~--~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                        ..+..+|+|+++....++..+...+..  .++++|||++|.+++.+|+.+|..
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  136 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  136 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence              235788999999988776656554432  477899999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.83  E-value=9.6e-19  Score=133.83  Aligned_cols=127  Identities=35%  Similarity=0.613  Sum_probs=108.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-C
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-G   97 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~   97 (182)
                      ..+..|+|+|+|||||||+++.|++.+++.+++.++++++........+..+++++..+...+++...+++...+... .
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~   93 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   93 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence            455789999999999999999999999999999999999988777888888889888888889988888888776542 2


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +.++|+|+||....+...+...+   +..++++|+|++|.+++.+|+..|.
T Consensus        94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  144 (233)
T 1ak2_A           94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL  144 (233)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred             cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            45789999999987776654432   3468999999999999999999884

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.83  E-value=3.1e-19  Score=135.80  Aligned_cols=124  Identities=30%  Similarity=0.596  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      ++|+|+|+|||||||+++.|++.+|+.+++.|+++++........+..+++++..+...+++.+.+++...+....+.++
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v   80 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW   80 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence            36899999999999999999999999999999999988766777888888888888888888888888777655225689


Q ss_pred             EEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+||+|....+...+...   .+..|+++|+|++|.+++.+|+.+|.
T Consensus        81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence            999999988777777553   34568999999999999999999885

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.81  E-value=1e-18  Score=133.01  Aligned_cols=125  Identities=31%  Similarity=0.588  Sum_probs=102.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (182)
                      .++.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+++..+...+++....++.+.+....+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~   84 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQ   84 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccC
Confidence            34678999999999999999999999999999999999998877777888888888888888887777766666654234


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+|+|+++....+...+...  ..++++|+|++|.+.+.+|+.+|.
T Consensus        85 ~~~vid~~~~~~~~~~~l~~~--~~~~~vi~L~~~~~~~~~R~~~R~  129 (227)
T 1zd8_A           85 YSWLLDGFPRTLPQAEALDRA--YQIDTVINLNVPFEVIKQRLTARW  129 (227)
T ss_dssp             SCEEEESCCCSHHHHHHHHTT--SCCCEEEEEECCHHHHHHHHTCEE
T ss_pred             CCEEEeCCCCCHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHcCc
Confidence            678899999887776555443  357899999999999999999874

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.81  E-value=1.8e-18  Score=130.62  Aligned_cols=122  Identities=38%  Similarity=0.694  Sum_probs=102.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~  101 (182)
                      .|+|+|+|||||||+++.|++.+|+.+++.|+++++....+...+..+.+++..+...+++....++...+... ...++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~   81 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF   81 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCE
Confidence            58999999999999999999999999999999999987777777777777777788888888888888776542 23578


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+|++|....+...+.. .+..|+++|+|++|.+.+.+|+.+|.
T Consensus        82 i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           82 LLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             EEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             EEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCc
Confidence            89999998887766644 33468999999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.81  E-value=1.2e-18  Score=132.21  Aligned_cols=125  Identities=36%  Similarity=0.745  Sum_probs=102.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G   97 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~   97 (182)
                      ++.+|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+++..+...+++....++.+.+...  .
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   83 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence            45789999999999999999999999999999999999877777888888888888888888887777666555431  1


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..++|+||++....+...+.. .+..|+++|||++|.+.+.+|+..|.
T Consensus        84 ~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~  130 (222)
T 1zak_A           84 ENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRR  130 (222)
T ss_dssp             HTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEE
T ss_pred             CCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            346778999998877766643 23458999999999999999998774

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.77  E-value=2.1e-17  Score=119.83  Aligned_cols=133  Identities=16%  Similarity=0.231  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC----ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG----SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   97 (182)
                      ++|+|+|+|||||||+++.| +.+|+.+++.+++++......    .............   .+.......+...+....
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~   77 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSN   77 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcC
Confidence            58999999999999999999 999999999999988876532    1222222222221   112233444455553345


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI  162 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~  162 (182)
                      +..+|+||+ ....++..+..... .++++|||++|.+++.+|+.+|  ++..+..+.+++....
T Consensus        78 ~~~vi~dg~-~~~~~~~~l~~~~~-~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~r~  138 (179)
T 3lw7_A           78 HDLVVFDGV-RSLAEVEEFKRLLG-DSVYIVAVHSPPKIRYKRMIER--LRSDDSKEISELIRRD  138 (179)
T ss_dssp             CSCEEEECC-CCHHHHHHHHHHHC-SCEEEEEEECCHHHHHHHHHTC--C----CCCHHHHHHHH
T ss_pred             CCeEEEeCC-CCHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhc--cCCCCcchHHHHHHHH
Confidence            678999998 88888888877765 5789999999999999999998  4444455666665544

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.71  E-value=1e-15  Score=117.84  Aligned_cols=124  Identities=35%  Similarity=0.645  Sum_probs=97.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~   99 (182)
                      ++.+|+|+|+|||||||+++.|++.+|+..++.|++++.........+..++.....+...++..+.+.+...+....+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~  105 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ  105 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999999999999999998876655566666666667777778777777766655433345


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       100 ~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ++++++++....+...+...  ..++++|+|++|.+.+.+|+..|.
T Consensus       106 ~~il~g~~~~~~~~~~l~~~--~~~~~vi~L~~~~~~~l~r~~~r~  149 (246)
T 2bbw_A          106 HWLLDGFPRTLGQAEALDKI--CEVDLVISLNIPFETLKDRLSRRW  149 (246)
T ss_dssp             CEEEESCCCSHHHHHHHHTT--CCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             eEEEECCCCCHHHHHHHHhh--cCCCEEEEEECCHHHHHHHHHcCC
Confidence            67899998876554444322  347899999999999999998764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.62  E-value=9.1e-15  Score=107.85  Aligned_cols=122  Identities=12%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (182)
                      +++.+|+|+|+|||||||+++.|++.+|+.+++.|++...........+.........   ...+...+.+...+.  .+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~g   77 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--SG   77 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--TT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--CC
Confidence            4678999999999999999999999999999998776543322100000000000000   000111112222222  35


Q ss_pred             CcEEEeCCCCCHHHHHHH---HHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           99 DKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l---~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      ..+|+|+++........+   ... ...++++|||++|.+++.+|+.+|..
T Consensus        78 ~~vi~d~~~~~~~~~~~~~~l~~~-~~~~~~~v~l~~~~e~~~~R~~~R~~  127 (193)
T 2rhm_A           78 QSLIMESNFRVDLDTERMQNLHTI-APFTPIQIRCVASGDVLVERILSRIA  127 (193)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHHH-SCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence            678899876322222222   222 33577899999999999999998853

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=9.1e-15  Score=109.03  Aligned_cols=115  Identities=15%  Similarity=0.222  Sum_probs=71.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   94 (182)
                      ++.+.++.+|+|+|++||||||+++.|++.+|+.+++.++++......  .....+++.   +.....+....++.... 
T Consensus        19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~--~i~~~~~~~---~~~~~~~~e~~~l~~l~-   92 (199)
T 3vaa_A           19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHK--TVGELFTER---GEAGFRELERNMLHEVA-   92 (199)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--CHHHHHHHH---HHHHHHHHHHHHHHHHT-
T ss_pred             eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCC--cHHHHHHhc---ChHHHHHHHHHHHHHHh-
Confidence            455677889999999999999999999999999999999987765432  222222111   11111122222333322 


Q ss_pred             hcCCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176           95 ESGNDKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (182)
Q Consensus        95 ~~~~~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~  142 (182)
                        ....+|++   +.+.....+..+..     ++.+|||++|.+++.+|+.
T Consensus        93 --~~~~~vi~~ggg~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~  136 (199)
T 3vaa_A           93 --EFENVVISTGGGAPCFYDNMEFMNR-----TGKTVFLNVHPDVLFRRLR  136 (199)
T ss_dssp             --TCSSEEEECCTTGGGSTTHHHHHHH-----HSEEEEEECCHHHHHHHHH
T ss_pred             --hcCCcEEECCCcEEccHHHHHHHHc-----CCEEEEEECCHHHHHHHHh
Confidence              23455666   33333333333332     4689999999999999998

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.61  E-value=3.1e-14  Score=106.14  Aligned_cols=113  Identities=19%  Similarity=0.290  Sum_probs=78.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH---HHHHHHHHHhc
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES   96 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~   96 (182)
                      .+++|+|+|++||||||+++.|++.+|+.+++.+++.......          ....+..+.+...   ...+.+.+  .
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~----------~~~~g~~~~~~~~~~~~~~l~~~~--~   84 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIR----------KMSEGIPLTDDDRWPWLAAIGERL--A   84 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHH----------HHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHH----------HHhcCCCCCchhhHHHHHHHHHHH--h
Confidence            3568999999999999999999999999999988774321110          1112333333222   22233333  3


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+..+|+|+.......+..+.... ..++.+|+|++|.+++.+|+.+|.
T Consensus        85 ~~~~vivd~~~~~~~~~~~l~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~  132 (202)
T 3t61_A           85 SREPVVVSCSALKRSYRDKLRESA-PGGLAFVFLHGSESVLAERMHHRT  132 (202)
T ss_dssp             SSSCCEEECCCCSHHHHHHHHHTS-TTCCEEEEEECCHHHHHHHHHHHH
T ss_pred             cCCCEEEECCCCCHHHHHHHHHhc-CCCeEEEEEeCCHHHHHHHHHHhh
Confidence            356778898766677766665544 346789999999999999999985

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.60  E-value=1.4e-14  Score=105.67  Aligned_cols=117  Identities=20%  Similarity=0.274  Sum_probs=76.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH-HhCCcEecHHHHHHHHHHcC-Ch----hhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE-HFGYTHLSAGDLLRAEIKSG-SE----NGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~-~lg~~~~~~~di~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   94 (182)
                      +.+|+|+|+|||||||+++.|++ .+++.+++.+.+ +...... ..    .......       ...+...+.+...+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~-r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH-HHHhhCCCccchhhhchhhhh-------HHHHHHHHHHHHHHh
Confidence            57899999999999999999998 689999998554 4333221 10    1000000       011223344444442


Q ss_pred             h-cCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHhhh
Q 030176           95 E-SGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        95 ~-~~~~~~ildg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      . ..+..+|+|+++....++..+.....  ..+..+|||++|.+++.+|+.+|.
T Consensus        74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  127 (181)
T 1ly1_A           74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (181)
T ss_dssp             SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence            2 34678999998887776666654321  123478899999999999999885

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.53  E-value=7.5e-13  Score=101.00  Aligned_cols=146  Identities=18%  Similarity=0.273  Sum_probs=84.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHH-HHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL-LQKAME   94 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~   94 (182)
                      +.++.+|+|.|++||||||+++.|++.++  +.++...      .......+..+++++..+.........-+ ......
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~   96 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE   96 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999999986  3443321      12234456666666655543333221111 111110


Q ss_pred             -------h--cCCCcEEEe----------CCCCC--HHHHHHHHHH--hCCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176           95 -------E--SGNDKFLID----------GFPRN--EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQVRQKL  151 (182)
Q Consensus        95 -------~--~~~~~~ild----------g~~~~--~~q~~~l~~~--~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~  151 (182)
                             .  ..+..+|+|          ++++.  .....++...  ....||++|+|++|++++.+|+.+|.......
T Consensus        97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~  176 (229)
T 4eaq_A           97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRL  176 (229)
T ss_dssp             HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CC
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccch
Confidence                   0  135678899          76544  3333344332  23479999999999999999999984221111


Q ss_pred             CcchHHHHHHHHHhhhhh
Q 030176          152 PFSWGVFCLFIMLSFSSC  169 (182)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~  169 (182)
                      ......|..-++..+...
T Consensus       177 e~~~~~~~~rv~~~y~~l  194 (229)
T 4eaq_A          177 DQEDLKFHEKVIEGYQEI  194 (229)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            123455666565555443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.52  E-value=5.3e-13  Score=98.24  Aligned_cols=117  Identities=19%  Similarity=0.354  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH-------HHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQK   91 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~   91 (182)
                      ++|+|+|++||||||+++.|++.+   |+.+++.++      ......+..+.+.+..+...+....       .+.+..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999999998   888887642      1122234444444444432222111       111111


Q ss_pred             HHHh--cCCCcEEEe----------CCCC--CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhh
Q 030176           92 AMEE--SGNDKFLID----------GFPR--NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        92 ~l~~--~~~~~~ild----------g~~~--~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      .+..  ..+..+++|          |++.  ...+...+....  +..||++|||++|.+++.+|+.+|
T Consensus        75 ~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r  143 (195)
T 2pbr_A           75 KIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK  143 (195)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT
T ss_pred             HHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc
Confidence            1111  234567777          4333  233333333222  236899999999999999999865

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.50  E-value=4.2e-13  Score=96.96  Aligned_cols=99  Identities=17%  Similarity=0.263  Sum_probs=64.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      ++|+|+|++||||||+++.|++.+|+.+++.+.+.....    ....                ..+... .+  ..+..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~~~----------------~~~~~~-~l--~~~~~v   58 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GNEK----------------LFEHFN-KL--ADEDNV   58 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CHHH----------------HHHHHH-HH--TTCCSE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HHHH----------------HHHHHH-HH--HhCCCe
Confidence            479999999999999999999999999998876644322    0000                001111 11  123344


Q ss_pred             EEeCC--------------C-CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176          102 LIDGF--------------P-RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus       102 ildg~--------------~-~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      +.|.+              . ........+.... ..|+++|||++|.+++.+|+.+|
T Consensus        59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~i~l~~~~e~~~~R~~~r  115 (173)
T 3kb2_A           59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKI-KAKAKVVYLHADPSVIKKRLRVR  115 (173)
T ss_dssp             EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHH-TTTEEEEEEECCHHHHHHHHHHH
T ss_pred             EEeeeecchHHHHHHHHHhhHhhHHHHHHHhccC-CCCCEEEEEeCCHHHHHHHHHhc
Confidence            55532              1 1233333443333 35889999999999999999988

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.49  E-value=3.7e-13  Score=100.33  Aligned_cols=119  Identities=19%  Similarity=0.215  Sum_probs=70.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH---HHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---KLLQK   91 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~   91 (182)
                      .+...++.+|+|+|++||||||+++.|++.+|..+++.+++.......          ....+..+.+....   ..+..
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~   92 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIA----------TMQRGIPLTDEDRWPWLRSLAE   92 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHH----------HHHTTCCCCHHHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHH----------HHhcCCCCCCcccccHHHHHHH
Confidence            334467889999999999999999999999999999987763221100          01112222221111   11111


Q ss_pred             HHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           92 AMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        92 ~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+..  ..+..+|++........+..+....  .+..+|||++|.+++.+|+.+|.
T Consensus        93 ~~~~~~~~g~~viid~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~l~~Rl~~R~  146 (200)
T 4eun_A           93 WMDARADAGVSTIITCSALKRTYRDVLREGP--PSVDFLHLDGPAEVIKGRMSKRE  146 (200)
T ss_dssp             HHHHHHHTTCCEEEEECCCCHHHHHHHTTSS--SCCEEEEEECCHHHHHHHHTTCS
T ss_pred             HHHHHHhcCCCEEEEchhhhHHHHHHHHHhC--CceEEEEEeCCHHHHHHHHHhcc
Confidence            1111  1234566776444455554443322  24578999999999999998874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.49  E-value=7.5e-13  Score=104.30  Aligned_cols=122  Identities=20%  Similarity=0.255  Sum_probs=75.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGN   98 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~   98 (182)
                      +.+|+|+|+|||||||+++.|++++ |+.+++.|++ +........ +.. ..+...+.....+...+.+...+.. ..+
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~-r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH-HHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            4789999999999999999999985 8999999854 443322100 000 0000000000011222333333311 346


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+|+|+.+....++..+....  ...+..+|||++|.+++.+|+.+|.
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (301)
T 1ltq_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (301)
T ss_dssp             CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence            7899999888877666665432  1124479999999999999999985

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.49  E-value=3.8e-13  Score=98.79  Aligned_cols=117  Identities=16%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH---HHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---EVTIKLLQK   91 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~   91 (182)
                      ++.+|+|+|+|||||||+++.|++.++     +.+++.++++++........ ....+   .. ....   ......+.+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~   76 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQ---MR-KMDPETQKRIQKMAGR   76 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGG---GS-SCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHH---Hh-cCCHHHHHHHHHHHHH
Confidence            357899999999999999999999998     99999999887764321100 00000   00 1111   111112212


Q ss_pred             HHHh-cCCCcEEEeCCCCC--HHHH-----HHHHHHhCCCCcEEEEEecCHHHHHH-HHHh
Q 030176           92 AMEE-SGNDKFLIDGFPRN--EENR-----AAFEAVTKIEPEFVLFFDCSEEEMER-RILN  143 (182)
Q Consensus        92 ~l~~-~~~~~~ildg~~~~--~~q~-----~~l~~~~~~~~~~vI~ld~~~~~l~~-R~~~  143 (182)
                      .+.. .....+|+|+++..  ....     ..+....  .|+++|||++|.+++.+ |+.+
T Consensus        77 ~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~  135 (192)
T 1kht_A           77 KIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSD  135 (192)
T ss_dssp             HHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTS
T ss_pred             HHHhhccCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhh
Confidence            2211 12356889986431  1000     0111112  37899999999999996 8876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.48  E-value=5.3e-13  Score=98.08  Aligned_cols=114  Identities=17%  Similarity=0.232  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHH-cCChhhHHHHHHHHcCCCCCH--HHHHHH----H
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPS--EVTIKL----L   89 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~----l   89 (182)
                      ++|+|+|+|||||||+++.|++.++     +.+++.++++.+... .....+.  .+   .....+.  ......    +
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR--DE---MRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH--HH---HTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch--hh---hhcCCHHHHHHHHHHHHHHH
Confidence            4799999999999999999999998     788888888876653 2111110  00   0111111  111111    1


Q ss_pred             HHHHHhcCCCcEEEeCCCCCHHH--------HHHHHHHhCCCCcEEEEEecCHHHHHHH-HHh
Q 030176           90 QKAMEESGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERR-ILN  143 (182)
Q Consensus        90 ~~~l~~~~~~~~ildg~~~~~~q--------~~~l~~~~~~~~~~vI~ld~~~~~l~~R-~~~  143 (182)
                      ...+....+..+|+|+++....+        ...+.. .  .|+++|||++|.+++.+| +..
T Consensus        77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~vi~l~~~~~~~~~rr~~~  136 (194)
T 1nks_A           77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-I--NPSVIFLLEADPKIILSRQKRD  136 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHHC
T ss_pred             HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh-c--CCCEEEEEeCCHHHHHHHHHhh
Confidence            22221134567889986431111        122222 2  378999999999998866 666

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.48  E-value=1.9e-13  Score=100.62  Aligned_cols=115  Identities=20%  Similarity=0.338  Sum_probs=73.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHH-hCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCC---CHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQ   90 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~-lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~   90 (182)
                      ++.++++.+|+|+|+|||||||+++.|++. +|+.+++.|+++++.. .....+..+    . ....   +++...+.+.
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~-~~~~~~~~~----~-~~~~~r~~~~~~~~~l~   77 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH-FYTEYDTEL----D-THIIEEKDEDRLLDFME   77 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT-CSCC-----------CCCCCHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh-hhhhHHHHh----h-hcccCCCCHHHHHHHHH
Confidence            345567789999999999999999999999 7999999999988741 111111111    0 1112   2333344444


Q ss_pred             HHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+..  ..+++++.....     .+..   ..++.+|||++|.+++.+|+.+|.
T Consensus        78 ~~~~~--~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           78 PIMVS--RGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             HHHTS--SSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             HHHhc--cCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhCC
Confidence            44322  345677764321     1111   125789999999999999999884

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.47  E-value=2.9e-13  Score=99.29  Aligned_cols=111  Identities=20%  Similarity=0.257  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      ++|+|+|+|||||||+++.|++.+|+.+++.|++.+...+.  .....+.   ..+.....+.....+...+..  ...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~--~~~~~~~---~~g~~~~~~~~~~~~~~~~~~--~~~v   75 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR--SIADIFA---TDGEQEFRRIEEDVVRAALAD--HDGV   75 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSS--CHHHHHH---HHCHHHHHHHHHHHHHHHHHH--CCSE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCC--CHHHHHH---HhChHHHHHHHHHHHHHHHhc--CCeE
Confidence            56999999999999999999999999999999988766432  1111111   112111122222334443332  2234


Q ss_pred             EEeCC--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +..|.  ......+..+    .  .+.+|||++|.+++.+|+.+|.
T Consensus        76 i~~g~~~v~~~~~~~~l----~--~~~vV~L~~~~e~~~~Rl~~r~  115 (184)
T 2iyv_A           76 LSLGGGAVTSPGVRAAL----A--GHTVVYLEISAAEGVRRTGGNT  115 (184)
T ss_dssp             EECCTTGGGSHHHHHHH----T--TSCEEEEECCHHHHHHHTTCCC
T ss_pred             EecCCcEEcCHHHHHHH----c--CCeEEEEeCCHHHHHHHHhCCC
Confidence            34442  1222233222    1  4578999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.46  E-value=3.2e-12  Score=92.97  Aligned_cols=112  Identities=14%  Similarity=0.200  Sum_probs=68.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH-------HHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-------EVTIKLLQK   91 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~   91 (182)
                      .++.+|+|+|++||||||+++.|++.+|..+++.+++......         .. ...+..+.+       ......+..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~---------~~-~~~g~~~~~~~~~~~~~~~~~~~~~   75 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI---------EK-MASGEPLNDDDRKPWLQALNDAAFA   75 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHH---------HH-HHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHH---------HH-hhcCcCCCccccccHHHHHHHHHHH
Confidence            4578999999999999999999999999999998876422100         00 001111111       111122222


Q ss_pred             HHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEEecCHHHHHHHHHhhh
Q 030176           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        92 ~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~-~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+..  +..+|+|.-......+..+.. .  .++ .+|||++|.+++.+|+.+|.
T Consensus        76 ~~~~--~~~~vi~~~~~~~~~~~~l~~-~--~~~~~vv~l~~~~e~~~~R~~~R~  125 (175)
T 1knq_A           76 MQRT--NKVSLIVCSALKKHYRDLLRE-G--NPNLSFIYLKGDFDVIESRLKARK  125 (175)
T ss_dssp             HHHH--CSEEEEECCCCSHHHHHHHHT-T--CTTEEEEEEECCHHHHHHHHHTST
T ss_pred             HHhc--CCcEEEEeCchHHHHHHHHHh-c--CCCEEEEEEECCHHHHHHHHHhcc
Confidence            2222  346677742233344434432 2  234 79999999999999999884

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.45  E-value=8e-13  Score=95.74  Aligned_cols=109  Identities=18%  Similarity=0.260  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      ++|+|+|++||||||+++.|++.+|+.+++.|+++....+  ......+..   .+.....+....++.. +.  . ..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g--~~~~~~~~~---~~~~~~~~~~~~~~~~-l~--~-~~~   73 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG--MTVADVVAA---EGWPGFRRRESEALQA-VA--T-PNR   73 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC--SCHHHHHHH---HHHHHHHHHHHHHHHH-HC--C-SSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC--CCHHHHHHH---cCHHHHHHHHHHHHHH-hh--c-CCe
Confidence            4799999999999999999999999999999998776522  112111111   0100011111122222 21  2 234


Q ss_pred             EEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH--hh
Q 030176          102 LID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL--NR  144 (182)
Q Consensus       102 ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~--~R  144 (182)
                      |++ +  .+.....+..+..     ++++|||++|.+++.+|+.  +|
T Consensus        74 vi~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~~~r  116 (173)
T 1e6c_A           74 VVATGGGMVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQ  116 (173)
T ss_dssp             EEECCTTGGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHC
T ss_pred             EEECCCcEEeCHHHHHHHHc-----CCeEEEEECCHHHHHHHHhhccC
Confidence            454 4  2223334433332     4689999999999999998  76

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.44  E-value=1.8e-12  Score=93.48  Aligned_cols=110  Identities=15%  Similarity=0.244  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEESGNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~  100 (182)
                      ++|+|+|++||||||+++.|++.+|+.+++.|++.......  ..    .+.... +.....+....++. .+..  ...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~--~~----~~~~~~~~~~~~~~~~~~~l~-~l~~--~~~   71 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGL--SI----PQIFEKKGEAYFRKLEFEVLK-DLSE--KEN   71 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--CH----HHHHHHSCHHHHHHHHHHHHH-HHTT--SSS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCC--CH----HHHHHHhChHHHHHHHHHHHH-HHhc--cCC
Confidence            36999999999999999999999999999999998765421  11    111111 11000111122222 2221  234


Q ss_pred             EEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          101 FLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       101 ~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +|++ +  .+.....+..+.     .++++|||++|.+++.+|+.+|.
T Consensus        72 ~Vi~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~r~  114 (168)
T 2pt5_A           72 VVISTGGGLGANEEALNFMK-----SRGTTVFIDIPFEVFLERCKDSK  114 (168)
T ss_dssp             EEEECCHHHHTCHHHHHHHH-----TTSEEEEEECCHHHHHHHCBCTT
T ss_pred             eEEECCCCEeCCHHHHHHHH-----cCCEEEEEECCHHHHHHHHhCCC
Confidence            4554 3  222333333332     26799999999999999998764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.44  E-value=2.2e-13  Score=105.71  Aligned_cols=112  Identities=15%  Similarity=0.184  Sum_probs=71.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH---hCCcEe--cHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEH---FGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~---lg~~~~--~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   94 (182)
                      ++.+|+|+|+|||||||+++.|++.   +|+.++  +.|++.... ..-...+..          .........+...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l-~~~~~~~e~----------~~~~~~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF-PVWKEKYEE----------FIKKSTYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS-SSCCGGGHH----------HHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH-hhhhHHHHH----------HHHHHHHHHHHHHhh
Confidence            4679999999999999999999988   687776  665543211 110000000          001112233333332


Q ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           95 ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        95 ~~~~~~~ildg~~~~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                        . ..+|+|+.+.....+..+....  ...++++|||++|.+++.+|+.+|.
T Consensus        72 --~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~  121 (260)
T 3a4m_A           72 --N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG  121 (260)
T ss_dssp             --T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred             --C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence              2 6788998666655555554332  2346889999999999999999884

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.44  E-value=2.9e-12  Score=93.92  Aligned_cols=109  Identities=14%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  100 (182)
                      ++.|+|+|++||||||+++.|++.+|+.+++.|+++.+..+..  ....+...   +.....+...+.+......  ...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~--~~~~~~~~---g~~~~~~~~~~~~~~~~~~--~~~   77 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGAD--IAWIFEME---GEAGFRRREREMIEALCKL--DNI   77 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSC--HHHHHHHH---HHHHHHHHHHHHHHHHHHS--SSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCC--hhhHHHHh---CHHHHHHHHHHHHHHHHhc--CCc
Confidence            5689999999999999999999999999999999877654321  11111111   1111112233334443322  233


Q ss_pred             EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176          101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus       101 ~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~  141 (182)
                      ++..|  .......+..+...     .++|||++|.+++.+|+
T Consensus        78 vi~~gg~~~~~~~~~~~l~~~-----~~vi~L~~~~e~l~~Rl  115 (185)
T 3trf_A           78 ILATGGGVVLDEKNRQQISET-----GVVIYLTASIDTQLKRI  115 (185)
T ss_dssp             EEECCTTGGGSHHHHHHHHHH-----EEEEEEECCHHHHHHHH
T ss_pred             EEecCCceecCHHHHHHHHhC-----CcEEEEECCHHHHHHHH
Confidence            44443  33344444444332     37899999999999999

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.44  E-value=1.8e-12  Score=106.97  Aligned_cols=103  Identities=22%  Similarity=0.299  Sum_probs=76.0

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   96 (182)
                      ....+.+|+|+|+|||||||+++.|++.+++.+++.|++-                        ........+...+.. 
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------------~~~~~~~~~~~~l~~-  308 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------------------------SWQRCVSSCQAALRQ-  308 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------------------------SHHHHHHHHHHHHHT-
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------------------------HHHHHHHHHHHHHhc-
Confidence            4466789999999999999999999999999999987750                        011223333444433 


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           97 GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                       +..+|+|+......++..+...   .+. +..+|||++|.+++++|+.+|..
T Consensus       309 -g~~vIiD~~~~~~~~r~~~~~~~~~~~~-~~~~v~l~~~~e~l~~R~~~R~~  359 (416)
T 3zvl_A          309 -GKRVVIDNTNPDVPSRARYIQCAKDAGV-PCRCFNFCATIEQARHNNRFREM  359 (416)
T ss_dssp             -TCCEEEESCCCSHHHHHHHHHHHHHHTC-CEEEEEECCCHHHHHHHHHHHHH
T ss_pred             -CCcEEEeCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCCHHHHHHHHHhhcc
Confidence             5678899987776666655443   332 44688899999999999999964

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.44  E-value=2e-13  Score=99.85  Aligned_cols=111  Identities=19%  Similarity=0.241  Sum_probs=72.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   97 (182)
                      +.++.+|+|+|+|||||||+++.|++.+|+.+++.++++.+.... ...+..     ........+.+.+.+...+..  
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--   79 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY-DGYDEE-----YDCPILDEDRVVDELDNQMRE--   79 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCE-EEEETT-----TTEEEECHHHHHHHHHHHHHH--
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchh-hhhhhh-----hcCccCChHHHHHHHHHHHhc--
Confidence            456678999999999999999999999999999999987766111 000000     000112334445555555444  


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                       .+++++......     +..   ..++.+|||++|.+++.+|+.+|.
T Consensus        80 -g~~vv~~~~~~~-----~~~---~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           80 -GGVIVDYHGCDF-----FPE---RWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             -CCEEEECSCCTT-----SCG---GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             -CCEEEEechhhh-----cch---hcCCEEEEEECCHHHHHHHHHHcC
Confidence             245676543211     000   016799999999999999999884

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.43  E-value=3.9e-12  Score=92.60  Aligned_cols=121  Identities=13%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcC--ChhhHHHHHHHHcCC-CCCH---HH---HHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSG--SENGTMIQNMIKEGK-IVPS---EV---TIKL   88 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~--~~~di~~~~~~~~--~~~~~~~~~~~~~~~-~~~~---~~---~~~~   88 (182)
                      .+.+|+|+|+|||||||+++.|++.++..++  +.|++........  ...+..+.+   .+. ....   ..   ....
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   78 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA---DGGVSIGPEFRALEGAWAEG   78 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECT---TSCEEECHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccC---CCccccchhHHHHHHHHHHH
Confidence            4578999999999999999999999986554  4666544221110  000000000   000 0011   11   1112


Q ss_pred             HHHHHHhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           89 LQKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        89 l~~~l~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +...+.  .+..+|+++... ....+..+.+.+...+.++|||++|.+++.+|+.+|.
T Consensus        79 ~~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~  134 (178)
T 1qhx_A           79 VVAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence            232222  245678888542 3333334444443334468889999999999999874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.43  E-value=1.9e-12  Score=96.59  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=33.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~   59 (182)
                      .+|+|+|++||||||+++.|++ +|+.+++.|++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~   39 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREV   39 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHH
Confidence            5799999999999999999987 999999999987654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.43  E-value=5e-13  Score=96.69  Aligned_cols=106  Identities=13%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEESGNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~  100 (182)
                      .+|+|+|++||||||+++.|++.+|+.+++.|++.....+.  ..    .+.+.. +.....+...+.+.....  ....
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~--~~----~~~~~~~g~~~~~~~~~~~l~~~~~--~~~~   79 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGL--SV----REIFEELGEDNFRMFEKNLIDELKT--LKTP   79 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--CH----HHHHHHTCHHHHHHHHHHHHHHHHT--CSSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCC--CH----HHHHHHhCHHHHHHHHHHHHHHHHh--cCCC
Confidence            57999999999999999999999999999999988775432  11    122211 211111222233333332  1223


Q ss_pred             -EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176          101 -FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus       101 -~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                       ++..+  ++.. ..       + ..++.+|||++|.+++.+|+.+|
T Consensus        80 ~Vi~~g~g~~~~-~~-------l-~~~~~vi~l~~~~e~~~~Rl~~r  117 (168)
T 1zuh_A           80 HVISTGGGIVMH-EN-------L-KGLGTTFYLKMDFETLIKRLNQK  117 (168)
T ss_dssp             CEEECCGGGGGC-GG-------G-TTSEEEEEEECCHHHHHHHHCC-
T ss_pred             EEEECCCCEech-hH-------H-hcCCEEEEEECCHHHHHHHHhcc
Confidence             33322  2222 11       2 24689999999999999999877

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.42  E-value=8.9e-12  Score=93.71  Aligned_cols=127  Identities=17%  Similarity=0.167  Sum_probs=78.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChh-hHHHHHH----HHcCCCCCHHHH-----------
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN-GTMIQNM----IKEGKIVPSEVT-----------   85 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~-----------   85 (182)
                      --|+|||.+||||||+++.|++ +|+++++.|.+.++....+... ......+    +.....++...+           
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~   88 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR   88 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence            3589999999999999999977 9999999999988877654322 2222211    111112222211           


Q ss_pred             -------HHHHH----HHHHhcCCCcEEEeCCCCCH-HHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176           86 -------IKLLQ----KAMEESGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF  153 (182)
Q Consensus        86 -------~~~l~----~~l~~~~~~~~ildg~~~~~-~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~  153 (182)
                             ..++.    +.+.......+++|.--... .....+       .|.+|++++|.++.++|+.+|+      ..
T Consensus        89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~-------~D~vi~V~ap~e~r~~Rl~~Rd------g~  155 (210)
T 4i1u_A           89 RRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKAR-------CDRVLVVDCPVDTQIARVMQRN------GF  155 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHH-------CSEEEEEECCHHHHHHHHHHHH------CC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCcccc-------CCeEEEEECCHHHHHHHHHhcC------CC
Confidence                   11111    22222233456677521111 122122       6899999999999999999984      35


Q ss_pred             chHHHHHHH
Q 030176          154 SWGVFCLFI  162 (182)
Q Consensus       154 ~~~~~~~~~  162 (182)
                      +.+++...+
T Consensus       156 s~eea~~ri  164 (210)
T 4i1u_A          156 TREQVEAII  164 (210)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            666666665

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.42  E-value=1.6e-12  Score=98.26  Aligned_cols=40  Identities=30%  Similarity=0.577  Sum_probs=37.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      +.+|+|+|++||||||+++.|++.+|+.+++.|++++...
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~   44 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA   44 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence            4689999999999999999999999999999999998654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.42  E-value=3.7e-12  Score=93.05  Aligned_cols=114  Identities=10%  Similarity=0.128  Sum_probs=63.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe-cHHHHHHHHHHcCChhhHHHHHHHHcCCC----CC--HHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL-SAGDLLRAEIKSGSENGTMIQNMIKEGKI----VP--SEVTIKLLQK   91 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~-~~~di~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~l~~   91 (182)
                      +++++|+|+|+|||||||+++.|++.+++.++ +.+.+ ..          .+.+....+..    ..  .+...+.+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-g~----------~i~~~~~~g~~~~~~~~~~~~~~~~~i~~   71 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-GQ----------ALRKLTPGFSGDPQEHPMWIPLMLDALQY   71 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-HH----------HHHHTSTTCCSCGGGSTTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-HH----------HHHHhCccccchhhhhHHHHHHHHHHHHH
Confidence            45789999999999999999999999998887 43111 11          11111111110    01  1223444444


Q ss_pred             HHHhcCCCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           92 AMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        92 ~l~~~~~~~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+.. .+..+|+|+..........+...   .+..+ ..|||++|.+++.+|+.+|.
T Consensus        72 ~l~~-~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~  126 (183)
T 2vli_A           72 ASRE-AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDG  126 (183)
T ss_dssp             HHHH-CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC-
T ss_pred             HHHh-CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhcc
Confidence            4433 24567778655544333333222   22222 56889999999999999874

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.42  E-value=5.5e-12  Score=94.67  Aligned_cols=138  Identities=17%  Similarity=0.283  Sum_probs=78.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH------------
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI------------   86 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l--g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------   86 (182)
                      +.+|+|.|+.||||||+++.|++.|  |+.++...+      ......+..+.+++..+...+.....            
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~   75 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV   75 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999988  444332210      12344555566666555555432211            


Q ss_pred             HHHHHHHHhcCCCcEEEeCCCC------------CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhccCCCCC
Q 030176           87 KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQVRQKLP  152 (182)
Q Consensus        87 ~~l~~~l~~~~~~~~ildg~~~------------~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~  152 (182)
                      +.+...+  ..+..+|.|.|..            .......+....  ...||++||||+|++++.+|+.+|.  +..+.
T Consensus        76 ~~i~p~l--~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~--~~~dr  151 (205)
T 4hlc_A           76 LKVIPAL--KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNS--RDQNR  151 (205)
T ss_dssp             HTHHHHH--HTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---------
T ss_pred             HHHHHHH--HcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcC--Ccccc
Confidence            1111222  2366777886531            123333333322  3469999999999999999999884  32222


Q ss_pred             c--chHHHHHHHHHhhhh
Q 030176          153 F--SWGVFCLFIMLSFSS  168 (182)
Q Consensus       153 ~--~~~~~~~~~~~~~~~  168 (182)
                      .  ....|.+-++..|..
T Consensus       152 ~e~~~~~f~~~v~~~Y~~  169 (205)
T 4hlc_A          152 LDQEDLKFHEKVIEGYQE  169 (205)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHH
Confidence            2  233455555555443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.41  E-value=2.1e-12  Score=99.82  Aligned_cols=119  Identities=21%  Similarity=0.280  Sum_probs=76.4

Q ss_pred             hcCCCC---CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHH
Q 030176           15 TVTVKK---PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK   91 (182)
Q Consensus        15 ~~~~~~---~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   91 (182)
                      ++.+.+   +.+|+|+|++||||||+++.|++.+|+.+++.++++..... +......++.   .+.....+...+.+.+
T Consensus        39 ~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~i~~i~~~---~ge~~fr~~e~~~l~~  114 (250)
T 3nwj_A           39 AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTSVAEIFEH---FGESVFREKETEALKK  114 (250)
T ss_dssp             HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSCHHHHHHH---HCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-CccHHHHHHH---hCcHHHHHHHHHHHHH
Confidence            444555   88999999999999999999999999999999998876651 1222222221   1222222333334444


Q ss_pred             HHHhcCCCcEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           92 AMEESGNDKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        92 ~l~~~~~~~~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      ..... ...+|.+|  .+.....+..+.      .+++|||++|.+++.+|+.+|
T Consensus       115 l~~~~-~~~Via~GgG~v~~~~~~~~l~------~~~vV~L~a~~e~l~~Rl~~~  162 (250)
T 3nwj_A          115 LSLMY-HQVVVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAAV  162 (250)
T ss_dssp             HHHHC-SSEEEECCGGGGGSHHHHHHHT------TSEEEEEECCHHHHHHHHHC-
T ss_pred             HHhhc-CCcEEecCCCeecCHHHHHHHh------CCcEEEEECCHHHHHHHHhhc
Confidence            44331 23444443  444444444442      268999999999999999863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.41  E-value=6e-12  Score=98.76  Aligned_cols=120  Identities=19%  Similarity=0.191  Sum_probs=71.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-----CCCCCHH---------
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSE---------   83 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------   83 (182)
                      +..+.+|+|+|++||||||+++.|+ .+|+.+++.|++.++....+......+.+....     ...+...         
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~  150 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN  150 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence            3456799999999999999999998 699999999999776544332211111111000     0001110         


Q ss_pred             ---------HH----HHHHHHHHH---hcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           84 ---------VT----IKLLQKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        84 ---------~~----~~~l~~~l~---~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                               ..    ...+.+.+.   ......+|+|+.......       +...+|.+||+++|.+++++|+.+|.
T Consensus       151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~-------~~~~~d~vI~l~a~~ev~~~Rl~~R~  221 (281)
T 2f6r_A          151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG-------WQSMVHEVWTVVIPETEAVRRIVERD  221 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT-------GGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc-------hHHhCCEEEEEcCCHHHHHHHHHHcC
Confidence                     00    001111111   122457889985322111       11236899999999999999999884

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.39  E-value=9.5e-13  Score=98.06  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=34.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      .+|+|+|++||||||+++.|++ +|+.+++.|+++++..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~   39 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFY   39 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHh
Confidence            4799999999999999999999 9999999999877644

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.39  E-value=5.1e-12  Score=95.12  Aligned_cols=40  Identities=28%  Similarity=0.416  Sum_probs=35.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      ++.+|+|+|++||||||+++.|++ +|+.+++.|++.+...
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~   42 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVV   42 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHh
Confidence            467999999999999999999988 9999999998877654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.38  E-value=1.4e-11  Score=93.03  Aligned_cols=142  Identities=18%  Similarity=0.222  Sum_probs=82.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCC--CCCHHHH--------
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPSEVT--------   85 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------   85 (182)
                      +++.+|+|.|++||||||+++.|++.+.   +.++...+      ......|..+++++..+.  .+.....        
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R   77 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR   77 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999998874   44433211      124455666777766653  2332111        


Q ss_pred             HHHHHHHHHh--cCCCcEEEeCCCC------------CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhccCC
Q 030176           86 IKLLQKAMEE--SGNDKFLIDGFPR------------NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQVRQ  149 (182)
Q Consensus        86 ~~~l~~~l~~--~~~~~~ildg~~~------------~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~r~  149 (182)
                      .+.+.+.+..  ..+..+|.|.|..            .......+....  ...||++||||+|++++.+|+.+|.. ..
T Consensus        78 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~-~d  156 (213)
T 4edh_A           78 AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR-LD  156 (213)
T ss_dssp             HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS-CC
T ss_pred             HHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC-cC
Confidence            0111111111  2467788886521            123333333322  45799999999999999999998841 11


Q ss_pred             CCCcchHHHHHHHHHhhh
Q 030176          150 KLPFSWGVFCLFIMLSFS  167 (182)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~  167 (182)
                      .......+|.+-++..|.
T Consensus       157 r~E~~~~~~~~rv~~~y~  174 (213)
T 4edh_A          157 RFEQEDRRFFEAVRQTYL  174 (213)
T ss_dssp             TTTTSCHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHH
Confidence            111112355555555544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.38  E-value=2.4e-11  Score=90.38  Aligned_cols=38  Identities=32%  Similarity=0.439  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      +|+|+|++||||||+++.|++.+|+.+++.|++.+...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~   41 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAA   41 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhh
Confidence            89999999999999999999999999999999987654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.38  E-value=1.5e-13  Score=102.73  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=69.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHH-----------
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK-----------   87 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   87 (182)
                      .++.+|+|+|++||||||+++.|++.++...++. ++++.. ..+...+..+.+++..+...+......           
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN   85 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999887544333 111100 011222333333333333333322111           


Q ss_pred             HHHHHHHhcCCCcEEEeCCCCCH---HH------HHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhh
Q 030176           88 LLQKAMEESGNDKFLIDGFPRNE---EN------RAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        88 ~l~~~l~~~~~~~~ildg~~~~~---~q------~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      .+...+.  .+..+|+|+++...   ..      ...+....  ...|+++|||++|.+++.+|+.+|
T Consensus        86 ~i~~~l~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r  151 (212)
T 2wwf_A           86 EIKSLLL--KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG  151 (212)
T ss_dssp             HHHHHHH--HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred             HHHHHHh--CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence            1222222  24678899876431   11      11221111  135899999999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.37  E-value=1.6e-12  Score=99.00  Aligned_cols=144  Identities=15%  Similarity=0.227  Sum_probs=80.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh-------CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH----
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI----   86 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l-------g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   86 (182)
                      +.++.+|+|.|++||||||+++.|++.+       |+.++..    ++  ......|..+++++..+...+.....    
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a   95 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFA   95 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4578999999999999999999999888       4433321    11  12345566677776666332222111    


Q ss_pred             ---HHHHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhcc
Q 030176           87 ---KLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQV  147 (182)
Q Consensus        87 ---~~l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~  147 (182)
                         +.+.+.+..  ..+..+|.|.|..+            ......+....  ...||++||||+|++++.+|+.+|.. 
T Consensus        96 ~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-  174 (227)
T 3v9p_A           96 GRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM-  174 (227)
T ss_dssp             HHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC-
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC-
Confidence               111111111  24677888975321            23333333322  45799999999999999999998841 


Q ss_pred             CCCCCcchHHHHHHHHHhhhh
Q 030176          148 RQKLPFSWGVFCLFIMLSFSS  168 (182)
Q Consensus       148 r~~~~~~~~~~~~~~~~~~~~  168 (182)
                      .........+|.+-++..|..
T Consensus       175 ~dr~E~~~~ef~~rv~~~Y~~  195 (227)
T 3v9p_A          175 PDKFESESDAFFARTRAEYLR  195 (227)
T ss_dssp             C---CCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhHHHHHHHHHHHHH
Confidence            111111134565556555543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.36  E-value=4.5e-13  Score=103.37  Aligned_cols=113  Identities=25%  Similarity=0.363  Sum_probs=71.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCc----------EecHHHHHHHHHHcCChhhHHHHHHHHcCC-------CCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKEGK-------IVP   81 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~----------~~~~~di~~~~~~~~~~~~~~~~~~~~~~~-------~~~   81 (182)
                      .++.+|+|+|++||||||+++.|++.+|+.          +++.|++++...     .+. .. ....+.       .+.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~-----~~~-~~-~~~~g~~~f~~~~~~d   92 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT-----SEQ-KA-KALKGQFNFDHPDAFD   92 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC-----HHH-HH-HHHTTCSCTTSGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC-----hhh-hh-hhccCCCCCCCcchhh
Confidence            456799999999999999999999999987          788888865210     000 00 011111       122


Q ss_pred             HHHHHHHHHHHHHh----------------------cCCCcEEEeCCCCC-HHHHHHHHHHhCCCCcEEEEEecCHHHHH
Q 030176           82 SEVTIKLLQKAMEE----------------------SGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEME  138 (182)
Q Consensus        82 ~~~~~~~l~~~l~~----------------------~~~~~~ildg~~~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~  138 (182)
                      .+...+.|......                      .....+|+||.... ...   +...    +|++|||++|.++++
T Consensus        93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~---~~~~----~d~vi~l~~~~e~~~  165 (252)
T 1uj2_A           93 NELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQE---VRDL----FQMKLFVDTDADTRL  165 (252)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHH---HHHH----CSEEEEEECCHHHHH
T ss_pred             HHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHH---HHHh----cCeeEEEeCCHHHHH
Confidence            22334444444311                      13457889996442 222   2121    478999999999999


Q ss_pred             HHHHhhh
Q 030176          139 RRILNRN  145 (182)
Q Consensus       139 ~R~~~R~  145 (182)
                      +|+.+|.
T Consensus       166 ~R~~~R~  172 (252)
T 1uj2_A          166 SRRVLRD  172 (252)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999885

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.36  E-value=8.6e-12  Score=92.45  Aligned_cols=41  Identities=32%  Similarity=0.431  Sum_probs=36.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      .++.+|+|+|++||||||+++.|++. |+.+++.|++++...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~   46 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR   46 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence            45679999999999999999999988 999999999887655

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.35  E-value=8.9e-13  Score=96.06  Aligned_cols=108  Identities=16%  Similarity=0.223  Sum_probs=65.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  102 (182)
                      +|+|+|+|||||||+++.|++.+|+.+++.|+++......  .....+.   ..+.....+....++..+ ..  ...++
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~---~~g~~~~~~~~~~~~~~l-~~--~~~~v   77 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQ--KVSEIFE---QKRENFFREQEQKMADFF-SS--CEKAC   77 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTS--CHHHHHH---HHCHHHHHHHHHHHHHHH-TT--CCSEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCC--CHHHHHH---HcCHHHHHHHHHHHHHHH-Hc--cCCEE
Confidence            6999999999999999999999999999999987765322  1111111   111111112222233332 21  23444


Q ss_pred             Ee-CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          103 ID-GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       103 ld-g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ++ |...... . .+.     ..+.+|||++|.+.+.+|+.+|.
T Consensus        78 i~~g~~~~~~-~-~l~-----~~~~~i~l~~~~e~~~~R~~~r~  114 (175)
T 1via_A           78 IATGGGFVNV-S-NLE-----KAGFCIYLKADFEYLKKRLDKDE  114 (175)
T ss_dssp             EECCTTGGGS-T-TGG-----GGCEEEEEECCHHHHTTCCCGGG
T ss_pred             EECCCCEehh-h-HHh-----cCCEEEEEeCCHHHHHHHHhccc
Confidence            55 4322111 1 121     23689999999999999998874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.35  E-value=6.4e-12  Score=93.28  Aligned_cols=114  Identities=20%  Similarity=0.330  Sum_probs=66.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH-----------
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI-----------   86 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   86 (182)
                      .++.+|+|+|++||||||+++.|++.+ |+.+++.+...     .....+..+.+++..+..+......           
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~   76 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFA   76 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999998 57665532110     0122344444444433333322110           


Q ss_pred             HHHHHHHHhcCCCcEEEeCCCCCHH--H------HHHHHHHh--CCCCcEEEEEecCHHHHHH
Q 030176           87 KLLQKAMEESGNDKFLIDGFPRNEE--N------RAAFEAVT--KIEPEFVLFFDCSEEEMER  139 (182)
Q Consensus        87 ~~l~~~l~~~~~~~~ildg~~~~~~--q------~~~l~~~~--~~~~~~vI~ld~~~~~l~~  139 (182)
                      +.+...+.  .+..+|+|+++....  +      ...+....  ...||++|||++|++++.+
T Consensus        77 ~~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~  137 (204)
T 2v54_A           77 SFIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR  137 (204)
T ss_dssp             HHHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred             HHHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence            11122222  346788898764311  0      11122111  2358999999999998887

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.35  E-value=2.6e-11  Score=95.43  Aligned_cols=122  Identities=14%  Similarity=0.181  Sum_probs=72.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCChhhHHHHHHHHcC----CCCCHHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVPSEVTIKLLQK   91 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l--g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~   91 (182)
                      ..+|.+|+|+|+|||||||+++.|++.+  ++.+++.|++. .....   .......+....    ...........+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R-~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~  105 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK-QQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISR  105 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH-TTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH-Hhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHH
Confidence            4567899999999999999999999998  77888875542 11100   000000000000    00111222334444


Q ss_pred             HHHhcCCCcEEEeCCCCCHHHHHHHHHHhC-CC-CcEEEEEecCHHHH----HHHHHhhh
Q 030176           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTK-IE-PEFVLFFDCSEEEM----ERRILNRN  145 (182)
Q Consensus        92 ~l~~~~~~~~ildg~~~~~~q~~~l~~~~~-~~-~~~vI~ld~~~~~l----~~R~~~R~  145 (182)
                      .+..  +..+|+|+......++..+...+. .. +..++++++|++.+    .+|+.+|.
T Consensus       106 ~l~~--g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~  163 (287)
T 1gvn_B          106 LSDQ--GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMY  163 (287)
T ss_dssp             HHHH--TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred             HHhc--CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence            4433  467889997777655544444331 11 22467899999999    78887664

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.35  E-value=2.3e-12  Score=93.35  Aligned_cols=113  Identities=15%  Similarity=0.268  Sum_probs=65.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~   99 (182)
                      .+.+|+|+|++||||||+++.|++.++..+++.++++.....  ...+..++..   +.....+....++.... .  ..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~~---g~~~~~~~~~~~l~~l~-~--~~   74 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDLE---GEEGFRDREEKVINELT-E--KQ   74 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHHH---HHHHHHHHHHHHHHHHH-T--SS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHHH---hHHHHHHHHHHHHHHHH-h--CC
Confidence            356899999999999999999999999999999888765432  2222222210   00000111112233322 1  22


Q ss_pred             cEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       100 ~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+++.   +.+.....+..+..     .++++++++|.+.+.+|+.+|.
T Consensus        75 ~~v~~~~~~~~~~~~~~~~l~~-----~~~~i~l~~~~~~l~~R~~~r~  118 (173)
T 1kag_A           75 GIVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDK  118 (173)
T ss_dssp             SEEEECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC----
T ss_pred             CeEEECCCeEEecHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCC
Confidence            34443   23233333333322     2578999999999999999874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.34  E-value=2.3e-12  Score=96.35  Aligned_cols=123  Identities=16%  Similarity=0.238  Sum_probs=62.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH-----------
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI-----------   86 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   86 (182)
                      +.++.+|+|+|++||||||+++.|++.++...++... ++.. ......+..+.+++..+..++.....           
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~   83 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQV   83 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999987533222100 0000 00112233333333333333332111           


Q ss_pred             HHHHHHHHhcCCCcEEEeCCCCC-HH--------HHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhh
Q 030176           87 KLLQKAMEESGNDKFLIDGFPRN-EE--------NRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        87 ~~l~~~l~~~~~~~~ildg~~~~-~~--------q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      +.+...+.  .+..+|+|.+... ..        ....+....  ...|+++|||++|.+++.+|+.+|
T Consensus        84 ~~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~  150 (215)
T 1nn5_A           84 PLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG  150 (215)
T ss_dssp             HHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred             HHHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence            11222222  3467788853210 00        011222111  135899999999999999999643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.33  E-value=2e-11  Score=94.23  Aligned_cols=41  Identities=32%  Similarity=0.571  Sum_probs=37.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~   59 (182)
                      .++.+|+|+|++||||||+++.|+++||+.+++.|.+++..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~   65 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL   65 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence            45689999999999999999999999999999999998654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.32  E-value=6.2e-11  Score=89.41  Aligned_cols=141  Identities=14%  Similarity=0.228  Sum_probs=81.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---CC-cEecHHHHHHHHHHcCChhhHHHHHHHHcC-----CCCCHHH-H----
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEV-T----   85 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l---g~-~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~----   85 (182)
                      ++.+|+|.|++||||||+++.|++.+   |+ ..+..    +  ...+...+..+++++...     ..+.... .    
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~   75 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----R--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY   75 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----E--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----e--CCCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence            57899999999999999999999887   44 22211    0  012345666666666522     2233211 0    


Q ss_pred             ---HHHHHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           86 ---IKLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        86 ---~~~l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                         .+.+.+.+..  ..+..+|.|.|..+            ......+....  ...||++||||+|++++.+|+.+|. 
T Consensus        76 A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~-  154 (213)
T 4tmk_A           76 AARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG-  154 (213)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC-
Confidence               1111111111  24678888975221            22232333322  4579999999999999999999984 


Q ss_pred             cCCCC-CcchHHHHHHHHHhhhh
Q 030176          147 VRQKL-PFSWGVFCLFIMLSFSS  168 (182)
Q Consensus       147 ~r~~~-~~~~~~~~~~~~~~~~~  168 (182)
                       +.+. ......|..-++..|..
T Consensus       155 -~~dr~E~~~~~f~~rv~~~y~~  176 (213)
T 4tmk_A          155 -ELDRIEQESFDFFNRTRARYLE  176 (213)
T ss_dssp             -SCCTTTTSCHHHHHHHHHHHHH
T ss_pred             -CccchhhhHHHHHHHHHHHHHH
Confidence             2111 11134566666655543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.32  E-value=1.7e-11  Score=94.65  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=71.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHc----CChhhHHHHHHHHcCCCCCHHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS----GSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg--~~~~~~~di~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~   90 (182)
                      ...+|.+|+|+|+|||||||+++.|++.++  +.+++.+.+ +.....    ....+....++...   ...+....++.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~  103 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVT  103 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHH
Confidence            446678999999999999999999999987  455666544 221100    00011111111100   00122223333


Q ss_pred             HHHHhcCCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+.  .+..+|+|+.+....+...+.+.+   +. +-.++++++|.+++.+|..+|.
T Consensus       104 ~~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~-~v~lv~l~~~~e~~~~R~~~R~  158 (253)
T 2p5t_B          104 KLSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGY-EVQLALIATKPELSYLSTLIRY  158 (253)
T ss_dssp             HHHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTC-EEEEEEECCCHHHHHHHHHHHH
T ss_pred             HHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCC-cEEEEEEeCCHHHHHHHHHHHH
Confidence            3332  245788999877655544444433   22 2235678999999999999886

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.31  E-value=6.7e-12  Score=93.53  Aligned_cols=110  Identities=16%  Similarity=0.222  Sum_probs=65.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCc--Eec----HHHHHHHHHHcCChhhHHHHHHHHcCC---CCCHHH---H--
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLS----AGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEV---T--   85 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~----~~di~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~--   85 (182)
                      ++.+|+|+|+|||||||+++.|++.++..  ++.    .++.+++...              .+.   ......   .  
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~   68 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIK--------------EAKKKDLLTPLTFSLIHA   68 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHH--------------HHTTTSCCCHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHh--------------ccccccCCCHHHHHHHHH
Confidence            57899999999999999999999999863  332    1222222221              111   111110   0  


Q ss_pred             -------HHHHHHHHHhcCCCcEEEeCCCCCHHH--------HHHHHHH--hCCCCcEEEEEecCHHHHHHHHH-hhh
Q 030176           86 -------IKLLQKAMEESGNDKFLIDGFPRNEEN--------RAAFEAV--TKIEPEFVLFFDCSEEEMERRIL-NRN  145 (182)
Q Consensus        86 -------~~~l~~~l~~~~~~~~ildg~~~~~~q--------~~~l~~~--~~~~~~~vI~ld~~~~~l~~R~~-~R~  145 (182)
                             .+.+...+  ..+..+|+|+++.....        ...+...  ....++++|+|++|.+++.+|+. +|.
T Consensus        69 ~~r~~~~~~~i~~~l--~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~  144 (213)
T 2plr_A           69 TDFSDRYERYILPML--KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR  144 (213)
T ss_dssp             HHHHHHHHHTHHHHH--HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHH--hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence                   01111222  23567889987653211        0112221  12348999999999999999999 774

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.31  E-value=7.3e-12  Score=93.09  Aligned_cols=43  Identities=21%  Similarity=0.365  Sum_probs=38.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS   62 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~   62 (182)
                      .-.+|+|+|++||||||+++.|++.+|+.+++.|++.++....
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~   53 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE   53 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence            3468999999999999999999999999999999998877664

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.30  E-value=7.2e-12  Score=95.96  Aligned_cols=144  Identities=13%  Similarity=0.203  Sum_probs=77.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC---Cc-EecHHHHHHHHHHcCChhhHHHHHHHHcC---CCCCHHHH-----
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YT-HLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPSEVT-----   85 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~-~~~~~di~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----   85 (182)
                      .+++.+|+|.|++||||||+++.|++.++   +. ....    ++  ..+...+..+++++..+   ..+.....     
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~   97 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT----RE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVY   97 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee----cC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHH
Confidence            35678999999999999999999998874   33 2211    11  12445566666666422   22332211     


Q ss_pred             ---HHHHHHHHHh--cCCCcEEEeCCCC------------CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           86 ---IKLLQKAMEE--SGNDKFLIDGFPR------------NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        86 ---~~~l~~~l~~--~~~~~~ildg~~~------------~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                         .+.+.+.+..  ..+..+|.|.|..            .......+....  ...||++||||+|++++.+|+.+|..
T Consensus        98 A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~  177 (236)
T 3lv8_A           98 AARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE  177 (236)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence               1111111211  2467888886521            122233333322  35799999999999999999998842


Q ss_pred             cCCCCCcchHHHHHHHHHhhhh
Q 030176          147 VRQKLPFSWGVFCLFIMLSFSS  168 (182)
Q Consensus       147 ~r~~~~~~~~~~~~~~~~~~~~  168 (182)
                      . ........+|..-++..|..
T Consensus       178 ~-dr~E~~~~~~~~rv~~~y~~  198 (236)
T 3lv8_A          178 L-DRIEKMDISFFERARERYLE  198 (236)
T ss_dssp             C-CTTTTSCHHHHHHHHHHHHH
T ss_pred             c-chhhhhHHHHHHHHHHHHHH
Confidence            1 11111124565556555533

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.29  E-value=4.1e-11  Score=87.95  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=66.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH---H
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---I   86 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~   86 (182)
                      .....++.+|+|+|++||||||+++.|++.++     ..+++.+.+ +.....              ...+.....   .
T Consensus         7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~--------------~~~~~~~~r~~~~   71 (186)
T 2yvu_A            7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSE--------------GAGFTREERLRHL   71 (186)
T ss_dssp             -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTT--------------TCCCCHHHHHHHH
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhh--------------ccCCChhhHHHHH
Confidence            33446789999999999999999999998875     234555444 322111              111111111   1


Q ss_pred             HH---HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHh
Q 030176           87 KL---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        87 ~~---l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      ..   +...+. ..+..++.|+.......+..+.....  ..|+++|||++|.+++.+|+..
T Consensus        72 ~~~~~~~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           72 KRIAWIARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             HHHHHHHHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             HHHHHHHHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            11   111112 23456667876544444444433321  1478999999999999999754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.29  E-value=8e-11  Score=87.56  Aligned_cols=109  Identities=17%  Similarity=0.158  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh---CCc--EecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH---H-
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---K-   87 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l---g~~--~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-   87 (182)
                      ...++.+|+|+|++||||||+++.|++.+   |..  +++.+++.... ..              +..+..+...   . 
T Consensus        21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~-~~--------------~~~~~~~~~~~~~~~   85 (200)
T 3uie_A           21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL-NR--------------DLSFKAEDRAENIRR   85 (200)
T ss_dssp             HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT-TT--------------TCCSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh-hc--------------ccCcChHHHHHHHHH
Confidence            44678999999999999999999999988   655  77776553211 10              1111111111   1 


Q ss_pred             --HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176           88 --LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus        88 --~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~  141 (182)
                        .+...+. ..+..++.+........+..+.........++|||++|.+++.+|+
T Consensus        86 ~~~~~~~~~-~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A           86 VGEVAKLFA-DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             HHHHHHHHH-HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred             HHHHHHHHH-hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence              1112222 2345565655444556666665544433446799999999999997

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.28  E-value=1.8e-10  Score=87.86  Aligned_cols=44  Identities=32%  Similarity=0.454  Sum_probs=38.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      +..++.+|+|+|++||||||+++.|++.+|+.+++.|++++...
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~   55 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   55 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcce
Confidence            45778899999999999999999999999999999999988643

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.27  E-value=3.5e-11  Score=89.08  Aligned_cols=30  Identities=30%  Similarity=0.558  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~   51 (182)
                      ++|+|+|++||||||+++.|++.++..++.
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            369999999999999999999999986654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.24  E-value=2.6e-10  Score=87.12  Aligned_cols=42  Identities=26%  Similarity=0.394  Sum_probs=37.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      ..+.+|+|+||+||||||+++.|++.+|+.+++.|.+++...
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~   48 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT   48 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence            456799999999999999999999999999999999987754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.22  E-value=2.7e-11  Score=91.03  Aligned_cols=40  Identities=20%  Similarity=0.309  Sum_probs=36.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~   59 (182)
                      ++.+|+|+|++||||||+++.|++.+|+.+++.|++++..
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~   41 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL   41 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence            3568999999999999999999999999999999998764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.22  E-value=8.5e-11  Score=85.50  Aligned_cols=113  Identities=17%  Similarity=0.213  Sum_probs=69.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH----HHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI----KLLQ   90 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~   90 (182)
                      ++.++++.+++|+|++||||||+++.+.  .+...++.+ .++.......            +.........    ....
T Consensus         3 sl~i~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d-~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~   67 (171)
T 4gp7_A            3 KLTIPELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD-FCRGLMSDDE------------NDQTVTGAAFDVLHYIVS   67 (171)
T ss_dssp             EEEEESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH-HHHHHHCSST------------TCGGGHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH-HHHHHhcCcc------------cchhhHHHHHHHHHHHHH
Confidence            3456789999999999999999999755  234444443 3333222111            0111111111    1112


Q ss_pred             HHHHhcCCCcEEEeCCCC---CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           91 KAMEESGNDKFLIDGFPR---NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        91 ~~l~~~~~~~~ildg~~~---~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+ . .+...+++....   .++|+..+++++..+|.+++ ||+|+..+..|..+|.
T Consensus        68 ~~~-~-~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~ll-lDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           68 KRL-Q-LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVV-FNLPEKVCQERNKNRT  122 (171)
T ss_dssp             HHH-H-TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEE-ECCCHHHHHHHHHTCS
T ss_pred             HHH-h-CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEE-EeCCHHHHHHHHhccc
Confidence            222 1 234455665432   37888899999988896555 9999999999988763

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.21  E-value=5.8e-12  Score=94.11  Aligned_cols=121  Identities=19%  Similarity=0.176  Sum_probs=72.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   95 (182)
                      .+.++.+|+|+|++||||||+++.|++.+ ++.+++.|++++....... ....+.++ .....+......+.+...+..
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~~i~~~l~~   94 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIET-DKNGFLQY-DVLEALNMEKMMSAISCWMES   94 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCB-CTTSCBCC-SSGGGBCHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhc-cccCCChh-HHHHHhHHHHHHHHHHHHHhC
Confidence            45778899999999999999999999888 7888998877643211100 00000000 000001122233333332221


Q ss_pred             -------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           96 -------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        96 -------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                                   .....+|+||+.....      ..+...+|.+|++++|.+.+.+|+.+|.
T Consensus        95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~~------~~~~~~~d~~i~l~~~~~~~~~R~~~R~  151 (207)
T 2qt1_A           95 ARHSVVSTDQESAEEIPILIIEGFLLFNY------KPLDTIWNRSYFLTIPYEECKRRRSTRV  151 (207)
T ss_dssp             HTTSSCCC-----CCCCEEEEECTTCTTC------GGGTTTCSEEEEEECCHHHHHHHHHHSC
T ss_pred             CCCCCcCCCeeecCCCCEEEEeehHHcCc------HHHHHhcCeeEEEECCHHHHHHHHHHcC
Confidence                         1245788999643210      1122357899999999999999998873

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.20  E-value=1.3e-10  Score=87.06  Aligned_cols=107  Identities=14%  Similarity=0.177  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH----H--
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE----V--   84 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg------~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--   84 (182)
                      ...++.+|+|+|++||||||+++.|++.++      ..+++.+.+ +......              ..+...    .  
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~--------------~~~~~~~r~~~~~   85 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKD--------------LGFSEADRNENIR   85 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTT--------------CCSSHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccc--------------cCCCHHHHHHHHH
Confidence            456789999999999999999999999886      667775444 2211110              011111    1  


Q ss_pred             -HHHHHHHHHHhcCCCcEEEeCCCCC-HHHHHHHHHHhC--------CCCcEEEEEecCHHHHHHHH
Q 030176           85 -TIKLLQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTK--------IEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus        85 -~~~~l~~~l~~~~~~~~ildg~~~~-~~q~~~l~~~~~--------~~~~~vI~ld~~~~~l~~R~  141 (182)
                       +...+...+.  .+..+|+| +... ...+..+.....        ..|+++|||++|.+++.+|+
T Consensus        86 ~~~~~~~~~l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A           86 RIAEVAKLFAD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             HHHHHHHHHHH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             HHHHHHHHHHH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence             1112222232  34567778 4332 233444443221        24689999999999999994

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.20  E-value=1.4e-10  Score=86.68  Aligned_cols=114  Identities=16%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC----------------H-
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----------------S-   82 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-   82 (182)
                      +..+|.|.|++||||||+++.||+++|+.++| ++++.....   ..|.....+...+...+                . 
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~---~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~   80 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAK---DGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQ   80 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTC---C---------------------------------C
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHH---hcCCCHHHHHHHhhhchhHHHHHhccccccccccH
Confidence            34689999999999999999999999999999 787654211   11111111100011000                0 


Q ss_pred             ---HHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           83 ---EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        83 ---~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                         +...+.+.++... ...++|++|-...  .  -+..   ....+.|||++|.+.+.+|+.++.
T Consensus        81 ~~~~~~~~~i~~la~~-~~~~~Vi~Gr~g~--~--vl~~---~~~~~~V~L~A~~e~r~~R~~~~~  138 (201)
T 3fdi_A           81 DIAIRQFNFIRKKANE-EKESFVIVGRCAE--E--ILSD---NPNMISAFILGDKDTKTKRVMERE  138 (201)
T ss_dssp             HHHHHHHHHHHHHHHT-SCCCEEEESTTHH--H--HTTT---CTTEEEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh-cCCCEEEEECCcc--h--hcCC---CCCeEEEEEECCHHHHHHHHHHHh
Confidence               1223333333210 2245667764211  1  1110   112589999999999999998763

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.20  E-value=6e-11  Score=90.06  Aligned_cols=120  Identities=15%  Similarity=0.148  Sum_probs=60.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEec-HHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH-------
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLS-AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------   85 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~~-~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   85 (182)
                      ..++.+|+|.|++||||||+++.|++.++.    .++. ..      ...+...+..+++++.....+.....       
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr------eP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~   91 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR------EPGGTLLNESVRNLLFKAQGLDSLSELLFFIAM   91 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE------SSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeee------CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            367899999999999999999999987653    2221 10      01123344444454443222332111       


Q ss_pred             -HHHHHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHhC-CCCcEEEEEecCHHHHHHHHHhh
Q 030176           86 -IKLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        86 -~~~l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~~-~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                       .+.+.+.+..  ..+..+|.|.|..+            ......+..... ..||++||||+|+++..+|+ +|
T Consensus        92 R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~r  165 (223)
T 3ld9_A           92 RREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CK  165 (223)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-----------
T ss_pred             HHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-cc
Confidence             1111121111  23567888875321            222233333232 47999999999999999999 44

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.17  E-value=2.5e-10  Score=83.25  Aligned_cols=113  Identities=20%  Similarity=0.286  Sum_probs=60.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecH-HHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHH--HHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA-GDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK--LLQKA   92 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~-~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~   92 (182)
                      .++.+|+|+|++||||||+++.|++.+   |+.++.. ++.++......  .+...++        .+.....  .....
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~   72 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKN--LGFSPED--------REENVRRIAEVAKL   72 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTT--CCSSHHH--------HHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhc--ccccccc--------HHHHHHHHHHHHHH
Confidence            457899999999999999999999988   8766532 23332211110  0000000        0011111  11122


Q ss_pred             HHhcCCCcEEEeCCCC-CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHh
Q 030176           93 MEESGNDKFLIDGFPR-NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        93 l~~~~~~~~ildg~~~-~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                      +.. .+ .+++.++.. ...++..+....  ...|+++|||++|.+++.+|+.+
T Consensus        73 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~  124 (179)
T 2pez_A           73 FAD-AG-LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  124 (179)
T ss_dssp             HHH-TT-CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             HHH-CC-CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhh
Confidence            222 23 344544432 222222222221  12478899999999999999754

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.14  E-value=1.6e-09  Score=82.25  Aligned_cols=42  Identities=19%  Similarity=0.305  Sum_probs=35.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~   61 (182)
                      ....+|+|+|++||||||+++.||+++|+.+++ ++++.....
T Consensus        12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~   53 (223)
T 3hdt_A           12 NKNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE   53 (223)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence            345799999999999999999999999999999 566555443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.13  E-value=2.8e-10  Score=84.80  Aligned_cols=30  Identities=27%  Similarity=0.463  Sum_probs=26.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+.++.+|+|+|||||||||+++.|++.++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            457788999999999999999999999884

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.09  E-value=2.5e-10  Score=86.77  Aligned_cols=31  Identities=26%  Similarity=0.295  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ......++.+|+|.|++||||||+++.|+..
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3445678899999999999999999999866

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.09  E-value=2.4e-09  Score=79.73  Aligned_cols=133  Identities=20%  Similarity=0.311  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH----------HHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV----------TIKL   88 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~   88 (182)
                      ++|+|.|+.||||||+++.|++.|   |+.++...+      ......+..+.+.+......+...          ..+.
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999877   554442210      012223333333333332222111          1111


Q ss_pred             HHHHHHhcCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcc
Q 030176           89 LQKAMEESGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFS  154 (182)
Q Consensus        89 l~~~l~~~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~  154 (182)
                      +...+  ..+..+|.|.|..+            ......+....  ...||++|+||.|++...+|..+|+  |    ..
T Consensus        75 I~~~L--~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d--r----~e  146 (197)
T 3hjn_A           75 IKQYL--SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN--R----FE  146 (197)
T ss_dssp             HHHHH--TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C--T----TC
T ss_pred             HHHHH--HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC--c----cc
Confidence            22222  34677888876321            22222332222  4569999999999999999966552  2    22


Q ss_pred             hHHHHHHHHHhhhh
Q 030176          155 WGVFCLFIMLSFSS  168 (182)
Q Consensus       155 ~~~~~~~~~~~~~~  168 (182)
                      ..+|.+-++..|..
T Consensus       147 ~~ef~~rv~~~y~~  160 (197)
T 3hjn_A          147 KREFLERVREGYLV  160 (197)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            23566666666544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.04  E-value=7.8e-10  Score=85.38  Aligned_cols=122  Identities=11%  Similarity=0.153  Sum_probs=66.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-HHHHc---CChhhHH--HH-HHHHcC----CCCCHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-AEIKS---GSENGTM--IQ-NMIKEG----KIVPSEVTIKLLQ   90 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-~~~~~---~~~~~~~--~~-~~~~~~----~~~~~~~~~~~l~   90 (182)
                      ++|+|+||+||||||+++.|++.++..+++.|++.. .....   .......  .. .++...    ..+......+.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            479999999999999999999999999998877631 11100   0000000  00 000000    0122222222333


Q ss_pred             HHHHh-cCCCcEEEeCCCCCHHHHHHHHHH----hCCCCcEEEEEecCH-HHHHHHHHhhhc
Q 030176           91 KAMEE-SGNDKFLIDGFPRNEENRAAFEAV----TKIEPEFVLFFDCSE-EEMERRILNRNQ  146 (182)
Q Consensus        91 ~~l~~-~~~~~~ildg~~~~~~q~~~l~~~----~~~~~~~vI~ld~~~-~~l~~R~~~R~~  146 (182)
                      ..+.- ..+..+|+++-..  .....+...    .+. ...+||+++|. +.+.+|+.+|..
T Consensus        82 ~~i~~~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~-~~~~i~l~~~~~e~l~~Rl~~R~~  140 (253)
T 2ze6_A           82 FEVDWRKSEEGLILEGGSI--SLLNCMAKSPFWRSGF-QWHVKRLRLGDSDAFLTRAKQRVA  140 (253)
T ss_dssp             HHHHTTTTSSEEEEEECCH--HHHHHHHHCTTTTSSC-EEEEEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEeccHH--HHHHHHHhcccccccC-ceEEEEecchhHHHHHHHHHHHHH
Confidence            33311 2345566765322  233333332    111 12688899997 999999999964

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.02  E-value=3e-09  Score=91.57  Aligned_cols=115  Identities=16%  Similarity=0.180  Sum_probs=64.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecH-HHHHHHHHHcCChhh-HHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA-GDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAM   93 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~-~di~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l   93 (182)
                      .++.+|+|+|++||||||+++.|++.+   |+.+++. ++.++.......... ....+.+        +.+.+.+...+
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva~~~l  121 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFA  121 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHHHHHH
Confidence            378899999999999999999999998   8766544 344443222110000 0000000        01122222222


Q ss_pred             HhcCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHh
Q 030176           94 EESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILN  143 (182)
Q Consensus        94 ~~~~~~~~ildg~~~~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~  143 (182)
                        ..+..++.+........+..+...+  ...++++|||++|.+++.+|+.+
T Consensus       122 --~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          122 --DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             --HTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             --hCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence              2344555552212233344444333  12367899999999999999763

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.02  E-value=1.2e-08  Score=86.37  Aligned_cols=125  Identities=16%  Similarity=0.292  Sum_probs=72.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCc-----EecHHHHHHHHHHcCChhhHHHHHHHHcCCC---CCHHHHHHHH-
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT-----HLSAGDLLRAEIKSGSENGTMIQNMIKEGKI---VPSEVTIKLL-   89 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~-----~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l-   89 (182)
                      ..+.+|+++|.|||||||+++.|++.+++.     .++.|++........... ..+..   .+..   .....+...+ 
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-~~f~~---~~~~~~~~re~~~~~~l~  108 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-NFFRP---DNEEAMKVRKQCALAALR  108 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-GGGCT---TCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-cccCc---ccHHHHHHHHHHHHHHHH
Confidence            456799999999999999999999988532     467788655544321110 00000   0000   0001111122 


Q ss_pred             --HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecC-HHHHHHHHHhhhccC
Q 030176           90 --QKAMEESGNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCS-EEEMERRILNRNQVR  148 (182)
Q Consensus        90 --~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~-~~~l~~R~~~R~~~r  148 (182)
                        ...+....+..+|+|.......++..+...+   +. ..++|++.+| .+.+.+|+.+|...+
T Consensus       109 ~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~-~v~~l~~~~~d~e~i~~ri~~r~~~r  172 (520)
T 2axn_A          109 DVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDF-KAFFIESVCDDPTVVASNIMEVKISS  172 (520)
T ss_dssp             HHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEEECCCHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCChHHHHHHHHHhhhhcC
Confidence              2222224567889999878777776665443   22 2245666677 677778887775443

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.98  E-value=7.1e-10  Score=83.76  Aligned_cols=140  Identities=11%  Similarity=0.195  Sum_probs=81.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCC-CCCHHHH-----------H
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPSEVT-----------I   86 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~   86 (182)
                      .++.+|+|.|++||||||+++.|++.++.....    ++. -..+...|..+++++.... .......           .
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~   77 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV   77 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEe-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999852111    111 0123455666666665543 2221110           0


Q ss_pred             HHHHHHHHhcCCCcEEEeCCCCC-HH----------HHHHHHHH--hCCCCcEEEEE-ecCHHHHHHHHHhhhccCCCCC
Q 030176           87 KLLQKAMEESGNDKFLIDGFPRN-EE----------NRAAFEAV--TKIEPEFVLFF-DCSEEEMERRILNRNQVRQKLP  152 (182)
Q Consensus        87 ~~l~~~l~~~~~~~~ildg~~~~-~~----------q~~~l~~~--~~~~~~~vI~l-d~~~~~l~~R~~~R~~~r~~~~  152 (182)
                      +.+...+  ..+..+|.|.|..+ ..          ...++...  ....||++||| |.|++++.+|+..|.     +.
T Consensus        78 ~~I~paL--~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~-----dr  150 (216)
T 3tmk_A           78 DKIKKDL--LEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD-----ER  150 (216)
T ss_dssp             HHHHHHH--HTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC-----CT
T ss_pred             HHHHHHH--HcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc-----cc
Confidence            1122222  23667888876322 11          12233322  13469999999 999999998875331     11


Q ss_pred             cchHHHHHHHHHhhhhhc
Q 030176          153 FSWGVFCLFIMLSFSSCI  170 (182)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~  170 (182)
                      .....|.+-++..|..-+
T Consensus       151 ~E~~~f~~rvr~~Y~~la  168 (216)
T 3tmk_A          151 YETVKFQEKVKQTFMKLL  168 (216)
T ss_dssp             TCCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            222466666666555443

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.95  E-value=2.2e-10  Score=87.57  Aligned_cols=117  Identities=16%  Similarity=0.163  Sum_probs=67.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH------------------HHHHHc--C-C--hhhHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL------------------RAEIKS--G-S--ENGTMI   70 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~------------------~~~~~~--~-~--~~~~~~   70 (182)
                      -++.+.++.+++|+||+|||||||++.|+   |+...+.|++.                  +.....  + .  ......
T Consensus        24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv  100 (235)
T 3tif_A           24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIG---CLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA  100 (235)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCH
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcH
Confidence            35678899999999999999999999999   54433333221                  111110  0 0  011111


Q ss_pred             HHHHHc----C--CCCCHHHHHHHHHHHHHhcCCCcE----EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           71 QNMIKE----G--KIVPSEVTIKLLQKAMEESGNDKF----LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        71 ~~~~~~----~--~~~~~~~~~~~l~~~l~~~~~~~~----ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+..    .  ...+.+...+.+.+.+...+....    -.......++|+..+++++..+|+++| +|+|+
T Consensus       101 ~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll-lDEPt  173 (235)
T 3tif_A          101 LENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL-ADQPT  173 (235)
T ss_dssp             HHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            121111    1  123333333444444443221111    122345569999999999999999877 99998

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.95  E-value=1.3e-08  Score=74.63  Aligned_cols=114  Identities=13%  Similarity=0.147  Sum_probs=63.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S   96 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~-~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~   96 (182)
                      +.+++|+||+||||||+++.|++.++. .+++.+++....... ..+....          .......+.+......  .
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~   71 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESD----------ELLALTWKNITDLTVNFLL   71 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCH----------HHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccch----------hHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999987765 677776654321000 0000000          0001111222111111  1


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHH---hCCC-CcEEEEEecCHHHHHHHHHhhh
Q 030176           97 GNDKFLIDGFPRNEENRAAFEAV---TKIE-PEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l~~~---~~~~-~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+..+++|++. .......+...   .+.. .-.+++|++|.+.+.+|...|.
T Consensus        72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~  123 (189)
T 2bdt_A           72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (189)
T ss_dssp             TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence            23467788853 33333333222   1222 2246779999999999999874

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.93  E-value=5.3e-10  Score=90.53  Aligned_cols=117  Identities=14%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHH---cCC-----hhhHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIK---SGS-----ENGTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~---~~~-----~~~~~~~   71 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|.+..              ....   ...     .......
T Consensus        47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~---GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~  123 (366)
T 3tui_C           47 VSLHVPAGQIYGVIGASGAGKSTLIRCVN---LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF  123 (366)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHH
T ss_pred             eEEEEcCCCEEEEEcCCCchHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHH
Confidence            35678999999999999999999999999   654443333211              1111   000     0011111


Q ss_pred             HHHHc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+..   ....+.+...+.+.+.+..-+....   ........++|+..+++++..+|++++ +|+|+
T Consensus       124 env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLL-lDEPT  191 (366)
T 3tui_C          124 GNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL-CDQAT  191 (366)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEE-EESTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence            11100   0123333333334444433111111   122334459999999999999999877 99998

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.91  E-value=1.4e-08  Score=86.97  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=64.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH-------H
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-------V   84 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg------~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~   84 (182)
                      ..++.+|+|+|++||||||+++.|++.++      +..++.+. ++......              ..+...       .
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~--------------~~f~~~er~~~i~r  457 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSE--------------LGFTREDRHTNIQR  457 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTT--------------CCCSHHHHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccc--------------cCCChhHHHHHHHH
Confidence            35678999999999999999999999976      24555544 44432211              111111       1


Q ss_pred             HHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHH
Q 030176           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL  142 (182)
Q Consensus        85 ~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~  142 (182)
                      +...+...+.  .+..+|.+........+..+...+.. .++++|||++|.+++.+|..
T Consensus       458 i~~v~~~~~~--~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~  514 (573)
T 1m8p_A          458 IAFVATELTR--AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK  514 (573)
T ss_dssp             HHHHHHHHHH--TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred             HHHHHHHHHh--CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc
Confidence            1122222222  24556666443334444444443321 24589999999999999964

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.91  E-value=2.4e-08  Score=74.32  Aligned_cols=119  Identities=15%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHc--CChhhHHHHHHHHcCCCCCHHHHHHH------
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTIKL------   88 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------   88 (182)
                      +..+|+|+|.|||||+|+++.+.+.+|   +..+..+|.+++....  +.+....+.+.  ....-.......+      
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~--~ykE~~R~~m~~~g~~~R~   87 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS--TYKEAFRKDMIRWGEEKRQ   87 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC---------CCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchh--hhHHHHHHHHHHHHHHHHh
Confidence            567999999999999999999988785   6678999999864321  11111100000  0000000011100      


Q ss_pred             ------HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176           89 ------LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (182)
Q Consensus        89 ------l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~  142 (182)
                            +...+...+...+|+++. +...+++.|.+.++ ..-++|.+.++++++.+|..
T Consensus        88 ~d~~~~~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~~~g-~~~~iirI~as~~~R~~Rg~  145 (202)
T 3ch4_B           88 ADPGFFCRKIVEGISQPIWLVSDT-RRVSDIQWFREAYG-AVTQTVRVVALEQSRQQRGW  145 (202)
T ss_dssp             HCTTTTHHHHSBTCCCSEEEECCC-CSHHHHHHHHHHHG-GGEEEEEEEECHHHHHHTTC
T ss_pred             cCchHHHHHHHHhcCCCcEEEeCC-CCHHHHHHHHHhCC-CcEEEEEEECCHHHHHHHhh
Confidence                  011111223457889998 88899999988775 22368899999999999953

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.91  E-value=5.2e-10  Score=83.27  Aligned_cols=116  Identities=20%  Similarity=0.210  Sum_probs=52.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh---CCc--EecHHHHHHHHHH---cCChhhHHHHHHHHcCCCCCHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIK---SGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l---g~~--~~~~~di~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l   89 (182)
                      ..++.+++|+|++||||||+++.|+..+   +..  ..+.+........   .+...+..   +..  ..+..+...+.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~---~~~--~~~d~~~l~~~v   93 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE---YYY--LQWDVEWLTHQL   93 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH---HHH--TSSCHHHHHHHT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC---CCc--cccCHHHHHHHH
Confidence            4677899999999999999999999865   432  3333433221111   11111111   110  112222222221


Q ss_pred             HHHH-----------------------HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           90 QKAM-----------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        90 ~~~l-----------------------~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ...+                       .......+|+|+.......   +    ....|.+||+++|.+++++|+.+|+
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~----~~~~d~~i~v~~~~~~~~~R~~~R~  165 (201)
T 1rz3_A           94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---W----RPFFDFVVYLDCPREIRFARENDQV  165 (201)
T ss_dssp             GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---T----GGGCSEEEEECCC------------
T ss_pred             HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---H----HhhcCEEEEEeCCHHHHHHHHhcCC
Confidence            1000                       0013457888885332111   1    1125799999999999999999885

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.91  E-value=4.3e-10  Score=87.92  Aligned_cols=116  Identities=21%  Similarity=0.325  Sum_probs=66.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-------------HHHHH-----cCCh----hhHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-------------RAEIK-----SGSE----NGTMIQN   72 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-------------~~~~~-----~~~~----~~~~~~~   72 (182)
                      ++++.++.+++|+||+|||||||++.|+   |+...+.|++.             .....     .+..    ......+
T Consensus        28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e  104 (275)
T 3gfo_A           28 NMNIKRGEVTAILGGNGVGKSTLFQNFN---GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ  104 (275)
T ss_dssp             EEEEETTSEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHH
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHH---cCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHH
Confidence            5667899999999999999999999999   54332222211             11111     0100    0111111


Q ss_pred             HHH---cCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 MIK---EGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.   .....+.+...+.+.+.+..-+-...   -.......++|+..+++++..+|+++| ||+|+
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLl-LDEPt  171 (275)
T 3gfo_A          105 DVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLI-LDEPT  171 (275)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEE-EECTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence            111   11223444444444554443211111   122345569999999999999999887 99998

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.90  E-value=8.7e-09  Score=87.70  Aligned_cols=113  Identities=17%  Similarity=0.147  Sum_probs=66.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~-----~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   93 (182)
                      ..+.+|+|+|++||||||+++.|++.++.     .+++.+. +++...........-..  .+     -+.+...+...+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~l~~~~~f~~~er~--~~-----l~~i~~~~~~~l  441 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTHLSRGLGFSKEDRI--TN-----ILRVGFVASEIV  441 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHHTCTTCCSSHHHHH--HH-----HHHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhhhcccccccHHHHH--HH-----HHHHHHHHHHHH
Confidence            45789999999999999999999998863     5666544 44433211100000000  00     001111222222


Q ss_pred             HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEEecCHHHHHHHHH
Q 030176           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRIL  142 (182)
Q Consensus        94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~-~vI~ld~~~~~l~~R~~  142 (182)
                      .  .+..+|+|........+..+...+. .++ ++|+|++|.+++.+|+.
T Consensus       442 ~--~G~~VI~d~~~~~~~~r~~~~~~l~-~~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          442 K--HNGVVICALVSPYRSARNQVRNMME-EGKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             H--TTCEEEEECCCCCHHHHHHHHTTSC-TTCEEEEEEECCGGGHHHHCC
T ss_pred             h--CCCEEEEEcCCCCHHHHHHHHHHhh-cCCEEEEEEeCCHHHHHHHhh
Confidence            2  3567888864444444444444443 256 89999999999999985

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.90  E-value=4.1e-11  Score=96.92  Aligned_cols=117  Identities=16%  Similarity=0.282  Sum_probs=68.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc----------CChh-----------hHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----------GSEN-----------GTMIQN   72 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~----------~~~~-----------~~~~~~   72 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+....          ....           ..+..+
T Consensus        23 vsl~i~~Ge~~~llGpsGsGKSTLLr~ia---Gl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~e   99 (359)
T 3fvq_A           23 ISLSLDPGEILFIIGASGCGKTTLLRCLA---GFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYR   99 (359)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHH
T ss_pred             eEEEEcCCCEEEEECCCCchHHHHHHHHh---cCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHH
Confidence            35677899999999999999999999999   76555554443221100          0001           112222


Q ss_pred             HHHcCC---CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 MIKEGK---IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+..+.   ..+.+...+.+.+.+..-+-...   -.......++|+..+++++..+|++++ ||+|+
T Consensus       100 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL-LDEPt  166 (359)
T 3fvq_A          100 NIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL-LDEPF  166 (359)
T ss_dssp             HHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            222221   12222223333333333111111   122344569999999999999998777 99998

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.89  E-value=1.7e-09  Score=83.60  Aligned_cols=33  Identities=12%  Similarity=0.132  Sum_probs=27.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh-CCcEe
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHL   50 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l-g~~~~   50 (182)
                      ..++.+|+|.|++||||||+++.|++.+ +..++
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i   54 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV   54 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            3567899999999999999999999998 55444

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.87  E-value=4.1e-10  Score=91.69  Aligned_cols=117  Identities=19%  Similarity=0.227  Sum_probs=68.3

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhH-----------HHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGT-----------MIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~-----------~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+....      ....+.           ...+.+..
T Consensus        22 vsl~i~~Ge~~~llGpsGsGKSTLLr~ia---Gl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~   98 (381)
T 3rlf_A           22 INLDIHEGEFVVFVGPSGCGKSTLLRMIA---GLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSF   98 (381)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTH
T ss_pred             eEEEECCCCEEEEEcCCCchHHHHHHHHH---cCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHH
Confidence            35677899999999999999999999999   76655555442211110      000111           11111000


Q ss_pred             ---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 ---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                         ....+.+...+.+.+.+..-.-...   ........++|+..+++++..+|++++ ||+|+
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL-LDEPt  161 (381)
T 3rlf_A           99 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-LDEPL  161 (381)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE-EESTT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence               0123444344444444443221111   122344559999999999988998777 99998

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.86  E-value=1.6e-09  Score=85.33  Aligned_cols=38  Identities=21%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~   57 (182)
                      ++.+|+|+|++||||||+++.|++.+|     ..+++.|++++
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            457899999999999999999999887     67888888764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.85  E-value=1.9e-09  Score=85.99  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..+.+|+|+|++||||||+++.|+..++
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4567999999999999999999998775

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.85  E-value=8.4e-08  Score=70.84  Aligned_cols=30  Identities=17%  Similarity=0.387  Sum_probs=25.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+.++.+++|+||+|||||||++.|+..+.
T Consensus         3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            3 AMNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             cCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            456788999999999999999999997764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.85  E-value=5.9e-10  Score=90.32  Aligned_cols=116  Identities=22%  Similarity=0.267  Sum_probs=66.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChh-----------hHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSEN-----------GTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~-----------~~~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+....      ....           .....+.+..
T Consensus        22 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~   98 (362)
T 2it1_A           22 INLKIKDGEFMALLGPSGSGKSTLLYTIA---GIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAF   98 (362)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHH
T ss_pred             eEEEECCCCEEEEECCCCchHHHHHHHHh---cCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHH
Confidence            35667899999999999999999999999   66544444432211000      0000           0111111110


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +   ...+.+...+.+.+.+..-.-... .+    .....++|+..+++++..+|++++ ||+|+
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSGGq~QRvalArAL~~~P~lLL-LDEP~  161 (362)
T 2it1_A           99 PLELRKAPREEIDKKVREVAKMLHIDKL-LNRYPWQLSGGQQQRVAIARALVKEPEVLL-LDEPL  161 (362)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCTTC-TTCCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESGG
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchH-hhCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence            0   112333333334444443221111 22    344559999999999999999777 99998

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.84  E-value=9.7e-09  Score=76.50  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLL   56 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg--~~~~~~~di~   56 (182)
                      .++.+|+|+|++|||||||++.|+..++  +.+++.+..+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            5678999999999999999999999888  7777766543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.84  E-value=6.1e-10  Score=90.51  Aligned_cols=116  Identities=19%  Similarity=0.229  Sum_probs=67.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChh-----------hHHHHHHHHcC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSEN-----------GTMIQNMIKEG   77 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~-----------~~~~~~~~~~~   77 (182)
                      ++++.++.+++|.||+|||||||++.|+   |+...+.|++..+....      ....           .....+.+..+
T Consensus        31 sl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~  107 (372)
T 1v43_A           31 NLTIKDGEFLVLLGPSGCGKTTTLRMIA---GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFP  107 (372)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTT
T ss_pred             EEEECCCCEEEEECCCCChHHHHHHHHH---cCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHH
Confidence            5567899999999999999999999999   65544444332111000      0000           11122222222


Q ss_pred             C---CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           78 K---IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        78 ~---~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .   ..+.+...+.+.+.+..-.-...   -.......++|+..+++++..+|++++ ||+|+
T Consensus       108 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL-LDEP~  169 (372)
T 1v43_A          108 LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL-MDEPL  169 (372)
T ss_dssp             CC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence            1   12333333334444433211111   122355679999999999999998777 99998

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.83  E-value=1.1e-08  Score=79.50  Aligned_cols=116  Identities=22%  Similarity=0.317  Sum_probs=64.1

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH----------------HHHHHc--C-C--hhhHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL----------------RAEIKS--G-S--ENGTMIQNM   73 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~----------------~~~~~~--~-~--~~~~~~~~~   73 (182)
                      ++++.++.+++|.||+|||||||++.|+   |+...+.|.+.                +.....  + .  .......+.
T Consensus        44 sl~i~~Gei~~liG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~  120 (263)
T 2olj_A           44 NVHIREGEVVVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNN  120 (263)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHH
T ss_pred             EEEEcCCCEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHH
Confidence            5667899999999999999999999999   54333222221                111110  0 0  001111111


Q ss_pred             HH----cCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IK----EGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~----~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.    .....+.+...+.+.+.+..-+-...   -.......++|+..+++++..+|+++| ||+|+
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll-LDEPt  187 (263)
T 2olj_A          121 ITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML-FDEPT  187 (263)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE-EeCCc
Confidence            11    11112322222333333333111111   122345569999999999999999777 99998

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.82  E-value=8.1e-09  Score=78.76  Aligned_cols=29  Identities=17%  Similarity=0.300  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-CCc
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYT   48 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l-g~~   48 (182)
                      +|.+|+|.|++||||||+++.|++.+ +..
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~   30 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence            46899999999999999999999998 443

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.82  E-value=8.6e-10  Score=89.10  Aligned_cols=117  Identities=19%  Similarity=0.269  Sum_probs=66.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhh-----------HHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENG-----------TMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~-----------~~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+....      ....+           .+..+.+..
T Consensus        34 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~  110 (355)
T 1z47_A           34 VSFQIREGEMVGLLGPSGSGKTTILRLIA---GLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSF  110 (355)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHH
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence            35567899999999999999999999999   65544444332211000      00000           111111110


Q ss_pred             ---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 ---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                         ....+.+...+.+.+.+..-+-...   -.......++|+..+++++..+|++++ ||+|+
T Consensus       111 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL-LDEP~  173 (355)
T 1z47_A          111 GLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL-FDEPF  173 (355)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence               0112333223334444433211111   022344569999999999999999777 99998

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.81  E-value=1.1e-09  Score=83.07  Aligned_cols=116  Identities=17%  Similarity=0.123  Sum_probs=63.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH------------------HHHHc--C-C--hhhHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR------------------AEIKS--G-S--ENGTMIQ   71 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~------------------~~~~~--~-~--~~~~~~~   71 (182)
                      ++.+.++.+++|+||+|||||||++.|+   |+...+.|.+..                  .....  + .  .......
T Consensus        24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  100 (224)
T 2pcj_A           24 SLSVKKGEFVSIIGASGSGKSTLLYILG---LLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTAL  100 (224)
T ss_dssp             EEEEETTCEEEEEECTTSCHHHHHHHHT---TSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHH
Confidence            5667899999999999999999999999   543333222211                  11110  0 0  0001111


Q ss_pred             HHHHc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+..   ....+.+...+.+.+.+..-+-...   -.......++|+..+++++..+|++++ ||+|+
T Consensus       101 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll-LDEPt  168 (224)
T 2pcj_A          101 ENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLF-ADEPT  168 (224)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEE-EESTT
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCC
Confidence            11100   0112222222333344433211111   122345569999999999999999777 99998

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.81  E-value=2.3e-08  Score=79.99  Aligned_cols=29  Identities=17%  Similarity=0.103  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      +++.+|+|.|+-||||||+++.|++.++.
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45689999999999999999999988853

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.81  E-value=3.5e-08  Score=75.46  Aligned_cols=35  Identities=34%  Similarity=0.552  Sum_probs=28.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      -++...++.+|+|+||+|||||||++.|+..+|..
T Consensus        18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             -----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            35677889999999999999999999999988855

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.81  E-value=2.7e-09  Score=80.50  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=62.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------HHc--C-C--hhhHHHHHHH----H-
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------IKS--G-S--ENGTMIQNMI----K-   75 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~~~--~-~--~~~~~~~~~~----~-   75 (182)
                      ++.+.++.+++|.||+|||||||++.|+   |+...+.|++....         ...  + .  .......+.+    . 
T Consensus        29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~  105 (214)
T 1sgw_A           29 TMTIEKGNVVNFHGPNGIGKTTLLKTIS---TYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL  105 (214)
T ss_dssp             EEEEETTCCEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHH
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHh
Confidence            5567889999999999999999999999   54333333221110         000  0 0  0011111111    0 


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.....+.+.++++....... . .-...+...++|+..+++++..+|++++ ||+|+
T Consensus       106 ~~~~~~~~~~~~~l~~~gl~~~-~-~~~~~LSgGqkqrv~laraL~~~p~lll-LDEPt  161 (214)
T 1sgw_A          106 YGVKVNKNEIMDALESVEVLDL-K-KKLGELSQGTIRRVQLASTLLVNAEIYV-LDDPV  161 (214)
T ss_dssp             TTCCCCHHHHHHHHHHTTCCCT-T-SBGGGSCHHHHHHHHHHHHTTSCCSEEE-EESTT
T ss_pred             cCCchHHHHHHHHHHHcCCCcC-C-CChhhCCHHHHHHHHHHHHHHhCCCEEE-EECCC
Confidence            1111112333333332211111 1 1122345569999999999999999877 99996

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.80  E-value=4.7e-10  Score=90.80  Aligned_cols=117  Identities=18%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CCh-----------hhHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSE-----------NGTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~-----------~~~~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+....      ...           ......+.+..
T Consensus        22 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~   98 (359)
T 2yyz_A           22 VSFEVKDGEFVALLGPSGCGKTTTLLMLA---GIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAF   98 (359)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHG
T ss_pred             eEEEEcCCCEEEEEcCCCchHHHHHHHHH---CCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence            35667899999999999999999999999   66554444432211000      000           01122222222


Q ss_pred             CC---CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK---IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~---~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.   ..+.+...+.+.+.+..-.-...   -.......++|+..+++++..+|++++ ||+|+
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL-LDEP~  161 (359)
T 2yyz_A           99 PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL-FDEPL  161 (359)
T ss_dssp             GGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence            21   11222222233333333111111   022344569999999999999999777 99998

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.80  E-value=6.2e-10  Score=86.65  Aligned_cols=116  Identities=17%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHc-----CChhhHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKS-----GSENGTMIQNMIK   75 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~-----~~~~~~~~~~~~~   75 (182)
                      ++++.++.+++|+||+|||||||++.|+   |+...+.|++..              .....     .........+.+.
T Consensus        31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  107 (266)
T 4g1u_C           31 SLHIASGEMVAIIGPNGAGKSTLLRLLT---GYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQ  107 (266)
T ss_dssp             EEEEETTCEEEEECCTTSCHHHHHHHHT---SSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHH
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHH
Confidence            5667899999999999999999999999   654443333211              11110     0001112222222


Q ss_pred             cCC-CCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCC------CCcEEEEEecCH
Q 030176           76 EGK-IVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKI------EPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~~-~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~------~~~~vI~ld~~~  134 (182)
                      .+. ........+.+.+.+..-.-   ...-.......++|+..+++++..      +|+++| +|+|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl-lDEPt  175 (266)
T 4g1u_C          108 MGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF-LDEPT  175 (266)
T ss_dssp             GGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE-ECCCC
T ss_pred             hhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE-EeCcc
Confidence            211 01111111222333322110   001123355669999999999977      898777 99997

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.79  E-value=1.5e-08  Score=74.18  Aligned_cols=120  Identities=21%  Similarity=0.274  Sum_probs=63.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   93 (182)
                      ..+.++.+++|+|+|||||||+++.|++.++.  ..++.+++.... ......+...+...      +...+.+.+....
T Consensus         4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~------~~~~v~~~l~~~~   76 (191)
T 1zp6_A            4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ------QNRMIMQIAADVA   76 (191)
T ss_dssp             --CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH------HHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchhh------hhHHHHHHHHHHH
Confidence            34678899999999999999999999976543  366766654321 10000000000000      0111222221111


Q ss_pred             --HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           94 --EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        94 --~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                        ....+..++++...... ....+.. ... +-..+++.++.+.+++|...|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~-~l~~~~~-~~~-~~~~ls~~~~~~v~~~R~~~r~  127 (191)
T 1zp6_A           77 GRYAKEGYFVILDGVVRPD-WLPAFTA-LAR-PLHYIVLRTTAAEAIERCLDRG  127 (191)
T ss_dssp             HHHHHTSCEEEECSCCCTT-TTHHHHT-TCS-CEEEEEEECCHHHHHHHHHTTC
T ss_pred             HHHhccCCeEEEeccCcHH-HHHHHHh-cCC-CeEEEEecCCHHHHHHHHHhcC
Confidence              11223456677754321 1112211 122 2257889999999999999883

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.77  E-value=1.3e-09  Score=84.32  Aligned_cols=116  Identities=13%  Similarity=0.174  Sum_probs=62.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH---------HHHH----c--C---ChhhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR---------AEIK----S--G---SENGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~---------~~~~----~--~---~~~~~~~~~~~~~   76 (182)
                      ++.+.++.+++|.||+|||||||++.|+   |+...+.|.+..         ....    .  +   .....+..+.+..
T Consensus        35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~  111 (256)
T 1vpl_A           35 SFEIEEGEIFGLIGPNGAGKTTTLRIIS---TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRF  111 (256)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHH
Confidence            5677899999999999999999999999   544333332211         0011    0  0   0001111111100


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .   ...+.+...+.+.+.+..-+-...   -...+...++|+..+++++..+|++++ ||+|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll-LDEPt  174 (256)
T 1vpl_A          112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI-LDEPT  174 (256)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            0   012222111222233322111011   122355669999999999999999777 99998

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.77  E-value=3.9e-08  Score=82.21  Aligned_cols=122  Identities=16%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCC----CCHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----VPSEVTIKLL   89 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l   89 (182)
                      ..+.+|+++|.|||||||+++.|++.++     ...++.+++.............     ......    .....+...+
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~i-----fd~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEF-----FLPDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGG-----GCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccc-----cCCCCHHHHHHHHHHHHHHH
Confidence            5567999999999999999999998875     3455666654443221010000     000000    0011111222


Q ss_pred             ---HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEe---cCHHHHHHHHHhhh
Q 030176           90 ---QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD---CSEEEMERRILNRN  145 (182)
Q Consensus        90 ---~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld---~~~~~l~~R~~~R~  145 (182)
                         ...+....+..+|+|.......++..+...+......+++++   .+.+.+.+|+..+.
T Consensus       112 ~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~  173 (469)
T 1bif_A          112 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK  173 (469)
T ss_dssp             HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh
Confidence               333334556788899877777666666443321112355566   55777777776554

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.76  E-value=1.4e-08  Score=78.79  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=27.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|.||+|||||||++.|+.
T Consensus        25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           25 VSLQARAGDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            356778999999999999999999999993

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.75  E-value=8.5e-10  Score=88.95  Aligned_cols=114  Identities=18%  Similarity=0.226  Sum_probs=63.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHcCCh-----hhHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKSGSE-----NGTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~~~~-----~~~~~~~~~~~   76 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+.            .....+     ...+..+.+..
T Consensus        19 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~   95 (348)
T 3d31_A           19 LSLKVESGEYFVILGPTGAGKTLFLELIA---GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF   95 (348)
T ss_dssp             EEEEECTTCEEEEECCCTHHHHHHHHHHH---TSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred             eEEEEcCCCEEEEECCCCccHHHHHHHHH---cCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHH
Confidence            35677899999999999999999999999   65544444332111            110000     00011111000


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +   ...+.+   +.+.+.+..-.-...   -.......++|+..+++++..+|++++ ||+|+
T Consensus        96 ~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL-LDEP~  155 (348)
T 3d31_A           96 GMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL-LDEPL  155 (348)
T ss_dssp             HHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE-EESSS
T ss_pred             HHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence            0   001111   222333322111111   122344569999999999999998777 99998

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.75  E-value=9.2e-10  Score=88.95  Aligned_cols=117  Identities=16%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----------cCCh-----------hhHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----------SGSE-----------NGTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-----------~~~~-----------~~~~~~   71 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+...           ....           ......
T Consensus        24 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~  100 (353)
T 1oxx_K           24 VNINIENGERFGILGPSGAGKTTFMRIIA---GLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF  100 (353)
T ss_dssp             EEEEECTTCEEEEECSCHHHHHHHHHHHH---TSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHH
Confidence            35677899999999999999999999999   6554444433221100           0000           011222


Q ss_pred             HHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+..+   ...+.+...+.+.+.+..-+-...   -.......++|+..+++++..+|++++ ||+|+
T Consensus       101 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLL-LDEP~  168 (353)
T 1oxx_K          101 ENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL-LDEPF  168 (353)
T ss_dssp             HHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence            222222   122333333344444433211111   122344569999999999999999777 99998

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.75  E-value=3.5e-10  Score=84.42  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ++|+|+|++||||||+++.|++.++
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3799999999999999999999885

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.74  E-value=7.5e-09  Score=77.29  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=26.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..++.+++|+|++|||||||++.|+..+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46789999999999999999999998774

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.74  E-value=1.3e-09  Score=83.57  Aligned_cols=115  Identities=15%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH---------------HHHHHc--C---ChhhHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL---------------RAEIKS--G---SENGTMIQNMI   74 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~---------------~~~~~~--~---~~~~~~~~~~~   74 (182)
                      ++++.++.+++|.||+|||||||++.|+   |+...+.|++.               +.....  +   .....+..+.+
T Consensus        26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl  102 (240)
T 1ji0_A           26 DLKVPRGQIVTLIGANGAGKTTTLSAIA---GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL  102 (240)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHH
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHH
Confidence            5567899999999999999999999999   54333332221               110110  0   00111222222


Q ss_pred             HcCC--CCCH----HHHHHHHHHH-HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KEGK--IVPS----EVTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~~~--~~~~----~~~~~~l~~~-l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+.  ....    +.+.+++... ......... .......++|+..+++++..+|++++ ||+|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-~~~LSgGq~qrv~lAraL~~~p~lll-LDEPt  167 (240)
T 1ji0_A          103 MMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQL-GGTLSGGEQQMLAIGRALMSRPKLLM-MDEPS  167 (240)
T ss_dssp             HGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSB-SSSSCHHHHHHHHHHHHHTTCCSEEE-EECTT
T ss_pred             HHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCC-hhhCCHHHHHHHHHHHHHHcCCCEEE-EcCCc
Confidence            2211  1111    1222222222 112111111 23455669999999999999999777 99998

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.74  E-value=9.3e-10  Score=84.41  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH------------HcCC-----hhhHHHHHHHHcC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI------------KSGS-----ENGTMIQNMIKEG   77 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~------------~~~~-----~~~~~~~~~~~~~   77 (182)
                      ++++.+ .+++|.||+|||||||++.|+   |+...+.|++..+..            ....     .......+.+..+
T Consensus        19 sl~i~~-e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~   94 (240)
T 2onk_A           19 DFEMGR-DYCVLLGPTGAGKSVFLELIA---GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG   94 (240)
T ss_dssp             EEEECS-SEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred             EEEECC-EEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHH
Confidence            556778 999999999999999999999   654444443321110            0000     0111222222222


Q ss_pred             CC-CCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           78 KI-VPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        78 ~~-~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .. .......+.+.+.+..-+-..   .-.......++|+..+++++..+|++++ ||+|+
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll-LDEPt  154 (240)
T 2onk_A           95 LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL-LDEPL  154 (240)
T ss_dssp             CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE-EESTT
T ss_pred             HHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            11 111111223334443321111   1122345569999999999999999888 99998

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.72  E-value=4e-08  Score=77.82  Aligned_cols=28  Identities=18%  Similarity=0.341  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .++.+++|+|++|||||||++.|+..++
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            6778999999999999999999998776

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.71  E-value=5.1e-10  Score=91.54  Aligned_cols=118  Identities=14%  Similarity=0.229  Sum_probs=66.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~~~~----~~~~~~~~~~~   76 (182)
                      ++++.++.+++|.||+|||||||++.|+   |+.. +.|++..              ..+....+    ......+.+..
T Consensus        41 sl~i~~Ge~~~llGpsGsGKSTLLr~ia---Gl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~  116 (390)
T 3gd7_A           41 SFSISPGQRVGLLGRTGSGKSTLLSAFL---RLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDP  116 (390)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHH---TCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCT
T ss_pred             eEEEcCCCEEEEECCCCChHHHHHHHHh---CCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhh
Confidence            5567899999999999999999999999   6543 3333311              11110000    01122222221


Q ss_pred             CCCCCHHHHHHHHHHH-----HHhcC-C-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176           77 GKIVPSEVTIKLLQKA-----MEESG-N-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (182)
Q Consensus        77 ~~~~~~~~~~~~l~~~-----l~~~~-~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l  137 (182)
                      ......+.+.+++...     +.+.. . ...+-+.   ....++|+..+++++..+|++++ ||+|+..+
T Consensus       117 ~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL-LDEPts~L  186 (390)
T 3gd7_A          117 NAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL-LDEPSAHL  186 (390)
T ss_dssp             TCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE-EESHHHHS
T ss_pred             ccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE-EeCCccCC
Confidence            2223344444443321     11111 0 1111111   45569999999999999998777 99999544

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.71  E-value=1.7e-08  Score=75.39  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +++.+|+|+||+||||||+++.|++.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            5688999999999999999999998874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.71  E-value=4e-10  Score=91.62  Aligned_cols=117  Identities=19%  Similarity=0.226  Sum_probs=65.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------------CChh-----------hHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------------GSEN-----------GTMI   70 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------------~~~~-----------~~~~   70 (182)
                      -++++.++.+++|.||+|||||||++.|+   |+...+.|++..+....            ....           ..+.
T Consensus        22 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv   98 (372)
T 1g29_1           22 MSLEVKDGEFMILLGPSGCGKTTTLRMIA---GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV   98 (372)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCH
T ss_pred             eEEEEcCCCEEEEECCCCcHHHHHHHHHH---cCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCH
Confidence            35567889999999999999999999999   65544444332211000            0000           0111


Q ss_pred             HHHHHc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           71 QNMIKE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        71 ~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+..   ....+.+...+.+.+.+..-.-...   -.......++|+..+++++..+|++++ ||+|+
T Consensus        99 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL-LDEP~  167 (372)
T 1g29_1           99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL-MDEPL  167 (372)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE-EECTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE-ECCCC
Confidence            111110   0112322222233333332111111   122345569999999999999998777 99998

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.71  E-value=2.1e-07  Score=68.57  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .|+|+||+|||||||++.|.+.+.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            488999999999999999988763

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.71  E-value=9.9e-10  Score=85.03  Aligned_cols=29  Identities=34%  Similarity=0.539  Sum_probs=26.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++++.++.+++|.||+|||||||++.|+.
T Consensus        27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           27 SISVNKGDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             CCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence            56678999999999999999999999993

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.70  E-value=3.5e-09  Score=82.95  Aligned_cols=29  Identities=21%  Similarity=0.189  Sum_probs=26.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++.+.++.+++|+||+|||||||++.|+.
T Consensus        41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           41 SWQIAKGDKWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             EEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             eEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            55678999999999999999999999993

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.70  E-value=2.7e-09  Score=85.39  Aligned_cols=36  Identities=19%  Similarity=0.526  Sum_probs=32.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      ++++|+|+||+|||||||+..||++++..+++.|.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            457999999999999999999999999888887665

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.67  E-value=6.1e-08  Score=77.75  Aligned_cols=30  Identities=17%  Similarity=0.072  Sum_probs=26.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHH-HHHHHHhCC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQC-ANIVEHFGY   47 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla-~~La~~lg~   47 (182)
                      ..++.+|+|.|+-||||||++ +.|++.++.
T Consensus         9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A            9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            356789999999999999999 999988763

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.66  E-value=3.6e-09  Score=82.30  Aligned_cols=116  Identities=20%  Similarity=0.218  Sum_probs=63.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------HH---HH--cCCh----hhHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------AE---IK--SGSE----NGTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------~~---~~--~~~~----~~~~~~~~~~~   76 (182)
                      -++.+.++.+++|+||+|||||||++.|+   |+...+.|++..        ..   ..  .+..    ...+..+.+..
T Consensus        26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~---Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~  102 (266)
T 2yz2_A           26 VSLVINEGECLLVAGNTGSGKSTLLQIVA---GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAF  102 (266)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHH
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHH
Confidence            35678899999999999999999999999   543332222211        10   11  0110    01122222222


Q ss_pred             CCC--CC----HHHHHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GKI--VP----SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~~--~~----~~~~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +..  .+    .+.+.+++...-..  ...+ .-.......++|+..+++++..+|+++| ||+|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~lll-LDEPt  166 (266)
T 2yz2_A          103 AVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGEKRRVAIASVIVHEPDILI-LDEPL  166 (266)
T ss_dssp             TTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHHHHHHHHHHHHHcCCCEEE-EcCcc
Confidence            110  11    22223333322110  0000 0122355669999999999999999887 99998

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.66  E-value=5.4e-09  Score=80.73  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=64.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-HHHH---cC--ChhhHHHHHHHHcCC----C---CC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-AEIK---SG--SENGTMIQNMIKEGK----I---VP   81 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-~~~~---~~--~~~~~~~~~~~~~~~----~---~~   81 (182)
                      ++.+.++.+++|.||+|||||||++.|+   |+...+.|++.. ....   ..  ........+.+..+.    .   .+
T Consensus        25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~  101 (253)
T 2nq2_C           25 NFDLNKGDILAVLGQNGCGKSTLLDLLL---GIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP  101 (253)
T ss_dssp             EEEEETTCEEEEECCSSSSHHHHHHHHT---TSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCC
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCC
Confidence            5667899999999999999999999999   654444444320 0000   00  000111222221110    0   11


Q ss_pred             HHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           82 SEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        82 ~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .....+.+.+.+..-+-...   -.......++|+..+++++..+|+++| ||+|+
T Consensus       102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll-LDEPt  156 (253)
T 2nq2_C          102 KSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLIL-LDEPT  156 (253)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEE-ESSSS
T ss_pred             CHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            11112223333332111010   122355669999999999988999877 99998

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.65  E-value=1.3e-09  Score=84.09  Aligned_cols=114  Identities=16%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHc---CC--hhhHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKS---GS--ENGTMIQNMIK   75 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~---~~--~~~~~~~~~~~   75 (182)
                      ++.+.++.+++|.||+|||||||++.|+   |+...+ |++..              .....   ..  .......+.+.
T Consensus        20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~---Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~   95 (249)
T 2qi9_C           20 SGEVRAGEILHLVGPNGAGKSTLLARMA---GMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT   95 (249)
T ss_dssp             EEEEETTCEEEEECCTTSSHHHHHHHHT---TSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHH
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHH
Confidence            5667899999999999999999999999   554333 33211              11110   00  01112333333


Q ss_pred             cCCC--CCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-------EEEEEecCH
Q 030176           76 EGKI--VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-------FVLFFDCSE  134 (182)
Q Consensus        76 ~~~~--~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~-------~vI~ld~~~  134 (182)
                      .+..  ...+.+.+++.........+.. .......++|+..+++++..+|+       +++ ||+|+
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll-LDEPt  161 (249)
T 2qi9_C           96 LHQHDKTRTELLNDVAGALALDDKLGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL-LDEPM  161 (249)
T ss_dssp             TTCSSTTCHHHHHHHHHHTTCGGGTTSB-GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE-ESSTT
T ss_pred             HhhccCCcHHHHHHHHHHcCChhHhcCC-hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE-EECCc
Confidence            2211  1223333333322111100111 23355669999999999888888       777 99998

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.65  E-value=6e-09  Score=82.62  Aligned_cols=116  Identities=20%  Similarity=0.277  Sum_probs=65.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      ++.++++.+++|+||+|||||||++.|+   |+...+.|.+              ++..+....+    ...++.+.+..
T Consensus        74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~  150 (306)
T 3nh6_A           74 SFTVMPGQTLALVGPSGAGKSTILRLLF---RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRY  150 (306)
T ss_dssp             EEEECTTCEEEEESSSCHHHHHHHHHHT---TSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHT
T ss_pred             eEEEcCCCEEEEECCCCchHHHHHHHHH---cCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHh
Confidence            4567899999999999999999999998   4433332222              1111111000    11122232333


Q ss_pred             CC-CCCHHHHHHHHHH-----HHHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK-IVPSEVTIKLLQK-----AMEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~-~~~~~~~~~~l~~-----~l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +. ....+.+.+.++.     .+.. +.+-...++.    ....++|+..+++++..+|+++| ||+|+
T Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLl-LDEPt  218 (306)
T 3nh6_A          151 GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIIL-LDEAT  218 (306)
T ss_dssp             TSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE-EECCS
T ss_pred             hcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence            32 2333333333322     1211 1111122332    34559999999999988898887 99997

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.65  E-value=4.2e-08  Score=74.25  Aligned_cols=32  Identities=13%  Similarity=0.235  Sum_probs=21.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHH-HHh
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIV-EHF   45 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La-~~l   45 (182)
                      .++...++.+++|+||+|||||||++.|+ ..+
T Consensus        20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             --CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            35567889999999999999999999999 765

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.64  E-value=3.7e-09  Score=81.37  Aligned_cols=117  Identities=21%  Similarity=0.277  Sum_probs=64.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~   75 (182)
                      -++.+.++.+++|+||+|||||||++.|+   |+...+.|++              ++.......+    ...+..+.+.
T Consensus        28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~  104 (247)
T 2ff7_A           28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQ---RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIS  104 (247)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHh
Confidence            35677899999999999999999999999   5433322222              1111111000    1112233232


Q ss_pred             cCC-CCCHHHHHHHHHHH-----HHhcC-CCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EGK-IVPSEVTIKLLQKA-----MEESG-NDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~~-~~~~~~~~~~l~~~-----l~~~~-~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+. ....+.+.+++...     +.... +-...++    .....++|+..+++++..+|+++| ||+|+
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lll-LDEPt  173 (247)
T 2ff7_A          105 LANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI-FDEAT  173 (247)
T ss_dssp             TTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEE-ECCCC
T ss_pred             ccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence            221 12333333333221     11110 0000111    244559999999999999998777 99997

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.63  E-value=4.4e-09  Score=80.69  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH--------------Hc--CC-h-hhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI--------------KS--GS-E-NGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~--------------~~--~~-~-~~~~~~~~~~   75 (182)
                      -++.+.++.+++|+||+|||||||++.|+   |+...+.|.+..+..              ..  +. . ...+..+.+.
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~   97 (243)
T 1mv5_A           21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLE---RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT   97 (243)
T ss_dssp             EEEEECTTEEEEEECCTTSSHHHHHHHHT---TSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHh
Confidence            35678899999999999999999999999   544444443322110              00  00 0 0012222222


Q ss_pred             cC--CCCCHHHHHHHHHHHHHhcC------CCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EG--KIVPSEVTIKLLQKAMEESG------NDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~--~~~~~~~~~~~l~~~l~~~~------~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+  .....+.+.+++.......-      +-...++    ..+..++|+..+++++..+|++++ ||+|+
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lll-LDEPt  167 (243)
T 1mv5_A           98 YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM-LDEAT  167 (243)
T ss_dssp             SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE-EECCS
T ss_pred             hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence            22  11233333333333221110      0011122    244559999999999988998777 99997

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.63  E-value=1e-08  Score=79.01  Aligned_cols=28  Identities=29%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ++.+.++.+++|.||+|||||||++.|+
T Consensus        23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~   50 (250)
T 2d2e_A           23 NLVVPKGEVHALMGPNGAGKSTLGKILA   50 (250)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            5667899999999999999999999999

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.62  E-value=5.2e-08  Score=83.86  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      .+.++.+++|.||+|||||||++.|+   |+...+.|.+
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~---Gll~P~~G~i  134 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILA---GKQKPNLGRF  134 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHH---TSSCCCTTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHh---cCCCCCCceE
Confidence            45788999999999999999999999   6655555554

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.62  E-value=1.9e-07  Score=75.67  Aligned_cols=29  Identities=24%  Similarity=0.223  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..++.+|+|.|+-||||||+++.|++.+.
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35677899999999999999999998774

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.62  E-value=4.2e-09  Score=80.58  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=63.3

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcCCCCCHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEGKIVPSEVTIK   87 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (182)
                      -++.+.++.+++|+||+|||||||++.|+   |+...+.|.+..+. ..     .... ..+..+.+..+.....+...+
T Consensus        24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~i~~v~Q~~~~~-~~tv~enl~~~~~~~~~~~~~   99 (237)
T 2cbz_A           24 ITFSIPEGALVAVVGQVGCGKSSLLSALL---AEMDKVEGHVAIKGSVAYVPQQAWIQ-NDSLRENILFGCQLEEPYYRS   99 (237)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHT---TCSEEEEEEEEECSCEEEECSSCCCC-SEEHHHHHHTTSCCCTTHHHH
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEEEEEcCCCcCC-CcCHHHHhhCccccCHHHHHH
Confidence            35677899999999999999999999999   66544444432110 00     0000 111222222221111111111


Q ss_pred             HHH-----HHHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           88 LLQ-----KAMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        88 ~l~-----~~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.     +.+.. ..+....++    .....++|+..+++++..+|+++| ||+|+
T Consensus       100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll-LDEPt  155 (237)
T 2cbz_A          100 VIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL-FDDPL  155 (237)
T ss_dssp             HHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE-EESTT
T ss_pred             HHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCcc
Confidence            111     11110 000001122    344569999999999988998777 99998

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.61  E-value=1.8e-08  Score=86.42  Aligned_cols=116  Identities=17%  Similarity=0.242  Sum_probs=65.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++.+++|+||+|||||||++.|+..+   ..+.|.+.              +.......+    ...+..+.+..
T Consensus       363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~  439 (582)
T 3b5x_A          363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY---DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAY  439 (582)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhc
Confidence            5567899999999999999999999999443   23322221              111110000    11233333333


Q ss_pred             CC--CCCHHHHHHHHHHH-----HHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK--IVPSEVTIKLLQKA-----MEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~--~~~~~~~~~~l~~~-----l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.  ...++.+.+.++..     +.. +++-...++    .....++|+..+++++..+|++++ ||+|+
T Consensus       440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill-lDEpt  508 (582)
T 3b5x_A          440 AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI-LDEAT  508 (582)
T ss_pred             cCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence            32  23344444443322     111 111111121    244569999999999988998887 99998

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.60  E-value=4.4e-08  Score=76.16  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=26.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++.+.++.+++|+||+|||||||++.|+.
T Consensus        40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           40 SLDVHPGEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            56678999999999999999999999993

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.59  E-value=3.6e-09  Score=82.16  Aligned_cols=114  Identities=16%  Similarity=0.155  Sum_probs=61.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----cCChhh----------HHHHHHHHcC--
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----SGSENG----------TMIQNMIKEG--   77 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-----~~~~~~----------~~~~~~~~~~--   77 (182)
                      ++.+. +.+++|.||+|||||||++.|+   |+. .+.|.+......     .....+          .+..+.+...  
T Consensus        25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~---Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~   99 (263)
T 2pjz_A           25 NLEVN-GEKVIILGPNGSGKTTLLRAIS---GLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEE   99 (263)
T ss_dssp             EEEEC-SSEEEEECCTTSSHHHHHHHHT---TSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHH
T ss_pred             eEEEC-CEEEEEECCCCCCHHHHHHHHh---CCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhh
Confidence            56678 9999999999999999999999   655 444443221100     000011          0111111000  


Q ss_pred             -CCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           78 -KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        78 -~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       .....+.+.+++...-........-.......++|+..+++++..+|++++ ||+|+
T Consensus       100 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll-LDEPt  156 (263)
T 2pjz_A          100 LKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG-LDEPF  156 (263)
T ss_dssp             HTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE-EECTT
T ss_pred             hcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence             011222222232222110000000012345569999999999988998777 99998

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.58  E-value=1.8e-09  Score=82.22  Aligned_cols=115  Identities=17%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcCCCCCHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEGKIVPSEVTIKL   88 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (182)
                      ++.+.++.+++|+||+|||||||++.|+   |+...+.|.+.... ..     ...... ...+.+..+.........+.
T Consensus        28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~  103 (229)
T 2pze_A           28 NFKIERGQLLAVAGSTGAGKTSLLMMIM---GELEPSEGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSV  103 (229)
T ss_dssp             EEEEETTCEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHH
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCcCCccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHH
Confidence            5667899999999999999999999999   54433333321110 00     000011 22222222222222111111


Q ss_pred             HH-----HHHHhcC-CCcEEE----eCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           89 LQ-----KAMEESG-NDKFLI----DGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        89 l~-----~~l~~~~-~~~~il----dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.     +.+.... .....+    ......++|+..+++++..+|++++ ||+|+
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lll-LDEPt  158 (229)
T 2pze_A          104 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL-LDSPF  158 (229)
T ss_dssp             HHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEE-EESTT
T ss_pred             HHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EECcc
Confidence            11     1111100 000011    2345569999999999988998777 99998

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.56  E-value=2.1e-07  Score=74.35  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +.+.+|+|.|+-||||||+++.|++.+.
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3467899999999999999999998774

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.56  E-value=1.2e-08  Score=79.55  Aligned_cols=116  Identities=17%  Similarity=0.239  Sum_probs=63.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      ++.+.++.+++|+||+|||||||++.|+   |+...+.|.+              ++..+....+    ...++.+.+..
T Consensus        39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~  115 (271)
T 2ixe_A           39 TFTLYPGKVTALVGPNGSGKSTVAALLQ---NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAY  115 (271)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHT
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhh
Confidence            5667899999999999999999999999   5433222222              1111111000    01123333332


Q ss_pred             CC-CCCH-HHHHHH-----HHHHHHhcC-CCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK-IVPS-EVTIKL-----LQKAMEESG-NDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~-~~~~-~~~~~~-----l~~~l~~~~-~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +. .... +.....     +.+.+..-. +-...++    .+...++|+..+++++..+|+++| ||+|+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll-LDEPt  184 (271)
T 2ixe_A          116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI-LDNAT  184 (271)
T ss_dssp             TCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             hcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence            21 1111 111111     122222210 0001122    244569999999999999998877 99998

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.54  E-value=3.3e-07  Score=78.01  Aligned_cols=116  Identities=14%  Similarity=0.074  Sum_probs=52.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg------~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   90 (182)
                      ...++.+++|+|++|||||||++.|++.++      +..++.+++... .........  .+....     ...+...++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~--~~r~~~-----~r~i~~v~q  436 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSK--AHRDVN-----VRRIGFVAS  436 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSH--HHHHHH-----HHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCH--HHHHHH-----HHHHHHHHH
Confidence            356789999999999999999999999884      334676655322 111000000  000000     001111222


Q ss_pred             HHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHH
Q 030176           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL  142 (182)
Q Consensus        91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~  142 (182)
                      . +.. ....++..+.......+......+.. ...++|||++|.+++.+|..
T Consensus       437 ~-l~~-~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          437 E-ITK-NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             H-HHH-TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------
T ss_pred             H-HHh-cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc
Confidence            2 211 23344444332223333333333311 13479999999999999975

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.51  E-value=3e-08  Score=78.02  Aligned_cols=114  Identities=17%  Similarity=0.204  Sum_probs=63.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcCCCCCHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEGKIVPSEVTIKL   88 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (182)
                      ++.+.++.+++|+|++|||||||++.|+   |+...+.|.+..+. ..     ...... ...+.+. +.........+.
T Consensus        58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~-tv~enl~-~~~~~~~~~~~~  132 (290)
T 2bbs_A           58 NFKIERGQLLAVAGSTGAGKTSLLMMIM---GELEPSEGKIKHSGRISFCSQNSWIMPG-TIKENII-GVSYDEYRYRSV  132 (290)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHT---TSSCEEEEEEECCSCEEEECSSCCCCSS-BHHHHHH-TTCCCHHHHHHH
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEEEEEeCCCccCcc-cHHHHhh-CcccchHHHHHH
Confidence            4567899999999999999999999999   65444444332210 00     000011 2222232 222222211111


Q ss_pred             HH-----HHHHhcC-CCc-E---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           89 LQ-----KAMEESG-NDK-F---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        89 l~-----~~l~~~~-~~~-~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.     +.+.... ... .   -...+...++|+..+++++..+|++++ ||+|+
T Consensus       133 ~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll-LDEPt  187 (290)
T 2bbs_A          133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL-LDSPF  187 (290)
T ss_dssp             HHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEE-EESTT
T ss_pred             HHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEE-EECCc
Confidence            11     1121110 000 0   012355669999999999988998777 99998

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.49  E-value=1.3e-07  Score=80.43  Aligned_cols=36  Identities=36%  Similarity=0.352  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      .+.++.+++|+||+|||||||++.|+   |....+.|.+
T Consensus        21 ~~~~Gei~gLiGpNGaGKSTLlkiL~---Gl~~p~~G~i   56 (538)
T 3ozx_A           21 TPKNNTILGVLGKNGVGKTTVLKILA---GEIIPNFGDP   56 (538)
T ss_dssp             CCCTTEEEEEECCTTSSHHHHHHHHT---TSSCCCTTCT
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCCcc
Confidence            45788999999999999999999999   6555554443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.45  E-value=1.2e-08  Score=86.64  Aligned_cols=112  Identities=14%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------cCChhhHHHHHHHHc--CCC--CCHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-------SGSENGTMIQNMIKE--GKI--VPSEVTI   86 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-------~~~~~~~~~~~~~~~--~~~--~~~~~~~   86 (182)
                      +.++.+++|+|++|||||||++.|+   |+...+.|.+......       ..........+.+..  ...  .....+.
T Consensus       291 i~~Gei~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~  367 (538)
T 3ozx_A          291 AKEGEIIGILGPNGIGKTTFARILV---GEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE  367 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHT---TSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence            4688999999999999999999999   6544444443211000       000000111111111  010  0111111


Q ss_pred             HHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        87 ~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +++........... -+......++|+..+++++..+|+++| ||+|+
T Consensus       368 ~~l~~~~l~~~~~~-~~~~LSGGq~QRv~iAraL~~~p~lLl-LDEPT  413 (538)
T 3ozx_A          368 EVTKRLNLHRLLES-NVNDLSGGELQKLYIAATLAKEADLYV-LDQPS  413 (538)
T ss_dssp             HTTTTTTGGGCTTS-BGGGCCHHHHHHHHHHHHHHSCCSEEE-EESTT
T ss_pred             HHHHHcCCHHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            11111111100000 122344569999999999999999887 99998

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.42  E-value=6.1e-08  Score=83.20  Aligned_cols=116  Identities=20%  Similarity=0.272  Sum_probs=65.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++.+++|+||+|||||||++.|+..+   ..+.|++              ++.......+    ...++.+.+..
T Consensus       363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~---~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~  439 (587)
T 3qf4_A          363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLI---DPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKW  439 (587)
T ss_dssp             EEEECTTCEEEEECSSSSSHHHHHHTTTTSS---CCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTT
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---cCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhc
Confidence            4567889999999999999999999998433   2222222              1222211000    11123333332


Q ss_pred             CC-CCCHHHHHHHHHH-----HHHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK-IVPSEVTIKLLQK-----AMEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~-~~~~~~~~~~l~~-----~l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +. ...++.+.+.++.     .+.. +.+-...++.    ....++|+..+++++..+|+++| ||+|+
T Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ill-lDEpt  507 (587)
T 3qf4_A          440 GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLI-LDDCT  507 (587)
T ss_dssp             TCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEE-EESCC
T ss_pred             cCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence            32 2334433333322     2222 1121222332    34459999999999988999888 99997

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.40  E-value=1.7e-08  Score=86.55  Aligned_cols=116  Identities=16%  Similarity=0.272  Sum_probs=65.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++.+++|+||+||||||+++.|+   |+...+.|++              +++......+    ...+..+.+..
T Consensus       361 sl~i~~G~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~  437 (578)
T 4a82_A          361 NLSIEKGETVAFVGMSGGGKSTLINLIP---RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL  437 (578)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHTTTT---TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGG
T ss_pred             EEEECCCCEEEEECCCCChHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhc
Confidence            4567899999999999999999999998   4333322222              1111110000    11123333332


Q ss_pred             CC-CCCHHHHHHHHHHH-----HHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK-IVPSEVTIKLLQKA-----MEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~-~~~~~~~~~~l~~~-----l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +. ...++.+.+.++..     +.. +.+....+.    .....++|+..+++++..+|++++ ||+|+
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ill-lDEpt  505 (578)
T 4a82_A          438 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI-LDEAT  505 (578)
T ss_dssp             GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEE-EESTT
T ss_pred             CCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence            22 23344444443321     211 111111122    234569999999999988999887 99997

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.40  E-value=1.3e-06  Score=81.24  Aligned_cols=119  Identities=18%  Similarity=0.294  Sum_probs=70.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEecH---H----HHHHHHHHcCCh----hhHHHHHHHHcCC-
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLSA---G----DLLRAEIKSGSE----NGTMIQNMIKEGK-   78 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~~~---~----di~~~~~~~~~~----~~~~~~~~~~~~~-   78 (182)
                      ++.++++..++|+|++|||||||++.|...+..    ..++.   .    +.++..+....+    ...++.+-+.-+. 
T Consensus       438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~  517 (1321)
T 4f4c_A          438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE  517 (1321)
T ss_dssp             EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred             EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc
Confidence            556789999999999999999999999855421    11111   0    112222221111    1122222233333 


Q ss_pred             CCCHHHHHHHHHHH-----HHh-cCCCcEEEe-C---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           79 IVPSEVTIKLLQKA-----MEE-SGNDKFLID-G---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        79 ~~~~~~~~~~l~~~-----l~~-~~~~~~ild-g---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...++.+.+.++..     +.. +++....+. +   ....++|+..++|++-.+|+++| ||+++
T Consensus       518 ~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili-LDE~t  582 (1321)
T 4f4c_A          518 GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL-LDEAT  582 (1321)
T ss_dssp             TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEE-Eeccc
Confidence            35566666655432     222 233233332 1   34559999999999989999888 99986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.40  E-value=7e-08  Score=89.67  Aligned_cols=116  Identities=20%  Similarity=0.252  Sum_probs=67.6

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++..++|+|++|||||||++.|.+-+   .++.|.+              ++..+...++    ..-++++-+.-
T Consensus      1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~---~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~ 1175 (1321)
T 4f4c_A         1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFY---DTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIY 1175 (1321)
T ss_dssp             EEEECTTCEEEEECSTTSSTTSHHHHHTTSS---CCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSS
T ss_pred             eEEECCCCEEEEECCCCChHHHHHHHHhcCc---cCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhc
Confidence            5567899999999999999999999998443   2322222              1111111010    11112221211


Q ss_pred             C---CCCCHHHHHHHHHHH-----HHh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKA-----MEE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~-----l~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +   ....++.+.+.++..     +.. ++ .+..|-++   +...++|+.+++|++-.+|.++| ||+++
T Consensus      1176 gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILi-LDEaT 1245 (1321)
T 4f4c_A         1176 GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL-LDEAT 1245 (1321)
T ss_dssp             SSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEE-EESCC
T ss_pred             cCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEE-EeCcc
Confidence            2   234566666555432     222 22 23332222   44569999999999988898877 99985

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.39  E-value=3e-08  Score=84.97  Aligned_cols=116  Identities=16%  Similarity=0.234  Sum_probs=65.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHc--CC--hhhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKS--GS--ENGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~--~~--~~~~~~~~~~~~   76 (182)
                      +++++++.+++|+||+|||||||++.|+..+   ..+.|++              ++.....  +.  -...+..+.+..
T Consensus       363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~  439 (582)
T 3b60_A          363 NLKIPAGKTVALVGRSGSGKSTIASLITRFY---DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY  439 (582)
T ss_dssp             EEEECTTCEEEEEECTTSSHHHHHHHHTTTT---CCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHT
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc---CCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhc
Confidence            5567899999999999999999999999443   2222221              1111110  00  011133333333


Q ss_pred             CC--CCCHHHHHHHHHH-----HHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK--IVPSEVTIKLLQK-----AMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~--~~~~~~~~~~l~~-----~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.  ...++.+.+.++.     .+.+ +++-...++    .....++|+..+++++..+|++++ ||+|+
T Consensus       440 ~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill-lDEpt  508 (582)
T 3b60_A          440 ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI-LDEAT  508 (582)
T ss_dssp             TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE-EETTT
T ss_pred             cCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE-EECcc
Confidence            32  2344444444332     1211 111111121    234569999999999988898877 99997

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.39  E-value=3.9e-08  Score=84.69  Aligned_cols=112  Identities=18%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcC---CCCCHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEG---KIVPSEVTIKL   88 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~   88 (182)
                      +.++.+++|.||+|||||||++.|+   |+...+.|.+.... ..     .......+..+.+...   .....+.+.++
T Consensus       379 v~~Gei~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~  455 (607)
T 3bk7_A          379 IRKGEVIGIVGPNGIGKTTFVKMLA---GVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL  455 (607)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH---TSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence            4678999999999999999999999   55444444432100 00     0000000111111000   00011222223


Q ss_pred             HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        89 l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +........... -+......++|+..+++++..+|+++| ||+|+
T Consensus       456 l~~~~l~~~~~~-~~~~LSGGe~QRv~iAraL~~~p~lLl-LDEPt  499 (607)
T 3bk7_A          456 LKPLGIIDLYDR-NVEDLSGGELQRVAIAATLLRDADIYL-LDEPS  499 (607)
T ss_dssp             HHHHTCTTTTTS-BGGGCCHHHHHHHHHHHHHTSCCSEEE-EECTT
T ss_pred             HHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEE-EeCCc
Confidence            322211111011 122345569999999999999999877 99998

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.37  E-value=4.7e-07  Score=76.91  Aligned_cols=35  Identities=29%  Similarity=0.320  Sum_probs=29.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d   54 (182)
                      .+.++.+++|+|++|||||||++.|+   |....+.|.
T Consensus        43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~---Gl~~p~~G~   77 (538)
T 1yqt_A           43 VVKEGMVVGIVGPNGTGKSTAVKILA---GQLIPNLCG   77 (538)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHH---TSSCCCTTT
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCc
Confidence            46789999999999999999999999   655555444

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.36  E-value=2.2e-07  Score=68.59  Aligned_cols=29  Identities=31%  Similarity=0.397  Sum_probs=25.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.+++.+|+|+|++||||||+++.|++.+
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45678899999999999999999999776

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.35  E-value=1.8e-08  Score=86.70  Aligned_cols=116  Identities=17%  Similarity=0.258  Sum_probs=63.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~   76 (182)
                      +++++++.+++|+||+|||||||++.|+   |+...+.|++              ++.......+    ...++.+.+..
T Consensus       375 sl~i~~G~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~  451 (598)
T 3qf4_B          375 TFHIKPGQKVALVGPTGSGKTTIVNLLM---RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY  451 (598)
T ss_dssp             EEECCTTCEEEEECCTTSSTTHHHHHHT---TSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHS
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHh---cCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhc
Confidence            4567899999999999999999999998   4333322222              1222111000    11122232332


Q ss_pred             CC-CCCHHHHHHHHH-----HHHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK-IVPSEVTIKLLQ-----KAMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~-~~~~~~~~~~l~-----~~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +. ...++.+.+.++     +.+.. +.+....+.    .....++|+..+++++..+|+++| ||+|+
T Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ill-lDEpt  519 (598)
T 3qf4_B          452 GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI-LDEAT  519 (598)
T ss_dssp             SSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEE-ECCCC
T ss_pred             CCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence            22 122233333221     11111 111111111    244569999999999988999887 99997

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.34  E-value=1e-07  Score=82.09  Aligned_cols=110  Identities=15%  Similarity=0.238  Sum_probs=57.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHH-H--cCCCCCHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMI-K--EGKIVPSEVTIKLLQ   90 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~   90 (182)
                      ++.+++|+|++|||||||++.|+   |+...+.|..+... ..     ..........+.+ .  .+.....+...+++.
T Consensus       377 ~GEiv~iiG~NGsGKSTLlk~l~---Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~  453 (608)
T 3j16_B          377 DSEILVMMGENGTGKTTLIKLLA---GALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVK  453 (608)
T ss_dssp             TTCEEEEESCTTSSHHHHHHHHH---TSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHH
T ss_pred             cceEEEEECCCCCcHHHHHHHHh---cCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHH
Confidence            34789999999999999999999   55444433210000 00     0000000011111 1  111122233333333


Q ss_pred             HHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ........+. -+......++|+..+++++..+|++++ ||+|+
T Consensus       454 ~l~l~~~~~~-~~~~LSGGqkQRv~iAraL~~~p~lLl-LDEPT  495 (608)
T 3j16_B          454 PLRIDDIIDQ-EVQHLSGGELQRVAIVLALGIPADIYL-IDEPS  495 (608)
T ss_dssp             HHTSTTTSSS-BSSSCCHHHHHHHHHHHHTTSCCSEEE-ECCTT
T ss_pred             HcCChhhhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEE-EECCC
Confidence            3221111011 122344569999999999999999888 99998

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.29  E-value=6e-07  Score=77.29  Aligned_cols=35  Identities=29%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d   54 (182)
                      .+.++.+++|+|++|||||||++.|+   |....+.|.
T Consensus       113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~---Gll~p~~G~  147 (607)
T 3bk7_A          113 IVKDGMVVGIVGPNGTGKTTAVKILA---GQLIPNLCE  147 (607)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHT---TSSCCCTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHh---CCCCCCCCc
Confidence            46789999999999999999999999   655555444

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.27  E-value=5.6e-07  Score=65.51  Aligned_cols=28  Identities=14%  Similarity=0.310  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .++.+++|+||+|||||||++.|++.+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4678999999999999999999998763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.27  E-value=5.4e-08  Score=82.69  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH--cC---ChhhHHHHHHHHcC---CCCCHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK--SG---SENGTMIQNMIKEG---KIVPSEVTIKL   88 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~--~~---~~~~~~~~~~~~~~---~~~~~~~~~~~   88 (182)
                      +.++.+++|+|++|||||||++.|+   |....+.|.+.... ..  .+   .....+..+.+...   .....+    .
T Consensus       309 i~~Ge~~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~----~  381 (538)
T 1yqt_A          309 IKKGEVIGIVGPNGIGKTTFVKMLA---GVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNF----Y  381 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH---TSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHH----H
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHH----H
Confidence            3678999999999999999999999   54444433332100 00  00   00000001110000   000011    1


Q ss_pred             HHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           89 LQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        89 l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+.+..-.-...   -+......++|+..+++++..+|+++| ||+|+
T Consensus       382 ~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLl-LDEPt  429 (538)
T 1yqt_A          382 KTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYL-LDEPS  429 (538)
T ss_dssp             HHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE-EECTT
T ss_pred             HHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE-EeCCc
Confidence            1111111110000   011234459999999999999998877 99998

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.23  E-value=4.6e-07  Score=72.15  Aligned_cols=35  Identities=17%  Similarity=0.411  Sum_probs=31.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      +.+|+|+||+|||||||++.|++.++..+++.|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            46899999999999999999999999888887654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.20  E-value=7.3e-07  Score=67.02  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=24.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +-++.++++.+++|+||+|||||||++.|+..+
T Consensus        15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            346677889999999999999999999999765

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.18  E-value=1.2e-06  Score=65.02  Aligned_cols=32  Identities=9%  Similarity=0.263  Sum_probs=26.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+.+.++.+|+|+||+|||||||++.|.+.+.
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34456788999999999999999999998764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.18  E-value=1.3e-06  Score=62.53  Aligned_cols=31  Identities=23%  Similarity=0.444  Sum_probs=28.1

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+.++.+++|.||+|||||||++.|+..+
T Consensus        27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            5567899999999999999999999999766

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.17  E-value=4e-07  Score=84.40  Aligned_cols=115  Identities=21%  Similarity=0.251  Sum_probs=64.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCC-----hhhHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGS-----ENGTMIQNMIK   75 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~-----~~~~~~~~~~~   75 (182)
                      +++++++.+++|+|++|||||||++.|...+   ..+.|.+              ++..+....     -.+ ++.+-+.
T Consensus       410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~---~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~  485 (1284)
T 3g5u_A          410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLY---DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIR  485 (1284)
T ss_dssp             EEEECTTCEEEEECCSSSSHHHHHHHTTTSS---CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHH
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHh
Confidence            4567889999999999999999999998444   2222221              122221100     012 2222222


Q ss_pred             cC-CCCCHHHHHHHHHH-----HHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           76 EG-KIVPSEVTIKLLQK-----AMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        76 ~~-~~~~~~~~~~~l~~-----~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+ ....++.+.+.++.     .+.. +.+....+.    .....++|+..+++++..+|+++| ||+|+
T Consensus       486 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ili-LDEpt  554 (1284)
T 3g5u_A          486 YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL-LDEAT  554 (1284)
T ss_dssp             HHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEE-EESTT
T ss_pred             cCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence            22 23444444443332     1222 111111121    234559999999999988898888 99997

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.17  E-value=6.2e-07  Score=71.86  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      +.+|+|+||+|||||||++.|++.++..+++.|++
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            36899999999999999999999999877777665

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.16  E-value=1.7e-06  Score=66.24  Aligned_cols=40  Identities=18%  Similarity=0.342  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~   61 (182)
                      .+|+|+|++||||||+++.|.+.+|+.++..++.+++...
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            5799999999999999999988899999998888776654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.15  E-value=3e-06  Score=61.37  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=33.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----C--CcEecHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA   58 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g--~~~~~~~di~~~   58 (182)
                      ++...++..++|+||+||||||+++.++..+    |  ..+++..+++..
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~   81 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR   81 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            3445668899999999999999999998776    4  345566555443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.14  E-value=1.2e-06  Score=64.92  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +++.+++|+||+|||||||++.|...+
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            356789999999999999999998765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.13  E-value=3.7e-07  Score=84.66  Aligned_cols=116  Identities=19%  Similarity=0.292  Sum_probs=64.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH----------HHHc------CC--hhhHHHHHHHHc
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA----------EIKS------GS--ENGTMIQNMIKE   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~----------~~~~------~~--~~~~~~~~~~~~   76 (182)
                      +++++++.+++|+|++|||||||++.|.   |+...+.|.+..+          ....      +.  -...++.+-+..
T Consensus      1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~ 1129 (1284)
T 3g5u_A         1053 SLEVKKGQTLALVGSSGCGKSTVVQLLE---RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129 (1284)
T ss_dssp             CEEECSSSEEEEECSSSTTHHHHHHHHT---TSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTC
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh---cCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhc
Confidence            4567899999999999999999999999   4433333322111          1110      00  011122222222


Q ss_pred             CC---CCCHHHHHHHHHHH-----HHh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 GK---IVPSEVTIKLLQKA-----MEE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~~---~~~~~~~~~~l~~~-----l~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.   ...++.+.+.++..     +.. +.+ +..+-+   .....++|+..+++++..+|+++| ||+|+
T Consensus      1130 ~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLi-LDEpT 1199 (1284)
T 3g5u_A         1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL-LDEAT 1199 (1284)
T ss_dssp             CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEE-EESCS
T ss_pred             cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence            21   23444444444332     111 111 111111   134459999999999988898888 99996

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.12  E-value=1.6e-06  Score=64.42  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=24.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..+.++.+++|.||+|||||||++.|+..+.
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4678899999999999999999999997663

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.12  E-value=1.8e-06  Score=65.13  Aligned_cols=31  Identities=16%  Similarity=0.229  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..++++.+++|+||+|||||||++.|+..+.
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3568899999999999999999999997764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.12  E-value=3.5e-06  Score=66.10  Aligned_cols=38  Identities=37%  Similarity=0.720  Sum_probs=31.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDL   55 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di   55 (182)
                      ...|..++|.||||+|||++++.+++.+|.  ..++.+++
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l   72 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL   72 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence            456678899999999999999999999985  45666555

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.10  E-value=1.3e-06  Score=69.32  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      ++++|+|+||+|||||||+..|++.++...++.|.+
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            467899999999999999999999998776666543

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.05  E-value=2.5e-06  Score=67.45  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d   54 (182)
                      ..+.+|+|+||+|||||||+..|++.++...++.|.
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            446789999999999999999999999876666543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.05  E-value=2.5e-06  Score=62.20  Aligned_cols=26  Identities=38%  Similarity=0.650  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      +.++|+||+|||||||++.|+..+++
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            36899999999999999999988763

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.05  E-value=3.6e-06  Score=66.80  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..++.+++|+|++|||||||++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            6788999999999999999999999765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.01  E-value=3.9e-06  Score=66.34  Aligned_cols=31  Identities=19%  Similarity=0.503  Sum_probs=28.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.++++.+++|+||+|||||||++.|+..+
T Consensus       120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            5678999999999999999999999999766

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.98  E-value=5.2e-06  Score=64.56  Aligned_cols=30  Identities=23%  Similarity=0.413  Sum_probs=25.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      .++++  ++|.|||||||||+++.|+..++..
T Consensus        42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~~   71 (274)
T 2x8a_A           42 VTPAG--VLLAGPPGCGKTLLAKAVANESGLN   71 (274)
T ss_dssp             CCCSE--EEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred             CCCCe--EEEECCCCCcHHHHHHHHHHHcCCC
Confidence            34444  9999999999999999999988743

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.98  E-value=3e-06  Score=65.50  Aligned_cols=119  Identities=20%  Similarity=0.261  Sum_probs=62.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHH-------HHHHHHcCCh----hhHHHHHHHHcCC-C
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDL-------LRAEIKSGSE----NGTMIQNMIKEGK-I   79 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di-------~~~~~~~~~~----~~~~~~~~~~~~~-~   79 (182)
                      ++.+.++.+++|+||+|||||||++.|+..+.   -..++..++       ++.......+    ...+..+.+..+. .
T Consensus        40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~  119 (260)
T 2ghi_A           40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD  119 (260)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCC
Confidence            56778999999999999999999999994321   111211111       0110110000    0112223222221 1


Q ss_pred             CCHHHHHHHHHH-----HHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           80 VPSEVTIKLLQK-----AMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        80 ~~~~~~~~~l~~-----~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...+.+.+++..     .+.. .......++    .....++|+..+++++..+|+++| ||+|+
T Consensus       120 ~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll-LDEPt  183 (260)
T 2ghi_A          120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI-FDEAT  183 (260)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEE-EECCC
T ss_pred             CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence            223333333221     1111 011111122    344569999999999988998777 99997

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.97  E-value=5.8e-06  Score=64.90  Aligned_cols=30  Identities=33%  Similarity=0.462  Sum_probs=26.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ...++.+|+|+|++||||||+++.|++.++
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            346778999999999999999999998775

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.96  E-value=4e-05  Score=59.88  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+.-++|+||||+|||++++.+++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            445579999999999999999999887

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.93  E-value=8.2e-06  Score=67.45  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      -.+.|+=|++.||||||||++|+++|.+++..++
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~  244 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFL  244 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence            3566788999999999999999999999986543

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.93  E-value=8.6e-06  Score=60.74  Aligned_cols=43  Identities=16%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             ccccCchhhhhhhc--CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176            3 TVVETPVKEADATV--TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus         3 ~~~~~~~~~~~~~~--~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.+.+.....+...  .++++.+++|+|+|||||||+++.++..+
T Consensus         3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A            3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            33444444444433  36788999999999999999999998543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.92  E-value=9.4e-06  Score=67.00  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=29.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      -..+|+=+++.||||||||++|+++|.+++..++
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~  235 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI  235 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            3456777999999999999999999999986543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=9.4e-06  Score=67.17  Aligned_cols=34  Identities=26%  Similarity=0.530  Sum_probs=29.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      -..+|+=|++.||||||||++|+++|.+++..++
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~  244 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI  244 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            3566788999999999999999999999986654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.91  E-value=5.8e-06  Score=67.64  Aligned_cols=34  Identities=18%  Similarity=0.390  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d   54 (182)
                      +++|+|+||+|||||||+..|++.++...++.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            4689999999999999999999999977776654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.91  E-value=0.00019  Score=52.51  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++|+|++|+||||+++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.90  E-value=1e-05  Score=65.78  Aligned_cols=37  Identities=27%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~   51 (182)
                      +...+++.+++|.|||||||||+++.|+..++...+.
T Consensus       163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            3467888999999999999999999999888755443

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.89  E-value=9.3e-06  Score=66.45  Aligned_cols=34  Identities=24%  Similarity=0.487  Sum_probs=28.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      -.++|+=+++.||||||||++|+++|.+.+..++
T Consensus       178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~  211 (405)
T 4b4t_J          178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI  211 (405)
T ss_dssp             TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence            3456677999999999999999999999986654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.88  E-value=5.9e-06  Score=69.66  Aligned_cols=30  Identities=7%  Similarity=0.005  Sum_probs=27.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      ..++.+|+|+|.+||||||+++.|+++|+.
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            356789999999999999999999999986

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.88  E-value=1.1e-05  Score=63.67  Aligned_cols=29  Identities=28%  Similarity=0.605  Sum_probs=25.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...++.+++|+|++||||||+++.|+..+
T Consensus        96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             CSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999765

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.87  E-value=1.3e-05  Score=63.05  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEI   60 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~   60 (182)
                      ..++.-++|+||||+||||+++.++..++..  .++..++.....
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~   90 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF   90 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence            4567789999999999999999999998754  456666655443

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.85  E-value=6.9e-06  Score=61.31  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=25.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++++.+++|+||+||||||+++.|+..+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46788999999999999999999998643

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.85  E-value=1.5e-05  Score=60.71  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      ..+.-++|+||||+|||++++.+++.++..++
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~   68 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL   68 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            44566899999999999999999999885543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.85  E-value=1.6e-05  Score=60.80  Aligned_cols=29  Identities=28%  Similarity=0.446  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      +.-++|+||||+||||+++.++..++...
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~   73 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPF   73 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCE
Confidence            44589999999999999999999987543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.84  E-value=1.2e-05  Score=62.09  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..++.+++|+||+||||||+++.|+..+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            6788999999999999999999998654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.83  E-value=1.3e-05  Score=61.05  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=25.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCC--cEecHHHH
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFGY--THLSAGDL   55 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di   55 (182)
                      ++|.|||||||||+++.++..++.  ..++..++
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~   85 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDF   85 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence            999999999999999999988753  34554444

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.83  E-value=1.2e-05  Score=70.04  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQC   38 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla   38 (182)
                      -+++++++.+++|+||+|||||||+
T Consensus        37 vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           37 IDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             cEEEECCCCEEEEECCCCCCHHHHh
Confidence            3566789999999999999999996

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.83  E-value=1.6e-05  Score=61.96  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      ++.-++|+||||+||||+++.+++.++..+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~   82 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATF   82 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence            467899999999999999999999988544

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.82  E-value=1.7e-05  Score=61.39  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      ..+.-++|+||||+||||+++.+++.++..++
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~   80 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI   80 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            45667999999999999999999999986543

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=97.80  E-value=5.1e-05  Score=59.72  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..+.+|+|-|.-||||+|..+.|.+.++
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ld  111 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMN  111 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence            4589999999999999999999998885

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.80  E-value=1.6e-05  Score=63.40  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      +..++|+||||+||||+++.++..++..
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~   78 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTN   78 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            3568999999999999999999998643

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.80  E-value=1.6e-05  Score=66.10  Aligned_cols=34  Identities=21%  Similarity=0.433  Sum_probs=29.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      -..+|+=|+|.||||||||++|+++|.+++..++
T Consensus       239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi  272 (467)
T 4b4t_H          239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFI  272 (467)
T ss_dssp             TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE
Confidence            3567788999999999999999999999986653

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.80  E-value=2e-05  Score=64.93  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      -.+.|+=|++.||||||||++|+++|.+++..++
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi  245 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL  245 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE
Confidence            3566778999999999999999999999986654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.79  E-value=1.3e-05  Score=56.61  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++..++|+|++|||||||++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            67889999999999999999999766

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.79  E-value=1.3e-05  Score=58.93  Aligned_cols=25  Identities=36%  Similarity=0.501  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.+++|+|++||||||+++.|+..+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            3578999999999999999999766

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.79  E-value=1.8e-05  Score=63.88  Aligned_cols=29  Identities=28%  Similarity=0.605  Sum_probs=25.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...++.+++|+|++||||||+++.|+..+
T Consensus       153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            45678999999999999999999999765

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.76  E-value=1.2e-05  Score=59.99  Aligned_cols=26  Identities=35%  Similarity=0.442  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +.++.+++|.||+|||||||++.|+.
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhc
Confidence            46788999999999999999999983

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.75  E-value=0.00012  Score=60.80  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      .-++|+||||+||||+++.+++.++..++
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~   79 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVE   79 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            56899999999999999999999876543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.74  E-value=2.3e-05  Score=62.51  Aligned_cols=28  Identities=36%  Similarity=0.570  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+|.+++|+||+||||||+++.|+..+
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3678999999999999999999999765

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.74  E-value=2.4e-05  Score=60.29  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=28.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      ...+.-++|+||||+|||++|+.+++.++..++
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~   93 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI   93 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            345678999999999999999999999886543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.74  E-value=2.4e-05  Score=60.60  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=25.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCC--cEecHHHH
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFGY--THLSAGDL   55 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di   55 (182)
                      ++|+|||||||||+++.|+..++.  ..++..++
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~  109 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDF  109 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence            899999999999999999988753  34454444

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.73  E-value=2.1e-05  Score=62.08  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+++|+||+||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999999765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.73  E-value=2.5e-05  Score=65.54  Aligned_cols=31  Identities=32%  Similarity=0.554  Sum_probs=27.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++...++.+++|+|++||||||+++.|+..+
T Consensus       287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            3456788999999999999999999998765

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.73  E-value=3e-05  Score=57.40  Aligned_cols=30  Identities=23%  Similarity=0.096  Sum_probs=25.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      -++++.+++|+|+|||||||+++.++..-+
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~   45 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGLLSG   45 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence            368899999999999999999999986333

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.72  E-value=2.4e-05  Score=62.87  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL   55 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di   55 (182)
                      .+.-++|+||||+|||++|+.|++.++..+  ++..++
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l   87 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL   87 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence            456789999999999999999999998554  444443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.72  E-value=3.1e-05  Score=61.31  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL   55 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di   55 (182)
                      ++.-++|+||||+|||++++.+++.++..+  ++..++
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l   87 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL   87 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence            456799999999999999999999988544  455454

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.71  E-value=1.8e-05  Score=58.68  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~   52 (182)
                      +.......+..|+|+||+|+||||++..|+++.+ ..++.
T Consensus        26 Ha~~v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd   64 (205)
T 2qmh_A           26 HGVLVDIYGLGVLITGDSGVGKSETALELVQRGH-RLIAD   64 (205)
T ss_dssp             ESEEEEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred             eEEEEEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence            3333334578899999999999999999998876 55544

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.69  E-value=0.0013  Score=51.75  Aligned_cols=33  Identities=12%  Similarity=0.094  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~   53 (182)
                      +..++|+|++|+||||+++.+++..+..+++..
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~   63 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR   63 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence            378999999999999999999988876666553

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.69  E-value=3.1e-05  Score=55.50  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+..++|+|++|+||||+++.+++.+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            445678999999999999999999886

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.68  E-value=3.4e-05  Score=61.69  Aligned_cols=31  Identities=23%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++...++.+++|+|+||||||||++.|+..+
T Consensus        49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             GGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4567889999999999999999999998654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.68  E-value=3.4e-05  Score=60.22  Aligned_cols=31  Identities=26%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...++++.+++|+|+|||||||+++.|+..+
T Consensus        29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             HCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999999988654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.68  E-value=2e-05  Score=63.53  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=26.6

Q ss_pred             CCCC--CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           17 TVKK--PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        17 ~~~~--~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      ...+  +..++|+|++|||||||++.|+..+..
T Consensus       164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4456  889999999999999999999977653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.67  E-value=3.7e-05  Score=61.00  Aligned_cols=30  Identities=20%  Similarity=0.327  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh-CCc
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYT   48 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l-g~~   48 (182)
                      .++.-++|.||||+|||++++.+++.+ +..
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~   73 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEANNST   73 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTSCE
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcCCCc
Confidence            445789999999999999999999988 543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.66  E-value=1e-05  Score=67.45  Aligned_cols=31  Identities=16%  Similarity=0.283  Sum_probs=27.1

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++...++.+++|+||+|||||||++.|+..
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            3556789999999999999999999999853

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.64  E-value=3.6e-05  Score=63.77  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~   51 (182)
                      ++.-|+|.||||+||||+++.|++.++..++.
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~   80 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence            34569999999999999999999999876543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.64  E-value=0.0013  Score=52.59  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++|+||+|+||||+++.+++.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999887

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.64  E-value=0.00036  Score=55.21  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      -++|+||||+||||+++.+++.++
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999998764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.64  E-value=3.8e-05  Score=57.31  Aligned_cols=27  Identities=11%  Similarity=0.160  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+..++|+||||+||||+++.+++.++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999998764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.64  E-value=4.3e-05  Score=60.40  Aligned_cols=28  Identities=36%  Similarity=0.738  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..++.+|+|+|++||||||++..|+..+
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            3567899999999999999999999766

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.63  E-value=4.4e-05  Score=59.41  Aligned_cols=30  Identities=17%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      .+.-++|+||||+|||++++.+++.++...
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~   78 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPF   78 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            345688999999999999999999987543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.62  E-value=4.4e-05  Score=61.39  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL   55 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di   55 (182)
                      ++.-++|+||||+|||++|+.+++.++..+  ++..++
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l  120 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL  120 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence            345689999999999999999999998654  455444

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.62  E-value=9.2e-05  Score=54.28  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=28.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRA   58 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l---g~--~~~~~~di~~~   58 (182)
                      ..++|+|++|+||||+++.++..+   +.  .+++..++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~   96 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE   96 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence            678999999999999999999876   33  33565555433

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.62  E-value=1.5e-05  Score=64.16  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      ....|+|+|++||||||+++.|++.+++.+
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            345699999999999999999999988665

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.61  E-value=4.1e-05  Score=54.77  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+..++|+|++|+||||+++.+++.+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999999887

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.61  E-value=4.1e-05  Score=55.26  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=25.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+++.++ +.+|+|++||||||++++|.-.++
T Consensus        21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             EEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            3445555 899999999999999999986664

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.60  E-value=4.6e-05  Score=55.08  Aligned_cols=25  Identities=32%  Similarity=0.166  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++++|+|++||||||++..|++.+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.60  E-value=1.9e-05  Score=61.28  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA   58 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~   58 (182)
                      ..++|+|++|||||||.+.|+..   ...+.+.+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~---~~~~~G~i~~~   36 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKS---QVSRKASSWNR   36 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHH---HC---------
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC---CCCCCCccccC
Confidence            36899999999999999999944   44455555443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.59  E-value=4.8e-05  Score=61.42  Aligned_cols=31  Identities=19%  Similarity=0.408  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      .+.-++|+||||+|||++|+.+++.++..++
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~  101 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIA  101 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3456899999999999999999999975443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.59  E-value=5.6e-05  Score=60.78  Aligned_cols=31  Identities=29%  Similarity=0.464  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      ..+.-++|+||||+|||++++.+++.++..+
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~  145 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATF  145 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence            3466799999999999999999999998654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.57  E-value=3.3e-05  Score=58.06  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=28.2

Q ss_pred             hhhhhhc--CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           10 KEADATV--TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        10 ~~~~~~~--~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ...+..+  -++++.+++|+|+|||||||+++.++..
T Consensus        11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3444444  3578899999999999999999999874

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.57  E-value=2.1e-05  Score=60.30  Aligned_cols=29  Identities=24%  Similarity=0.434  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      +.-++|+||||+|||++++.+++.++..+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~   72 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPF   72 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            33488999999999999999999887544

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.57  E-value=6e-05  Score=54.71  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++++|+|++||||||+++.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999988764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.56  E-value=5.6e-05  Score=61.29  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..++.+++|+||+||||||+++.|+..+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5678899999999999999999998654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.56  E-value=5.6e-05  Score=56.37  Aligned_cols=29  Identities=14%  Similarity=0.169  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      ++...++|.||||+||||+|..|++.+.-
T Consensus        56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g   84 (212)
T 1tue_A           56 PKKNCLVFCGPANTGKSYFGMSFIHFIQG   84 (212)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            44457999999999999999999988753

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.55  E-value=6.5e-05  Score=63.38  Aligned_cols=31  Identities=29%  Similarity=0.501  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      .+..++|+||||+||||+++.+++.+++.++
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i  106 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDIL  106 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            3468999999999999999999999986654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.54  E-value=1.8e-05  Score=63.98  Aligned_cols=31  Identities=29%  Similarity=0.426  Sum_probs=26.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++...++.+++|+|++||||||+++.|+..+
T Consensus       169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          169 RRAVQLERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             HHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4456788999999999999999999999654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.54  E-value=2.4e-05  Score=56.64  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .+++|+|++|||||||++.|+..+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998776

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.53  E-value=6.6e-05  Score=60.54  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++.+++|+||+||||||+++.|+..+
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            556699999999999999999998654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.53  E-value=5.5e-05  Score=62.37  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             hhhcCCCCCeE--EEEEcCCCCChHHHHHHHH
Q 030176           13 DATVTVKKPTV--VFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        13 ~~~~~~~~~~~--i~I~G~~GsGKSTla~~La   42 (182)
                      +-++.+.++.+  ++|+|++|||||||.+.|+
T Consensus        32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~   63 (427)
T 2qag_B           32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLF   63 (427)
T ss_dssp             HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred             CCceEecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence            34567788988  9999999999999999998

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.52  E-value=0.0027  Score=52.44  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-----CC--cEecHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF-----GY--THLSAGDLL   56 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l-----g~--~~~~~~di~   56 (182)
                      +.-++|+||||+||||+++.++..+     +.  .+++..++.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            4568999999999999999999876     43  455665543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.52  E-value=0.00011  Score=57.97  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLL   56 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l---g--~~~~~~~di~   56 (182)
                      .+.-++|+||||+||||+++.+++.+   +  +.+++..++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            34568999999999999999999877   4  4456665553

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.51  E-value=6.8e-05  Score=55.58  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +..++|+|++|+||||+++.+++.++
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999999998774

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.51  E-value=1.8e-05  Score=66.21  Aligned_cols=30  Identities=33%  Similarity=0.491  Sum_probs=25.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+.+ .+++|+||+|||||||++.|+..+
T Consensus        24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             EEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence            456677 999999999999999999999443

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.51  E-value=4.4e-05  Score=60.07  Aligned_cols=39  Identities=18%  Similarity=0.137  Sum_probs=28.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR   57 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~   57 (182)
                      +....+.+++|.|++|||||||.+.|+   |....+.+++..
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~---g~~~~~~G~i~~  202 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAIN---PGLKLRVSEVSE  202 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHS---TTCCCC------
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhc---ccccccccceec
Confidence            344567899999999999999999999   777777777654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.51  E-value=8.2e-05  Score=61.78  Aligned_cols=27  Identities=30%  Similarity=0.570  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ++.-++|.||||+|||++|+.+++.++
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            446789999999999999999999998

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.50  E-value=7.6e-05  Score=59.11  Aligned_cols=29  Identities=21%  Similarity=0.168  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      +.-++|+|+||+|||++++.+++.++..+
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~   83 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANI   83 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence            34589999999999999999999987554

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.49  E-value=8.2e-05  Score=63.21  Aligned_cols=29  Identities=28%  Similarity=0.532  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      ++..++|+|||||||||+++.++..++..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~  135 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK  135 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            67799999999999999999999988644

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.48  E-value=0.00011  Score=61.40  Aligned_cols=30  Identities=20%  Similarity=0.456  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      +.-++|+||||+||||+++.++...+.+++
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~   78 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFF   78 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence            344889999999999999999999886543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.48  E-value=7.9e-05  Score=58.56  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++.+++|+|++||||||++..|+..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999998654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.47  E-value=0.0001  Score=58.56  Aligned_cols=29  Identities=21%  Similarity=0.441  Sum_probs=25.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...++.+|+|+|++|+||||++..|+..+
T Consensus       101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          101 KENRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             CTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34678899999999999999999998765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.46  E-value=8.8e-05  Score=59.32  Aligned_cols=28  Identities=25%  Similarity=0.514  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      ++..++|+||||+|||++++.+++.++.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3568999999999999999999999873

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.46  E-value=6.4e-05  Score=58.21  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++++.+++|.|+||||||||+..++..
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            568899999999999999999988853

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.44  E-value=0.0001  Score=60.71  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .++.+++|+||+||||||+++.|+..+.
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            5678999999999999999999997763

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.44  E-value=0.00012  Score=59.47  Aligned_cols=31  Identities=19%  Similarity=0.363  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      .+.-++|+||||+|||++++.+++.++..++
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~  177 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFF  177 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence            3567999999999999999999999886543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.44  E-value=5.7e-05  Score=60.94  Aligned_cols=35  Identities=17%  Similarity=0.347  Sum_probs=26.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcE-ecHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLL   56 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~-~~~~di~   56 (182)
                      .++.+++|+|+||||||||++.|+   |... ...+++.
T Consensus       213 ~~G~~~~lvG~sG~GKSTLln~L~---g~~~~~~~G~I~  248 (358)
T 2rcn_A          213 LTGRISIFAGQSGVGKSSLLNALL---GLQNEILTNDVS  248 (358)
T ss_dssp             HTTSEEEEECCTTSSHHHHHHHHH---CCSSCCCCC---
T ss_pred             cCCCEEEEECCCCccHHHHHHHHh---ccccccccCCcc
Confidence            357899999999999999999999   6555 5555553

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.44  E-value=0.0001  Score=57.54  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..++|+||||+||||+++.+++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            479999999999999999999886

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.42  E-value=0.00011  Score=60.75  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh-CCc--EecHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYT--HLSAGDLLRA   58 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l-g~~--~~~~~di~~~   58 (182)
                      .++.-++|+||||+|||++++.++..+ +..  .++..++...
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~  207 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK  207 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence            345779999999999999999999988 543  3455555433

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.41  E-value=9.1e-05  Score=51.74  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.-++|+|+||+|||++|+.+++..
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3458999999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.41  E-value=0.00011  Score=55.16  Aligned_cols=27  Identities=30%  Similarity=0.575  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++++.+++|+|+|||||||++..++..
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            578899999999999999998777654

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.41  E-value=0.00049  Score=57.82  Aligned_cols=28  Identities=25%  Similarity=0.508  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..+.+|+|-|.-||||+|..+.|.+.++
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~   68 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMD   68 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcC
Confidence            5689999999999999999999999885

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.41  E-value=9.5e-05  Score=65.47  Aligned_cols=38  Identities=24%  Similarity=0.486  Sum_probs=31.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL   55 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di   55 (182)
                      ..+|+=|+|.||||+|||+|++.+|.++|...  ++..++
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l  274 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI  274 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence            45677899999999999999999999998654  455554

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.41  E-value=0.0011  Score=52.68  Aligned_cols=143  Identities=9%  Similarity=0.077  Sum_probs=72.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH-----HHHHHHHcCChhhHHHHHHHHc---CCCCCHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD-----LLRAEIKSGSENGTMIQNMIKE---GKIVPSEVTIKLLQK   91 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d-----i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~   91 (182)
                      .+..++++||+|+||||+++.+++.+.........     ........+......   .+..   +....-+.+.+++..
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~---~~~~~~~~~~~~i~~ir~l~~~   99 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY---TLAPEKGKNTLGVDAVREVTEK   99 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE---EECCCTTCSSBCHHHHHHHHHH
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE---EEeccccCCCCCHHHHHHHHHH
Confidence            35679999999999999999999988643211000     001111100000000   0000   112333334444333


Q ss_pred             HHHh---cCCCcEEEeCCC-CCHHHHHHHHHHhCCCC-cE-EEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176           92 AMEE---SGNDKFLIDGFP-RNEENRAAFEAVTKIEP-EF-VLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS  165 (182)
Q Consensus        92 ~l~~---~~~~~~ildg~~-~~~~q~~~l~~~~~~~~-~~-vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (182)
                      ....   .....+|+|..- ........+.+.+...| .. +|++....+.+...+..|-..-.-.+.+.++...|+...
T Consensus       100 ~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~  179 (334)
T 1a5t_A          100 LNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSRE  179 (334)
T ss_dssp             TTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred             HhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHh
Confidence            2211   134677888742 23444455666664333 23 343444455566677776544444566777777777543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.41  E-value=0.00013  Score=61.38  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCc--EecHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGD   54 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~d   54 (182)
                      =++|+||||+|||||++.++...+..  .++..+
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~   99 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSD   99 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhH
Confidence            39999999999999999999987643  344433

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.40  E-value=0.00012  Score=58.81  Aligned_cols=27  Identities=26%  Similarity=0.234  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+.+++|+|+||||||||.+.|...+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            347899999999999999999998754

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.40  E-value=0.0015  Score=50.91  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=20.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 030176           24 VFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++|+||+|+||||+++.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            9999999999999999999876

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.39  E-value=0.00012  Score=58.34  Aligned_cols=27  Identities=26%  Similarity=0.567  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+..++|+|++|+||||+++.+++.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999877

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.39  E-value=2.3e-05  Score=61.98  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=24.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL   56 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~   56 (182)
                      ....++.+++|+|+||||||||.+.|+   |......+++.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~---g~~~~~~G~I~  205 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAIS---PELGLRTNEIS  205 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHC---C----------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhc---cccccccccee
Confidence            345678899999999999999999998   65555555553

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.38  E-value=6.5e-05  Score=55.15  Aligned_cols=27  Identities=15%  Similarity=0.223  Sum_probs=24.7

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      +...++..++|+|++|||||||.+.|.
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLT   47 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence            667888999999999999999999887

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.37  E-value=8.1e-05  Score=59.81  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=26.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..++++.++.|+|+||||||||++.++...
T Consensus       126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356889999999999999999999999765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.37  E-value=2.4e-05  Score=62.50  Aligned_cols=30  Identities=37%  Similarity=0.449  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +...++.+++|+|++||||||+++.|+..+
T Consensus       166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344677899999999999999999998544

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.36  E-value=0.00058  Score=57.38  Aligned_cols=123  Identities=10%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   95 (182)
                      ..+.+|+|-|.-||||+|..+.|.+.++   +.++....--....                ...+-.+    ....  ..
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~----------------~~~yl~R----~~~~--lP  355 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEER----------------AQPYLWR----FWRH--IP  355 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHH----------------TSCTTHH----HHTT--CC
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhh----------------cchHHHH----HHHh--CC
Confidence            4678999999999999999999998874   32222110000000                1111100    0000  11


Q ss_pred             cCCCcEEEeCCC-C-----------CH-------HHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhcc-------
Q 030176           96 SGNDKFLIDGFP-R-----------NE-------ENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQV-------  147 (182)
Q Consensus        96 ~~~~~~ildg~~-~-----------~~-------~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~-------  147 (182)
                      ..+..+|-|..- .           ..       .+...|++.+  ..-+.+.+||+.|.++..+|+.+|...       
T Consensus       356 ~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~  435 (500)
T 3czp_A          356 ARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKI  435 (500)
T ss_dssp             CTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTSCC
T ss_pred             CCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCC
Confidence            235556666421 1           11       2222333332  113678999999999999999998641       


Q ss_pred             CCCCCcchHHHHHHHH
Q 030176          148 RQKLPFSWGVFCLFIM  163 (182)
Q Consensus       148 r~~~~~~~~~~~~~~~  163 (182)
                      .+.|-...+.|++|..
T Consensus       436 s~~D~~~~~~w~~y~~  451 (500)
T 3czp_A          436 TEEDWRNRDKWDQYVD  451 (500)
T ss_dssp             CSSTTTGGGGHHHHHH
T ss_pred             CHHHHHHHHhHHHHHH
Confidence            2234444566556554

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.35  E-value=0.00012  Score=57.51  Aligned_cols=29  Identities=28%  Similarity=0.442  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      +..++|+|++|+||||+++.+++.++..+
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~   66 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNL   66 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            45689999999999999999999887554

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.35  E-value=0.00016  Score=52.85  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+++++|++||||||++..++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999986666554

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.34  E-value=0.00018  Score=57.59  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+..++|+||+|+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999876

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.33  E-value=0.0001  Score=53.30  Aligned_cols=27  Identities=30%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...+...|+|+|.+|+|||||.+.|..
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~   43 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKP   43 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSC
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhc
Confidence            345667899999999999999998874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.33  E-value=0.00014  Score=60.16  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=29.3

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +.-+.+.++.+++|.|++|||||||++.|+....
T Consensus       149 d~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          149 NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             HHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3346778999999999999999999999997663

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.33  E-value=0.00016  Score=58.11  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=29.9

Q ss_pred             hhhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           12 ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        12 ~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+..+.+.++.+++|.|++|||||||.+.|+....
T Consensus        62 ld~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           62 IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             HHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34446778999999999999999999999997654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.32  E-value=0.00013  Score=58.27  Aligned_cols=27  Identities=22%  Similarity=0.472  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+..++|+||+|+||||+++.+++.+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999877

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.32  E-value=6.7e-05  Score=61.68  Aligned_cols=22  Identities=32%  Similarity=0.344  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+++|+|++|||||||.+.|+.
T Consensus        70 ~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhC
Confidence            3999999999999999999993

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.29  E-value=0.00014  Score=57.77  Aligned_cols=22  Identities=23%  Similarity=0.579  Sum_probs=20.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 030176           24 VFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++|+||||+||||+++.+++.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999876

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.28  E-value=0.00017  Score=59.65  Aligned_cols=26  Identities=27%  Similarity=0.575  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+|+++|++||||||++..|+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998665

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.26  E-value=0.00016  Score=52.59  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ...++|.|++|||||||++.++..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999853

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.25  E-value=0.00024  Score=59.60  Aligned_cols=38  Identities=21%  Similarity=0.465  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLL   56 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~   56 (182)
                      ..+.-++|+||||+|||++++.++..++..  .++..++.
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~  275 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM  275 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence            455679999999999999999999998754  45555553

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.25  E-value=0.00025  Score=56.68  Aligned_cols=30  Identities=23%  Similarity=0.184  Sum_probs=25.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +...++.+++|+|+||+||||+++.|+..+
T Consensus        51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            445778899999999999999999998654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.24  E-value=0.00015  Score=57.38  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++|+|++||||||+.+.|...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            468999999999999999999854

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.24  E-value=0.00098  Score=52.48  Aligned_cols=127  Identities=9%  Similarity=-0.036  Sum_probs=64.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHHhc---
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEES---   96 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~---   96 (182)
                      .+.+++.||+|+||||+++.|++..+...-           ...+.-     .+.. +....-+.+.+++......+   
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-----------~~~d~~-----~l~~~~~~~~id~ir~li~~~~~~p~~~   81 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPP-----------KASDVL-----EIDPEGENIGIDDIRTIKDFLNYSPELY   81 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCC-----------CTTTEE-----EECCSSSCBCHHHHHHHHHHHTSCCSSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhc-----------cCCCEE-----EEcCCcCCCCHHHHHHHHHHHhhccccC
Confidence            578999999999999999999975321000           000000     0000 11233333444443332221   


Q ss_pred             CCCcEEEeCC-CCCHHHHHHHHHHhCCCC-cE-EEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176           97 GNDKFLIDGF-PRNEENRAAFEAVTKIEP-EF-VLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS  165 (182)
Q Consensus        97 ~~~~~ildg~-~~~~~q~~~l~~~~~~~~-~~-vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (182)
                      ..+.+|+|.. .........+.+.+...| .. +|++....+.+..-+..| .- .-.+.+.++...|+...
T Consensus        82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~-~f~~l~~~~i~~~L~~~  151 (305)
T 2gno_A           82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF-RVVVNVPKEFRDLVKEK  151 (305)
T ss_dssp             SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE-EEECCCCHHHHHHHHHH
T ss_pred             CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE-eCCCCCHHHHHHHHHHH
Confidence            2467778773 233444556666664332 33 333333444555555555 22 22355667777777654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.24  E-value=0.00018  Score=57.25  Aligned_cols=22  Identities=32%  Similarity=0.758  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 030176           24 VFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++|+||+|+||||+++.+++.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.23  E-value=2.3e-05  Score=70.56  Aligned_cols=29  Identities=21%  Similarity=0.310  Sum_probs=26.1

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++.+.++.+++|+|++|||||||++.|+.
T Consensus       693 Sl~I~~GeivaIiGpNGSGKSTLLklLaG  721 (986)
T 2iw3_A          693 NFQCSLSSRIAVIGPNGAGKSTLINVLTG  721 (986)
T ss_dssp             EEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            45678899999999999999999999993

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.23  E-value=0.00018  Score=58.04  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++++.++.|.||||||||||+..++..+
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999988654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.23  E-value=0.00012  Score=66.06  Aligned_cols=115  Identities=15%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHH-h-CCcEecHHHHHHH-HHHcC---ChhhHHHHHHHHcC-CCCCHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH-F-GYTHLSAGDLLRA-EIKSG---SENGTMIQNMIKEG-KIVPSEVTIK   87 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~-l-g~~~~~~~di~~~-~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~   87 (182)
                      ++.+.++.+++|+|++|||||||++.|+.- . |...  ...+ +. .....   ........+.+... ... .+.+.+
T Consensus       455 sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~--~~~~-~~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~  530 (986)
T 2iw3_A          455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPT--QEEC-RTVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKD  530 (986)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCC--TTTS-CEEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHH
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc--ccce-eEEEEcccccccccCCcHHHHHHHhhcCH-HHHHHH
Confidence            556788999999999999999999999831 0 1100  0000 00 00000   00011111222110 001 222333


Q ss_pred             HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        88 ~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ++............-+......++|+..+++++..+|+++| ||+|+
T Consensus       531 ~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL-LDEPT  576 (986)
T 2iw3_A          531 KLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL-LDEPT  576 (986)
T ss_dssp             HHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE-EESTT
T ss_pred             HHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence            33322110000000123455679999999999988998777 99997

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.22  E-value=0.00014  Score=57.50  Aligned_cols=27  Identities=15%  Similarity=0.293  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      .-++|.||||+|||++++.+++.++..
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~   73 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLD   73 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            458999999999999999999988754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.22  E-value=0.0002  Score=56.32  Aligned_cols=29  Identities=14%  Similarity=0.189  Sum_probs=24.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ....+.+++|.|++|||||||.+.|+ ...
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            44567899999999999999999998 543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.21  E-value=0.0002  Score=60.52  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=23.9

Q ss_pred             hc-CCCCCeEEEEEcCCCCChHHHHHHH
Q 030176           15 TV-TVKKPTVVFVLGGPGSGKGTQCANI   41 (182)
Q Consensus        15 ~~-~~~~~~~i~I~G~~GsGKSTla~~L   41 (182)
                      ++ .++++.+++|+|+||||||||++.+
T Consensus        32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           32 SHGGLPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence            44 5678999999999999999999983

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.20  E-value=0.0002  Score=51.39  Aligned_cols=26  Identities=19%  Similarity=0.161  Sum_probs=21.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..+...|+|+|.+|+|||||.+.|..
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc
Confidence            35567899999999999999999873

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.20  E-value=0.00024  Score=55.92  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      ..+..+++.||||+||||+++.+++.++..++
T Consensus        46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~   77 (324)
T 3u61_B           46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMM   77 (324)
T ss_dssp             CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred             CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence            34467888999999999999999999985543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.20  E-value=0.00023  Score=50.38  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ...++|.|++|+|||||.+.|.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~   24 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALT   24 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            3679999999999999999998

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.18  E-value=0.00017  Score=52.65  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      +++|+|++||||||+|..|+.. +..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~   25 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQ   25 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCC
Confidence            3789999999999999999976 643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.18  E-value=0.00027  Score=50.74  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|++|+|||||.+.|..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999984

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.18  E-value=0.0003  Score=56.47  Aligned_cols=27  Identities=30%  Similarity=0.382  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .+..+|+|+|+||+||||++..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            466799999999999999999998776

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.00018  Score=57.17  Aligned_cols=28  Identities=7%  Similarity=0.217  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -.++..+.|+||||+|||++++.+++.+
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4577889999999999999999999887

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.17  E-value=0.00019  Score=51.87  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|+|||||.+.|..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhc
Confidence            3446899999999999999999874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.17  E-value=0.00028  Score=62.46  Aligned_cols=40  Identities=23%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLR   57 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di~~   57 (182)
                      ..+++-+++.||||||||.+|+++|.+.+..+  ++..+++.
T Consensus       508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s  549 (806)
T 3cf2_A          508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT  549 (806)
T ss_dssp             CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred             CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence            34566789999999999999999999998655  45555543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.16  E-value=0.00022  Score=51.48  Aligned_cols=43  Identities=21%  Similarity=0.146  Sum_probs=22.0

Q ss_pred             CCccccCchhhhhhhc-CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176            1 MGTVVETPVKEADATV-TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ||.+-..|........ ...+...|+|+|.+|+|||||.+.|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A            1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             ------------------CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcccccccccccccccCCCCccEEEEECCCCCCHHHHHHHHHc
Confidence            4555444433322222 224456899999999999999999874

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.16  E-value=0.00027  Score=50.43  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++..|+|+|++|+|||||.+.|..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999984

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.16  E-value=0.00031  Score=55.05  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+++++|++|+||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999998765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.16  E-value=0.00026  Score=51.59  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ..++|.|++|||||||++.|...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            57899999999999999999853

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.16  E-value=0.00029  Score=58.31  Aligned_cols=26  Identities=42%  Similarity=0.728  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +|.+|+++|++||||||++..|+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            47899999999999999999998765

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.15  E-value=0.00019  Score=58.79  Aligned_cols=25  Identities=20%  Similarity=0.438  Sum_probs=22.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ++++.++.|+|+||||||||+..|+
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHH
Confidence            5788999999999999999999775

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.15  E-value=0.00032  Score=49.36  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.+.+|+||+||||||+..+|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999999887433

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.14  E-value=0.0003  Score=56.10  Aligned_cols=27  Identities=15%  Similarity=0.219  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      +..++|+||+|+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999998863

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.14  E-value=0.00038  Score=51.47  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .+...++|+|.+||||||+++.|+..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998775

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.14  E-value=0.00021  Score=57.73  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=23.3

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++++..+ +.+|+||+||||||+..++.-.
T Consensus        18 ~i~~~~g-~~~i~G~NGaGKTTll~ai~~a   46 (365)
T 3qf7_A           18 DIEFQSG-ITVVEGPNGAGKSSLFEAISFA   46 (365)
T ss_dssp             EEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            4456555 7889999999999999988743

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.13  E-value=0.00033  Score=55.21  Aligned_cols=39  Identities=15%  Similarity=0.195  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC----Cc--EecHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG----YT--HLSAGDLLRAE   59 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg----~~--~~~~~di~~~~   59 (182)
                      +.-++|+||+|+|||+|+..++..+.    ..  ++...+++.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l  196 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV  196 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence            56789999999999999999987553    33  35555554433

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.13  E-value=0.00031  Score=50.92  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=26.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~   52 (182)
                      -.+.-++|+|++|+||||++..|.++ |+..+..
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaD   46 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCD   46 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence            35677999999999999999988764 6655544

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.12  E-value=0.00017  Score=60.79  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...+..++|+||+||||||+++.|+..+
T Consensus       257 v~~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          257 IEHKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4567789999999999999999998554

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.11  E-value=0.00029  Score=49.87  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .....|+|+|.+|+|||||.+.|..
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~   37 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc
Confidence            3456899999999999999999874

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.10  E-value=0.00024  Score=56.50  Aligned_cols=28  Identities=25%  Similarity=0.238  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++++.+++|.||||+|||||+..++...
T Consensus       120 i~~gsviLI~GpPGsGKTtLAlqlA~~~  147 (331)
T 2vhj_A          120 RYASGMVIVTGKGNSGKTPLVHALGEAL  147 (331)
T ss_dssp             EEESEEEEEECSCSSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHhC
Confidence            4566788999999999999999998653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.10  E-value=0.00011  Score=63.89  Aligned_cols=27  Identities=37%  Similarity=0.457  Sum_probs=23.6

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANI   41 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~L   41 (182)
                      +++++++.+++|+||+|||||||++.+
T Consensus       342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          342 SVKIPLGTFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             EEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred             eeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence            456788999999999999999999754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.10  E-value=8.1e-05  Score=51.92  Aligned_cols=25  Identities=24%  Similarity=0.194  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .-++|+|+||+|||++|+.++...+
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            4488999999999999999986655

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.09  E-value=0.00018  Score=56.98  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=21.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ++|+|+||+|||++++.+++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            89999999999999999999876

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.08  E-value=0.00035  Score=50.35  Aligned_cols=24  Identities=17%  Similarity=0.255  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|.+|||||||.+.|..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            446899999999999999998874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.07  E-value=0.00033  Score=50.50  Aligned_cols=43  Identities=12%  Similarity=0.132  Sum_probs=22.3

Q ss_pred             CCccccCchhhhhhhc-CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176            1 MGTVVETPVKEADATV-TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ||.+-.+|........ .......|+|+|.+|+|||||.+.|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A            1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             -------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHc
Confidence            5555555443322222 122346899999999999999999874

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.07  E-value=0.0001  Score=60.10  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ++.+.++ +++|+|++|||||||.++|.--++
T Consensus        55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           55 ELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             EEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            4456777 999999999999999999976554

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.07  E-value=0.00049  Score=51.84  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++.+++++|++|+||||++-.++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            467899999999999999888777665

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.07  E-value=0.00041  Score=52.08  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=25.3

Q ss_pred             hhhhcC--CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           12 ADATVT--VKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        12 ~~~~~~--~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|..+.  ++++.++.|+|+||+|||++|..++.
T Consensus        19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            344443  57889999999999999999877653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.06  E-value=0.00035  Score=50.98  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=21.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...+...|+|+|.+|+|||||++.|..
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHh
Confidence            3345567899999999999999999885

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.05  E-value=0.00041  Score=51.34  Aligned_cols=23  Identities=26%  Similarity=0.611  Sum_probs=19.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +++++++|+||||||++|..+..
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~   27 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMA   27 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHH
Confidence            46899999999999999877543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.05  E-value=0.00032  Score=56.35  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++++.++.|.|+||||||||+..++...
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999998887543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.05  E-value=0.00032  Score=53.64  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +.-++|+|++|+|||++++.+++..+
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            35688999999999999999998764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.04  E-value=0.00045  Score=54.23  Aligned_cols=25  Identities=28%  Similarity=0.624  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.+++++|++|+||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998766

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.02  E-value=0.00056  Score=52.87  Aligned_cols=27  Identities=15%  Similarity=0.385  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      ..-++|.||||+|||+++++|+..+++
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            456999999999999999999987654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.02  E-value=0.00058  Score=50.66  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .+...|+|+|.+|||||||+..|+..+
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998764

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.01  E-value=0.00053  Score=55.23  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++++.++.|.|+||+||||+|..++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999999998888653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.00  E-value=0.00039  Score=50.24  Aligned_cols=26  Identities=27%  Similarity=0.215  Sum_probs=20.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .......|+|+|.+|||||||++.|.
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~   38 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVK   38 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence            34555789999999999999999886

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.00  E-value=0.00053  Score=57.10  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...-++|+||||+|||++++.|++.+
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34467899999999999999999986

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.98  E-value=0.00052  Score=54.90  Aligned_cols=28  Identities=11%  Similarity=0.154  Sum_probs=25.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      -++++.++.|.|+|||||||+|..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3678899999999999999999998875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.98  E-value=0.00051  Score=49.87  Aligned_cols=26  Identities=12%  Similarity=0.184  Sum_probs=20.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ...+...|+|+|.+|+|||||.+.+.
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~   41 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYT   41 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHH
Confidence            34566789999999999999999887

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.98  E-value=0.0006  Score=53.87  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             chhhhhhhc-CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176            8 PVKEADATV-TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus         8 ~~~~~~~~~-~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +....+... -++++.+++|+|+||+||||++..++...
T Consensus        54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            333334433 36889999999999999999999888653

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.98  E-value=0.00059  Score=53.24  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++|+||+|+||||+++.+++.+
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            49999999999999999999876

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.98  E-value=0.00054  Score=47.71  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|+|++|+|||||.+.+..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            46799999999999999998874

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.97  E-value=0.00038  Score=57.50  Aligned_cols=26  Identities=35%  Similarity=0.556  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+|+|+|++|+||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999765

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.95  E-value=0.00022  Score=61.41  Aligned_cols=30  Identities=23%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEe-cHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHL-SAGDL   55 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~-~~~di   55 (182)
                      .++|+|++|||||||++.|+   |+... +.|.+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~---Gl~~P~~sG~v   77 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALS---GVALPRGSGIV   77 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHH---SCC-------C
T ss_pred             eEEEECCCCChHHHHHHHHh---CCCCCCCCCeE
Confidence            39999999999999999999   76544 45544

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.95  E-value=0.00045  Score=61.22  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .++.+++|+||+||||||+.+.++.
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iag  629 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTAL  629 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHH
Confidence            5678999999999999999999983

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.95  E-value=0.00077  Score=51.17  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=25.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...+..+++++|.+|+||||++..|+..+
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            34667899999999999999999998665

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.94  E-value=1.5e-05  Score=60.43  Aligned_cols=32  Identities=31%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL   56 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~   56 (182)
                      .+++|+||+||||||++++|+..+   ..+.+++.
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~---~~~~G~i~   59 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTAL---IPDLTLLH   59 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH---SCCTTTC-
T ss_pred             cEEEEECCCCCCHHHHHHHHhccc---ccCCCeEE
Confidence            567899999999999999999544   34444443

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.94  E-value=0.00059  Score=47.38  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ..|+++|.+|||||||++.|...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.94  E-value=0.00062  Score=47.28  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +.|+++|++|+|||||++.+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999843

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.00068  Score=48.81  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      .+...|+|+|++|||||||++.|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45568999999999999999998843

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.94  E-value=0.00067  Score=48.02  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|++|||||||.+.|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999999873

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.92  E-value=0.00043  Score=59.45  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..+..++|+|||||||||+++.|+..++
T Consensus        58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           58 NQKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            4556899999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.92  E-value=0.00045  Score=54.40  Aligned_cols=28  Identities=29%  Similarity=0.351  Sum_probs=22.6

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ++.++++-.++|+|.||+|||||.+.|.
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~   31 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLL   31 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHh
Confidence            3345666799999999999999999987

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.92  E-value=0.00083  Score=48.34  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      .....|+|+|++|+|||||.+.|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999999854

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.92  E-value=0.00044  Score=49.71  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|+|++|||||||++.+..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999873

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.92  E-value=0.00081  Score=47.18  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+++|.+|+|||||.+.|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3457899999999999999999864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.92  E-value=0.00065  Score=47.30  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+++|.+|||||||++.|..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            46799999999999999999874

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.92  E-value=0.00044  Score=54.70  Aligned_cols=29  Identities=24%  Similarity=0.260  Sum_probs=23.6

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      .+++.++ +.+|+|++|||||||.++|.-.
T Consensus        19 ~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l   47 (322)
T 1e69_A           19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKWV   47 (322)
T ss_dssp             EEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred             EEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence            3455555 9999999999999999999843

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.92  E-value=0.00064  Score=55.45  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...++..++|.|+||+|||||.+.|..
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            456778999999999999999999986

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.91  E-value=0.00051  Score=49.36  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      .+...|+++|.+|||||||++.|...
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcC
Confidence            34468999999999999999999853

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.91  E-value=0.00047  Score=58.19  Aligned_cols=29  Identities=24%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .+.++.+++|.|+||||||||++.++...
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56888999999999999999999998654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.90  E-value=0.00057  Score=53.14  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++|+||+|+||||+++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            38999999999999999999876

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.90  E-value=0.00066  Score=52.24  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|+|++|||||||.+.|..
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999999983

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.90  E-value=0.00049  Score=53.99  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .+...++|+|+||+|||||.+.|.
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~   29 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLL   29 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999998

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.90  E-value=0.00035  Score=62.73  Aligned_cols=28  Identities=14%  Similarity=0.269  Sum_probs=24.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ++...++.+++|+||+||||||+.+.++
T Consensus       667 sl~~~~g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          667 DLSEDSERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             EECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred             cccCCCCeEEEEECCCCCchHHHHHHHH
Confidence            4456778999999999999999999886

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.90  E-value=0.00075  Score=48.64  Aligned_cols=26  Identities=19%  Similarity=0.174  Sum_probs=21.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..+...|+|+|.+|||||||++.+..
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence            34556899999999999999987764

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.90  E-value=0.00067  Score=55.32  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             hhhhhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           10 KEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        10 ~~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.++......++..++|.|++|+|||||++.|++..
T Consensus       163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            455777788999999999999999999999888643

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.88  E-value=0.00076  Score=55.90  Aligned_cols=29  Identities=21%  Similarity=0.405  Sum_probs=25.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++++.+++|.|+||+||||++..++...
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            36788999999999999999998887643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.88  E-value=0.00063  Score=47.53  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+++|++|||||||++.|..
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            45789999999999999999874

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.87  E-value=0.00075  Score=55.48  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=25.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +++..+.+++|+||+||||||+.+++.-.++
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3455678999999999999999999986554

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.86  E-value=0.00052  Score=55.33  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=23.4

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ++.+.++ +.+|+||+||||||+.+++.-
T Consensus        21 ~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           21 TLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            4455555 999999999999999999874

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.86  E-value=0.00094  Score=48.09  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .....|+|+|++|+|||||.+.|.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~   44 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            345789999999999999999987

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.86  E-value=0.00075  Score=56.78  Aligned_cols=27  Identities=33%  Similarity=0.629  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++.+|+|+|++||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999999765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.85  E-value=0.00083  Score=48.84  Aligned_cols=27  Identities=15%  Similarity=0.291  Sum_probs=21.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...+...|+|+|.+|+|||||++.|..
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            345567899999999999999999874

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.85  E-value=0.00053  Score=61.71  Aligned_cols=28  Identities=18%  Similarity=0.089  Sum_probs=23.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ++...++.+++|+||+||||||+.+.++
T Consensus       656 sl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          656 YFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             EEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             eeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3345677899999999999999999884

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.85  E-value=0.0008  Score=55.43  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+++++|++||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999776

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.85  E-value=0.00057  Score=50.09  Aligned_cols=26  Identities=15%  Similarity=0.119  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ......|+|+|.+|||||||.+.|..
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhc
Confidence            34456899999999999999999874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.85  E-value=0.00075  Score=47.08  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|+|.+|||||||.+.|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.84  E-value=0.00086  Score=47.43  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +...|+|+|.+|+|||||.+.|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4468999999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.84  E-value=0.0007  Score=48.80  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .....|+|+|.+|+|||||.+.|..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhc
Confidence            3346899999999999999999875

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.84  E-value=0.0006  Score=54.01  Aligned_cols=28  Identities=25%  Similarity=0.433  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++++.++.|.|+|||||||+|..++...
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            5778999999999999999999998753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.83  E-value=0.00092  Score=47.94  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .....|+|+|.+|||||||++.|..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFN   45 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHc
Confidence            3446899999999999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.83  E-value=0.00093  Score=49.18  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      .....|+|+|++|+|||||++.|...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34568999999999999999999854

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.83  E-value=0.00077  Score=47.48  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ...|+|+|++|+|||||.+.|.
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~   25 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFA   25 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCccHHHHHHHHh
Confidence            4579999999999999999887

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.82  E-value=0.00093  Score=47.42  Aligned_cols=25  Identities=12%  Similarity=0.108  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|+|||||.+.+..
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            4557899999999999999998874

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.82  E-value=0.00089  Score=48.01  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .....|+|+|++|+|||||.+.|..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999998873

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.80  E-value=0.00078  Score=47.92  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|||||||++.|..
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Confidence            3456899999999999999999874

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.79  E-value=0.00089  Score=49.47  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +.+.+|+|++||||||+..+|.-.++
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            57899999999999999999875553

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.78  E-value=0.00066  Score=48.33  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .+...|+|+|++|||||||.+.+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            567899999999999999998886

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.78  E-value=0.0007  Score=59.76  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +.+++|+||+||||||+.+.++.
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iag  598 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTAL  598 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHh
Confidence            78999999999999999999983

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.77  E-value=0.0007  Score=53.43  Aligned_cols=27  Identities=22%  Similarity=0.180  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++++.++.|.|+||+||||+|..++..
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            577899999999999999999988864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.76  E-value=0.00087  Score=46.91  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+++|.+|+|||||.+.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35789999999999999999873

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.76  E-value=0.00093  Score=47.28  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|++|||||||++.|..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            346799999999999999998874

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.75  E-value=0.001  Score=58.51  Aligned_cols=27  Identities=19%  Similarity=0.464  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+.-++|+||||+|||++++.|++.+
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            344568999999999999999999987

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.75  E-value=0.00074  Score=47.67  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|++|+|||||.+.|..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            446899999999999999999874

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.75  E-value=0.00046  Score=58.05  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .-++|.||||+|||++++.|++.++
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            4589999999999999999998774

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.75  E-value=0.0011  Score=46.92  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|++|||||||++.|..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHh
Confidence            446799999999999999999873

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.74  E-value=0.0011  Score=47.21  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      .+...|+|+|.+|+|||||++.|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999998743

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.73  E-value=0.0012  Score=48.30  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ......|+|+|++|+|||||.+.|..
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            34567899999999999999999874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.72  E-value=0.0013  Score=47.67  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|+|||||.+.|..
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4457899999999999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.72  E-value=0.001  Score=46.50  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|+|++|+|||||.+.|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            5689999999999999999873

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.72  E-value=0.00092  Score=50.29  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .....|+|+|++|+|||||.+.|.
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~   50 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSIL   50 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHc
Confidence            345689999999999999999998

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.72  E-value=0.0011  Score=46.38  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La   42 (182)
                      ..|+|+|.+|+|||||.+.+.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            468999999999999999886

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.70  E-value=0.0015  Score=47.15  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .....|+|+|.+|+|||||.+.|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            3456899999999999999999875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.70  E-value=0.00091  Score=46.71  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+++|++|||||||.+.|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            5689999999999999998874

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.70  E-value=0.001  Score=48.86  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ....|+|+|.+|+|||||++.|..
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Confidence            446899999999999999999985

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.70  E-value=0.0013  Score=54.34  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++.+|+++|++|+||||++..|+..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999998888665

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.70  E-value=0.0011  Score=46.46  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La   42 (182)
                      ..|+|+|++|+|||||++.+.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999886

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.69  E-value=0.00096  Score=47.58  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|+|++|+|||||.+.|..
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHh
Confidence            45799999999999999999974

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.69  E-value=0.0016  Score=47.74  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++.+++++|++||||||.+-.++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            457899999999999999888887776

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.69  E-value=0.0011  Score=47.92  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|++.|++|+|||||.+.+..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445899999999999999999885

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.68  E-value=0.001  Score=46.57  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+++|.+|+|||||.+.+..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            35799999999999999999874

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.68  E-value=0.0011  Score=46.88  Aligned_cols=25  Identities=20%  Similarity=0.322  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|+|||||.+.|..
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            3446899999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.67  E-value=0.0016  Score=47.16  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=22.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ..+...|+|+|++|+|||||++.+.
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHH
Confidence            3566789999999999999999885

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.67  E-value=0.0013  Score=46.05  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ...|+++|++|+|||||.+.|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999998743

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.67  E-value=0.0012  Score=52.61  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+.+.+|+||+||||||+..++.-
T Consensus        22 ~~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999998753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.66  E-value=0.0011  Score=47.34  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ....|+|+|++|+|||||.+.|..
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999874

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.66  E-value=0.0016  Score=57.15  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      -++|+||||+|||++++.+++.++..
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~  515 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIE  515 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCC
Confidence            68999999999999999999998744

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.66  E-value=0.0015  Score=51.35  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+++|+|++|+|||||++.+++..+
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcC
Confidence            5899999999999999999998765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.66  E-value=0.0013  Score=46.49  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|+|++|||||||.+.|..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999874

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.66  E-value=0.00098  Score=47.12  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ....|+|+|.+|||||||++.|.
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHh
Confidence            34679999999999999999886

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.66  E-value=0.00084  Score=47.74  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|.+|+|||||++.|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            346799999999999999999873

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.65  E-value=0.00081  Score=52.80  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La   42 (182)
                      ..|+|+|++|||||||.+.|+
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~   39 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLF   39 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            467999999999999999987

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.65  E-value=0.0014  Score=46.91  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+++|++|+|||||.+.+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            4667899999999999999998873

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.65  E-value=0.0011  Score=48.35  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ....|+|+|.+|+|||||++.+..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999875

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.64  E-value=0.0011  Score=53.54  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=22.4

Q ss_pred             CCeEEEE--EcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFV--LGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I--~G~~GsGKSTla~~La~~l   45 (182)
                      .+..++|  +|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4567778  9999999999999998765

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.64  E-value=0.0015  Score=52.83  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++++.++.|.|+||+||||+|..++...
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            4678899999999999999998887653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.64  E-value=0.0011  Score=48.59  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ....|+|+|.+|+|||||++.|..
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            346899999999999999998874

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.64  E-value=0.0011  Score=47.04  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|++.|.+|+|||||.+.+..
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            446799999999999999999875

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.64  E-value=0.0015  Score=53.97  Aligned_cols=27  Identities=15%  Similarity=0.276  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++++.+++|+|+||+||||++..++..
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~  223 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQN  223 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            678899999999999999999888764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.62  E-value=0.0012  Score=48.06  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .+...|+|+|++|||||||.+.+.
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHh
Confidence            345678999999999999999886

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.61  E-value=0.0016  Score=46.68  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .+...|+|+|.+|||||||.+.|.
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            456789999999999999999987

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.61  E-value=0.0017  Score=51.95  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=28.0

Q ss_pred             hhhhhhc-CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           10 KEADATV-TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        10 ~~~~~~~-~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...+..+ -+.++.+++|+|+||+||||++..++...
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3334433 36888999999999999999998887653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.60  E-value=0.0014  Score=46.99  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ....|+|+|++|+|||||++.|..
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhc
Confidence            346789999999999999999875

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.60  E-value=0.0015  Score=45.55  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|+|.+|+|||||.+.|..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            45799999999999999999874

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.60  E-value=0.0014  Score=47.18  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ....|+|+|++|+|||||++.|..
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            345799999999999999999875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.58  E-value=0.0016  Score=47.15  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|.+|||||||.+.|..
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            446899999999999999999874

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.58  E-value=0.0016  Score=49.59  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|||||||.+.|..
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhC
Confidence            4457899999999999999999973

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.57  E-value=0.0014  Score=47.04  Aligned_cols=25  Identities=24%  Similarity=0.118  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...|+|.|.+|+|||||++.|...+
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            4579999999999999998887554

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.56  E-value=0.0018  Score=45.09  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|++.|.+|+|||||.+.+..
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999874

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.56  E-value=0.0014  Score=46.65  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+++|.+|+|||||.+.+..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            45799999999999999998874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.55  E-value=0.0016  Score=46.94  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|+|||||++.+..
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHh
Confidence            3446899999999999999988874

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.54  E-value=0.0016  Score=51.45  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~   52 (182)
                      .+.-++|+|++|+||||++..|.++ |...+..
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d  174 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVAD  174 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence            4678999999999999999999764 6555443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.54  E-value=0.0014  Score=46.37  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ....|+|+|++|+|||||.+.|..
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            346799999999999999998874

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.54  E-value=0.0016  Score=51.16  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .+.-++|+|+||+|||++|+.+++..
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhC
Confidence            34568899999999999999999854

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.54  E-value=0.0007  Score=60.28  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=21.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQC   38 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla   38 (182)
                      +.++|++.+++|||.+|||||||+
T Consensus        30 ~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           30 SVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             EEEEESSSEEEEESSTTSSHHHHH
T ss_pred             eEEecCCCEEEEECCCCCCHHHHH
Confidence            456899999999999999999986

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=96.53  E-value=0.0064  Score=47.31  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..+.+|++.|.-||||.+..+.|.+.++
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ld  100 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMD  100 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcC
Confidence            3578999999999999999999999885

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.52  E-value=0.0015  Score=46.50  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ....|+|+|++|||||||++.|..
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            346799999999999999999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.52  E-value=0.0015  Score=46.61  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|.+|+|||||.+.|..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999873

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.51  E-value=0.0018  Score=55.33  Aligned_cols=26  Identities=31%  Similarity=0.584  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...+++|+|+||+||||+++.+...+
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45789999999999999998888654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.51  E-value=0.00075  Score=60.60  Aligned_cols=24  Identities=38%  Similarity=0.563  Sum_probs=21.9

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQC   38 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla   38 (182)
                      +.++|+.++++|||++||||||||
T Consensus        18 ~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           18 TVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             CCEEETTSEEEEEESTTSSSHHHH
T ss_pred             eeccCCCcEEEEECCCCCcHHHHH
Confidence            556799999999999999999996

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.51  E-value=0.0017  Score=47.12  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ....|+|+|.+|+|||||.+.|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999998753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.51  E-value=0.00097  Score=48.08  Aligned_cols=25  Identities=12%  Similarity=0.198  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ....|+|+|.+|+|||||++.|...
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcC
Confidence            4468999999999999999998854

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.50  E-value=0.0015  Score=59.32  Aligned_cols=21  Identities=29%  Similarity=0.262  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANI   41 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~L   41 (182)
                      +.+++|+||+||||||+++.+
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH
Confidence            689999999999999999987

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.49  E-value=0.0004  Score=61.80  Aligned_cols=28  Identities=32%  Similarity=0.376  Sum_probs=24.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHH-HH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCAN-IV   42 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~-La   42 (182)
                      +++++.+.+++|+|++|||||||++. |+
T Consensus       517 sl~i~~Geiv~I~G~nGSGKSTLl~~~L~  545 (842)
T 2vf7_A          517 DVRFPLGVMTSVTGVSGSGKSTLVSQALV  545 (842)
T ss_dssp             EEEEESSSEEEEECCTTSSHHHHCCCCCH
T ss_pred             eEEEcCCCEEEEEcCCCcCHHHHHHHHHH
Confidence            55678999999999999999999985 54

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.49  E-value=0.0015  Score=47.97  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .....|+|+|.+|+|||||.+.|..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc
Confidence            3346899999999999999998873

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.49  E-value=0.0015  Score=47.17  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|++|+|||||.+.|..
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhc
Confidence            3346899999999999999999874

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.48  E-value=0.0019  Score=50.01  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|+|.||||||||.+.|..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            45799999999999999999984

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.46  E-value=0.002  Score=47.24  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|.+|+|||||.+.|..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~   29 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLT   29 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            446799999999999999999874

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.46  E-value=0.0012  Score=54.24  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      .|+|+|++|||||||.+.|.
T Consensus        33 ~I~lvG~sGaGKSTLln~L~   52 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLF   52 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            47999999999999999998

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.45  E-value=0.0021  Score=47.81  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .+...|+|+|.+|+|||||.+.|.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~   50 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVS   50 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            346789999999999999999887

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.45  E-value=0.0018  Score=49.64  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +.|+|+|.+|||||||.+.|..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g   23 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTN   23 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            3689999999999999999984

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.45  E-value=0.0015  Score=50.04  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|.+|||||||.+.|..
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC
Confidence            346799999999999999999983

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.44  E-value=0.00086  Score=60.32  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.6

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQC   38 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla   38 (182)
                      +.++|+.++++|||++||||||||
T Consensus        38 ~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           38 DVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             EEEEETTSEEEEEESTTSSHHHHH
T ss_pred             eeeccCCcEEEEECCCCCCHHHHH
Confidence            456799999999999999999985

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.42  E-value=0.0023  Score=49.38  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|.+|||||||.+.|..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g   25 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTG   25 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhC
Confidence            356899999999999999999984

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.41  E-value=0.0016  Score=48.05  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHH-HHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCAN-IVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~-La~~l   45 (182)
                      .....|+|+|.+|||||||++. +...+
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4456899999999999999998 54444

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.41  E-value=0.0022  Score=46.51  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=20.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|+|||||.+.+..
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4456899999999999999998774

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.39  E-value=0.0015  Score=46.88  Aligned_cols=24  Identities=17%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|.+|+|||||.+.|..
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~   37 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTD   37 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            346899999999999999999874

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.39  E-value=0.0018  Score=47.10  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .....|+|+|.+|||||||.+.|.
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~   46 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFI   46 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHH
Confidence            445689999999999999999887

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.39  E-value=0.002  Score=46.48  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|+|||||.+.+..
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhc
Confidence            4456899999999999999999875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.38  E-value=0.002  Score=57.49  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.-++|+|+||+||||+++.+++.+
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999887

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.38  E-value=0.00097  Score=54.82  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=24.8

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++.......++|+|+||||||||.+.|+..
T Consensus       151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          151 RLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             eeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            344566778999999999999999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	4e-23
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	1e-21
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-21
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-21
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	3e-21
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	5e-21
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	7e-21
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	1e-19
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	2e-19
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	8e-19
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	5e-18
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	1e-15
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	6e-12
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	1e-11
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	1e-10
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	2e-10
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	4e-10
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	3e-09
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	5e-09
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	1e-08
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	1e-08
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	5e-08
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	8e-07
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	7e-06
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	8e-06
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	1e-04
d1deka_	241	c.37.1.1 (A:) Deoxynucleoside monophosphate kinase	8e-04
d1uf9a_	191	c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo	0.001
d2qy9a2	211	c.37.1.10 (A:285-495) GTPase domain of the signal	0.003

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 88.4 bits (218), Expect = 4e-23
 Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           V +LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS+
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62

Query: 84  VTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMER 139
           +T +L+          + F++DG+PR+ E   A   +      + + VL F  SEE +  
Sbjct: 63  LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122

Query: 140 RILNRNQVRQKLPFSWGVFCLF 161
           R+  R +             ++
Sbjct: 123 RLKGRGRADDTDDVILNRMKVY 144

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 85.4 bits (210), Expect = 1e-21
 Identities = 79/142 (55%), Positives = 100/142 (70%), Gaps = 2/142 (1%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+
Sbjct: 4   SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEE 136
           IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E      ++ +FVLFFDC EE 
Sbjct: 64  IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123

Query: 137 MERRILNRNQVRQKLPFSWGVF 158
           M +R+L R +   +   +    
Sbjct: 124 MTQRLLKRGESSGRSDDNIESI 145

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 84.2 bits (207), Expect = 2e-21
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ   IV  +G  H+S GD+ RA +K G+  G   +  +  G +VP E
Sbjct: 3   LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE 62

Query: 84  VTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           VTI ++++   ++   + FL+DGFPR      A E +       + +    +   +  + 
Sbjct: 63  VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLME 122

Query: 143 NRN 145
              
Sbjct: 123 RLT 125

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 84.2 bits (207), Expect = 2e-21
 Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 2/124 (1%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ   IVE +G  H+S GD+ RA I+ G+E G   ++ + +G +VP E
Sbjct: 3   IVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDE 62

Query: 84  VTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           VTI ++++ + +   ++ FL+DGFPR      A +     +    +    + +  +  ++
Sbjct: 63  VTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQ-LLADMGRKIEHVLNIQVEKEELI 121

Query: 143 NRNQ 146
            R  
Sbjct: 122 ARLT 125

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 83.8 bits (206), Expect = 3e-21
 Identities = 59/139 (42%), Positives = 88/139 (63%), Gaps = 3/139 (2%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           +KK  ++FV+GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G
Sbjct: 5   LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKG 64

Query: 78  KIVPSEVTIKLLQKAMEESGN--DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
           ++VP E  + +L+ AM    +    FLIDG+PR  +    FE     +P  +L+ D   E
Sbjct: 65  QLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKI-GQPTLLLYVDAGPE 123

Query: 136 EMERRILNRNQVRQKLPFS 154
            M +R+L R +   ++  +
Sbjct: 124 TMTKRLLKRGETSGRVDDN 142

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 5e-21
 Identities = 71/147 (48%), Positives = 92/147 (62%), Gaps = 8/147 (5%)

Query: 21  PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKI 79
           P VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+       +I+  IKEGKI
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 60

Query: 80  VPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEA--VTKIEPEFVLFFDC 132
           VP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC
Sbjct: 61  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 120

Query: 133 SEEEMERRILNRNQVRQKLPFSWGVFC 159
           + E    R L R +   +   +     
Sbjct: 121 NNEICIERCLERGKSSGRSDDNRESLE 147

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 82.7 bits (203), Expect = 7e-21
 Identities = 39/123 (31%), Positives = 66/123 (53%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + +LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E
Sbjct: 3   IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
           + I L+++ + +       +         +A       I  ++VL FD  +E +  RI+ 
Sbjct: 63  LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVK 122

Query: 144 RNQ 146
            +Q
Sbjct: 123 DDQ 125

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.0 bits (196), Expect = 1e-19
 Identities = 66/145 (45%), Positives = 96/145 (66%), Gaps = 5/145 (3%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEG 77
            + +V+FVLGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG
Sbjct: 6   DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEG 65

Query: 78  KIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134
           +IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E
Sbjct: 66  QIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPE 124

Query: 135 EEMERRILNRNQVRQKLPFSWGVFC 159
           + M  R+L R +   +   +     
Sbjct: 125 DIMLERLLERGKTSGRSDDNIESIK 149

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 79.1 bits (194), Expect = 2e-19
 Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           +     ++G PGSGKGT  + I +HF   HLS+GDLLR  +  G+E G + +  I +GK+
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           +P +V  +L+   ++      +L+DGFPR      A +   +I  + V+  +   E +++
Sbjct: 65  IPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQ 122

Query: 140 RILNRNQVRQK 150
           R+ +R +   K
Sbjct: 123 RLTDRPETVVK 133

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 77.6 bits (190), Expect = 8e-19
 Identities = 44/129 (34%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
            P  V + G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++G++
Sbjct: 2   DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQL 61

Query: 80  VPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
           VP E+ + ++++ + +    +  +L+DG+PR+     A E   +I P+  +  D  +E +
Sbjct: 62  VPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALE-TLEIRPDTFILLDVPDELL 120

Query: 138 ERRILNRNQ 146
             R++  + 
Sbjct: 121 VERVVFDDT 129

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 75.4 bits (184), Expect = 5e-18
 Identities = 33/126 (26%), Positives = 58/126 (46%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           K     +LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G  ++  +  GK+
Sbjct: 2   KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 61

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           V  E+ ++L++K +E        +         +A        + +  L         + 
Sbjct: 62  VSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS 121

Query: 140 RILNRN 145
            ++ R 
Sbjct: 122 LLIRRI 127

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.8 bits (167), Expect = 1e-15
 Identities = 35/131 (26%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  +
Sbjct: 5   MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDD 64

Query: 84  VTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEME 138
           + + +++  +  +   K  F++DGFPR        + + K      E  +     +E + 
Sbjct: 65  IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLV 124

Query: 139 RRILNRNQVRQ 149
            RI N + +++
Sbjct: 125 ARITNADALKK 135

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 59.6 bits (143), Expect = 6e-12
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 2/160 (1%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           K   + + G   SGK T    I + FG+T+L  G + RA      +N   ++ +     +
Sbjct: 2   KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLAL 61

Query: 80  V-PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEM 137
           +    ++    +   +        I    R  E      A+  I      L     E   
Sbjct: 62  LDQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQ 121

Query: 138 ERRILNRNQVRQKLPFSWGVFCLFIMLSFSSCISIPFSYF 177
           +  I+   +    +        +F++ S        +   
Sbjct: 122 QGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKEN 161

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 58.9 bits (141), Expect = 1e-11
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 75
          V+ + G  G+GKGT C  + E   +  L +G + R    +   +   + +   
Sbjct: 5  VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDA 57

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 54.7 bits (130), Expect = 1e-10
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 7/128 (5%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP 81
           ++  +G PGSGK T     +    G+ +++  D  ++ +              K+ + + 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA---HEERDEYKYTKKKEGIV 60

Query: 82  SEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFE--AVTKIEPEFVLFFDCSEEEME 138
           + +     +  +    + K  +I     N E R A+E  A           FD    E+ 
Sbjct: 61  TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120

Query: 139 RRILNRNQ 146
           +R   R  
Sbjct: 121 KRNSKRGT 128

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 54.7 bits (130), Expect = 2e-10
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 9/131 (6%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +  + G  G GK T C  +      +    GD++   +  G         ++       +
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNIT 63

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE---PEFVLFFDCSEEEMER 139
           ++T+  L         +  ++D     +E  A  + V           +    + EE+ R
Sbjct: 64  DLTVNFLLA------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117

Query: 140 RILNRNQVRQK 150
           R   R +  Q 
Sbjct: 118 RDALRKKDEQM 128

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 4e-10
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 17/128 (13%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PG GK T    +    G  +++ GDL R E      +      ++ E +     
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR----V 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
           V     Q        D    D FP    +              V         +  R+  
Sbjct: 63  VDELDNQMREGGVIVDYHGCDFFPERWFH-------------IVFVLRTDTNVLYERLET 109

Query: 144 RNQVRQKL 151
           R    +KL
Sbjct: 110 RGYNEKKL 117

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 51.9 bits (123), Expect = 3e-09
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 9/136 (6%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENG---TMIQNMI 74
           +  V G PG GK T  A + E           ++ GD + A             M +  +
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 75  KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134
           ++ K +  +    + ++A    G     ID              +       +       
Sbjct: 63  EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 135 EEMERRILNRNQVRQK 150
            E + +I+   Q R  
Sbjct: 122 LEADPKIILSRQKRDT 137

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 50.8 bits (120), Expect = 5e-09
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 14/133 (10%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K   + + G PG+GK +    I     G+ HL  G L++              +   +  
Sbjct: 4   KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEY------DTELDTH 57

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           I+  +   +LL        +          +  +   F    +     V+    S E + 
Sbjct: 58  IIEEKDEDRLLDFMEPIMVSR----GNHVVDYHSSELFP---ERWFHMVVVLHTSTEVLF 110

Query: 139 RRILNRNQVRQKL 151
            R+  R     K 
Sbjct: 111 ERLTKRQYSEAKR 123

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 7/128 (5%)

Query: 17  TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
           T     +  ++G  GSGK    + +        L    L          +G  + +  ++
Sbjct: 2   TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRK 61

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136
             +         +Q+  + S           +        E          ++     + 
Sbjct: 62  PWLQALNDAAFAMQRTNKVSLIV----CSALKKHYRDLLREG---NPNLSFIYLKGDFDV 114

Query: 137 MERRILNR 144
           +E R+  R
Sbjct: 115 IESRLKAR 122

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 13/133 (9%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           VV V G PG G  T     +++       Y  +S G ++    K   EN    ++ +++ 
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK--EENLVSDRDQMRKM 60

Query: 78  KIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIE-----PEFVLFFD 131
                +   K+  + + E +      +D        +     +         P+ ++  +
Sbjct: 61  DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120

Query: 132 CSEEEMERRILNR 144
            + +E+  R ++ 
Sbjct: 121 TTGDEILMRRMSD 133

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 48.0 bits (113), Expect = 5e-08
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 8/140 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS-AGDLLRAEIKSGSENGTMIQNMIKEGK 78
              ++ + G PGSGK T    +    G   +    D L   IK    +G +   + +  +
Sbjct: 3   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK----HGRIDPWLPQSHQ 58

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
                + I               ++DG  R +   A         P   +    +  E  
Sbjct: 59  QNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTA---LARPLHYIVLRTTAAEAI 115

Query: 139 RRILNRNQVRQKLPFSWGVF 158
            R L+R       P      
Sbjct: 116 ERCLDRGGDSLSDPLVVADL 135

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 2/131 (1%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIKSGSENGTMIQNMIK 75
           V+ PT   + G PGSGK +  + I E        +      +             ++++K
Sbjct: 29  VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVK 88

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
                 + +T  ++ +  ++  N      G   +   + A     K     +      + 
Sbjct: 89  HVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI 148

Query: 136 EMERRILNRNQ 146
                 + R +
Sbjct: 149 NSYLGTIERYE 159

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.3 bits (98), Expect = 7e-06
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 21  PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS----AGDLLRAEIKSGSENGTMIQNMIKE 76
           PT++ ++G P  GK      +  +  +  +          R ++    ++        +E
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 77  GKIVPSEVTIKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS 133
           G  +  +  +  L        E G    + D      E RA      +       F +  
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121

Query: 134 EEEMERRILNRNQVRQKLPFSWG 156
             + E    N  QV+   P    
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVN 144

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 9/133 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
              ++ + GG  +GK      +       +      D L   +    ++         +G
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG-VDSLIEAMPLKMQSAEGGIEFDADG 60

Query: 78  KIVPSEVTIKLLQ------KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD 131
            +        L         AM  +G    + D F      +  + +         +   
Sbjct: 61  GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120

Query: 132 CSEEEMERRILNR 144
           C     E R   R
Sbjct: 121 CDGAVAEGRETAR 133

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 26/139 (18%)

Query: 13  DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQN 72
            +++    P VV  +G PG+GK T     +   GY H++   L   +             
Sbjct: 6   SSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQR------------ 53

Query: 73  MIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF-FD 131
                        +   Q A+ + G    + +  P         +           F F 
Sbjct: 54  ------------CVSSCQAALRQ-GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFC 100

Query: 132 CSEEEMERRILNRNQVRQK 150
            + E+       R      
Sbjct: 101 ATIEQARHNNRFREMTDPS 119

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 9/98 (9%), Positives = 27/98 (27%), Gaps = 6/98 (6%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++F+ G   SGK T    I+ ++          ++  +           +     +    
Sbjct: 3   LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFE 62

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
            +          E+  +   ++     E+        +
Sbjct: 63  GIDYD------RETNLNLTKLEVITIMEQAFCYLNGKS 94

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 5/135 (3%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K P ++ + G  GSGK T  A ++  +GY  L    L         EN       +    
Sbjct: 1   KHPIIIGITGNIGSGKST-VAALLRSWGYPVLDLDAL----AARARENKEEELKRLFPEA 55

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           +V   +  + L + +         ++     E  R   E ++++E   V        E  
Sbjct: 56  VVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG 115

Query: 139 RRILNRNQVRQKLPF 153
                   +    P 
Sbjct: 116 WEGRLHGTLLVAAPL 130

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTM-------IQ 71
           K P V+ ++G  G GK T    +   F     S         ++ +            I 
Sbjct: 7   KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP 66

Query: 72  NMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
            + +      + V    +Q A      D  + D   R +      E + KI
Sbjct: 67  VIAQHTGADSASVIFDAIQAAKAR-NIDVLIADTAGRLQNKSHLMEELKKI 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.91
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.89
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.88
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.87
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.87
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.87
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.87
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.86
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.86
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.85
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.83
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.8
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.61
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.6
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.59
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.59
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.58
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.56
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.52
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.51
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.51
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.45
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.45
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.42
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.4
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.4
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.37
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.33
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.33
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.32
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.31
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.25
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.21
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.2
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.19
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.18
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.16
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.15
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.09
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.08
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.07
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.06
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.06
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.04
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.04
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.02
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.02
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	99.01
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.01
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.96
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	98.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.92
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.92
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.92
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.91
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.91
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.91
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.9
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.89
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.88
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.87
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.87
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.87
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.86
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.86
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.82
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.8
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.79
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.76
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.73
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.67
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.65
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.57
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.53
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.5
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.43
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.35
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.34
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.27
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.24
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.19
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.15
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.14
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.14
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.13
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.11
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.11
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.08
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.07
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.93
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.92
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.92
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.88
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.79
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.79
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.79
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.78
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.75
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.69
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.68
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.68
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.65
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.63
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.61
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.61
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.6
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.58
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.58
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.56
d1okkd2	207	GTPase domain of the signal recognition particle r	97.56
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.55
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.54
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.53
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.47
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.38
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.33
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.32
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.3
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.29
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.29
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.23
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.21
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.19
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.17
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.16
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.13
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.12
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.12
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.11
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.08
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.06
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.06
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.05
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.03
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.02
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.02
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.02
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.99
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.98
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.96
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.96
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.93
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.91
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.91
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.9
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.88
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.86
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.83
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.82
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.82
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.77
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.75
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.74
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.72
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.71
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.71
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.7
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.69
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.68
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.67
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.65
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.64
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.61
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.61
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.59
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.57
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.57
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.55
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.52
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.52
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.51
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.51
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.49
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.49
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.48
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.48
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.44
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.42
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.42
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.42
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.42
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.41
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.37
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.36
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.34
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.34
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.33
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.32
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.31
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.31
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.3
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.3
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.27
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.26
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.24
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.21
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.18
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.14
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.01
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.01
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.0
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.9
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.86
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.83
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.8
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.77
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.67
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.67
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.64
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.62
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.62
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.59
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.59
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.58
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.58
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.5
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.48
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.46
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	95.37
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.3
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.2
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.94
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.93
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.89
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.78
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.76
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.73
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	94.63
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.57
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.56
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.51
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.33
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.3
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	94.18
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.13
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.06
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.93
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.53
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.53
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.51
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.42
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.0
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.95
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.26
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	92.12
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	91.99
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	91.98
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.87
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.78
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.53
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.06
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.77
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	90.49
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.37
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.24
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	90.18
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	90.16
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.97
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	89.91
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	89.83
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	89.77
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	89.4
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.28
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	87.82
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	87.45
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	86.45
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	86.3
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.29
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.36
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	83.35
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	82.71
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	81.49

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.91  E-value=1.7e-22  Score=148.69  Aligned_cols=129  Identities=61%  Similarity=1.051  Sum_probs=114.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   97 (182)
                      ..+|.+|+|.|||||||||+|+.|+++||+.+++.++++++........+...+.+...+...++.....++........
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQ   82 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTST
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhh
Confidence            35778999999999999999999999999999999999999998888889999999999999999888888888777766


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      ..++++||+|....+...+....  ...|+++|+|++|.+.+.+|+.+|..
T Consensus        83 ~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~  133 (194)
T d1qf9a_          83 GKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE  133 (194)
T ss_dssp             TCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             cCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhcc
Confidence            78899999999999988876654  33588999999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.89  E-value=2.8e-22  Score=147.46  Aligned_cols=125  Identities=31%  Similarity=0.608  Sum_probs=113.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (182)
                      .+.+.|+|.|||||||||+|+.|+++||+.+++.|+++++........+...++.+..+...+++....++.+.+.....
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~   83 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLTQ   83 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhhh
Confidence            45568899999999999999999999999999999999999998888999999999999999999999999998887777


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .++|+||||+...|...+....  .++.+|+|++|.+.+.+|+..|.
T Consensus        84 ~~~ildGfPr~~~q~~~l~~~~--~~~~vi~L~v~~~~l~~R~~~r~  128 (189)
T d2ak3a1          84 YNWLLDGFPRTLPQAEALDRAY--QIDTVINLNVPFEVIKQRLTDRP  128 (189)
T ss_dssp             SCEEEESCCCSHHHHHHHHTTC--CCCEEEEEECCHHHHHHHHTGSH
T ss_pred             cCcccccccchhhHHHHhhhcC--cceEEEEEeccchhhhhhcccch
Confidence            8899999999999998886543  57899999999999999998774

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.88  E-value=3.8e-21  Score=140.98  Aligned_cols=129  Identities=34%  Similarity=0.594  Sum_probs=114.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SG   97 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~   97 (182)
                      |++..|+|.|||||||||+|+.||++||+.+++.++++++....+...+......+..+...+++.+..++...+.. ..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~   80 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   80 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccc
Confidence            46778889999999999999999999999999999999999888899999999999999999999999888887765 33


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhcc
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQV  147 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~~  147 (182)
                      ..+++++|||+...|...+....   ...+.+++++++|.+.+.+|+..|...
T Consensus        81 ~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~  133 (190)
T d1ak2a1          81 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH  133 (190)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred             cCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCC
Confidence            57899999999999998886653   456789999999999999999998543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.4e-20  Score=137.29  Aligned_cols=129  Identities=51%  Similarity=0.949  Sum_probs=109.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   95 (182)
                      .+++.++|+|.|||||||||+|+.|+++||+.+++.+++++..... ....+..+.+....+...++......+...+..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   83 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD   83 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHh
Confidence            4566789999999999999999999999999999999999887654 467788888888999888888877777665544


Q ss_pred             ---cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           96 ---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        96 ---~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                         ....+++++++|....|+..+..... .++.++++++|.+.+.+|+..|..
T Consensus        84 ~~~~~~~~~vl~g~p~~~~q~~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~~~~  136 (196)
T d1ukza_          84 NVKANKHKFLIDGFPRKMDQAISFERDIV-ESKFILFFDCPEDIMLERLLERGK  136 (196)
T ss_dssp             HHHTTCCEEEEETCCCSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             hhccCCCceeeeccchhHHHHHHHHHhcc-ccceeeccCCCHHHHHHHHHhccc
Confidence               34578999999999999988877654 588999999999999999998763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.5e-21  Score=140.65  Aligned_cols=123  Identities=37%  Similarity=0.678  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~  100 (182)
                      +.|+|.|||||||||+|+.|++++|+.+++.+++++.........+..+.+.+..+...+++.+..++.+.+... ...+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            368899999999999999999999999999999999998888888888889999999999999988888776542 3468


Q ss_pred             EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ++++++|+...+...+... +..|+++|+|++|.+++.+|+.+|+
T Consensus        81 ~i~~g~pr~~~~~~~~~~~-~~~~~~vi~L~~~~~~l~~R~~~~~  124 (179)
T d1e4va1          81 FLLDGFPRTIPQADAMKEA-GINVDYVLEFDVPDELIVDRIVKDD  124 (179)
T ss_dssp             EEEESCCCSHHHHHHHHHT-TCCCSEEEEEECCHHHHHHHHHTTC
T ss_pred             eeecccccchHHhhhhhhc-cCCceEEEEeccchhhhhhhhcccc
Confidence            9999999999998887654 4579999999999999999998763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=7.2e-21  Score=138.44  Aligned_cols=123  Identities=33%  Similarity=0.629  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~  100 (182)
                      +.|+|.|||||||||+|+.|+++||+.+++.+++++.........+..+.+.+..+...+.+....++.+.+... ...+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            368999999999999999999999999999999999998888888899999999999999999999988877653 3568


Q ss_pred             EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176          101 FLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      +++|++|....+...+....   ...|++++++++|.+.+.+|+..|
T Consensus        81 ~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r  127 (181)
T d2cdna1          81 FILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR  127 (181)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH
T ss_pred             EEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccc
Confidence            99999999988888776543   557899999999999999999988

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-20  Score=136.88  Aligned_cols=126  Identities=58%  Similarity=1.010  Sum_probs=108.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE----   95 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----   95 (182)
                      |++|+|.|||||||||+|+.|+++||+.++++++++++.... ....+..+...+..+...++.....++...+..    
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            689999999999999999999999999999999999988764 456778888889999999999888888776644    


Q ss_pred             -cCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           96 -SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        96 -~~~~~~ildg~~~~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                       ....++++++||+...|...+....  ...++.+++++++.+.+.+|+.+|..
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~  134 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  134 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCC
Confidence             2457899999999999988887765  33467889999999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.86  E-value=1.4e-20  Score=138.47  Aligned_cols=132  Identities=45%  Similarity=0.862  Sum_probs=116.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--   96 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--   96 (182)
                      .++++|+|.|||||||||+|+.|+++||+.+++.++++++........+....+.+..+...+++.+..++.+.+...  
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   85 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVD   85 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhccc
Confidence            467899999999999999999999999999999999999999999999999999999999999999999998888663  


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh--ccCCCC
Q 030176           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN--QVRQKL  151 (182)
Q Consensus        97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~--~~r~~~  151 (182)
                      ...++++||||+...|...+..... .+..+++++++.+.+.+|...|.  ..|.++
T Consensus        86 ~~~g~ildg~pr~~~qa~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d  141 (194)
T d3adka_          86 TSKGFLIDGYPREVKQGEEFERKIG-QPTLLLYVDAGPETMTKRLLKRGETSGRVDD  141 (194)
T ss_dssp             TCSCEEEESCCSSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHHHHHHHHTCCCC
T ss_pred             ccccceeeeccchhHHHHHHHHHhC-CccchhccccchhhhHhHhhhhcccccCCcc
Confidence            3568999999999999999977664 47789999999999999988775  344444

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.6e-20  Score=135.48  Aligned_cols=124  Identities=27%  Similarity=0.576  Sum_probs=109.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GND   99 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~   99 (182)
                      +.|+|.|||||||||+|+.|+++||+.+++.+++++.........+..+++.+..+...+.+.....+...+...  ...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKN   82 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccC
Confidence            568889999999999999999999999999999999999999999999999999999999999888887777653  356


Q ss_pred             cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       100 ~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ++++|++|....|...+...   .+..|+++|+|++|.+.+.+|+..|.
T Consensus        83 g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~  131 (180)
T d1akya1          83 GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNAD  131 (180)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHH
T ss_pred             CEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccc
Confidence            89999999999888776554   35679999999999999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.85  E-value=4.9e-20  Score=134.92  Aligned_cols=125  Identities=35%  Similarity=0.729  Sum_probs=105.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SG   97 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~   97 (182)
                      .|+.|+|.|||||||||+|+.|+++||+.+++.++++++.............+.+..+...+.......+......  ..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   81 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   81 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccc
Confidence            4678999999999999999999999999999999999999998888888888888999888887766665544433  12


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+++++++|+...|...+.. ....|+.+|+|++|.+.+.+|+..|.
T Consensus        82 ~~~~vid~~~~~~~q~~~l~~-~~~~p~~~i~L~~~~e~l~~R~~~~~  128 (189)
T d1zaka1          82 ENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVFDD  128 (189)
T ss_dssp             HTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTTC
T ss_pred             cCcEEeeccchhhHHHhhhhh-cccccchheeechhhhhhhhhccccc
Confidence            357899999999999888854 44568999999999999999997663

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.83  E-value=4.4e-19  Score=129.01  Aligned_cols=123  Identities=35%  Similarity=0.658  Sum_probs=107.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~  100 (182)
                      +.|+|.|||||||||+|+.|+++||+.+++.+++++.......+.+..+++.+.++...++.....++...+.. ....+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~   80 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccc
Confidence            36899999999999999999999999999999999999888888999999999999999999998888887755 33568


Q ss_pred             EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176          101 FLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      ++++++|+...+...+.+..   ...+.++++++++.+.+.+|+..+
T Consensus        81 ~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~  127 (182)
T d1s3ga1          81 FLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD  127 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT
T ss_pred             eeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc
Confidence            99999999999988876643   445678889999999999998755

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.80  E-value=2.8e-18  Score=124.17  Aligned_cols=123  Identities=32%  Similarity=0.643  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDK  100 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~  100 (182)
                      +.|+|.|||||||||+|+.|+++||+.+++.+++++.........+..+++.+..+...++.....++.+.... ....+
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcC
Confidence            35899999999999999999999999999999999999888888999999999999999999888888777654 23568


Q ss_pred             EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176          101 FLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      ++++++|....+...+....   ...++.+++++++.+.+.+|+..|
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~  127 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD  127 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT
T ss_pred             cccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc
Confidence            89999999988777665553   456889999999999999999866

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.9e-14  Score=103.53  Aligned_cols=118  Identities=21%  Similarity=0.252  Sum_probs=83.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   97 (182)
                      .++|.+|+++|+|||||||+++.+++.+++.+++.|++...                        ......+...+..  
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~~--   64 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAALRQ--   64 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHHHHT--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHHHHC--
Confidence            46788999999999999999999999999999999776321                        1233444555544  


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhhccCCC-CCcchHHHHHHH
Q 030176           98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQVRQK-LPFSWGVFCLFI  162 (182)
Q Consensus        98 ~~~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~-~~~~~~~~~~~~  162 (182)
                      +..+|+|.......++..+...   .+... .+|++++|.+++++|...|...... .......+..+.
T Consensus        65 g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~-~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~  132 (172)
T d1yj5a2          65 GKRVVIDNTNPDVPSRARYIQCAKDAGVPC-RCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYR  132 (172)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHHHHHHTCCE-EEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHH
T ss_pred             CCCceeeCcCCCHHHHHHHHHHHHhcCCCE-EEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHH
Confidence            5678899877776666665443   44433 5788999999999999999643222 234444555443

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.60  E-value=2.8e-15  Score=104.91  Aligned_cols=121  Identities=16%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH-hCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGN   98 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~-lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~   98 (182)
                      .++|+|+|+|||||||+|+.|.+. .++.+++.+++...................   .....+.....+...+.. ...
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   78 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKK---EGIVTGMQFDTAKSILYGGDSV   78 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHH---HHHHHHHHHHHHHHHHTSCSSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhh---hHHHHHHHHHHHHHHHHhhccC
Confidence            467899999999999999988755 578889998886655443221110000000   000012222333333333 234


Q ss_pred             CcEEEeCCCCCHHHHHHH---HHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           99 DKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        99 ~~~ildg~~~~~~q~~~l---~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ..+|+|+.......+..+   .+..+. +..+|++++|.+++.+|..+|+
T Consensus        79 ~~vi~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~e~~~~R~~~R~  127 (152)
T d1ly1a_          79 KGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRG  127 (152)
T ss_dssp             CEEEECSCCCSHHHHHHHHHHHHHHTC-EEEEEECCCCHHHHHHHHTTCG
T ss_pred             CCcccccccCCHHHHHHHHHhhhhhcc-chhhhhcCCCHHHHHHHHHccC
Confidence            567888765554544433   334443 4468889999999999999884

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.59  E-value=3.9e-15  Score=106.69  Aligned_cols=111  Identities=18%  Similarity=0.279  Sum_probs=67.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~  101 (182)
                      .|+|+|+|||||||+++.||+++|+++++.|+++.+..+.  .....+..   .+.    +...+...+.+.. .....+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~g~--~i~ei~~~---~g~----~~~~~~~~~~l~~~~~~~~~   74 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGM--TVADVVAA---EGW----PGFRRRESEALQAVATPNRV   74 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCS--CHHHHHHH---HHH----HHHHHHHHHHHHHHCCSSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhhhh--hhhhhhcc---cch----HHHHHHHHHHHHhhccccce
Confidence            3678899999999999999999999999999987655322  12111111   111    1112222222222 222333


Q ss_pred             EEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhcc
Q 030176          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQV  147 (182)
Q Consensus       102 ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~  147 (182)
                      +..+  .+.....+..+...     ..+|||++|.+.+.+|+..|...
T Consensus        75 ~~~~~~~~~~~~~~~~l~~~-----~~~v~L~~~~e~l~~Rl~~~~~~  117 (170)
T d1e6ca_          75 VATGGGMVLLEQNRQFMRAH-----GTVVYLFAPAEELALRLQASLQA  117 (170)
T ss_dssp             EECCTTGGGSHHHHHHHHHH-----SEEEEEECCHHHHHHHHHHHHCS
T ss_pred             ecccccchhhhHHHHhhhcc-----ceeEEEecCchhHHHHHhhcccc
Confidence            3332  33334444444332     36899999999999999877543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.59  E-value=1.2e-15  Score=108.31  Aligned_cols=136  Identities=15%  Similarity=0.134  Sum_probs=76.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  100 (182)
                      .++|+|+|||||||||+|+.|++.++..++..+|.++...............    ............+...+.  .+..
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~   75 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDE----LLALTWKNITDLTVNFLL--AQND   75 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHH----HHHHHHHHHHHHHHHHHH--TTCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHH----HHHHHHHHHHHHHHHHHh--cCCC
Confidence            3689999999999999999999999987766666655443321110000000    000001122223333332  3567


Q ss_pred             EEEeCCCCCHHHHHHHH---HHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176          101 FLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI  162 (182)
Q Consensus       101 ~ildg~~~~~~q~~~l~---~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~  162 (182)
                      +++|+............   ......+..+++|++|.+++.+|+.+|...........+.++++.
T Consensus        76 ~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~  140 (176)
T d2bdta1          76 VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFE  140 (176)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            78888655433332222   222333456889999999999999998544433344455555543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.58  E-value=3.7e-15  Score=106.28  Aligned_cols=112  Identities=19%  Similarity=0.240  Sum_probs=70.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--   95 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--   95 (182)
                      |++..|+|+|+|||||||+|+.|+++|+ +.+++.+++............       ..+...........+.+.+..  
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i   75 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDT-------ELDTHIIEEKDEDRLLDFMEPIM   75 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHHH-------hhcccchHHHHHHHHHHHHHhhh
Confidence            6788999999999999999999999996 566666665554322211111       112223333333333333322  


Q ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ......+++++.....+        ...++.+|||++|.+++.+|+.+|.
T Consensus        76 ~~~~~~~~~~~~~~~~~--------~~~~~~vI~L~~~~e~l~~Rl~~R~  117 (174)
T d1y63a_          76 VSRGNHVVDYHSSELFP--------ERWFHMVVVLHTSTEVLFERLTKRQ  117 (174)
T ss_dssp             TSSSEEEEECSCCTTSC--------GGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             hhcccccccHHHHHHHH--------HhcCceEEEEECCHHHHHHHHHhCC
Confidence            23456778876553211        1135688999999999999999885

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=8.1e-14  Score=98.95  Aligned_cols=113  Identities=13%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH-------HHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV-------TIKLLQK   91 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~   91 (182)
                      ..+++++|+|+|||||||+++.|++.+++.+++.+++.......          ....+.......       +...+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIE----------KMASGEPLNDDDRKPWLQALNDAAFA   73 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHH----------HHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhh----------hhccCcceehhhhHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999988764443221          011112222111       1112222


Q ss_pred             HHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        92 ~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+..  ...++++........+..+ .... .+..+|||++|.+++.+|+.+|.
T Consensus        74 ~~~~--~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~l~~~~e~~~~Rl~~R~  123 (171)
T d1knqa_          74 MQRT--NKVSLIVCSALKKHYRDLL-REGN-PNLSFIYLKGDFDVIESRLKARK  123 (171)
T ss_dssp             HHHH--CSEEEEECCCCSHHHHHHH-HTTC-TTEEEEEEECCHHHHHHHHHTST
T ss_pred             HHhc--cCceEeeccchHHHHHHHH-HHhC-CCceEEeecCCHHHHHHHHHhCc
Confidence            2222  3344444433334444333 3332 35678899999999999999873

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=5.6e-14  Score=102.17  Aligned_cols=129  Identities=19%  Similarity=0.155  Sum_probs=75.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH--------------
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT--------------   85 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------   85 (182)
                      .|.+|+|+|++||||||+|+.| +++|+.+++.|++.+...................+..+....+              
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            5789999999999999999988 6799999999988776554322111100000000011111111              


Q ss_pred             --------HHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHH
Q 030176           86 --------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGV  157 (182)
Q Consensus        86 --------~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~  157 (182)
                              ...+...........+++++.......       .....|.+|++++|.+.+.+|+.+|+      ..+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~~-------~~~~~d~vI~v~a~~e~r~~Rl~~R~------~~~~~~  147 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG-------WEGRLHGTLLVAAPLEERVRRVMARS------GLSREE  147 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT-------CGGGSSEEEEECCCHHHHHHHHHTTT------CCTTHH
T ss_pred             hhhhhHHHHHHHHhhhhhcccceEEEEeecccccc-------ccccceeEEEEecchhhHHHHHHhcc------cchHHH
Confidence                    111111222234556677764322111       11236889999999999999999883      344556


Q ss_pred             HHHHH
Q 030176          158 FCLFI  162 (182)
Q Consensus       158 ~~~~~  162 (182)
                      +...+
T Consensus       148 ~~~~~  152 (191)
T d1uf9a_         148 VLARE  152 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.51  E-value=1.2e-14  Score=103.18  Aligned_cols=108  Identities=19%  Similarity=0.260  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      +.|+|+|+|||||||+|+.|+++||+.+++.+++++..........      .........+.....+......   .+.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~   75 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDE------EYDCPILDEDRVVDELDNQMRE---GGV   75 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCS------SSSCCCBCHHHHHHHHHHHHHH---CCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhH------HhhhhhHHHHHHHHHhhhhhhc---CCc
Confidence            4588999999999999999999999999999998876432211000      0112223334344444333322   234


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus       102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      ..+++....     +..   ...+.+|||++|.+.+.+|+.+|..
T Consensus        76 ~~~~~~~~~-----~~~---~~~~~~i~l~~~~~~~~~Rl~~r~~  112 (173)
T d1rkba_          76 IVDYHGCDF-----FPE---RWFHIVFVLRTDTNVLYERLETRGY  112 (173)
T ss_dssp             EEECSCCTT-----SCG---GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             ccchhHHHH-----HHH---hcCCCcceecCCHHHHHHHHHhcCC
Confidence            455543321     001   1256789999999999999999853

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.51  E-value=7.4e-15  Score=104.49  Aligned_cols=108  Identities=13%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~il  103 (182)
                      |+|+|+|||||||+++.||+++|+.+++.|+++.+..+.  ........   .+.....+ ....+...+.. ....++.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g~--~i~~~~~~---~g~~~~r~-~e~~v~~~l~~-~~~~v~~   75 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQ--KVSEIFEQ---KRENFFRE-QEQKMADFFSS-CEKACIA   75 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTS--CHHHHHHH---HCHHHHHH-HHHHHHHHHTT-CCSEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHhh--hhhhHHHh---hhhccchh-hhhhhchhhhh-ccccccc
Confidence            788899999999999999999999999999987665432  12221111   11111111 11222223222 2223333


Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          104 DGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       104 dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+-  .......+     ...+++|||++|.+++.+|+..|.
T Consensus        76 ~~g--~~~~~~~l-----~~~~~vI~L~~s~~~l~~Rl~~~~  110 (161)
T d1viaa_          76 TGG--GFVNVSNL-----EKAGFCIYLKADFEYLKKRLDKDE  110 (161)
T ss_dssp             CCT--TGGGSTTG-----GGGCEEEEEECCHHHHTTCCCGGG
T ss_pred             ccc--chhhHHHH-----HhCCeEEEeccchHHHHHHHcccc
Confidence            221  11111111     124589999999999999997765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=5.4e-13  Score=94.80  Aligned_cols=109  Identities=20%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~il  103 (182)
                      |+|+|+|||||||+++.||+++|+++++.|+++.+..+.  ........   .+.....+...+.+...+...  ..++.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g~--~i~~~~~~---~g~~~~r~~e~~~~~~~~~~~--~~vi~   76 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR--SIADIFAT---DGEQEFRRIEEDVVRAALADH--DGVLS   76 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSS--CHHHHHHH---HCHHHHHHHHHHHHHHHHHHC--CSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhhh--hhhhhhhh---hhHHHHHHHHhhhhhhccccc--ccccc
Confidence            566799999999999999999999999999887655432  12111111   122222233344455555442  34444


Q ss_pred             eCC--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          104 DGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       104 dg~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .+-  ......+..    .  ....+|||+++.+.+.+|+..+.
T Consensus        77 ~gg~~~~~~~~~~~----l--~~~~~I~L~~~~~~~~~R~~~~~  114 (165)
T d2iyva1          77 LGGGAVTSPGVRAA----L--AGHTVVYLEISAAEGVRRTGGNT  114 (165)
T ss_dssp             CCTTGGGSHHHHHH----H--TTSCEEEEECCHHHHHHHTTCCC
T ss_pred             cccccccccccccc----c--cccceeeeeccchhhhhcccccc
Confidence            432  222322222    2  23467889999999999997553

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=5e-13  Score=98.42  Aligned_cols=127  Identities=17%  Similarity=0.099  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCC-----CCHHH------------
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VPSEV------------   84 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~------------   84 (182)
                      .+|+|||++||||||+|+.| +++|+++++.|++.++....+......+.+.......     +....            
T Consensus         3 ~iIgITG~igSGKStv~~~l-~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~   81 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLF-TDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHH-HTTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH-HHCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhhh
Confidence            57999999999999999987 5799999999999888766554433333222111111     11111            


Q ss_pred             ------HHHH----HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcc
Q 030176           85 ------TIKL----LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFS  154 (182)
Q Consensus        85 ------~~~~----l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~  154 (182)
                            +...    +...........++++.. ...+      .......|.+|++++|.+.+++|+.+|+      ..+
T Consensus        82 ~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~~-ll~e------~~~~~~~d~ii~v~~~~~~r~~R~~~R~------~~s  148 (205)
T d1jjva_          82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVP-LLIE------NKLTALCDRILVVDVSPQTQLARSAQRD------NNN  148 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECT-TTTT------TTCGGGCSEEEEEECCHHHHHHHHC-----------C
T ss_pred             hHhhcccCHHHHHHHHHHHhhccCCeEEEEec-cccc------cchhhhhhheeeecchHHHHHHHHHhcC------Cch
Confidence                  1111    111112223345666652 2111      1111235789999999999999999883      455


Q ss_pred             hHHHHHHH
Q 030176          155 WGVFCLFI  162 (182)
Q Consensus       155 ~~~~~~~~  162 (182)
                      .+++...+
T Consensus       149 ~e~~~~~~  156 (205)
T d1jjva_         149 FEQIQRIM  156 (205)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666655

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.42  E-value=3.9e-13  Score=95.43  Aligned_cols=124  Identities=11%  Similarity=0.105  Sum_probs=65.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcCChhhHHHHHHHHcCCCC--CH--HHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKIV--PS--EVTIKLLQKAM   93 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~--~~~di~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~l~~~l   93 (182)
                      ..++|+|+|+|||||||+|+.|++.++...+  +.+.+ ............ .......+...  ..  ......+....
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL-IEAMPLKMQSAE-GGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH-HHHSCGGGGTST-TSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchh-hccccccccchh-HHhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999996654  44333 222111000000 00000000000  00  11112222211


Q ss_pred             H--hcCCCcEEEeC-CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           94 E--ESGNDKFLIDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        94 ~--~~~~~~~ildg-~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      .  ......++++. +....................+|+|++|.+++.+|+..|.
T Consensus        80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~  134 (178)
T d1qhxa_          80 VAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcC
Confidence            1  12234455554 4344333334444444445678999999999999999884

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.40  E-value=1.9e-13  Score=97.22  Aligned_cols=119  Identities=20%  Similarity=0.247  Sum_probs=66.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH-HHHHHHHHHcCC-hhhH-HHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-GDLLRAEIKSGS-ENGT-MIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~-~di~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~   95 (182)
                      +.+++|+|+|+|||||||+|+.|++++|..++.. +|.++....... .... ...+..    ..........+...+  
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--   75 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQN----RMIMQIAADVAGRYA--   75 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHH----HHHHHHHHHHHHHHH--
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHH----HHHHHHHHHHHHHHH--
Confidence            3578999999999999999999999999776543 233333322110 0000 000000    000011111222222  


Q ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (182)
Q Consensus        96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~  146 (182)
                      .....+|+++..... +...+..  ...+..++||+++.+++.+|+.+|..
T Consensus        76 ~~~~~vi~~~~~~~~-~~~~~~~--~~~~~~~i~l~~~~e~~~~R~~~R~~  123 (176)
T d1zp6a1          76 KEGYFVILDGVVRPD-WLPAFTA--LARPLHYIVLRTTAAEAIERCLDRGG  123 (176)
T ss_dssp             HTSCEEEECSCCCTT-TTHHHHT--TCSCEEEEEEECCHHHHHHHHHTTCT
T ss_pred             hcCCCeEecccccHH-HHHHHHh--cccccccccCCCCHHHHHHHHHhCCC
Confidence            234567788754432 1222221  12355788899999999999998853

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.40  E-value=7.7e-12  Score=89.23  Aligned_cols=117  Identities=15%  Similarity=0.248  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH---HHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV---TIKLLQKAM   93 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l   93 (182)
                      ++|+|+|+|||||||+++.|++.|+     ...+..++..+...........     ...-.......   ....+...+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD-----RDQMRKMDPETQKRIQKMAGRKI   76 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSS-----GGGGSSCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhh-----hhhhhhhhchhhHHHHHHHHHHH
Confidence            6899999999999999999999884     3455667776665542211000     00000111111   111111111


Q ss_pred             H-hcCCCcEEEeCCCCCHHH-------HHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           94 E-ESGNDKFLIDGFPRNEEN-------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        94 ~-~~~~~~~ildg~~~~~~q-------~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      . ......+++|+++....+       .......  ..|+.+|||+++++++.+|+.+|.
T Consensus        77 ~~~~~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~~~~R~~~~~  134 (190)
T d1khta_          77 AEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE--LNPDLIIVVETTGDEILMRRMSDE  134 (190)
T ss_dssp             HHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHTSS
T ss_pred             HHHhCCCeEEECCcccchHHHHHHHhhhhhhhhh--ccccceeeecCCHHHHHHHHHHhc
Confidence            1 133567888886542100       0011111  148899999999999999998865

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.37  E-value=2.8e-12  Score=91.99  Aligned_cols=117  Identities=16%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH-------HHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-------EVTIKLL   89 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l   89 (182)
                      ++|+|+|+|||||||+++.|++.|+     +..++.++..+.............     .....+.       ......+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~   76 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRD-----EMRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHH-----HHTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhh-----hccccchhhcccCHHHHHHHH
Confidence            5789999999999999999999885     335666776665544321110000     0011111       1111222


Q ss_pred             HHHHHhcCCCcEEEeCCCCCHHH-------HHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           90 QKAMEESGNDKFLIDGFPRNEEN-------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        90 ~~~l~~~~~~~~ildg~~~~~~q-------~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      ...........++++++.....+       ...+....  .|+.+|||++|.+++.+|+.+|.
T Consensus        77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~R~~~r~  137 (194)
T d1nksa_          77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI--NPSVIFLLEADPKIILSRQKRDT  137 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHHCT
T ss_pred             HHHHHHhCCCcEEEEccCchHHHHHHHHhHHHHHHhhh--ccccceEEecCHHHHHHHHHHhh
Confidence            23333344556667754321000       00111111  58899999999999999999876

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=3.6e-11  Score=88.31  Aligned_cols=115  Identities=17%  Similarity=0.314  Sum_probs=65.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---CCcEe---------cHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH----
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHL---------SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE----   83 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~---------~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   83 (182)
                      ++++|+|.|+.||||||+++.|++.|   |+..+         ..++.+++.........         .......    
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~---------~~~~~~~~~~~   71 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG---------DEVITDKAEVL   71 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTT---------TCCCCHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhcccccc---------ccccchHHHHH
Confidence            47899999999999999999999876   44322         12333333322110000         0011110    


Q ss_pred             --------HHHHHHHHHHHhcCCCcEEEeCCCC------------CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHH
Q 030176           84 --------VTIKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRI  141 (182)
Q Consensus        84 --------~~~~~l~~~l~~~~~~~~ildg~~~------------~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~  141 (182)
                              .....+...+  ..+..+|.|.+..            .......+....  ...||++||||+|++++.+|+
T Consensus        72 l~~~~~~~~~~~~i~~~l--~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri  149 (210)
T d4tmka_          72 MFYAARVQLVETVIKPAL--ANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRA  149 (210)
T ss_dssp             HHHHHHHHHHHHTHHHHH--HTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH--HcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHh
Confidence                    0111122222  2356777786421            122222222222  346999999999999999999


Q ss_pred             Hhhh
Q 030176          142 LNRN  145 (182)
Q Consensus       142 ~~R~  145 (182)
                      .+|.
T Consensus       150 ~~R~  153 (210)
T d4tmka_         150 RARG  153 (210)
T ss_dssp             HHHS
T ss_pred             hhcc
Confidence            9984

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1e-11  Score=91.47  Aligned_cols=127  Identities=19%  Similarity=0.201  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-----CCCCCHHHHH----------
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVTI----------   86 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------   86 (182)
                      -+|+|||++||||||+|+.| +++|+.+++.|.+.+............+.+....     +.......+.          
T Consensus         4 ~iIgitG~igSGKStv~~~l-~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAF-ADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHH-HHCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            48999999999999999987 5889999999999887766544332222221111     1112211111          


Q ss_pred             --------HHHHHHH----HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcc
Q 030176           87 --------KLLQKAM----EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFS  154 (182)
Q Consensus        87 --------~~l~~~l----~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~  154 (182)
                              ..+.+.+    .......++++.. ..      +........+.+|++++|++++.+|+.+|+      ..+
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~~-ll------~e~~~~~~~~~iI~V~a~~e~r~~R~~~R~------~~~  149 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQATSPYVLWVVP-LL------VENSLYKKANRVLVVDVSPETQLKRTMQRD------DVT  149 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSEEEEECT-TT------TTTTGGGGCSEEEEEECCHHHHHHHHHHHH------TCC
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcCCcceeee-ec------ccccccccCCEEEEEeCCHHHHHHHHHHhh------hhh
Confidence                    1111111    1123344545542 11      111111236789999999999999999983      234


Q ss_pred             hHHHHHHH
Q 030176          155 WGVFCLFI  162 (182)
Q Consensus       155 ~~~~~~~~  162 (182)
                      .+++...+
T Consensus       150 ~~~~~~~~  157 (208)
T d1vhta_         150 REHVEQIL  157 (208)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=3.7e-12  Score=92.51  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=28.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      -.+|.+|+|.|+.||||||+++.|++.++...+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            367789999999999999999999999875443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4e-12  Score=93.86  Aligned_cols=118  Identities=16%  Similarity=0.253  Sum_probs=64.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH----------
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------   85 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   85 (182)
                      .+|.+|+|.|+.||||||+++.|++.|   |+.++...+.     ......+.....++...........          
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p-----~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~   75 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP-----ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWE   75 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS-----CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC-----CCCcccchhhhhhhhcccccchhhhhhHHHHHHHH
Confidence            368899999999999999999999877   4544321100     0111223333333333332222111          


Q ss_pred             -HHHHHHHHHhcCCCcEEEeCCCCC------------HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           86 -IKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        86 -~~~l~~~l~~~~~~~~ildg~~~~------------~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                       ...+...+.  .+..+|+|.|...            ......+. .....||++||||+|++.+.+|...+
T Consensus        76 ~~~~i~~~l~--~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~-~~~~~PDl~i~Ld~~~e~~~~R~~~~  144 (209)
T d1nn5a_          76 QVPLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPD-VGLPKPDLVLFLQLQLADAAKRGAFG  144 (209)
T ss_dssp             THHHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGG-TTSBCCSEEEEEECCHHHHHHC----
T ss_pred             HHHhHHHHhh--cccceeecchhhhhhhhhhhccCccHHHHHHHh-ccCCCCceeeeecccHHHHhhhhccc
Confidence             122233332  3567889986322            11111111 12346999999999999999997654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.9e-12  Score=94.37  Aligned_cols=114  Identities=25%  Similarity=0.361  Sum_probs=66.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCc----------EecHHHHHHHHHHcCChhhHHHHHHHHcC------CCCCHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKEG------KIVPSE   83 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~----------~~~~~di~~~~~~~~~~~~~~~~~~~~~~------~~~~~~   83 (182)
                      .|.+|+|+|++||||||+++.|++.++..          .+..|+.++..    ..... .. .....      .....+
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~----~~~~~-~~-~~~~~~~~~~~~~~~~~   74 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL----TSEQK-AK-ALKGQFNFDHPDAFDNE   74 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC----CHHHH-HH-HHTTCSCTTSGGGBCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccccccc----chhhh-hh-hhhcccccCCcHHHHHH
Confidence            47899999999999999999999998743          34444442110    00000 00 00000      112223


Q ss_pred             HHHHHHHHHHHh----------------------cCCCcEEEeCCCCC-HHHHHHHHHHhCCCCcEEEEEecCHHHHHHH
Q 030176           84 VTIKLLQKAMEE----------------------SGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERR  140 (182)
Q Consensus        84 ~~~~~l~~~l~~----------------------~~~~~~ildg~~~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R  140 (182)
                      ...+.+......                      .....++++|.+.. ......+       .|+.||+++|.+++++|
T Consensus        75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~~~l~~~-------~D~~i~v~~~~~~~~~R  147 (213)
T d1uj2a_          75 LILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDL-------FQMKLFVDTDADTRLSR  147 (213)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHH-------CSEEEEEECCHHHHHHH
T ss_pred             HHHhhhhhhhcCCcccccccccccccccCceEEecccceEEecchhhhccHHHHhh-------hheeeeecCCHHHHHHH
Confidence            333444433321                      12356777875432 2222222       58999999999999999


Q ss_pred             HHhhhc
Q 030176          141 ILNRNQ  146 (182)
Q Consensus       141 ~~~R~~  146 (182)
                      ..+|+.
T Consensus       148 ~~~Rd~  153 (213)
T d1uj2a_         148 RVLRDI  153 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998863

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=6.1e-11  Score=82.52  Aligned_cols=112  Identities=13%  Similarity=0.142  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (182)
                      +.|+|+|||||||||+|+.||++|++++++.++....................      ............ .......+
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~   75 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEE------GFRDREEKVINE-LTEKQGIV   75 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHH------HHHHHHHHHHHH-HHTSSSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhh------HHHHHHHHHHHh-hccccceE
Confidence            35888999999999999999999999999998877666543322111110000      000011111111 11223333


Q ss_pred             EEeCCC--CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~--~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      +.....  ........+..     ..+.+++.++...+..|+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~  116 (169)
T d1kaga_          76 LATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDK  116 (169)
T ss_dssp             EECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC----
T ss_pred             eeccchhhhhhhhhHHhhh-----cceeeeccCcHHHhhhHhhhcc
Confidence            333322  22222222222     2478889999999999887754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.20  E-value=9.9e-12  Score=91.77  Aligned_cols=42  Identities=33%  Similarity=0.483  Sum_probs=38.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~   61 (182)
                      +..+|+|.|||||||||+|+.||++||+.++++|+++|....
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a~   43 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATY   43 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            456789999999999999999999999999999999997644

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.1e-11  Score=91.25  Aligned_cols=41  Identities=29%  Similarity=0.546  Sum_probs=37.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~   61 (182)
                      +++|+|.|||||||||+|+.|+++||+.++++|+++|....
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a~   43 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL   43 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            45999999999999999999999999999999999997544

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.18  E-value=7.2e-11  Score=86.95  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=70.0

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CC--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHH
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   89 (182)
                      +...++.+|.|+|.|||||||+++.|++.+    +.  .+++. |.++..+.............  +     -.....+.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg-D~iR~~l~~~l~ys~~~r~~--~-----~~r~~~~a   90 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRNE--N-----IRRIAEVA   90 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHHH--H-----HHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc-hHHHHhhcCCCCCChhHHHH--H-----HHHHHHHH
Confidence            345788999999999999999999998765    33  34555 44444432211111100000  0     00011111


Q ss_pred             HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHh--------CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVT--------KIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus        90 ~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~--------~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      . .+. ..+..+|++........+...+...        ...+.+.||++||.+++.+|..++.
T Consensus        91 ~-~~~-~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~  152 (208)
T d1m7ga_          91 K-LFA-DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGL  152 (208)
T ss_dssp             H-HHH-HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCH
T ss_pred             H-HHh-ccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccc
Confidence            1 111 3456677777656655555555432        2235678999999999999976653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=3e-11  Score=88.08  Aligned_cols=122  Identities=16%  Similarity=0.264  Sum_probs=65.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHH---H
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK---A   92 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~-----~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~   92 (182)
                      |.+|+++|.|||||||+|+.|++.++.     ..++.|+ ++.........................+.....+..   .
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ-YRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc-eehhhccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            678999999999999999999998852     2455554 554443221110000000000000001111222222   2


Q ss_pred             HHhcCCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176           93 MEESGNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        93 l~~~~~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      +....+..+|+|.......++..+....   .. +.+++.+.++.+.+.++...+
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  134 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGY-KTFFVESICVDPEVIAANIVQ  134 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEECCCCHHHHHHHHHH
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCC-eEEEEEeeccHHHHHHHhHHH
Confidence            2334566788898766666666555433   32 335666777777776655543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.15  E-value=5.3e-12  Score=94.30  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH------------------HHHcCCh-----hhHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA------------------EIKSGSE-----NGTMIQ   71 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~------------------~~~~~~~-----~~~~~~   71 (182)
                      ++++.++.+++|.||+|||||||++.|+   |+..++.|.++.+                  .+..-.+     ....+.
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~---gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~  101 (230)
T d1l2ta_          25 NLNIKEGEFVSIMGPSGSGKSTMLNIIG---CLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL  101 (230)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHH
T ss_pred             EEEEcCCCEEEEECCCCCCcchhhHhcc---CCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHH
Confidence            6678999999999999999999999999   6554544433111                  1111000     011111


Q ss_pred             HH----HH--cCCCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NM----IK--EGKIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~----~~--~~~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +-    ..  .....+.+...+.+.+.+...+...-+.+.    ....++|+..+++++..+|++++ +|+|+
T Consensus       102 eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLl-lDEPT  173 (230)
T d1l2ta_         102 ENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL-ADQPT  173 (230)
T ss_dssp             HHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEE-ecCCc
Confidence            10    11  112234444444555555442211111222    34459999999999999999877 99998

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.9e-10  Score=85.79  Aligned_cols=30  Identities=20%  Similarity=0.270  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      |++|+|.|+.||||||+++.|++.|+-..+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            689999999999999999999999875443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.5e-11  Score=92.31  Aligned_cols=114  Identities=16%  Similarity=0.209  Sum_probs=66.5

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-----------------HHHcCCh-----hhHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----------------EIKSGSE-----NGTMIQN   72 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-----------------~~~~~~~-----~~~~~~~   72 (182)
                      ++++.++.+++|.||+|||||||++.|+   |+..++.|++..+                 ......+     ...+..+
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~---Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~e  101 (240)
T d3dhwc1          25 SLHVPAGQIYGVIGASGAGKSTLIRCVN---LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG  101 (240)
T ss_dssp             EEEECSSCEEEEEESTTSSHHHHHHHHT---TSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHH
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHc---CCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHH
Confidence            5678999999999999999999999999   6554544443111                 1111000     0001111


Q ss_pred             ----HHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 ----MIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                          .... ...+.+...+.+.+.+..-+-... .+.    ....++|+..+++++..+|+++| +|+|+
T Consensus       102 ni~~~l~~-~~~~~~~~~~~v~~~L~~vgL~~~-~~~~~~~LSGG~~QRvaiAraL~~~P~lLl-lDEPt  168 (240)
T d3dhwc1         102 NVALPLEL-DNTPKDEVKRRVTELLSLVGLGDK-HDSYPSNLSGGQKQRVAIARALASNPKVLL-CDEAT  168 (240)
T ss_dssp             HHHHHHHT-TTCCTTHHHHHHHHHHHHHSTTTT-TSSCBSCCCHHHHHHHHHHHHHHTCCSEEE-EESGG
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHhhhhccCCCeEE-ecccc
Confidence                1111 113333333334444433111111 233    34459999999999999998777 99998

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=1.9e-10  Score=86.15  Aligned_cols=116  Identities=20%  Similarity=0.237  Sum_probs=71.6

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC------Chhh-----------HHHHHHHHc-
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG------SENG-----------TMIQNMIKE-   76 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~------~~~~-----------~~~~~~~~~-   76 (182)
                      +++..++.+++|.||+||||||+.+.|+   |+...+.|+++.+.....      ...+           .+..+.+.. 
T Consensus        26 sl~v~~Ge~~~liGpsGaGKSTLl~~i~---Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~  102 (239)
T d1v43a3          26 NLTIKDGEFLVLLGPSGCGKTTTLRMIA---GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFP  102 (239)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTT
T ss_pred             eEEECCCCEEEEECCCCChHHHHHHHHH---cCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHH
Confidence            5678999999999999999999999999   666555555432221100      0000           111111111 


Q ss_pred             --CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 --GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 --~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                        ....+.+...+.+.+.+..-+-..+   -....+..++|+..+++++..+|++++ +|+|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLl-lDEPt  164 (239)
T d1v43a3         103 LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL-MDEPL  164 (239)
T ss_dssp             CC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCcee-ecCCc
Confidence              1234555555555555544221111   123455679999999999999999877 99998

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.06  E-value=1.8e-11  Score=91.21  Aligned_cols=115  Identities=16%  Similarity=0.162  Sum_probs=66.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC------hh-----------hHHHHHH---
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS------EN-----------GTMIQNM---   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~------~~-----------~~~~~~~---   73 (182)
                      -++++.++.+++|.||+||||||+++.|+   |+..++.|++..+......      ..           ..+..+-   
T Consensus        19 vs~~i~~Ge~~~liGpsGaGKSTll~~l~---Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~   95 (229)
T d3d31a2          19 LSLKVESGEYFVILGPTGAGKTLFLELIA---GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF   95 (229)
T ss_dssp             EEEEECTTCEEEEECCCTHHHHHHHHHHH---TSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHh---cCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHH
Confidence            36678999999999999999999999999   6655555444221111000      00           0011110   


Q ss_pred             --HHcCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 --IKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 --~~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                        ...+. ...+.+.++++..-.....+. ........++|+..+++++..+|++++ +|+|+
T Consensus        96 ~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-~~~~LSGG~~QRvaiAraL~~~P~iLl-lDEPt  155 (229)
T d3d31a2          96 GMRMKKI-KDPKRVLDTARDLKIEHLLDR-NPLTLSGGEQQRVALARALVTNPKILL-LDEPL  155 (229)
T ss_dssp             HHHHHCC-CCHHHHHHHHHHTTCTTTTTS-CGGGSCHHHHHHHHHHHHTTSCCSEEE-EESSS
T ss_pred             HHhhccc-cHHHHHHHHHHHhcchhhHhC-ChhhCCHHHhcchhhhhhhhccCCcee-ecCCC
Confidence              11111 123333333333211111111 122345569999999999999998777 99998

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=3e-10  Score=82.77  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=23.2

Q ss_pred             CCCcEEEEEecCHHHHHHHHHhhhcc
Q 030176          122 IEPEFVLFFDCSEEEMERRILNRNQV  147 (182)
Q Consensus       122 ~~~~~vI~ld~~~~~l~~R~~~R~~~  147 (182)
                      ..||++|||++|++++.+|+.+|...
T Consensus       131 ~~Pd~~i~L~~~~e~~~~Ri~~R~~~  156 (208)
T d1gsia_         131 PKPDWQVLLAVSAELAGERSRGRAQR  156 (208)
T ss_dssp             CCCSEEEEECCCHHHHHHHHHHHHHH
T ss_pred             cCCceeEEecccHHHHHHHHHhhhcc
Confidence            46999999999999999999999643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=2e-11  Score=91.18  Aligned_cols=117  Identities=19%  Similarity=0.234  Sum_probs=57.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChh-----------hHHHHHHHHc
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSEN-----------GTMIQNMIKE   76 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~-----------~~~~~~~~~~   76 (182)
                      -+++++++.+++|.||+|||||||++.++   |+..++.|++..+....      ....           ..+..+.+..
T Consensus        19 isl~i~~Gei~~liGpsGsGKSTLl~~i~---Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~   95 (232)
T d2awna2          19 INLDIHEGEFVVFVGPSGCGKSTLLRMIA---GLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSF   95 (232)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC------------
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHh---cCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHH
Confidence            36678999999999999999999999999   76666665552221110      0000           1111111111


Q ss_pred             C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +   ...+.+...+.+.+.+..-+-...   -....+..++|+..+++++..+|++++ +|+|+
T Consensus        96 ~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ill-lDEPt  158 (232)
T d2awna2          96 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-LDEPL  158 (232)
T ss_dssp             ---------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEE-EESTT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence            1   112222223333444433211111   122345679999999999999998777 99998

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.04  E-value=2.8e-11  Score=91.96  Aligned_cols=117  Identities=16%  Similarity=0.188  Sum_probs=70.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH---------------------------HHHHc----
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR---------------------------AEIKS----   62 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~---------------------------~~~~~----   62 (182)
                      -+++..++.+++|.|++|||||||++.|+   |+...+.|.++.                           ..+..    
T Consensus        21 vs~~i~~GEi~~iiG~sGsGKSTLl~~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~   97 (258)
T d1b0ua_          21 VSLQARAGDVISIIGSSGSGKSTFLRCIN---FLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH   97 (258)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSS
T ss_pred             eeeEEcCCCEEEEECCCCCcHHHHHHHHH---cCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEec
Confidence            35678999999999999999999999998   655443333311                           11110    


Q ss_pred             -----CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecC
Q 030176           63 -----GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCS  133 (182)
Q Consensus        63 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~  133 (182)
                           .......+..........+.....+.+.+.+..-.-.....+    .....++|+..+++++..+|+++| +|+|
T Consensus        98 ~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~lli-lDEP  176 (258)
T d1b0ua_          98 FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL-FDEP  176 (258)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE-EEST
T ss_pred             hhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEE-eccc
Confidence                 001111111111122334555555555555544222111122    234559999999999999999777 9999


Q ss_pred             H
Q 030176          134 E  134 (182)
Q Consensus       134 ~  134 (182)
                      +
T Consensus       177 T  177 (258)
T d1b0ua_         177 T  177 (258)
T ss_dssp             T
T ss_pred             c
Confidence            8

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.02  E-value=4.5e-11  Score=89.72  Aligned_cols=116  Identities=16%  Similarity=0.180  Sum_probs=73.2

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-----------CChh-----------hHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-----------GSEN-----------GTMIQ   71 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-----------~~~~-----------~~~~~   71 (182)
                      -+++..++.+++|.||+||||||+++.|+   |+...+.|+++.+....           ....           ..++.
T Consensus        24 vsl~i~~Ge~~~iiG~sGsGKSTll~~i~---gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~  100 (242)
T d1oxxk2          24 VNINIENGERFGILGPSGAGKTTFMRIIA---GLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF  100 (242)
T ss_dssp             EEEEECTTCEEEEECSCHHHHHHHHHHHH---TSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHH---cCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHH
Confidence            35678899999999999999999999999   76666665553322110           0001           11222


Q ss_pred             HHHHc---CCCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           72 NMIKE---GKIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        72 ~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +-+..   ....+.+...+.+.+.+..-+-... .+    ..+..++|+..+++++..+|++++ +|+|+
T Consensus       101 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~p~~LSGGqkQRvaiARaL~~~P~lll-lDEPt  168 (242)
T d1oxxk2         101 ENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV-LNHFPRELSGAQQQRVALARALVKDPSLLL-LDEPF  168 (242)
T ss_dssp             HHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhh-hhCChhhCCHHHHhHHHHHhHHhhccccee-ecCCc
Confidence            21211   2234555555556666554221111 23    344569999999999999999777 99997

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=7.5e-10  Score=81.60  Aligned_cols=118  Identities=11%  Similarity=0.199  Sum_probs=56.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCC-CCCHHHHH-----------H
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPSEVTI-----------K   87 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~   87 (182)
                      +|++|+|.|+-||||||+++.|++.|........     .-......+..+.+++.... ........           .
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~   76 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLK-----FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   76 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEE-----SSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEE-----ECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999853211100     00011122333333333222 22221110           1


Q ss_pred             HHHHHHHhcCCCcEEEeCCCCC-HH----------HHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhh
Q 030176           88 LLQKAMEESGNDKFLIDGFPRN-EE----------NRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        88 ~l~~~l~~~~~~~~ildg~~~~-~~----------q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      .+...+  ..+..+|.|.|..+ ..          ...++....  ...||++||||+|++...+|...|
T Consensus        77 ~i~~~l--~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~  144 (214)
T d1tmka_          77 KIKKDL--LEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGF  144 (214)
T ss_dssp             HHHHHH--HTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------C
T ss_pred             HHHHHH--hcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhccc
Confidence            111222  23577888976322 11          111222221  347999999999998888886655

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=99.01  E-value=8.5e-10  Score=86.22  Aligned_cols=40  Identities=13%  Similarity=0.013  Sum_probs=30.5

Q ss_pred             CCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176          123 EPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS  165 (182)
Q Consensus       123 ~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (182)
                      .||++|||++|++++.+|+.+|  +|.-+..+ .+|.+-++.+
T Consensus       154 ~pdliIyLd~~pe~~l~RI~~R--gR~~E~id-l~YL~~L~~~  193 (329)
T d1e2ka_         154 PGTNIVLGALPEDRHIDRLAKR--QRPGERLD-LAMLAAIRRV  193 (329)
T ss_dssp             TTCEEEEEECCHHHHHHHHHHS--CCTTCCCC-HHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHc--CCCcCCCC-HHHHHHHHHH
Confidence            5899999999999999999999  66666543 3455555444

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.01  E-value=2.1e-11  Score=91.49  Aligned_cols=117  Identities=19%  Similarity=0.240  Sum_probs=69.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------------CChh-----------hHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------------GSEN-----------GTMI   70 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------------~~~~-----------~~~~   70 (182)
                      -+++..++.+++|.||+||||||+++.|+   |+...+.|++..+....            ....           ..+.
T Consensus        22 vsl~i~~Ge~~~liG~sGaGKSTll~~i~---gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV   98 (240)
T d1g2912          22 MSLEVKDGEFMILLGPSGCGKTTTLRMIA---GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV   98 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCH
T ss_pred             eeeEEcCCCEEEEECCCCChHHHHHHHHh---cCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhh
Confidence            35677899999999999999999999999   66555555442211100            0000           0111


Q ss_pred             HHHHH---cCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           71 QNMIK---EGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        71 ~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      .+.+.   .....+.+...+.+.+.+..-+-...   ........++|+..+++++..+|+++| +|+|+
T Consensus        99 ~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLl-lDEPt  167 (240)
T d1g2912          99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL-MDEPL  167 (240)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE-EECTT
T ss_pred             hHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-ecCCC
Confidence            11100   11224545555555555544221111   122244569999999999999999877 99998

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.96  E-value=6.6e-11  Score=85.16  Aligned_cols=30  Identities=20%  Similarity=0.158  Sum_probs=26.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ....+.+|+|+|++||||||||+.|++.++
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            445677899999999999999999998775

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=9.8e-10  Score=81.50  Aligned_cols=27  Identities=15%  Similarity=0.075  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      .++|+|.|+.||||||+++.|++.|.-
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            578999999999999999999998853

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.92  E-value=9.7e-11  Score=88.02  Aligned_cols=116  Identities=15%  Similarity=0.183  Sum_probs=65.0

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-------------HHH--cCCh-----hhHHHHH-
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-------------EIK--SGSE-----NGTMIQN-   72 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-------------~~~--~~~~-----~~~~~~~-   72 (182)
                      -+++.+++.+++|.||+||||||+.+.|+   |+...+.|++..+             ...  ..++     ...+..+ 
T Consensus        25 vs~~i~~Gei~~liGpnGaGKSTl~~~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en  101 (240)
T d1ji0a_          25 IDLKVPRGQIVTLIGANGAGKTTTLSAIA---GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN  101 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred             eeEEECCCCEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHH
Confidence            35678999999999999999999999999   6555554443111             111  0000     0111111 


Q ss_pred             HHHc--CCCCCH--H-HHHHHHHHH-HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           73 MIKE--GKIVPS--E-VTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        73 ~~~~--~~~~~~--~-~~~~~l~~~-l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ....  ......  . ....++... ...... .......+..++|+..+++++..+|+++| ||+|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~LSGG~~Qrv~iAraL~~~P~lLl-lDEPt  167 (240)
T d1ji0a_         102 LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQMLAIGRALMSRPKLLM-MDEPS  167 (240)
T ss_dssp             HHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHHHHHHHHTTCCSEEE-EECTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhChHHHH-hCchhhCCHHHHHHHHHHHHHHhCCCEee-ecCCC
Confidence            1111  111111  1 111121111 011111 11234466679999999999999999887 99998

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.92  E-value=3.4e-10  Score=82.74  Aligned_cols=116  Identities=17%  Similarity=0.197  Sum_probs=68.5

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----------cC---ChhhHHHHHH-----
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----------SG---SENGTMIQNM-----   73 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-----------~~---~~~~~~~~~~-----   73 (182)
                      +-+++++++.+++|.||+|||||||.+.|+   |+...+.|++..+...           ..   ........+.     
T Consensus        19 ~is~~i~~Gei~~l~G~NGsGKSTLl~~i~---gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~   95 (200)
T d1sgwa_          19 RITMTIEKGNVVNFHGPNGIGKTTLLKTIS---TYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA   95 (200)
T ss_dssp             EEEEEEETTCCEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred             ceEEEEcCCCEEEEECCCCChHHHHHHHHh---cccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHH
Confidence            346678899999999999999999999999   6554444444221100           00   0001111111     


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 IKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...+.....+.+.+.++..-. .+.... +..+...++|+..+++++..+|+++| ||+|+
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~~LSgG~~qrv~ia~al~~~~~lll-lDEPt  153 (200)
T d1sgwa_          96 SLYGVKVNKNEIMDALESVEV-LDLKKK-LGELSQGTIRRVQLASTLLVNAEIYV-LDDPV  153 (200)
T ss_dssp             HHTTCCCCHHHHHHHHHHTTC-CCTTSB-GGGSCHHHHHHHHHHHHTTSCCSEEE-EESTT
T ss_pred             HhcCCccCHHHHHHHHHHcCC-cccccc-cCcCCCcHHHHHHHHHHHhcCCCEEE-EcCcc
Confidence            112333444444444332211 111111 33456679999999999999999888 99997

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.92  E-value=2.1e-10  Score=88.08  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLL   56 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l---g~--~~~~~~di~   56 (182)
                      +.++|+|+|++||||||+++.|.+.|   +.  ..++.|+.+
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            34699999999999999999988766   33  367777764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.91  E-value=1.2e-08  Score=71.69  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=26.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..+|.+|+|+|+|||||||+++.|+++|+
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46789999999999999999999999985

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.1e-09  Score=78.55  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~   52 (182)
                      +|.+|+|+|+|||||||+|+.|++.++..+.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~   50 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC   50 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence            688999999999999999999999986544443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.1e-10  Score=87.83  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=67.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~   74 (182)
                      +-+++++++.+++|+|++|||||||++.|.   |+.....|.+              ++..+....+    ...++.+-+
T Consensus        21 ~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi   97 (241)
T d2pmka1          21 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQ---RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI   97 (241)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHH
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHH---hcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccc
Confidence            346678999999999999999999999999   5433333322              2222221111    111222222


Q ss_pred             HcC-CCCCHHHHHHHHHHH-----HHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KEG-KIVPSEVTIKLLQKA-----MEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~~-~~~~~~~~~~~l~~~-----l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+ .....+.+...++..     +.. ..+....+..    ++..++|+..+++++..+|+++| ||+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ili-lDEpt  167 (241)
T d2pmka1          98 SLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI-FDEAT  167 (241)
T ss_dssp             CTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEE-ECCCC
T ss_pred             cccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhh-hhCCc
Confidence            222 233444444333322     111 1111112322    34459999999999999999888 99997

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.90  E-value=9.4e-11  Score=88.76  Aligned_cols=118  Identities=17%  Similarity=0.258  Sum_probs=66.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHcCC-----hhhHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKSGS-----ENGTMIQNM   73 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~~~-----~~~~~~~~~   73 (182)
                      +-++.++++.+++|+|++|||||||++.|+   |+..++.|.+.              +.......     ..+....+.
T Consensus        33 ~isl~i~~Ge~iaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~  109 (253)
T d3b60a1          33 NINLKIPAGKTVALVGRSGSGKSTIASLIT---RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI  109 (253)
T ss_dssp             EEEEEECTTCEEEEEECTTSSHHHHHHHHT---TTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred             ceEEEEcCCCEEEEECCCCChHHHHHHHHh---cccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhh
Confidence            346678999999999999999999999998   54444333331              11111000     011111221


Q ss_pred             -HHcCCCCCHHHHHHHHH-----HHHHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 -IKEGKIVPSEVTIKLLQ-----KAMEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 -~~~~~~~~~~~~~~~l~-----~~l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       +.......++.+.+.++     +.+.. +.+-...+..    .+..++|+..+++++..+|+++| ||+|+
T Consensus       110 ~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ili-lDEpt  180 (253)
T d3b60a1         110 AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI-LDEAT  180 (253)
T ss_dssp             HTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE-EETTT
T ss_pred             hhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEE-ecccc
Confidence             11122344444444332     12222 1111112322    34459999999999988898877 99997

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.89  E-value=2.5e-10  Score=85.39  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=65.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChh-----------hHHHHHHHHcC-CCCCHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSEN-----------GTMIQNMIKEG-KIVPSE   83 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~-----------~~~~~~~~~~~-~~~~~~   83 (182)
                      .+++|.||+||||||+++.|+   |+...+.|.+..+....      ....           ..++.+-+..+ ...+..
T Consensus        25 e~~~liGpnGaGKSTll~~i~---Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~  101 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIA---GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV  101 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred             EEEEEECCCCChHHHHHHHHH---cCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHH
Confidence            588899999999999999999   66655555443222110      0001           11222222222 233444


Q ss_pred             HHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           84 VTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        84 ~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ...+.+.+.+..-+-... .+    ..+..++|+..+++++..+|++++ +|+|+
T Consensus       102 ~~~~~v~~~l~~~gl~~~-~~~~~~~LSGG~kQRvaiAral~~~P~ill-lDEPt  154 (240)
T d2onka1         102 ERDRRVREMAEKLGIAHL-LDRKPARLSGGERQRVALARALVIQPRLLL-LDEPL  154 (240)
T ss_dssp             HHHHHHHHHHHTTTCTTT-TTCCGGGSCHHHHHHHHHHHHHTTCCSSBE-EESTT
T ss_pred             HHHHHHHHHHHhcCcHhh-hhCChhhCCHHHHHHHHHHHHHhccCCceE-ecCcc
Confidence            444555555554221111 22    234459999999999999999887 99998

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.88  E-value=1.6e-08  Score=79.00  Aligned_cols=27  Identities=19%  Similarity=0.181  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ...+|+|.|+.||||||+++.|++.++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            456899999999999999999998874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.7e-10  Score=86.10  Aligned_cols=118  Identities=19%  Similarity=0.212  Sum_probs=66.8

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIK   75 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~   75 (182)
                      -+++++++.+++|+|++|||||||++.|.   |+..++.|.+              +++.+....+    ...++.+-+.
T Consensus        33 isl~i~~Ge~vaivG~sGsGKSTLl~li~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~  109 (251)
T d1jj7a_          33 LTFTLRPGEVTALVGPNGSGKSTVAALLQ---NLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIA  109 (251)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHH
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh---cccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhh
Confidence            35678999999999999999999999998   5443333322              2222221111    1122333333


Q ss_pred             cCC--CCCHHHHHHHHH-----HHHHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176           76 EGK--IVPSEVTIKLLQ-----KAMEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (182)
Q Consensus        76 ~~~--~~~~~~~~~~l~-----~~l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~  135 (182)
                      .+.  ............     +.+.. ..+....++.    ....++|+..+++++..+|+++| +|+|+.
T Consensus       110 ~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ili-lDEpTs  180 (251)
T d1jj7a_         110 YGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLI-LDDATS  180 (251)
T ss_dssp             CSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEE-EESTTT
T ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEE-ecCcCc
Confidence            331  122222222221     22222 1111122332    34459999999999999999887 999983

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=1.1e-10  Score=87.55  Aligned_cols=117  Identities=14%  Similarity=0.169  Sum_probs=67.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH---------HHHc----CCh-----hhHHHHHH--
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA---------EIKS----GSE-----NGTMIQNM--   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~---------~~~~----~~~-----~~~~~~~~--   73 (182)
                      -+++..++.+++|.||+|||||||.++|+   |+..++.|++...         ....    -++     ......+.  
T Consensus        21 vs~~v~~Gei~glvG~nGaGKSTLl~~l~---G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~   97 (238)
T d1vpla_          21 ISFEIEEGEIFGLIGPNGAGKTTTLRIIS---TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLR   97 (238)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHH
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHH
Confidence            35677899999999999999999999999   6555544433111         1110    000     00011110  


Q ss_pred             -HHcCCCCCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 -IKEGKIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 -~~~~~~~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                       ...-.........+.+...+...+-..   --+..++..++|+..+++++..+|.+++ ||+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~ill-LDEPt  161 (238)
T d1vpla_          98 FVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI-LDEPT  161 (238)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEE-ecCCC
Confidence             000012233333444444433211100   1133456679999999999999998777 99997

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=9.8e-10  Score=85.18  Aligned_cols=117  Identities=14%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC----HHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----SEVTI   86 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg-------~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~   86 (182)
                      ...|.+|+|+|++||||||+|+.|++.+.       ...++.|+++.......       ..........|    -+...
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~-------~~~~~~~~g~Pes~D~~~L~  149 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLK-------ERGLMKKKGFPESYDMHRLV  149 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHH-------HHTCTTCTTSGGGBCHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHH-------HhcCCccCCchHhhhHHHHH
Confidence            46678999999999999999999998873       23567777753221100       00001112223    23333


Q ss_pred             HHHHHHHHh------------------------cCCCcEEEeCCCCCHHH--------HHHHHHHhCCCCcEEEEEecCH
Q 030176           87 KLLQKAMEE------------------------SGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        87 ~~l~~~l~~------------------------~~~~~~ildg~~~~~~q--------~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +.+......                        ...+.+|++|.......        ...+..    -.|+.||+|+|.
T Consensus       150 ~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d----~~D~~Ifvda~~  225 (308)
T d1sq5a_         150 KFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSD----FVDFSIYVDAPE  225 (308)
T ss_dssp             HHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGG----GCSEEEEEECCH
T ss_pred             HHHHHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhh----hhheeeeecCCH
Confidence            333333211                        01257778884321110        001111    258999999999


Q ss_pred             HHHHHHHHhhh
Q 030176          135 EEMERRILNRN  145 (182)
Q Consensus       135 ~~l~~R~~~R~  145 (182)
                      +.+.+|..+|.
T Consensus       226 ~~~~~r~i~R~  236 (308)
T d1sq5a_         226 DLLQTWYINRF  236 (308)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999886

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.86  E-value=1.3e-09  Score=82.37  Aligned_cols=117  Identities=16%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------------HHcCCh-----hhHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------------IKSGSE-----NGTMIQNM   73 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------------~~~~~~-----~~~~~~~~   73 (182)
                      -+++..++.+++|.||+|||||||++.|+   |+...+.|++..+.               +....+     ...+..+-
T Consensus        23 vs~~v~~Gei~~liG~nGaGKSTLl~~i~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~en   99 (254)
T d1g6ha_          23 VSISVNKGDVTLIIGPNGSGKSTLINVIT---GFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN   99 (254)
T ss_dssp             ECCEEETTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHH---CCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeee
Confidence            35677899999999999999999999999   66555554432111               111010     01111111


Q ss_pred             H----------------HcCCCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           74 I----------------KEGKIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        74 ~----------------~~~~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +                ........+...+...+.+......   ...+...+..++|+..+++++..+|+++| ||+|+
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~lli-lDEPt  178 (254)
T d1g6ha_         100 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIV-MDEPI  178 (254)
T ss_dssp             HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE-EESTT
T ss_pred             eeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchh-hcCCc
Confidence            1                1112122233333333443331111   11133456679999999999999998777 99997

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=2.2e-10  Score=87.92  Aligned_cols=116  Identities=16%  Similarity=0.188  Sum_probs=66.2

Q ss_pred             hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH-H--cCC--hhhHHHHHHHHcCCCCCHHHHHHHH
Q 030176           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-K--SGS--ENGTMIQNMIKEGKIVPSEVTIKLL   89 (182)
Q Consensus        15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~-~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~l   89 (182)
                      +++++++.+++|+||+|||||||++.|+   |+...+.|.+..+.. .  .+.  -...++.+-+..+....+......+
T Consensus        56 sl~i~~Ge~vaivG~nGsGKSTLl~~i~---Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~  132 (281)
T d1r0wa_          56 NLNIEKGEMLAITGSTGSGKTSLLMLIL---GELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVV  132 (281)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHH---TSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHH
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHh---CCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHHHH
Confidence            5678999999999999999999999999   544444433321110 0  000  0011222222223333333333332


Q ss_pred             HHH-----HHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           90 QKA-----MEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        90 ~~~-----l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      +..     +.. ......++..    ....++|+..+++++..+|+++| ||+|+
T Consensus       133 ~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ill-LDEPt  186 (281)
T d1r0wa_         133 KACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL-LDSPF  186 (281)
T ss_dssp             HHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEE-EESCC
T ss_pred             HHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchh-hcCcc
Confidence            221     111 1112223332    34569999999999988999777 99997

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.82  E-value=3.4e-09  Score=79.69  Aligned_cols=39  Identities=28%  Similarity=0.433  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDL   55 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg--~~~~~~~di   55 (182)
                      ....|..|+|.|||||||||+|+.|++.++  +..++.+++
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~   68 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   68 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHH
Confidence            456678899999999999999999999985  566777665

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.80  E-value=7.6e-10  Score=83.14  Aligned_cols=118  Identities=15%  Similarity=0.196  Sum_probs=68.4

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc--------------CCh----hhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS--------------GSE----NGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~--------------~~~----~~~~~~~~~   74 (182)
                      +-++.++++.+++|+|++|||||||++.|+   |+...+.|++..+....              ..+    ...++.+-+
T Consensus        20 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi   96 (242)
T d1mv5a_          20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLE---RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL   96 (242)
T ss_dssp             EEEEEECTTEEEEEECCTTSSHHHHHHHHT---TSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHH---HhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhhe
Confidence            346678999999999999999999999998   65555555443222110              000    011122211


Q ss_pred             HcC--CCCCHHHHHHHHHHHHHh------cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KEG--KIVPSEVTIKLLQKAMEE------SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~~--~~~~~~~~~~~l~~~l~~------~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+  ....++.....++.....      .......+..    ....++|+..+++++..+|+++| ||+|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ili-lDEpt  167 (242)
T d1mv5a_          97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM-LDEAT  167 (242)
T ss_dssp             TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE-EECCS
T ss_pred             ecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE-ecCCc
Confidence            111  123344444443332211      1111122321    34559999999999988998877 99997

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.79  E-value=1.6e-09  Score=76.62  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~   52 (182)
                      ..+.|+|+|+|||||||||+.|++++|..++..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~   38 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWE   38 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            457899999999999999999999999888754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.76  E-value=4.4e-10  Score=85.03  Aligned_cols=118  Identities=17%  Similarity=0.269  Sum_probs=66.9

Q ss_pred             hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHH
Q 030176           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMI   74 (182)
Q Consensus        13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~   74 (182)
                      +-++.++++.+++|+|++|||||||++.|+   |+...+.|.+              ++.......+    ...++.+-+
T Consensus        36 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi  112 (255)
T d2hyda1          36 DINLSIEKGETVAFVGMSGGGKSTLINLIP---RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI  112 (255)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHTTTT---TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred             ceEEEEcCCCEEEEECCCCCcHHHHHHHHH---hcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHH
Confidence            346678999999999999999999999998   4333332222              2222111110    111222222


Q ss_pred             HcC-CCCCHHHHHHHHHHH-----HHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176           75 KEG-KIVPSEVTIKLLQKA-----MEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (182)
Q Consensus        75 ~~~-~~~~~~~~~~~l~~~-----l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~  134 (182)
                      ..+ ....++.+.+.++..     +.. +.+-...+.    .+...++|+..+++++..+|+++| ||+|+
T Consensus       113 ~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ili-lDEpt  182 (255)
T d2hyda1         113 LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI-LDEAT  182 (255)
T ss_dssp             GGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEE-EESTT
T ss_pred             hccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEE-EeCcc
Confidence            222 233444444444321     111 111111122    134559999999999988898888 99997

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.73  E-value=3.5e-08  Score=76.99  Aligned_cols=40  Identities=13%  Similarity=0.054  Sum_probs=25.4

Q ss_pred             CCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176          123 EPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS  165 (182)
Q Consensus       123 ~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (182)
                      .||.+|||++|++++.+|+++|  +|+.+..+ .+|.+-++.+
T Consensus       159 ~pdliIyLd~~pe~~l~RIk~R--gR~~E~i~-~eYL~~L~~~  198 (331)
T d1osna_         159 PGTNLVVCTVSLPSHLSRVSKR--ARPGETVN-LPFVMVLRNV  198 (331)
T ss_dssp             SCCEEEEEECCHHHHHHHCC--------CCCC-HHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHc--CCCCCCCC-HHHHHHHHHH
Confidence            5899999999999999999999  66555443 3444444433

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=5.6e-08  Score=69.64  Aligned_cols=116  Identities=17%  Similarity=0.280  Sum_probs=58.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCc--Ee--cHHHHHHHHHHcCC----hhhHHHHHHHHcCCCCCH--------HHHHH
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFGYT--HL--SAGDLLRAEIKSGS----ENGTMIQNMIKEGKIVPS--------EVTIK   87 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg~~--~~--~~~di~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~~~   87 (182)
                      |+|+||+|||||||++.|++.+.-.  ..  .+....+.....+.    -....+......+..+..        -....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            8899999999999999999887421  11  00000000000000    001112222222211100        00112


Q ss_pred             HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (182)
Q Consensus        88 ~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R  144 (182)
                      .+...+..  +..++++..+..   ...+.......+.+++++..+.+.+.+|+.+|
T Consensus        84 ~i~~~~~~--g~~~i~~~~~~~---~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~R  135 (186)
T d1gkya_          84 SVKQVSKS--GKTCILDIDMQG---VKSVKAIPELNARFLFIAPPSVEDLKKRLEGR  135 (186)
T ss_dssp             HHHHHHHH--TSEEEEECCHHH---HHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH
T ss_pred             hHHHHhcC--CCeEEecchHHH---HHHHHHhhcccceEEEecCCcHHHHHHHHHhh
Confidence            23333333  456677765433   33333333445666777888999999999998

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=2.5e-08  Score=71.13  Aligned_cols=26  Identities=27%  Similarity=0.295  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      |++|+|+||+|||||||++.|.+.+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            67899999999999999999998874

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.57  E-value=2.2e-08  Score=74.38  Aligned_cols=39  Identities=18%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~   60 (182)
                      .+|+|+|+.||||||+|+.|++.+|+.+++.+|.+.+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            579999999999999999999999999999655555443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=3.7e-09  Score=78.80  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=26.9

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -++++.++.+++|.||+|||||||.+.|+.
T Consensus        18 isl~I~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          18 LSGEVRAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEEEEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            356778999999999999999999999983

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=6e-07  Score=65.27  Aligned_cols=27  Identities=19%  Similarity=0.276  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +|.+|+|+||+|||||||.+.|.+.+.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            478999999999999999999998864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=3.8e-07  Score=65.40  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=21.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      |+|+||+|||||||++.|++.++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999999876

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=1.3e-07  Score=65.69  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++++|+|++|||||||++.|++++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.34  E-value=1.4e-07  Score=66.20  Aligned_cols=25  Identities=40%  Similarity=0.684  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      .|+|+||||||||||++.++..++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            5899999999999999999988854

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=1.3e-05  Score=51.70  Aligned_cols=98  Identities=18%  Similarity=0.292  Sum_probs=66.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCcE
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF  101 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~  101 (182)
                      +|++.||-.|=|||++..|++++.++.+.....--         .++       |    .+    .+.+.... .+.+.+
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfel---------aks-------g----ne----klfehfnkladednv   57 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFEL---------AKS-------G----NE----KLFEHFNKLADEDNV   57 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHH---------HHH-------C----HH----HHHHHHHHHTTCCSE
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhh---------hhc-------c----CH----HHHHHHHhhccccce
Confidence            68899999999999999999999998876422100         000       0    11    22222222 345677


Q ss_pred             EEeCCC---------------CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176          102 LIDGFP---------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (182)
Q Consensus       102 ildg~~---------------~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~  145 (182)
                      |+|.|.               ....|...+.+...... .++||.+++..+..|++-|.
T Consensus        58 iidrfvysnlvyakkfkdysilterqlrfiedkikaka-kvvylhadpsvikkrlrvrg  115 (164)
T d2axpa1          58 IIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKA-KVVYLHADPSVIKKRLRVRG  115 (164)
T ss_dssp             EEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTE-EEEEEECCHHHHHHHHHHHT
T ss_pred             eeehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhhe-eEEEEecChHHHHHHhcccc
Confidence            788652               23777777777775544 58889999999999999774

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=3.9e-07  Score=67.17  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      +-++|+||||+||||+|+.|+++++....
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            35789999999999999999999986654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4e-07  Score=63.64  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.|+|+|||||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            458999999999999999999877

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.15  E-value=9.4e-07  Score=65.96  Aligned_cols=32  Identities=28%  Similarity=0.407  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      .++.-|+|.||||||||++++.||+.++..++
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~~~~~~   69 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFI   69 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhccccccc
Confidence            34556899999999999999999999997654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=1e-06  Score=66.19  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=27.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      ...++-+++.||||||||++++.+|++++...+
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~   74 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF   74 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEE
Confidence            345677899999999999999999999987653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.14  E-value=8.6e-07  Score=65.35  Aligned_cols=30  Identities=27%  Similarity=0.403  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      ++-+++.||||+||||+++.+++.+++...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~   64 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR   64 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            345789999999999999999999987643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=6e-07  Score=68.46  Aligned_cols=38  Identities=32%  Similarity=0.454  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh--------CCcEecHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF--------GYTHLSAGDLL   56 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l--------g~~~~~~~di~   56 (182)
                      ..|.+|+|+|++||||||++..|.+.+        ....++.||++
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            457899999999999999998776554        23456888874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=1.1e-06  Score=65.11  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~   50 (182)
                      ...+.++|.||||+||||+++.|++.++..++
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            34467999999999999999999999986543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.11  E-value=9.5e-07  Score=68.04  Aligned_cols=36  Identities=17%  Similarity=0.347  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDL   55 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di   55 (182)
                      ++.-++++||||||||++|+.||+.++..  .++..++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhccccccc
Confidence            44667899999999999999999998744  5555554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=1.5e-06  Score=64.93  Aligned_cols=39  Identities=23%  Similarity=0.410  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLR   57 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di~~   57 (182)
                      ..++-+++.||||||||++++.++++++..+  ++..++..
T Consensus        40 ~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~   80 (247)
T d1ixza_          40 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE   80 (247)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence            4456799999999999999999999998765  55556543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=1.2e-05  Score=58.53  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      -++|+||||+||||+|+.++++++.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhc
Confidence            3789999999999999999988764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.00  E-value=1.9e-06  Score=59.91  Aligned_cols=24  Identities=33%  Similarity=0.206  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++|+|+|.+|||||||+..|.++|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478999999999999999998776

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=4.2e-06  Score=62.67  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=29.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGD   54 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~d   54 (182)
                      .+.++-++|.||||||||++++.++..++...  ++..+
T Consensus        35 ~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~   73 (258)
T d1e32a2          35 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE   73 (258)
T ss_dssp             CCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             CCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchh
Confidence            34566799999999999999999999998654  44444

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.92  E-value=4.3e-06  Score=65.72  Aligned_cols=34  Identities=29%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~   51 (182)
                      .++++.+++.||||+|||++|+.|++.+|..++.
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~  184 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  184 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            4677899999999999999999999999977754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=3.9e-06  Score=63.12  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=30.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL   55 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di   55 (182)
                      .+.++-|+|.||||||||++++.++..+|..+  ++..++
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l   77 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL   77 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHh
Confidence            45567799999999999999999999999664  454444

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.88  E-value=4.5e-06  Score=60.98  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+.++|+||||+||||+++.++++++
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            34588999999999999999998764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.3e-06  Score=57.96  Aligned_cols=26  Identities=15%  Similarity=0.344  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+.|+|+||+|+|||||++.|.+.+.
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence            35789999999999999999998763

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.79  E-value=5.1e-06  Score=66.99  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~   51 (182)
                      .+..|++.||+|||||.||+.||+.++.+++.
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~   79 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK   79 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            35689999999999999999999999877653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.79  E-value=8.1e-06  Score=60.29  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+..++|.||||+||||+++.|++.+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            456799999999999999999999874

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.78  E-value=7.7e-06  Score=59.72  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .+|+|+|++|||||||++.|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            478999999999999999998765

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.75  E-value=1.2e-05  Score=58.52  Aligned_cols=30  Identities=37%  Similarity=0.728  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+.+|.+|+++||+|+||||.+..||..+
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345778899999999999999877788665

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.3e-05  Score=61.99  Aligned_cols=28  Identities=25%  Similarity=0.241  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+..+|+|+|+||||||||...|.+.+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999998765

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=1.8e-05  Score=54.78  Aligned_cols=30  Identities=27%  Similarity=0.490  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      .++.+|++.|+-||||||+++.+++.+|..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            567899999999999999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1.1e-05  Score=58.70  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.++|+||||+||||+++.+++++
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            348899999999999999999875

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.65  E-value=3.3e-05  Score=56.37  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=29.5

Q ss_pred             hhhhhhcC--CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           10 KEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        10 ~~~~~~~~--~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...|.-+.  ++++.++.|.|+||||||++|..++...
T Consensus        13 ~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          13 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34455555  6789999999999999999999888765

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.63  E-value=2.2e-05  Score=60.58  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+..+|+|+|+||+|||||...|.+.+
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.0002  Score=52.40  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +..++|.||||+||||+++.+++.++
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            55689999999999999999998874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.3e-05  Score=58.87  Aligned_cols=24  Identities=29%  Similarity=0.668  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .-++|+||||+||||+++.+++++
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhh
Confidence            357899999999999999999986

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.9e-05  Score=55.98  Aligned_cols=36  Identities=19%  Similarity=0.352  Sum_probs=28.8

Q ss_pred             hhhhhhcC--CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           10 KEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        10 ~~~~~~~~--~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...|..+.  ++++.++.|+|+||||||++|..++...
T Consensus        10 ~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          10 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44455554  6789999999999999999999888653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.58  E-value=1.1e-05  Score=59.92  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.|+||||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999886

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=1.9e-05  Score=57.31  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      -++|+||||+||||+++.++++++
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            377999999999999999998764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.56  E-value=2.8e-05  Score=56.44  Aligned_cols=27  Identities=30%  Similarity=0.612  Sum_probs=19.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..|.+|+++||+|+||||.+..||..+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999877788665

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.56  E-value=3.2e-05  Score=55.93  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +++.+|+++||+||||||.+..||..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999877788655

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.55  E-value=3.7e-05  Score=55.61  Aligned_cols=27  Identities=33%  Similarity=0.517  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+.+|+++||+|+||||.+..||..+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999888888665

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=3.9e-05  Score=55.61  Aligned_cols=28  Identities=32%  Similarity=0.568  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -..|.+|+++||+|+||||.+..||..+
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3557899999999999999877788665

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.9e-05  Score=59.69  Aligned_cols=28  Identities=18%  Similarity=0.300  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      ..++++||+|+|||.||+.||+.++...
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~   80 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIEL   80 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEE
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCe
Confidence            3789999999999999999999998543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.47  E-value=4.9e-05  Score=55.90  Aligned_cols=29  Identities=17%  Similarity=0.292  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      .+..++|.|++|+|||||++.+++..+..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~   56 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLP   56 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCC
Confidence            45789999999999999999999888754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=2.9e-05  Score=56.33  Aligned_cols=33  Identities=18%  Similarity=0.358  Sum_probs=26.5

Q ss_pred             hhhhhcC--CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           11 EADATVT--VKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        11 ~~~~~~~--~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|..+.  ++++.++.|+|+|||||||+|..++.
T Consensus        22 ~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          22 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             HHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             HHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3344443  67899999999999999999987764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=7.1e-05  Score=54.55  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=27.9

Q ss_pred             hhhhhhcC--CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           10 KEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        10 ~~~~~~~~--~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ...|..+.  ++++.++.|+|+||||||++|..++..
T Consensus        24 ~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          24 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            33444443  789999999999999999999888753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.32  E-value=5.7e-05  Score=55.13  Aligned_cols=28  Identities=21%  Similarity=0.326  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++++.++.|.|+|||||||++-.++...
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            6889999999999999999998887654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.30  E-value=8e-05  Score=50.32  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|+||||||||.+.|..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.29  E-value=6.5e-05  Score=57.78  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL   55 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di   55 (182)
                      ++++.||||||||.+++.||.+.+    +..++..++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~  161 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP  161 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHh
Confidence            456689999999999999999875    334544444

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.29  E-value=0.00011  Score=49.96  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+...|+|+|.+|||||||.+.+..
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhC
Confidence            3456799999999999999998874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.23  E-value=9.3e-05  Score=51.14  Aligned_cols=25  Identities=28%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .++...|+|+|.+|||||||.+.|.
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHh
Confidence            4667789999999999999999886

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.21  E-value=0.00011  Score=52.99  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=29.0

Q ss_pred             hhhhhhcC--CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           10 KEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        10 ~~~~~~~~--~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...|.-+.  ++++.++.|.|+||+|||+++..++-..
T Consensus        21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44455554  6889999999999999999999888543

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.19  E-value=0.00013  Score=56.99  Aligned_cols=29  Identities=21%  Similarity=0.474  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      ++..++++||.|||||-+|+.||+.++.+
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~   95 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIP   95 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccc
Confidence            44568899999999999999999987543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.17  E-value=0.0001  Score=51.97  Aligned_cols=21  Identities=14%  Similarity=0.311  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La   42 (182)
                      +.|+|+|.||+|||||.+.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            369999999999999999998

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00014  Score=52.20  Aligned_cols=145  Identities=10%  Similarity=0.072  Sum_probs=68.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH-----HHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD-----LLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   93 (182)
                      ..+.-++|.||+|+||||+++.+++.+-........     .-......+.......-........+..+.+.++....-
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ir~l~~~~~  101 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN  101 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcccccccchhhHHhhhhh
Confidence            345679999999999999999999877311100000     000011100000000000000011222333333333221


Q ss_pred             Hh---cCCCcEEEeCCC-CCHHHHHHHHHHhCCCC-cE-EEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHH
Q 030176           94 EE---SGNDKFLIDGFP-RNEENRAAFEAVTKIEP-EF-VLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIM  163 (182)
Q Consensus        94 ~~---~~~~~~ildg~~-~~~~q~~~l~~~~~~~~-~~-vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~  163 (182)
                      ..   ...+.+|+|..- ........+.+.+...| .. +|++..+...+..-++.|-..-.-.+.+.++...++.
T Consensus       102 ~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~  177 (207)
T d1a5ta2         102 EHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLS  177 (207)
T ss_dssp             SCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred             hccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecCCCCHHHHHHHHH
Confidence            11   123467777642 34555566666664332 23 3434555566666666665433334555666666663

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.13  E-value=0.00015  Score=51.00  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~   53 (182)
                      .+.-++|+|++|+||||++-.|.++ |+..+..|
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD   45 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIADD   45 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecC
Confidence            4677999999999999999888765 77665543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.12  E-value=0.00017  Score=49.76  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .+...|+|+|.+|||||||++.|.
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~   36 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFS   36 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHh
Confidence            455789999999999999999987

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.12  E-value=0.00014  Score=52.22  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=26.2

Q ss_pred             hhhhhhcC--CCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           10 KEADATVT--VKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        10 ~~~~~~~~--~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ..-|..+.  ++++.++.|.|+||+|||++|..++
T Consensus        13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            44455554  6889999999999999999986654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00016  Score=48.72  Aligned_cols=21  Identities=24%  Similarity=0.260  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|.|+|+||||||.+.|..
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.00017  Score=51.14  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +.|+|+|+|+||||||.+.|..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999974

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00019  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La   42 (182)
                      +..|+|+|.++||||||.+.|.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALA   22 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3568999999999999999997

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.00019  Score=54.96  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=23.3

Q ss_pred             CCCe-EEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPT-VVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~-~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .+|. .++++||+|+|||.+|+.||+.+
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            3444 78899999999999999999986

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00025  Score=49.37  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +..+..|+|+|.+|+|||||.+.|..
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHC
Confidence            34567899999999999999999974

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.03  E-value=0.00022  Score=48.79  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|+|++|||||||.+.|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            35689999999999999998863

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.02  E-value=0.00023  Score=49.11  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=21.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      +.+...|+++|++|||||||++.|.
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHh
Confidence            3456789999999999999999885

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.02  E-value=7.7e-05  Score=52.50  Aligned_cols=33  Identities=15%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~   53 (182)
                      .+.-++|+|++|+||||++-.|.++ |+..+..|
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD   46 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDD   46 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCC
Confidence            5677999999999999999888654 76655543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.00017  Score=52.56  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di   55 (182)
                      .+++..+++|++|+|||||.+.|.   +-....++++
T Consensus        93 l~~kt~~~~G~SGVGKSTLiN~L~---~~~~~~T~~v  126 (225)
T d1u0la2          93 LKGKISTMAGLSGVGKSSLLNAIN---PGLKLRVSEV  126 (225)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHS---TTCCCC----
T ss_pred             hcCCeEEEECCCCCCHHHHHHhhc---chhhhhccCc
Confidence            357889999999999999999997   4333444443

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.98  E-value=0.00012  Score=56.18  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++|.|+||+||||+++.+++-|
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            48999999999999999999766

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.96  E-value=0.00027  Score=49.24  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~   53 (182)
                      -.+.=++|+|++|+||||++-.|.++ |+..+..|
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD   46 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR-GHRLVADD   46 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCC
Confidence            45677999999999999999887766 76655543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.96  E-value=0.00054  Score=49.38  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=27.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHH
Q 030176           24 VFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAE   59 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~   59 (182)
                      +.|.|++|||||.|+++++.++.     ..+++..+.....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM   79 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHH
Confidence            78999999999999999988762     3456666654433

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00026  Score=48.77  Aligned_cols=20  Identities=35%  Similarity=0.665  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      .|+|+|.+|||||||.+.|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999997

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00024  Score=51.60  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++++|+|..||||||+.+.|.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            689999999999999999988754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.91  E-value=0.00023  Score=49.39  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      -|+|+|.|++|||||.+.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~   21 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38999999999999999997

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00029  Score=50.05  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +.|+|+|++|||||||.+.|..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            3589999999999999999875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00047  Score=49.07  Aligned_cols=29  Identities=17%  Similarity=0.397  Sum_probs=24.0

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ......-++|+|+||+|||+++..||++.
T Consensus        39 ~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          39 QRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             TSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            34455678999999999999999999765

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.88  E-value=0.00038  Score=52.12  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ...+++|.|+.|.||||||+.+..+
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.86  E-value=0.00042  Score=51.37  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +.++.+++|.|+||+||||++..++..
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            577899999999999999998888754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00025  Score=48.99  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .....|+|+|.|++|||||.+.|.
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHh
Confidence            345789999999999999999886

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.82  E-value=0.00022  Score=49.73  Aligned_cols=19  Identities=32%  Similarity=0.366  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHH
Q 030176           24 VFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La   42 (182)
                      |+|+|+|++|||||.+.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999999986

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00048  Score=45.12  Aligned_cols=27  Identities=7%  Similarity=0.102  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++-.|+++|.+||||||+|++|...|
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            577899999999999999999997666

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00045  Score=47.21  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+++|.+|+|||||++.+..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998774

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00053  Score=47.33  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|+|.+|||||||.+.+..
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999998764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.74  E-value=0.00027  Score=54.31  Aligned_cols=138  Identities=19%  Similarity=0.145  Sum_probs=65.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~   99 (182)
                      ..|+|+|+.||||||+++.|....+-  ..+...|...-.........     .+.......   ..+++...+.+. .+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~-----~~~~~~~~~---~~~ll~~~lR~~-pd  237 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYT-----QLFFGGNIT---SADCLKSCLRMR-PD  237 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEE-----EEECBTTBC---HHHHHHHHTTSC-CS
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccc-----eeccccchh---HHHHHHHHhccC-CC
Confidence            45899999999999999999866541  12221111000000000000     000011111   234455555442 23


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEec-CHHHHHHHHHhhhc-cCCCCCcchHHHHHHHHHhhhhh
Q 030176          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQ-VRQKLPFSWGVFCLFIMLSFSSC  169 (182)
Q Consensus       100 ~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~-~~~~l~~R~~~R~~-~r~~~~~~~~~~~~~~~~~~~~~  169 (182)
                      . |+=|-.++.+....+.......+-.+--+++ +.....+|+..--. ....-..+.+.....+..++-..
T Consensus       238 ~-iivgEiR~~ea~~~l~a~~tGh~g~~tT~Ha~s~~~a~~Rl~~l~~~~~~~~~~~~~~~~~~i~~~vd~v  308 (323)
T d1g6oa_         238 R-IILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMI  308 (323)
T ss_dssp             E-EEESCCCSTHHHHHHHHHHTTCSCEEEEECCSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHHHCCEE
T ss_pred             c-ccCCccCchhHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcccchhhccCCHHHHHHHHHhheeEE
Confidence            3 4445446655555443332222323444555 44788888875321 12222455666677666554443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.72  E-value=0.00047  Score=47.76  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|.+|+|||||.+.|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            699999999999999999984

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.71  E-value=0.00053  Score=47.11  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+++|.+|||||||.+.+..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            589999999999999998874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00074  Score=50.41  Aligned_cols=29  Identities=14%  Similarity=0.286  Sum_probs=23.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ......-++|+|+||+|||+++..|++++
T Consensus        35 ~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          35 CRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             TSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            34455678899999999999999999764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.68  E-value=0.00062  Score=46.46  Aligned_cols=22  Identities=27%  Similarity=0.173  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|.|++|||||||.+.+..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4688999999999999998864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00048  Score=47.42  Aligned_cols=21  Identities=24%  Similarity=0.514  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      +|+|.|.+++|||||.++|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999973

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00054  Score=47.72  Aligned_cols=20  Identities=30%  Similarity=0.391  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      .|+|.|.+|||||||++.+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHh
Confidence            58999999999999999887

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0005  Score=47.86  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +...|+|+|.+|||||||.+.+..
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999988874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00064  Score=46.86  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+++|.+|||||||++.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            588999999999999998763

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00067  Score=46.65  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|.+|||||||++.+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            589999999999999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00065  Score=46.68  Aligned_cols=21  Identities=19%  Similarity=0.446  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|.+|||||||++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00057  Score=46.73  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+|.|.+|+|||||++.+..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            35789999999999999998863

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=0.0004  Score=48.19  Aligned_cols=19  Identities=32%  Similarity=0.469  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHHH
Q 030176           24 VFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La   42 (182)
                      |+|.|.|++|||||.+.|.
T Consensus         4 VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999999986

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.57  E-value=0.00086  Score=48.55  Aligned_cols=25  Identities=32%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++++|+|.|.+.+|||||++.|...
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            3466999999999999999999754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00081  Score=45.93  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .-.|+|+|.+|||||||++.+..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            34689999999999999998874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00082  Score=46.36  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|.|.+|||||||.+.+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998763

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.52  E-value=0.00077  Score=46.72  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ...+...|+++|.+|||||||.+.+.
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHh
Confidence            34556789999999999999998775

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00082  Score=45.85  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+++|.+|||||||.+.+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00092  Score=49.28  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+.+|+|++|+||||++-.|+..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            47789999999999999998887653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.51  E-value=0.00062  Score=46.87  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      +...|+++|++|||||||.+.+.
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999999886

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00091  Score=45.66  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|.+|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00069  Score=47.30  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|.+|+|||||.+.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999988764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00087  Score=46.09  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+++|.+|||||||++.+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00092  Score=45.67  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|.+|||||||++.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.48  E-value=0.00021  Score=52.30  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .++...+++|++|+|||||.+.|.
T Consensus        95 l~~~~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          95 FQDKTTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHC
T ss_pred             hccceEEEECCCCccHHHHHHhhc
Confidence            356788999999999999999997

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.00089  Score=52.05  Aligned_cols=21  Identities=38%  Similarity=0.765  Sum_probs=17.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANI   41 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~L   41 (182)
                      .++.+|+|+||+||||+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            578999999999999986544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.001  Score=45.57  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -.|+|+|.+|||||||++.+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0009  Score=45.84  Aligned_cols=20  Identities=35%  Similarity=0.488  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      .|+++|.+|+|||||++.+.
T Consensus         4 Ki~viG~~~vGKTsLi~r~~   23 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFV   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999998876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00097  Score=45.52  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+++|.+|||||||++.+..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998874

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.42  E-value=0.00089  Score=49.49  Aligned_cols=24  Identities=25%  Similarity=0.534  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ..+..|+|+|.+|+||||+.+.|.
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHh
Confidence            456789999999999999999998

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.001  Score=45.39  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -.|+|+|.+|||||||.+.+..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998874

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.001  Score=48.59  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..++++|+||+++||||++|.++-
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHH
Confidence            347899999999999999988763

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.42  E-value=0.0008  Score=50.37  Aligned_cols=26  Identities=35%  Similarity=0.446  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +.+-+|+|++||||||+.++|.=.+|
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            34789999999999999998864443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.41  E-value=0.001  Score=46.13  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+++|.+|||||||++.+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0011  Score=45.60  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+++|.+|||||||++.+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999988864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0011  Score=45.08  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|.|.+|||||||++.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998873

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=45.60  Aligned_cols=22  Identities=14%  Similarity=0.160  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|+|.+|+|||||++.+..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4688999999999999988774

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.0012  Score=44.87  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|++.|.+|||||||++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998873

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.36  E-value=0.00031  Score=47.57  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~   44 (182)
                      .|+|+|.|++|||||.+.|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0012  Score=45.20  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+++|.+|||||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998873

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0011  Score=49.34  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+.++.|.|+|||||||+|-.++...
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            4678899999999999999987777544

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.0013  Score=51.04  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=24.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +++..+.+-+|+|++|||||++..+|.=.||
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3455566889999999999999999864443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0012  Score=46.37  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|.+|||||||++.+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            589999999999999998874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0013  Score=45.04  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      .|+|+|.+|||||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.32  E-value=0.0015  Score=46.56  Aligned_cols=32  Identities=13%  Similarity=0.139  Sum_probs=27.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      .++...++|.|||++|||++|..|.+-++-..
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~v   81 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV   81 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhCCEE
Confidence            36668999999999999999999998886443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.00022  Score=49.67  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .+.+|+|++||||||+..+|.-.+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            477899999999999999998655

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0012  Score=45.14  Aligned_cols=20  Identities=35%  Similarity=0.564  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      .|+|+|.+|+|||||++.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~   22 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFG   22 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHh
Confidence            47899999999999999886

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0013  Score=44.93  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+++|.+|||||+|++.+..
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.30  E-value=0.0017  Score=51.16  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      .+.-+|+|+||.||||||.+..+...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4567899999999999999888887763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.27  E-value=0.0014  Score=44.82  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -.|+|+|.+|||||||++.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998763

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0016  Score=45.93  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.0

Q ss_pred             eEEEEEcCC-CCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGP-GSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~-GsGKSTla~~La~~l   45 (182)
                      +.+.|+|.. |+||||++-.|+..|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            579999995 999999988888766

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0019  Score=47.83  Aligned_cols=28  Identities=21%  Similarity=0.345  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...|++|+++|.=|+||||++..||..+
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            3557899999999999999988888766

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0016  Score=44.40  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -.|+++|.+|+|||+|++.+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4689999999999999998864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0015  Score=45.10  Aligned_cols=23  Identities=17%  Similarity=0.455  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|+++|.+|+|||||.+.+..
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            35699999999999999998874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0016  Score=44.46  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|+|.+|+|||||.+.+..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0016  Score=44.79  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      .|+++|.+|+|||||++.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            48899999999999999886

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.14  E-value=0.0016  Score=45.12  Aligned_cols=22  Identities=23%  Similarity=0.227  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|.|.|.+|||||.+.|.+
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            4699999999999999999973

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0017  Score=45.44  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+++|.+|+|||+|.+.+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999888764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.01  E-value=0.0021  Score=46.63  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La   42 (182)
                      .+++|+||+.+||||++|.++
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            478999999999999988765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.0011  Score=45.55  Aligned_cols=20  Identities=20%  Similarity=0.378  Sum_probs=9.1

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      .|+|.|.+|||||||++.|.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             EEEEECCCCC----------
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            48899999999999998776

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0024  Score=44.45  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCChHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANI   41 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~L   41 (182)
                      ..|+|.|.+|||||||.+.+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999988

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.0025  Score=47.95  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=30.6

Q ss_pred             hhhhhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           10 KEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        10 ~~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +-+|....+.++..++|.|++|+|||+|+..+++..
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            445667778999999999999999999999888643

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0013  Score=45.15  Aligned_cols=20  Identities=25%  Similarity=0.420  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      .|+++|.+|+|||||.+.+.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            58899999999999988765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.0028  Score=43.84  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|.|.+|||||+|.+.+..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999987764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.86  E-value=0.0034  Score=46.67  Aligned_cols=31  Identities=16%  Similarity=0.339  Sum_probs=26.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      .++...+.|.||+++|||++++.|.+.+|..
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            3566788999999999999999999988754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0031  Score=43.12  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -.|+++|.+|||||||++.+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3578999999999999998774

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.80  E-value=0.0028  Score=49.83  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .+..|+|+|.+|+|||||.+.|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            45779999999999999999997

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0051  Score=45.23  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+..+..++|+++|.=|+||||++-.||..+
T Consensus        13 ~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          13 DDIARNEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             HHHHTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34455677899999999999999887777665

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.67  E-value=0.0028  Score=49.61  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .....++|+|+||+|||+++..||.+.
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            344456888999999999999998764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.0038  Score=44.19  Aligned_cols=27  Identities=11%  Similarity=0.019  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+.-++++|++|+||||+|..|++..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999755

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.64  E-value=0.0031  Score=46.75  Aligned_cols=15  Identities=47%  Similarity=0.700  Sum_probs=12.6

Q ss_pred             EEEEcCCCCChHHHH
Q 030176           24 VFVLGGPGSGKGTQC   38 (182)
Q Consensus        24 i~I~G~~GsGKSTla   38 (182)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            567799999999864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0041  Score=42.94  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...|++.|.+|+|||||.+.+..
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            36799999999999999987764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.62  E-value=0.0043  Score=46.56  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ...+.++|+|.|.||||||.++|...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            34567999999999999999999854

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.59  E-value=0.0048  Score=45.86  Aligned_cols=28  Identities=25%  Similarity=0.332  Sum_probs=23.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      =++.+.++-|.|++||||||+|-.++..
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHH
Confidence            3688899999999999999998766653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.59  E-value=0.0038  Score=44.36  Aligned_cols=25  Identities=24%  Similarity=0.130  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ..|+|+|.+++|||||+..|....|
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            4699999999999999999975443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.58  E-value=0.0036  Score=44.87  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La   42 (182)
                      ..|+|.|.+|||||||.+.+.
T Consensus         7 ~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999998875

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.58  E-value=0.0037  Score=45.80  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHH
Q 030176           24 VFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~~   44 (182)
                      |+|.|++|+||+++|+.|+..
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHHh
Confidence            788999999999999999754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.50  E-value=0.0039  Score=46.35  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++.+.++-|.|++||||||+|-.++...
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHH
Confidence            3688899999999999999988777543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.0057  Score=45.59  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=32.3

Q ss_pred             cCchhhhhhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176            6 ETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ++-++.+|....+.++..++|.|++|+|||+|+..++..
T Consensus        53 ~TGIraID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          53 VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCceeeeeeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            334566777777889999999999999999998888755

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.46  E-value=0.0045  Score=46.31  Aligned_cols=15  Identities=33%  Similarity=0.698  Sum_probs=12.7

Q ss_pred             EEEEcCCCCChHHHH
Q 030176           24 VFVLGGPGSGKGTQC   38 (182)
Q Consensus        24 i~I~G~~GsGKSTla   38 (182)
                      ++|.|+|||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            667799999999864

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=95.37  E-value=0.0065  Score=39.78  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      .-...+|.+|.|||||+++-.+....|.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~   34 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGY   34 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            4467889999999999998666666653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.0057  Score=42.24  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ..|+|.|..|||||||.+.+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999988643

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.20  E-value=0.0066  Score=45.02  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      +..++|+|.|-+|||||.++|...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999998843

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.94  E-value=0.0094  Score=42.00  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEH   44 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~   44 (182)
                      ..|+|+|-+.+|||||+..|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            45999999999999999988753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.93  E-value=0.008  Score=44.77  Aligned_cols=27  Identities=19%  Similarity=0.092  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      -+.|+|+|..|+|||||+..|...-|.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            357999999999999999999866553

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.89  E-value=0.0079  Score=41.28  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|.|..|+||||+.+.+..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999988753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.78  E-value=0.011  Score=43.71  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +.|+|.|..|+|||||+..|...-|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            4689999999999999999865444

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.76  E-value=0.012  Score=41.62  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             eEEEEE-cCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVL-GGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~-G~~GsGKSTla~~La~~l   45 (182)
                      ++|+|+ |.-|+||||++..||..+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHH
Confidence            456555 888999999988887665

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.73  E-value=0.014  Score=41.36  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             CeEEEEE-cCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVL-GGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~-G~~GsGKSTla~~La~~l   45 (182)
                      +++|+++ +.-|+||||++-.||..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            5678777 667999999988887665

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.19  Score=35.98  Aligned_cols=33  Identities=15%  Similarity=0.044  Sum_probs=25.4

Q ss_pred             hhhhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        11 ~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      .+..++.-+.++..+|+|..|||||-++-..+.
T Consensus        66 ~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~   98 (233)
T d2eyqa3          66 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF   98 (233)
T ss_dssp             HHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred             HHHHHHhccCccCeEEEcCCCCCcHHHHHHHHH
Confidence            345555667788999999999999999765543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0095  Score=44.35  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      -.+|.|+|+.++|||||++.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTT
T ss_pred             EEEEEEECCCCCCHHHHHHHHcC
Confidence            35899999999999999999884

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.56  E-value=0.013  Score=42.71  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +.|+|+|.=|+||||++-.|+..|
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~L   25 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGL   25 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHH
Confidence            578899999999999988877665

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.51  E-value=0.011  Score=44.53  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      -|+|+|.|-||||||.+.|..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             cEeEECCCCCCHHHHHHHHHC
Confidence            489999999999999999963

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.33  E-value=0.018  Score=42.55  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=22.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ...+..++|+|.|-+|||||.+.|.+
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCceEEEEEecCccchhhhhhhhhc
Confidence            34567899999999999999999983

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.30  E-value=0.021  Score=40.09  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|+|...+|||||+..|..
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEEccCCcHHHHHHHHHh
Confidence            4699999999999999999973

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=94.18  E-value=0.0063  Score=39.38  Aligned_cols=20  Identities=30%  Similarity=0.335  Sum_probs=17.1

Q ss_pred             CCCeEEEEEcCCCCChHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQC   38 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla   38 (182)
                      .++...+|.+|+|||||+.+
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            56788899999999999765

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.13  E-value=0.023  Score=42.35  Aligned_cols=37  Identities=19%  Similarity=0.350  Sum_probs=30.8

Q ss_pred             CchhhhhhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176            7 TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus         7 ~~~~~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~   43 (182)
                      +-++.+|.-..+.++..+.|.|++|+|||+++..++.
T Consensus        54 TGIraID~l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          54 TGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             cCceEEecccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            3456677777889999999999999999999877663

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.06  E-value=0.016  Score=40.36  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 030176           22 TVVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~   43 (182)
                      ..|+|.|.+.+|||||++.|..
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEeccCCcHHHHHHHHHh
Confidence            3579999999999999999973

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.017  Score=44.92  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~   43 (182)
                      =++|+|++|||||++++.+..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHH
Confidence            389999999999998765554

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.53  E-value=0.026  Score=42.04  Aligned_cols=25  Identities=36%  Similarity=0.547  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      +.|+++|...+|||||.++|.   |...
T Consensus        25 P~ivVvG~~ssGKSSliNaLl---G~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIV---GRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHH---TSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHh---CCCC
Confidence            457899999999999999998   7554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.53  E-value=0.031  Score=40.01  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      ..|+++|-..+|||||+..|....|.
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            35899999999999999999877664

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.51  E-value=0.023  Score=42.14  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=27.8

Q ss_pred             hhhhhhhcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176            9 VKEADATVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus         9 ~~~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ++.+|.-..+.++..+.|.|++|+|||+|+..+.
T Consensus        55 i~~ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          55 LIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             CTTTTTTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred             ceEEeccccccCCceEeeccCCCCChHHHHHHHH
Confidence            4556666677888999999999999999987654

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.42  E-value=0.018  Score=40.06  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      +|+|+|+..||||..|..|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            479999999999999999885544

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.00  E-value=0.031  Score=41.37  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030176           23 VVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La   42 (182)
                      .|+++|.-.||||||.++|.
T Consensus        28 ~ivvvG~~SsGKSsliNaLl   47 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHh
Confidence            57788999999999999998

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.95  E-value=0.039  Score=40.61  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ++|+|.|.=|+||||++-.||..|
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~L   26 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAAL   26 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999877776554

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.26  E-value=0.056  Score=38.42  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      ..|++.|-.++|||||+..|.-..|.
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            45899999999999999988766664

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.12  E-value=0.47  Score=34.54  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=24.0

Q ss_pred             hhhhhcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176           11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        11 ~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      .+..++.-..++.-+|.|..|||||-++-..+
T Consensus        94 ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~  125 (264)
T d1gm5a3          94 EIRNDMISEKPMNRLLQGDVGSGKTVVAQLAI  125 (264)
T ss_dssp             HHHHHHHSSSCCCCEEECCSSSSHHHHHHHHH
T ss_pred             HHHHHhhccCcceeeeeccccccccHHHHHHH
Confidence            34445555677788999999999999976544

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.99  E-value=0.046  Score=39.65  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           23 VVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        23 ~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      .|+|+|-.++|||||+..|....|..
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~~~g~i   51 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILFLTGMV   51 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHHHTTSS
T ss_pred             EEEEEeeCCCCHHHHHHHHHHHcCCc
Confidence            49999999999999999997766653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.98  E-value=0.058  Score=38.95  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGYT   48 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~~   48 (182)
                      ..|+|+|-.++|||||+..|.-..|..
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i   33 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGI   33 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            479999999999999999998777753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.87  E-value=0.044  Score=41.83  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      +.|+|.|..++|||||+..|...-|.
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g~   43 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAGI   43 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBC
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCCC
Confidence            56999999999999999999876664

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.098  Score=34.20  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      +|.+-+|+||..|||||-+-..+..+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            46788999999999999644444433

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.53  E-value=0.072  Score=36.61  Aligned_cols=20  Identities=25%  Similarity=0.273  Sum_probs=15.5

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 030176           24 VFVLGGPGSGKGTQCANIVE   43 (182)
Q Consensus        24 i~I~G~~GsGKSTla~~La~   43 (182)
                      .++++|.|+|||.++-.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            56889999999987665554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.06  E-value=0.064  Score=40.30  Aligned_cols=20  Identities=35%  Similarity=0.473  Sum_probs=16.8

Q ss_pred             CCeEEEEEcCCCCChHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCA   39 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~   39 (182)
                      .+.+-++.|.+|+|||||+.
T Consensus        13 ~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            45677899999999999864

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.77  E-value=0.071  Score=40.22  Aligned_cols=20  Identities=35%  Similarity=0.473  Sum_probs=16.8

Q ss_pred             CCeEEEEEcCCCCChHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCA   39 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~   39 (182)
                      .+.+-++.|.+|+|||||+.
T Consensus        13 ~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            45667899999999999973

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=90.49  E-value=0.11  Score=43.11  Aligned_cols=29  Identities=21%  Similarity=0.440  Sum_probs=24.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...+...|+|+|.+|||||+-++.+.+.+
T Consensus        82 ~~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          82 QSQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            44567789999999999999999888765

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.24  E-value=0.068  Score=40.29  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=16.8

Q ss_pred             CCeEEEEEcCCCCChHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCA   39 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~   39 (182)
                      .+.+-++.|.+|+|||||+.
T Consensus        13 ~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCCEEEEEccCCCCcccccc
Confidence            35678999999999999864

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.18  E-value=0.04  Score=38.34  Aligned_cols=20  Identities=10%  Similarity=0.064  Sum_probs=16.2

Q ss_pred             CCeEEEEEcCCCCChHHHHH
Q 030176           20 KPTVVFVLGGPGSGKGTQCA   39 (182)
Q Consensus        20 ~~~~i~I~G~~GsGKSTla~   39 (182)
                      .+.-+++++|+|||||+++-
T Consensus        39 ~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHHH
Confidence            45567899999999998753

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.16  E-value=0.13  Score=43.05  Aligned_cols=29  Identities=14%  Similarity=0.391  Sum_probs=24.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...+...|+|+|.+|||||+-++.+.+.+
T Consensus        87 ~~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          87 QDREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44667889999999999999999887665

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.97  E-value=0.085  Score=38.54  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=16.7

Q ss_pred             CCCCeEEEEEcCCCCChHH
Q 030176           18 VKKPTVVFVLGGPGSGKGT   36 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKST   36 (182)
                      +.+++.+++.+|.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            4677889999999999996

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.91  E-value=0.14  Score=42.87  Aligned_cols=29  Identities=14%  Similarity=0.413  Sum_probs=24.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...+...|+|+|.+|||||.-++.+.+.+
T Consensus       121 ~~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         121 DDRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            34667899999999999999999887655

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.83  E-value=0.2  Score=33.06  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=20.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..|.+-+|+||..|||||-+-..+..+
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHh
Confidence            467888999999999999654444444

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.77  E-value=0.18  Score=35.10  Aligned_cols=26  Identities=15%  Similarity=0.160  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (182)
Q Consensus        22 ~~i~I~G~~GsGKSTla~~La~~lg~   47 (182)
                      ...+|..|+|+|||.++-.++..++.
T Consensus        86 ~~~ll~~~tG~GKT~~a~~~~~~~~~  111 (206)
T d2fz4a1          86 KRGCIVLPTGSGKTHVAMAAINELST  111 (206)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred             CCcEEEeCCCCCceehHHhHHHHhcC
Confidence            34567889999999998888877764

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=89.40  E-value=0.15  Score=43.12  Aligned_cols=29  Identities=21%  Similarity=0.505  Sum_probs=24.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...+.--|+|+|.+|||||.-++.+.+.+
T Consensus       119 ~~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         119 TDRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             HHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34567789999999999999988877655

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.28  E-value=0.16  Score=42.50  Aligned_cols=29  Identities=21%  Similarity=0.367  Sum_probs=24.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ...++..|+|+|.+|||||+-++.+.+.+
T Consensus        90 ~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          90 RDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34667889999999999999998887655

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.82  E-value=0.18  Score=42.52  Aligned_cols=28  Identities=14%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      ..+...|+|+|-+|||||.-++.+.+.+
T Consensus       118 ~~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         118 DRENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             HTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4566789999999999999988887655

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=87.45  E-value=0.32  Score=31.83  Aligned_cols=21  Identities=19%  Similarity=0.200  Sum_probs=16.7

Q ss_pred             CeEEEEEcCCCCChHH-HHHHH
Q 030176           21 PTVVFVLGGPGSGKGT-QCANI   41 (182)
Q Consensus        21 ~~~i~I~G~~GsGKST-la~~L   41 (182)
                      +.+-+|+||..||||| |.+.+
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHH
Confidence            5677899999999999 44443

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=86.45  E-value=0.34  Score=33.17  Aligned_cols=23  Identities=22%  Similarity=0.227  Sum_probs=19.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++|+|+|..  ||||.+..|+.-|
T Consensus         2 ~kvI~VTGTn--GKTTt~~mi~~iL   24 (214)
T d1gg4a4           2 ARVVALTGSS--GKTSVKEMTAAIL   24 (214)
T ss_dssp             CEEEEEECSS--CHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC--cHHHHHHHHHHHH
Confidence            4789999976  6999999888766

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.30  E-value=0.16  Score=36.04  Aligned_cols=24  Identities=13%  Similarity=0.082  Sum_probs=18.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La   42 (182)
                      ..++-+++++|.|+|||+.+-..+
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHH
Confidence            355668889999999998755443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.29  E-value=0.62  Score=28.30  Aligned_cols=31  Identities=16%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (182)
Q Consensus        18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~   49 (182)
                      +.+.+.|-+.|.-|+|-|.||+.| ...|+.+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L-~~~G~~V   35 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEIL-LNEGYQI   35 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHH-HHHTCEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHH-HhCCCEE
Confidence            455678999999999999999866 5667644

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.36  E-value=0.52  Score=32.31  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=19.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      .++++|+|+|..  ||||.+..|+.-|
T Consensus        12 ~~~~~iAITGTn--GKTTt~~~l~~iL   36 (207)
T d1j6ua3          12 EKKEEFAVTGTD--GKTTTTAMVAHVL   36 (207)
T ss_dssp             HCCCEEEEECSS--SHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC--CHHHHHHHHHHHH
Confidence            456799999965  6999988887655

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=83.35  E-value=0.49  Score=32.81  Aligned_cols=23  Identities=26%  Similarity=0.186  Sum_probs=18.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~l   45 (182)
                      -++|+|+|..  ||||.+..|+.-|
T Consensus         5 ~~vI~ITGT~--GKTTt~~~l~~iL   27 (234)
T d1e8ca3           5 LRLVGVTGTN--GKTTTTQLLAQWS   27 (234)
T ss_dssp             SEEEEEESSS--CHHHHHHHHHHHH
T ss_pred             CeEEEEECCC--cHHHHHHHHHHHH
Confidence            3689999987  8999988887554

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.71  E-value=0.35  Score=37.23  Aligned_cols=20  Identities=15%  Similarity=0.154  Sum_probs=15.2

Q ss_pred             CCCeEEEEEcCCCCChHHHH
Q 030176           19 KKPTVVFVLGGPGSGKGTQC   38 (182)
Q Consensus        19 ~~~~~i~I~G~~GsGKSTla   38 (182)
                      |.....+|.+.+|||||+++
T Consensus        14 p~~g~~lv~A~AGsGKT~~l   33 (485)
T d1w36b1          14 PLQGERLIEASAGTGKTFTI   33 (485)
T ss_dssp             CCSSCEEEECCTTSCHHHHH
T ss_pred             CCCCCeEEEEcCchHHHHHH
Confidence            33445788899999999863

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.49  E-value=0.51  Score=32.57  Aligned_cols=23  Identities=17%  Similarity=0.393  Sum_probs=18.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (182)
Q Consensus        21 ~~~i~I~G~~GsGKSTla~~La~~lg   46 (182)
                      ++-|+|+||   ||+|+.+.|.+.+.
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p   31 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFP   31 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCT
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCc
Confidence            455677786   69999999999874