Citrus Sinensis ID: 030180

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFRFVSVVVKGNIAIGEGGGDISDN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccHcHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHcccEEEEEEHHHHHHHHHcccccEEEEccccccc
Coil and Loop (DISEMBL)
masisqtnqfpcktlsqnpphnqftskpsilplnsvRISRSLAKKSFLSiqgftrarplvltraadddewgpekekeeggalavaeeespkevtEIDNLKKALVDsfygtdrglnatSETRAEIVELITQLeaknptpapTEALTLLNAKWILVHIFFRFVSVVVKGniaigegggdisdn
Flexible Loop (DISEMBL)
masisqtnqfpcktlsqnpphNQFTSKPSILPLNSVRISRSLAKKsflsiqgftrarplvltraadddewgpekekeeggalavaeeespkevteIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQleaknptpAPTEALTLLNAKWILVHIFFRFVSVVVKGNIaigegggdisdn
Low Complexity Region (SEG)
MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAdddewgpekekeeggalavaeeeSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFRFVSVVVKGNIAIGEGGGDISDN
Disordered region (IsUnstruct)
*************************************I**SLAKKSFLSIQGFTRARPLVLT***********************************NLKKALVDSFYGTDRGLNATSETRAEIVELITQLEA******PTEALTLLNAKWILVHIFFRFVSVVVKGNIAIG*********
Disordered Region (DISOPRED)
****************************************************************************************************KALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFRFVSVVVKGNIAIGEGGGDI***
Disordered Region (DISEMBL)
*********FPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAD****************************EIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFRFVSVVVKGNIAIGEGGGDISDN
Disordered Region (DISPRO)
*******************************************************************************************EVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFRFVSVVVKGNIAIGEGGGD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFRFVSVVVKGNIAIGEGGGDISDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q9ZWQ8	323	Plastid-lipid-associated	N/A	no	0.872	0.489	0.974	2e-85
Q96398	322	Chromoplast-specific caro	N/A	no	0.839	0.472	0.585	2e-41
O99019	326	Light-induced protein, ch	N/A	no	0.944	0.524	0.52	5e-36
P80471	326	Light-induced protein, ch	N/A	no	0.944	0.524	0.52	1e-35
Q94KU6	319	Plastid lipid-associated	N/A	no	0.834	0.473	0.478	1e-29
O81439	318	Probable plastid-lipid-as	yes	no	0.817	0.465	0.466	5e-29
O49629	310	Probable plastid-lipid-as	no	no	0.795	0.464	0.452	2e-27
Q94FZ9	327	Plastid lipid-associated	N/A	no	0.784	0.434	0.441	2e-21
Q6K439	319	Probable plastid-lipid-as	yes	no	0.718	0.407	0.482	2e-20
O82291	376	Probable plastid-lipid-as	no	no	0.469	0.226	0.432	8e-14

>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1

 Score =  314 bits (804), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/158 (97%), Positives = 155/158 (98%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV
Sbjct: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60

Query: 61  LTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET 120
           LTRAADDDEWGPEKEKE GGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET
Sbjct: 61  LTRAADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET 120

Query: 121 RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           RAEIVELITQLEAKNPTPAPTEALTLLNAKWILV+  F
Sbjct: 121 RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSF 158

Citrus unshiu (taxid: 55188)

>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 116/164 (70%), Gaps = 12/164 (7%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSV-RISRSLAKKSFLSIQGFTRARPL 59
           MA +SQ NQ PCKTL+ NPP  Q TSKPS+ P+ S+   +R+ A KS +S+      RP 
Sbjct: 1   MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISV------RPA 54

Query: 60  VLTRAA-DDDEWGPEKEKEEGG----ALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGL 114
              RA  +DDEWG +K+++ G     A+A  EEE P E +EI  LKKALVDSFYGTDRGL
Sbjct: 55  FKVRAVLNDDEWGEDKDEKYGDDSSVAVAEKEEEKPLEPSEIYKLKKALVDSFYGTDRGL 114

Query: 115 NATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
             + +TRAEIVELITQLE+KNPTPAPTEALTLLN KWIL +  F
Sbjct: 115 RVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYTTF 158

May be involved in carotenoid sequestration within chromoplasts.

Cucumis sativus (taxid: 3659)

>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1

 Score =  150 bits (379), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 118/175 (67%), Gaps = 4/175 (2%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE E+   G +AV EEE PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFR-FVSVVVKGNIAI 171
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL +  F     ++ +GN+ +
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPL 175

Required for normal plant growth. May be both photoprotective and play an ancillary role in photosynthesis. May structurally stabilize thylakoids during osmotic and oxidative stress.

Solanum demissum (taxid: 50514)

>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 117/175 (66%), Gaps = 4/175 (2%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE E+   G +AV EEE PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFR-FVSVVVKGNIAI 171
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL +  F     ++ +GN+ +
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPL 175

Required for normal plant growth. May be both photoprotective and play an ancillary role in photosynthesis. May structurally stabilize thylakoids during osmotic and oxidative stress.

Solanum tuberosum (taxid: 4113)

>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 10/161 (6%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKP--SILPLNSVRISRSLAKKSFLSIQGFTRARP 58
           MA++   NQFPCKT  Q+  +++  SKP  S++P+++      L ++       F  +R 
Sbjct: 1   MATVQFFNQFPCKTRVQSSANSKPLSKPPSSLVPMSA------LTRRPSFPPGEFAVSRS 54

Query: 59  LVLTRAAD-DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
               R  D +DE  PE  +  G AL +AEE + + V E + LK++LVDS YGTDRGL+A+
Sbjct: 55  DFRVRVIDAEDELDPETSEGGGSALLMAEE-AIESVEETEVLKRSLVDSLYGTDRGLSAS 113

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           SETRAEI +LITQLE+KNPTPAPT+AL LLN KWIL +  F
Sbjct: 114 SETRAEIGDLITQLESKNPTPAPTDALFLLNGKWILAYTSF 154

May stabilize the accumulated carotenoid structures.

Brassica campestris (taxid: 3711)

>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1

 Score =  127 bits (318), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 104/163 (63%), Gaps = 15/163 (9%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRARPL 59
           MA++    QFPCKTL+ +  + +  SK P +LP+NS+       ++S +   G +  RP 
Sbjct: 1   MATVPLFTQFPCKTLNPSSSNTKHQSKSPILLPINSIN------RRSEI---GVSVHRPD 51

Query: 60  VLTRAAD-DDEWGP---EKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLN 115
              RA D DDEWG    E+       ++VA++ + + V E + LK++L DS YGTDRGL+
Sbjct: 52  FKIRATDIDDEWGQDGVERVFASSSTVSVADK-AIESVEETERLKRSLADSLYGTDRGLS 110

Query: 116 ATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
            +S+TRAEI ELITQLE+KNPTPAP EAL LLN KWIL +  F
Sbjct: 111 VSSDTRAEISELITQLESKNPTPAPNEALFLLNGKWILAYTSF 153

Arabidopsis thaliana (taxid: 3702)

>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 99/159 (62%), Gaps = 15/159 (9%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSIL-PLNSVRISRSLAKKSFLSIQGFTRARPL 59
           MA++  + QF C+T     P+++  SKP  L P+ S+ I R +     +++      R +
Sbjct: 1   MATVQLSTQFSCQTRVSISPNSKSISKPPFLVPVTSI-IHRPMISTGGIAVS----PRRV 55

Query: 60  VLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSE 119
              RA D  E G         +  +A EE+ ++V E + LK++LVDS YGTDRGL+A+SE
Sbjct: 56  FKVRATDTGEIG---------SALLAAEEAIEDVEETERLKRSLVDSLYGTDRGLSASSE 106

Query: 120 TRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           TRAEI +LITQLE+KNPTPAPTEAL LLN KWIL +  F
Sbjct: 107 TRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYTSF 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 21/163 (12%)

Query: 8   NQFPCKT-LSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRAR-------PL 59
           +QF CKT ++ +   +  +  P +LP+N +    ++ +  F       RA        P 
Sbjct: 9   SQFTCKTPITSSSTSSFQSKSPILLPINPINRRIAVHRHDFK-----VRASDVNDEWGPD 63

Query: 60  VLTRAAD-DDEWGPEKEKEEGGALAVAEE---ESPKEVTEIDNLKKALVDSFYGTDRGLN 115
              R  D DDEWGPE     G   +VAE+   E+ +   E + LK+ L  S YGTDRGL+
Sbjct: 64  SKGRGGDVDDEWGPEI----GLNSSVAEKVAEEAIESAEETERLKRVLAGSLYGTDRGLS 119

Query: 116 ATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           A+SETRAEI ELITQLE+KNP PAP EAL LLN KWILV+  F
Sbjct: 120 ASSETRAEISELITQLESKNPNPAPNEALFLLNGKWILVYTSF 162

May modulate the action of carotenoids.

Brassica campestris (taxid: 3711)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 84/145 (57%), Gaps = 15/145 (10%)

Query: 25  TSKPSILPLNSVRISRSLAKKSFLSIQGF-----TRARPLVLTRAA----DDDEWGPEKE 75
           T  PS  P+ S R    L   + L   G       RA P  LT  A     +DEWG E  
Sbjct: 14  TQSPSPSPVASAR----LVAPAVLGFAGAPRFPTLRAAPRRLTARAVAGDAEDEWGKEPA 69

Query: 76  KEEGGALAVAEEESPKE--VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEA 133
            ++GGA A   E        +E+  LK  L ++ YGT+RGL A+SETRAE+VELITQLEA
Sbjct: 70  ADQGGAAAAVAEAPADVPVTSEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEA 129

Query: 134 KNPTPAPTEALTLLNAKWILVHIFF 158
           +NPTPAPTEALTLLN KWIL +  F
Sbjct: 130 RNPTPAPTEALTLLNGKWILAYTSF 154

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 12/97 (12%)

Query: 66  DDDEWGPE----KEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETR 121
           ++DEWG E     E + G   AV++            LK+ L DS YGT+ G  A SE R
Sbjct: 124 NEDEWGGEIGGETEADAGNGSAVSDPTW--------ELKRCLADSVYGTELGFKAGSEVR 175

Query: 122 AEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           AE++EL+ QLEA NPTPAP E   LL+  W+L++  F
Sbjct: 176 AEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAF 212

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
62900641	323	RecName: Full=Plastid-lipid-associated p	0.872	0.489	0.974	1e-83
255566853	321	Plastid-lipid-associated protein, chloro	0.828	0.467	0.590	2e-40
350539549	326	plastid lipid associated protein CHRC [S	0.944	0.524	0.52	3e-40
449434000	322	PREDICTED: chromoplast-specific caroteno	0.839	0.472	0.585	8e-40
224118150	329	predicted protein [Populus trichocarpa]	0.867	0.477	0.575	1e-37
118489702	329	unknown [Populus trichocarpa x Populus d	0.845	0.465	0.579	2e-37
147787229	281	hypothetical protein VITISV_012048 [Viti	0.558	0.359	0.745	4e-35
25453087	326	RecName: Full=Light-induced protein, chl	0.944	0.524	0.52	2e-34
22261807	326	RecName: Full=Light-induced protein, chl	0.944	0.524	0.52	5e-34
460761	322	fibrillin [Capsicum annuum] gi|1279231|e	0.911	0.512	0.520	2e-33

>gi|62900641|sp|Q9ZWQ8.1|PAP_CITUN RecName: Full=Plastid-lipid-associated protein, chloroplastic; AltName: Full=CitPAP; Flags: Precursor gi|3928760|dbj|BAA34702.1| homolog to plastid-lipid-associated protein [Citrus unshiu]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 154/158 (97%), Positives = 155/158 (98%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV
Sbjct: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60

Query: 61  LTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET 120
           LTRAADDDEWGPEKEKE GGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET
Sbjct: 61  LTRAADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET 120

Query: 121 RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           RAEIVELITQLEAKNPTPAPTEALTLLNAKWILV+  F
Sbjct: 121 RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSF 158

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566853|ref|XP_002524410.1| Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis] gi|223536371|gb|EEF38021.1| Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/161 (59%), Positives = 112/161 (69%), Gaps = 11/161 (6%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASISQ NQFPCKTLS  P +++FTS+PS+    S++ + S+ + +       T  RP+ 
Sbjct: 1   MASISQLNQFPCKTLSTPPCNSKFTSRPSVF---SIKTTTSICRPTL-----STGTRPVF 52

Query: 61  LTRAAD-DDEWGPEKEKEEGGALAVAEEES--PKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             RA D +DEWGP+ E           EE   P EVTEID+LKK LVDSFYGTDRGL AT
Sbjct: 53  SIRAVDAEDEWGPDYEDSAVAVAEEESEEKLKPTEVTEIDSLKKQLVDSFYGTDRGLKAT 112

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           SETRAEIVELITQLE+KNPT APTEALTLLN KWIL +  F
Sbjct: 113 SETRAEIVELITQLESKNPTAAPTEALTLLNGKWILAYTSF 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539549|ref|NP_001234183.1| plastid lipid associated protein CHRC [Solanum lycopersicum] gi|83743301|gb|ABC42191.1| plastid lipid associated protein CHRC [Solanum lycopersicum]

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 118/175 (67%), Gaps = 4/175 (2%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PC+TL     +++ TSK S LP++S            +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCRTLQITSQYSKPTSKISTLPISSTNFPSKTELHRAISVKEFTYPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE EK   G +AV +EE PKE +EI+ LKK L DSFYGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEKISPGGVAVVDEEPPKEPSEIELLKKQLADSFYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFR-FVSVVVKGNIAI 171
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL +  F     ++ +GN+ +
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLLL 175

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434000|ref|XP_004134784.1| PREDICTED: chromoplast-specific carotenoid-associated protein, chromoplast-like [Cucumis sativus] gi|449524631|ref|XP_004169325.1| PREDICTED: chromoplast-specific carotenoid-associated protein, chromoplast-like [Cucumis sativus] gi|62899808|sp|Q96398.1|CHRC_CUCSA RecName: Full=Chromoplast-specific carotenoid-associated protein, chromoplast; Flags: Precursor gi|1523992|emb|CAA64846.1| chromoplast-specific carotenoid-associated protein, CHRC [Cucumis sativus] gi|4138857|gb|AAD05165.1| chromoplast-specific carotenoid-associated protein CHRC [Cucumis sativus]

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 116/164 (70%), Gaps = 12/164 (7%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSV-RISRSLAKKSFLSIQGFTRARPL 59
           MA +SQ NQ PCKTL+ NPP  Q TSKPS+ P+ S+   +R+ A KS +S+      RP 
Sbjct: 1   MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISV------RPA 54

Query: 60  VLTRAA-DDDEWGPEKEKEEGG----ALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGL 114
              RA  +DDEWG +K+++ G     A+A  EEE P E +EI  LKKALVDSFYGTDRGL
Sbjct: 55  FKVRAVLNDDEWGEDKDEKYGDDSSVAVAEKEEEKPLEPSEIYKLKKALVDSFYGTDRGL 114

Query: 115 NATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
             + +TRAEIVELITQLE+KNPTPAPTEALTLLN KWIL +  F
Sbjct: 115 RVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYTTF 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118150|ref|XP_002331570.1| predicted protein [Populus trichocarpa] gi|222873794|gb|EEF10925.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/165 (57%), Positives = 117/165 (70%), Gaps = 8/165 (4%)

Query: 1   MASISQTNQFPCKTLS-QNPPHNQFTS-KPSILPLNSVRISRS-----LAKKSFLSIQGF 53
           MA+ISQ NQFPCKTLS + P  + FTS +PSI+PLNS++ + +     L  +  ++ +  
Sbjct: 1   MAAISQLNQFPCKTLSSKTPLFSHFTSSRPSIIPLNSIKNNPTTNNSILKPRILVTREQP 60

Query: 54  TRARPLVLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRG 113
           T+ R L L +A D+DE  PE E     ALA   EE  KE+ E+D LK  LVD+FYGTDRG
Sbjct: 61  TKKRNLFLVKAVDEDEGSPENEGPPV-ALAEKGEEELKELAEVDRLKGQLVDTFYGTDRG 119

Query: 114 LNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           LNATSETRAE+VELITQLEA+NP PAPTEALTLLN KWIL +  F
Sbjct: 120 LNATSETRAEVVELITQLEARNPNPAPTEALTLLNGKWILAYTSF 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489702|gb|ABK96652.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/169 (57%), Positives = 117/169 (69%), Gaps = 16/169 (9%)

Query: 1   MASISQTNQFPCKTL-SQNPPHNQFTS-KPSILPLNSVR----ISRSLAKKSFLSIQGFT 54
           MA+ISQ NQFPCKTL S+ P  + FTS +PS +PLNS++     + S+ K+  L     T
Sbjct: 1   MAAISQLNQFPCKTLYSKTPLFSHFTSSRPSTIPLNSIKNNPTTNNSILKQRIL----VT 56

Query: 55  RARP-----LVLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYG 109
           R +P     L L +A D+DE  PE E     ALA   EE  KE+TE+D LK  LVD+FYG
Sbjct: 57  REQPAKKRNLFLVKAVDEDEGSPENEGPPV-ALAEKGEEELKELTEVDRLKGQLVDTFYG 115

Query: 110 TDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           TDRGLNATSETRAE+VELITQLEA+NP PAPTEALTLLN KWIL +  F
Sbjct: 116 TDRGLNATSETRAEVVELITQLEARNPNPAPTEALTLLNGKWILAYTSF 164

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787229|emb|CAN69132.1| hypothetical protein VITISV_012048 [Vitis vinifera]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/106 (74%), Positives = 85/106 (80%), Gaps = 5/106 (4%)

Query: 55  RARPLVLTRAADDDEWGPEKEKEEG--GALAVAEEESPKEVTEIDNLKKALVDSFYGTDR 112
           R RP+VL R A DDEWGPEK + EG    +AV EEE  KE+T   +LKKALVDSFYGTDR
Sbjct: 14  RGRPVVLVRTALDDEWGPEKXEPEGEGSTVAVVEEEKSKEIT---SLKKALVDSFYGTDR 70

Query: 113 GLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
           GL ATSETRAEIVELITQLEAKNPTPAPTEALTLLN KWIL +  F
Sbjct: 71  GLKATSETRAEIVELITQLEAKNPTPAPTEALTLLNGKWILAYTSF 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25453087|sp|O99019.1|LIPC_SOLDE RecName: Full=Light-induced protein, chloroplastic; AltName: Full=C40.4; Flags: Precursor gi|4007750|emb|CAA10372.1| fibrillin [Solanum demissum]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 118/175 (67%), Gaps = 4/175 (2%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE E+   G +AV EEE PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFR-FVSVVVKGNIAI 171
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL +  F     ++ +GN+ +
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPL 175

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22261807|sp|P80471.2|LIPC_SOLTU RecName: Full=Light-induced protein, chloroplastic; AltName: Full=Drought-induced stress protein CDSP-34; Flags: Precursor gi|2598049|emb|CAA75558.1| chloroplast drought-induced stress protein, 34 kD) [Solanum tuberosum]

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 117/175 (66%), Gaps = 4/175 (2%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE E+   G +AV EEE PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFR-FVSVVVKGNIAI 171
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL +  F     ++ +GN+ +
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPL 175

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|460761|emb|CAA50750.1| fibrillin [Capsicum annuum] gi|1279231|emb|CAA65784.1| plastoglobules associated protein [Capsicum annuum] gi|1296480|emb|CAA66160.1| plastoglobules associated protein [Capsicum annuum] gi|4006974|emb|CAA10373.1| plastid-lipid-associated protein [Capsicum annuum]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 115/173 (66%), Gaps = 8/173 (4%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PCKTL     +++ +S    LPL S            +SI+ FT  +P  
Sbjct: 1   MASISSLNQIPCKTLQITSQYSKISS----LPLTSPNFPSKTELHRSISIKEFTNPKPKF 56

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE E+   G +AV EEE PKE +E++ LKK L DSFYGT+RGL+A+
Sbjct: 57  TAQATNYDKEDEWGPELEQINPGGVAVVEEEPPKEPSEMEKLKKQLTDSFYGTNRGLSAS 116

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFR-FVSVVVKGNI 169
           SETRAEIVELITQLE+KNPTPAPTEAL+LLN KWIL +  F     ++ +GN+
Sbjct: 117 SETRAEIVELITQLESKNPTPAPTEALSLLNGKWILAYTSFSGLFPLLARGNL 169

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
UNIPROTKB|O99019	326	O99019 "Light-induced protein,	0.944	0.524	0.445	1.1e-30
UNIPROTKB|P80471	326	P80471 "Light-induced protein,	0.944	0.524	0.445	1.8e-30
TAIR|locus:2136627	318	FIB "fibrillin" [Arabidopsis t	0.823	0.468	0.419	5.3e-24
TAIR|locus:2132006	310	AT4G22240 [Arabidopsis thalian	0.795	0.464	0.415	3.8e-23
TAIR|locus:2062497	376	AT2G35490 [Arabidopsis thalian	0.386	0.186	0.478	1.5e-12
TAIR|locus:2178133	273	AT5G09820 [Arabidopsis thalian	0.353	0.234	0.333	0.00023

UNIPROTKB|O99019 O99019 "Light-induced protein, chloroplastic" [Solanum demissum (taxid:50514)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 78/175 (44%), Positives = 101/175 (57%)

Query:     1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
             MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P  
Sbjct:     1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKF 60

Query:    61 LTRAAXXXXXXX---XXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
               +A                            PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct:    61 TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query:   118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFR-FVSVVVKGNIAI 171
             SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL +  F     ++ +GN+ +
Sbjct:   121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPL 175

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

UNIPROTKB|P80471 P80471 "Light-induced protein, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 78/175 (44%), Positives = 100/175 (57%)

Query:     1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
             MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P  
Sbjct:     1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKF 60

Query:    61 LTRAAXXXXXXX---XXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
               +A                            PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct:    61 TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query:   118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFR-FVSVVVKGNIAI 171
             SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL +  F     ++ +GN+ +
Sbjct:   121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPL 175

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2136627 FIB "fibrillin" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 68/162 (41%), Positives = 90/162 (55%)

Query:     1 MASISQTNQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRARPL 59
             MA++    QFPCKTL+ +  + +  SK P +LP+NS+       ++S +   G +  RP 
Sbjct:     1 MATVPLFTQFPCKTLNPSSSNTKHQSKSPILLPINSIN------RRSEI---GVSVHRPD 51

Query:    60 VLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPK---EVTEIDNLKKALVDSFYGTDRGLNA 116
                RA                        + K    V E + LK++L DS YGTDRGL+ 
Sbjct:    52 FKIRATDIDDEWGQDGVERVFASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSV 111

Query:   117 TSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
             +S+TRAEI ELITQLE+KNPTPAP EAL LLN KWIL +  F
Sbjct:   112 SSDTRAEISELITQLESKNPTPAPNEALFLLNGKWILAYTSF 153

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010205 "photoinhibition" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2132006 AT4G22240 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 66/159 (41%), Positives = 90/159 (56%)

Query:     1 MASISQTNQFPCKTLSQNPPHNQFTSKPSIL-PLNSVRISRSLAKKSFLSIQGFTRARPL 59
             MA++  + QF C+T     P+++  SKP  L P+ S+ I R +     +++      R +
Sbjct:     1 MATVQLSTQFSCQTRVSISPNSKSISKPPFLVPVTSI-IHRPMISTGGIAVS----PRRV 55

Query:    60 VLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSE 119
                RA                          ++V E + LK++LVDS YGTDRGL+A+SE
Sbjct:    56 FKVRATDTGEIGSALLAAEEAI---------EDVEETERLKRSLVDSLYGTDRGLSASSE 106

Query:   120 TRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
             TRAEI +LITQLE+KNPTPAPTEAL LLN KWIL +  F
Sbjct:   107 TRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYTSF 145

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2062497 AT2G35490 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/71 (47%), Positives = 47/71 (66%)

Query:    99 LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFF 158
             LK+ L DS YGT+ G  A SE RAE++EL+ QLEA NPTPAP E   LL+  W+L++  F
Sbjct:   153 LKRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAF 212

Query:   159 -RFVSVVVKGN 168
                + ++  G+
Sbjct:   213 SELIPLLAAGS 223

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2178133 AT5G09820 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 0.00023, P = 0.00023
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query:    91 KEVTEIDNLKKALVDSFYGTDRGL-NATSETRAEIVELITQLEAKNPTPAPTEALTLLNA 149
             +E+T + ++K+ L ++  G +RG+    S+ + EI  L+  LE +NPTP PT  L  +  
Sbjct:    79 EEIT-VSHIKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGG 137

Query:   150 KWILVH 155
              W L++
Sbjct:   138 CWKLIY 143


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      181       158   0.00085  106 3  11 22  0.38    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.33u 0.11s 13.44t   Elapsed:  00:00:01
  Total cpu time:  13.34u 0.11s 13.45t   Elapsed:  00:00:01
  Start:  Fri May 10 12:11:36 2013   End:  Fri May 10 12:11:37 2013

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZWQ8	PAP_CITUN	No assigned EC number	0.9746	0.8729	0.4891	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00012826001	SubName- Full=Chromosome undetermined scaffold_404, whole genome shotgun sequence; (322 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027603001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (254 aa)			•						0.506
	GSVIVG00026973001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (166 aa)			•						0.506
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•						0.506
	GSVIVG00021220001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (152 aa)			•						0.506
	GSVIVG00002625001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (149 aa)			•						0.506
	GSVIVG00028801001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (151 aa)			•						0.505
	GSVIVG00019630001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (309 aa)			•						0.505
	psbP1	SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_18, whole genome shot [...] (259 aa)			•						0.505
	GSVIVG00009465001	SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (234 aa)			•						0.505
	GSVIVG00007397001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (251 aa)			•						0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	5e-22

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 87.5 bits (217), Expect = 5e-22
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 99  LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWIL 153
           LK+ L+D+ YGT+RGL A+S+ RAEI   +TQLEA NPTPAPTE+L LLN KW L
Sbjct: 3   LKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRL 57

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.82

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.82  E-value=1.8e-20  Score=151.05  Aligned_cols=83  Identities=37%  Similarity=0.591  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhccCCcCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCceEEEEcccchhhHHHhhccccccCCCc
Q 030180           97 DNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFRFVSVVVKGNIAIGEGGG  176 (181)
Q Consensus        97 ~~lK~~LL~ai~gt~RGl~As~~qR~~I~elI~qLEalNPtp~P~~a~~lL~G~WrLlYTT~~ell~L~~~~~~~G~~~G  176 (181)
                      +++|++||+++++++||+.+++++|++|+++|++||++||++.|+++.++|+|+|+|+|||..++++++......+.++|
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~   80 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG   80 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence            47899999999999999999999999999999999999999999986699999999999999999977654333446788


Q ss_pred             CCC
Q 030180          177 DIS  179 (181)
Q Consensus       177 di~  179 (181)
                      +|.
T Consensus        81 ~v~   83 (198)
T PF04755_consen   81 RVF   83 (198)
T ss_pred             ceE
Confidence            775

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 29/194 (14%), Positives = 54/194 (27%), Gaps = 57/194 (29%)

Query: 12  CKTLSQNPPHNQFTSKPSILPLNSV--RISRSLAKKSF------LS-------IQGFT-R 55
              +  N       S    L ++S+   + R L  K +      L           F   
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 56  ARPLVLTRAA----------------DDDEWGPEKEKEEG---GALAVAEEESPKEVTEI 96
            + L+ TR                  D        ++ +      L    ++ P+EV   
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 97  DNLKKALV-----DSFYGTDRGLNATSETRAEIVEL-ITQLEAKN-----------P--T 137
           +  + +++     D     D   +   +    I+E  +  LE              P   
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 138 PAPTEALTLLNAKW 151
             PT  L+L+   W
Sbjct: 386 HIPTILLSLI---W 396

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00