Citrus Sinensis ID: 030195

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTDLYSLS
Secondary Structure (PSIPRED)
cccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEccEEEEEEEEccccHHHHccccccccHHHccccccEEEEEcccccccccccEEEEEccccccccccccEEEEEcccccccccccccHHHHHHHHHcccccccEEEEEEEcccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEEEEEcccHHHHHHcccccHHHEEcccccEEEEccccccccccccEEEEEcccHHccccccHcEEEEcccccccccccccHHHHHHHHcccccccEEEEEEEccccEEEEEccccccc
Coil and Loop (DISEMBL)
MAATAGSIFAASSQFasatrsvscrnatpsvsstlgssfkgaslprsspkqkktvRITGKVTAAVttatnpyeeieeytrpswamfelgkapvywktmnglppmsgeklkifynpyakkllpnedfgigfnggfnqpfmcggepramlrknrgqndspfytiqicvpkhgmyyftdlysls
Flexible Loop (DISEMBL)
MAATAGSIFAASSQFASATRSVSCRNAtpsvsstlgssfkgaslprsspkqkktvritgkvtaavttatnpyeeieeytrpswaMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTDLYSLS
Low Complexity Region (SEG)
MAATagsifaassqfasatrsVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGKvtaavttatNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTDLYSLS
Disordered region (IsUnstruct)
*******************************************************RITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR***********SPFYTIQICVPKHGMYYFTDLY***
Disordered Region (DISOPRED)
**********ASSQF**************SVSSTLGSSFKGASLP**********RITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP*********QNDSPFYTIQICVPKHGMYYFTDLYSLS
Disordered Region (DISEMBL)
*********************************************************TGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTDLYSLS
Disordered Region (DISPRO)
*************************************SFKGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTDLYS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTDLYSLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
225442943	282	PREDICTED: uncharacterized protein LOC10	0.966	0.620	0.659	5e-61
255553199	279	conserved hypothetical protein [Ricinus	0.950	0.616	0.651	9e-60
224054336	286	predicted protein [Populus trichocarpa]	0.972	0.615	0.625	4e-56
114149950	277	chloroplast post-illumination chlorophyl	0.850	0.555	0.645	1e-54
217072944	254	unknown [Medicago truncatula]	0.906	0.645	0.618	8e-53
357468177	280	hypothetical protein MTR_4g010140 [Medic	0.906	0.585	0.618	9e-53
357468179	209	hypothetical protein MTR_4g010140 [Medic	0.906	0.784	0.618	1e-52
388490544	182	unknown [Medicago truncatula]	0.906	0.901	0.612	7e-52
359807532	277	uncharacterized protein LOC100790141 [Gl	0.900	0.588	0.596	1e-51
217072380	240	unknown [Medicago truncatula]	0.906	0.683	0.612	2e-51

>gi|225442943|ref|XP_002266165.1| PREDICTED: uncharacterized protein LOC100264489 isoform 1 [Vitis vinifera] gi|225442945|ref|XP_002266207.1| PREDICTED: uncharacterized protein LOC100264489 isoform 2 [Vitis vinifera] gi|297743467|emb|CBI36334.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/179 (65%), Positives = 136/179 (75%), Gaps = 4/179 (2%)

Query: 1   MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGK 60
           MAAT GSIFA+S+Q      SVS  N +PSV+  L S+F GASL    PK  K V++TGK
Sbjct: 1   MAATTGSIFASSTQRFPTVTSVSGTNGSPSVAGRLASNFMGASLRSRLPKMGKVVKVTGK 60

Query: 61  VTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKL 120
           V+AA   AT P EE +E   PSWAMFELG+APVYWKTMNGLPP SGEKLK+FYNP A KL
Sbjct: 61  VSAAAV-ATTPVEETKEVKLPSWAMFELGRAPVYWKTMNGLPPSSGEKLKLFYNPVASKL 119

Query: 121 LPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHG---MYYFTD 176
           +PNEDFGIGFNGGFNQP MCGGEPRAML+K RG+ D P YTIQIC+PKH    ++ FT+
Sbjct: 120 VPNEDFGIGFNGGFNQPIMCGGEPRAMLKKARGKADRPIYTIQICIPKHAVNLIFSFTN 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553199|ref|XP_002517642.1| conserved hypothetical protein [Ricinus communis] gi|223543274|gb|EEF44806.1| conserved hypothetical protein [Ricinus communis]

 Score =  234 bits (598), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 140/178 (78%), Gaps = 6/178 (3%)

Query: 2   AATAGSIFAASSQFASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGKV 61
           A+T+ S+F  ++Q  SATR +    A PSVS++LG++F GASL  SS K+ +TV+I+ +V
Sbjct: 3   ASTSASLFKLATQPYSATRLIP---ANPSVSNSLGTNFIGASLQVSSSKKNRTVKISRRV 59

Query: 62  TAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLL 121
           TAAV  A  P EEI EY  PSWAMFELG+APVYWKTMNGLPP SGEKLK+FYNP AKKL 
Sbjct: 60  TAAVVVAPTPSEEITEYALPSWAMFELGRAPVYWKTMNGLPPASGEKLKLFYNPAAKKLN 119

Query: 122 PNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHG---MYYFTD 176
           PN++FGIGFNGGFNQP MCGGEPRAML+K RG+ D P YTIQICVPKH    ++ FT+
Sbjct: 120 PNKEFGIGFNGGFNQPIMCGGEPRAMLKKTRGKADPPIYTIQICVPKHAVNLIFSFTN 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054336|ref|XP_002298209.1| predicted protein [Populus trichocarpa] gi|222845467|gb|EEE83014.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/184 (62%), Positives = 135/184 (73%), Gaps = 8/184 (4%)

Query: 1   MAATAGSIFAASSQFASATRSVS---CRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRI 57
           MAAT  SIF  S+Q    TR ++     NA PSVS+TL SSF G+SL RS+ K+K+ V+I
Sbjct: 1   MAATGASIFQISTQPRVFTRPITTANINNANPSVSNTLASSFIGSSLQRSTTKKKRAVKI 60

Query: 58  TGKVTAAVTTATNP--YEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNP 115
             KV AA          EE++EY RP+WAMFELG APV+WKTMNGLPP SGE LK+FYNP
Sbjct: 61  GRKVIAAAAVTVATPSREEVKEYARPTWAMFELGSAPVFWKTMNGLPPSSGENLKLFYNP 120

Query: 116 YAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHG---MY 172
            A KL+PNE+FGI FNGGFNQP MCGGEPRAMLRK RG+ D PFYTIQICVPKH    ++
Sbjct: 121 AANKLVPNEEFGIAFNGGFNQPIMCGGEPRAMLRKVRGKADPPFYTIQICVPKHAVNLIF 180

Query: 173 YFTD 176
            FT+
Sbjct: 181 SFTN 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114149950|gb|ABI51594.1| chloroplast post-illumination chlorophyll fluorescence increase protein [Nicotiana tabacum]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 120/155 (77%), Gaps = 1/155 (0%)

Query: 17  SATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIE 76
           SATRS S  NATP+VS+   +SF GA L R  P  +K VRI G + AA   AT+P EE++
Sbjct: 12  SATRSASNSNATPTVSNVYATSFMGAHLRRCYPATRKLVRINGGIVAAAV-ATSPAEEVK 70

Query: 77  EYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQ 136
           EY+ P+WA F+LG+APVYWKTMNGLPP +GE+LK+FYNP A  ++PNEDFGI FNGGFNQ
Sbjct: 71  EYSLPTWAKFDLGRAPVYWKTMNGLPPTAGERLKLFYNPAANNMVPNEDFGIAFNGGFNQ 130

Query: 137 PFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGM 171
           P MCGGEPRAML K RG+ D P YTIQIC+PKH +
Sbjct: 131 PIMCGGEPRAMLMKTRGKADPPIYTIQICIPKHAL 165

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072944|gb|ACJ84832.1| unknown [Medicago truncatula]

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 129/173 (74%), Gaps = 9/173 (5%)

Query: 1   MAATAGSIFAASSQ--FASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRIT 58
           MAAT  SIFA+S+Q  F+  TRS        S+++T GS+F   SLPR  P +++ V++ 
Sbjct: 1   MAATNASIFASSTQPCFSVTTRS-------HSITNTFGSNFLNVSLPRCYPMKERHVKVR 53

Query: 59  GKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAK 118
             V AA   AT+P EEI+EY  PSWAMFELGKA VYWKT NG+ P SGEKLK+FYNP A 
Sbjct: 54  HAVNAAAAVATSPTEEIQEYKLPSWAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAA 113

Query: 119 KLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGM 171
           +L PNE+FGI FNGGFNQP MCGGEPRAMLRK+RG+ DSP Y+IQICVPKH +
Sbjct: 114 QLAPNEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQICVPKHAL 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468177|ref|XP_003604373.1| hypothetical protein MTR_4g010140 [Medicago truncatula] gi|217073576|gb|ACJ85148.1| unknown [Medicago truncatula] gi|355505428|gb|AES86570.1| hypothetical protein MTR_4g010140 [Medicago truncatula] gi|388504280|gb|AFK40206.1| unknown [Medicago truncatula]

 Score =  211 bits (537), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 129/173 (74%), Gaps = 9/173 (5%)

Query: 1   MAATAGSIFAASSQ--FASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRIT 58
           MAAT  SIFA+S+Q  F+  TRS S       +++T GS+F   SLPR  P +++ V++ 
Sbjct: 1   MAATNASIFASSTQPCFSVTTRSHS-------ITNTFGSNFLNVSLPRCYPMKERHVKVR 53

Query: 59  GKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAK 118
             V AA   AT+P EEI+EY  PSWAMFELGKA VYWKT NG+ P SGEKLK+FYNP A 
Sbjct: 54  HVVNAAAAVATSPTEEIQEYKLPSWAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAA 113

Query: 119 KLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGM 171
           +L PNE+FGI FNGGFNQP MCGGEPRAMLRK+RG+ DSP Y+IQICVPKH +
Sbjct: 114 QLAPNEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQICVPKHAL 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468179|ref|XP_003604374.1| hypothetical protein MTR_4g010140 [Medicago truncatula] gi|355505429|gb|AES86571.1| hypothetical protein MTR_4g010140 [Medicago truncatula]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 129/173 (74%), Gaps = 9/173 (5%)

Query: 1   MAATAGSIFAASSQ--FASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRIT 58
           MAAT  SIFA+S+Q  F+  TRS        S+++T GS+F   SLPR  P +++ V++ 
Sbjct: 1   MAATNASIFASSTQPCFSVTTRS-------HSITNTFGSNFLNVSLPRCYPMKERHVKVR 53

Query: 59  GKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAK 118
             V AA   AT+P EEI+EY  PSWAMFELGKA VYWKT NG+ P SGEKLK+FYNP A 
Sbjct: 54  HVVNAAAAVATSPTEEIQEYKLPSWAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAA 113

Query: 119 KLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGM 171
           +L PNE+FGI FNGGFNQP MCGGEPRAMLRK+RG+ DSP Y+IQICVPKH +
Sbjct: 114 QLAPNEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQICVPKHAL 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490544|gb|AFK33338.1| unknown [Medicago truncatula]

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 128/173 (73%), Gaps = 9/173 (5%)

Query: 1   MAATAGSIFAASSQ--FASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRIT 58
           MAAT  SIFA+S+Q  F+  TRS        S+++T GS+F   SLPR  P +++ V++ 
Sbjct: 1   MAATNASIFASSTQPCFSVTTRS-------HSITNTFGSNFPNVSLPRCYPMKERHVKVR 53

Query: 59  GKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAK 118
             V AA   AT+P EEI+ Y  PSWAMFELGKA VYWKT NG+ P SGEKLK+FYNP A 
Sbjct: 54  HVVNAAAAVATSPTEEIQGYKLPSWAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAA 113

Query: 119 KLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGM 171
           +L PNE+FGI FNGGFNQP MCGGEPRAMLRK+RG+ DSP Y+IQICVPKH +
Sbjct: 114 QLAPNEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQICVPKHAL 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807532|ref|NP_001240893.1| uncharacterized protein LOC100790141 [Glycine max] gi|255639039|gb|ACU19820.1| unknown [Glycine max]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/171 (59%), Positives = 125/171 (73%), Gaps = 8/171 (4%)

Query: 1   MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGK 60
           MAAT  SIFA+S+Q        SC   +P++S+TL S F   S PRS   +KK V+ +  
Sbjct: 1   MAATNASIFASSTQ--------SCLPVSPTISNTLVSPFLNVSSPRSYLVKKKHVKFSKH 52

Query: 61  VTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKL 120
           ++AA    T   EEI+EY  PSWA FE+G+A VYWKTMNGLPP SGEKLK+FYNP A +L
Sbjct: 53  ISAAAVATTTTTEEIQEYKLPSWAKFEIGRAAVYWKTMNGLPPSSGEKLKLFYNPAATQL 112

Query: 121 LPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGM 171
           +PNE+FGI FNGGFNQP MCGGEPRAMLRK RG+ D+P Y+IQIC+PKH +
Sbjct: 113 VPNEEFGIAFNGGFNQPIMCGGEPRAMLRKYRGKADAPIYSIQICIPKHAL 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072380|gb|ACJ84550.1| unknown [Medicago truncatula]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 128/173 (73%), Gaps = 9/173 (5%)

Query: 1   MAATAGSIFAASSQ--FASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRIT 58
           MAAT  SIFA+S+Q  F+  TRS        S+++T GS+F   SLPR  P +++ V++ 
Sbjct: 1   MAATNASIFASSTQPCFSVTTRS-------HSITNTFGSNFLNVSLPRCYPMKERHVKVR 53

Query: 59  GKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAK 118
             V AA   AT+P EEI+EY  PS AMFELGKA VYWKT NG+ P SGEKLK+FYNP A 
Sbjct: 54  HVVNAAAAVATSPTEEIQEYKLPSRAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAA 113

Query: 119 KLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGM 171
           +L PNE+FGI FNGGFNQP MCGGEPRAMLRK+RG+ DSP Y+IQICVPKH +
Sbjct: 114 QLAPNEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQICVPKHAL 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2093287	268	PIFI "AT3G15840" [Arabidopsis	0.751	0.507	0.605	5.2e-42

TAIR|locus:2093287 PIFI "AT3G15840" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 86/142 (60%), Positives = 102/142 (71%)

Query:    30 SVSSTLGSSFKGASLPRSSPKQKKTVRITGKXXXXXXXXXNPYEEIEEYTRPSWAMFELG 89
             S  S L SS  G  L R  P++K  +++             P EEI+EY  PSWAMFE+G
Sbjct:    20 SKRSFLYSSRIGPIL-RRFPRKKLDLQVKAVATTLA-----PLEEIKEYKLPSWAMFEMG 73

Query:    90 KAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLR 149
              APVYWKTMNGLPP SGEKLK+FYNP A KL  NED+G+ FNGGFNQP MCGGEPRAML+
Sbjct:    74 TAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLNEDYGVAFNGGFNQPIMCGGEPRAMLK 133

Query:   150 KNRGQNDSPFYTIQICVPKHGM 171
             K+RG+ DSP YT+QIC+PKH +
Sbjct:   134 KDRGKADSPIYTMQICIPKHAV 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      181       155   0.00096  105 3  11 22  0.38    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  159 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.87u 0.12s 13.99t   Elapsed:  00:00:01
  Total cpu time:  13.87u 0.12s 13.99t   Elapsed:  00:00:01
  Start:  Mon May 20 16:07:06 2013   End:  Mon May 20 16:07:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010478 "chlororespiration" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I0106	SubName- Full=Putative uncharacterized protein; (286 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.02080025	hypothetical protein (465 aa)				•			•		0.410

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	95.3
PLN02316	1036	synthase/transferase	93.91
PLN02316	1036	synthase/transferase	89.22

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=95.30  E-value=0.019  Score=41.23  Aligned_cols=66  Identities=20%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             CCceEEEEccccCCCCCCcceeeeecCCCCCceecCCchhhhhhhhhCCCCCCceEEEEeecCceeeEEEe
Q 030195          106 GEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTD  176 (181)
Q Consensus       106 Ge~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGePR~M~~k~RGkad~PiYtI~I~vPkHa~~L~f~  176 (181)
                      |+.++|||||..+.|.-..  -|=+.+|||. -. ....-.|.+... .....-+...|.||+.|..|-|-
T Consensus         1 G~~vtVyYn~~~~~l~g~~--~v~~~~G~n~-W~-~~~~~~m~~~~~-~~~~~~~~~tv~vP~~a~~~dfv   66 (87)
T PF03423_consen    1 GETVTVYYNPSLTALSGAP--NVHLHGGFNR-WT-HVPGFGMTKMCV-PDEGGWWKATVDVPEDAYVMDFV   66 (87)
T ss_dssp             -SEEEEEE---E-SSS-S---EEEEEETTS--B--SSS-EE-EEESS----TTEEEEEEE--TTTSEEEEE
T ss_pred             CCEEEEEEEeCCCCCCCCC--cEEEEecCCC-CC-cCCCCCcceeee-eecCCEEEEEEEEcCCceEEEEE
Confidence            7899999999877775222  2344444442 11 111123333221 11167899999999998766653

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>PLN02316 synthase/transferase

Probab=93.91  E-value=0.11  Score=52.27  Aligned_cols=71  Identities=23%  Similarity=0.348  Sum_probs=55.3

Q ss_pred             CCCCCCCCCceEEEEccccCCCCCCcceeeeecCCCCCceecCC--chhhhhhhhhCCCCCCceEEEEeecCceeeEEE
Q 030195           99 NGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGG--EPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFT  175 (181)
Q Consensus        99 nGlpP~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGG--ePR~M~~k~RGkad~PiYtI~I~vPkHa~~L~f  175 (181)
                      .=+-|.+|+.++|||||.-+-|.-..+  |=|-||||.=.---|  .|-.|.+.+-|    .-+.-.+.||.-|..+-|
T Consensus       483 eP~~~~aG~~v~v~Yn~~~t~l~~~~e--v~~~g~~NrWth~~~~~~~~~m~~~~~g----~~~~a~v~vP~da~~mdf  555 (1036)
T PLN02316        483 EPLEVQAGTTVTVLYNPANTVLNGKPE--VWFRGSFNRWTHRLGPLPPQKMVPADNG----SHLKATVKVPLDAYMMDF  555 (1036)
T ss_pred             cCCCCCCCCEEEEEECCCCCcCCCCce--EEEEccccCcCCCCCCCCceeeeecCCC----ceEEEEEEccccceEEEE
Confidence            345689999999999999888875544  779999997555555  58889888776    577889999998765543

>PLN02316 synthase/transferase

Probab=89.22  E-value=0.96  Score=45.85  Aligned_cols=75  Identities=16%  Similarity=0.276  Sum_probs=52.4

Q ss_pred             CCCCCCCCCceEEEEccccCCCCCCcceeeeecCCCCCceecCCchhhhhhhhhCCCCCCceEEEEeecCceeeEEEee
Q 030195           99 NGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTDL  177 (181)
Q Consensus        99 nGlpP~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGePR~M~~k~RGkad~PiYtI~I~vPkHa~~L~f~~  177 (181)
                      ....|-+|+.++|||||+-+.|.-.+  -|=+.||||.=..-.+.+-.|.+-+.+.-|  .+.-.|.||+-|..|-|-+
T Consensus       321 ~P~~~~aG~~v~lyYN~~~~~L~~~~--~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~--ww~a~v~vP~~A~~mDfVF  395 (1036)
T PLN02316        321 EPSEFKAGDTVKLYYNRSSGPLAHST--EIWIHGGYNNWIDGLSIVEKLVKSEEKDGD--WWYAEVVVPERALVLDWVF  395 (1036)
T ss_pred             cCCCcCCCCEEEEEECCCCCCCCCCC--cEEEEEeEcCCCCCCcccceeecccCCCCC--EEEEEEecCCCceEEEEEE
Confidence            35678999999999999999986443  467788888644333322234443433333  8899999999998887754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d2gf3a2	104	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	85.05

>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=85.05  E-value=0.38  Score=31.85  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             CchhhhccCCcceE-EEecC----CCCCCCCCceEEEEccccCCCCCC
Q 030195           81 PSWAMFELGKAPVY-WKTMN----GLPPMSGEKLKIFYNPYAKKLLPN  123 (181)
Q Consensus        81 psWa~fElG~apVy-Wkt~n----GlpP~sGe~L~lfyNp~as~l~PN  123 (181)
                      .....|..++.||| |+..+    |+|..-|..+||.+.=......|+
T Consensus        14 ~~~~~~~~~~fP~fi~~~~~~~~YGfP~~~~~g~Ki~~~~~g~~~dPd   61 (104)
T d2gf3a2          14 DESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPD   61 (104)
T ss_dssp             CHHHHBGGGTCCEEEEEETTEEEEEECBSTTCCEEEEESSCCEECCTT
T ss_pred             CCccccccCCCCEEEEECCCCeEEecCCCCCCceEEEEecCCCccCcc
Confidence            34556777888888 77776    899999999999886333333443