Citrus Sinensis ID: 030198

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MEITDKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVCDY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHcccccccccccEEEEEEcccccccccccHHHHccEEEEEccHHHHHHHccccccccccccccEEEEEEccccccccccccccccEEEEEEccccHHHHHHHHHHHHHcccccccccccEEEEEEcccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHEEEEEEEEEHHHHHHHHHHcccHHHcccccEEEEEEcccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEccccccHHccc
Coil and Loop (DISEMBL)
meitdkkesdinnTQTVADSVDNNNKDAEERQARELKAnlhplknkfvfwytrrtpgvrtqtsyedNIKKIVDFSTVEGFWVCYchlarpsllpsptdlhlfkegirplwedsancnggkWIIRFKKVVSGRFWEDLVLALVGdqldygdniCGAVLSIRFNEDILSVWNrnasdhqvcdy
Flexible Loop (DISEMBL)
meitdkkesdinntqtvadsvdnnnKDAEERQARelkanlhplknkfvfwytrrtpgvrtqtsyednIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNrnasdhqvcdy
Low Complexity Region (SEG)
MEITDKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVCDY
Disordered region (IsUnstruct)
***************************************LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRN*********
Disordered Region (DISOPRED)
******************************************LKNKFVFWYT***************IKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNAS*******
Disordered Region (DISEMBL)
*********DINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVCDY
Disordered Region (DISPRO)
*************************************ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNAS*H*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEITDKKESDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVCDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q9FK59	221	Eukaryotic translation in	yes	no	0.972	0.796	0.718	1e-72
A3RCV9	232	Eukaryotic translation in	N/A	no	0.812	0.633	0.844	2e-71
Q10NQ9	227	Eukaryotic translation in	yes	no	0.790	0.629	0.826	2e-68
O60573	245	Eukaryotic translation in	yes	no	0.950	0.702	0.482	2e-45
Q8BMB3	245	Eukaryotic translation in	yes	no	0.751	0.555	0.569	7e-45
Q22888	212	Eukaryotic translation in	yes	no	0.762	0.650	0.456	3e-33
O23252	235	Eukaryotic translation in	no	no	0.734	0.565	0.426	1e-27
P29557	215	Eukaryotic translation in	N/A	no	0.839	0.706	0.383	2e-26
O81481	218	Eukaryotic translation in	N/A	no	0.740	0.614	0.407	5e-26
Q03389	209	Eukaryotic translation in	N/A	no	0.740	0.641	0.415	3e-24

>sp|Q9FK59|IF4E5_ARATH Eukaryotic translation initiation factor NCBP OS=Arabidopsis thaliana GN=NCBP PE=2 SV=1

 Score =  271 bits (694), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 152/181 (83%), Gaps = 5/181 (2%)

Query: 1   MEITDKKESDINNTQTVADSVDNN---NKDAEERQARELKANLHPLKNKFVFWYTRRTPG 57
           ME+ D+++ +I ++  + DS+ ++   +  +EER++RELK   HPL+ KF  WYTRRTPG
Sbjct: 1   MEVLDRRDDEIRDSGNM-DSIKSHYVTDSVSEERRSRELKDGDHPLRYKFSIWYTRRTPG 59

Query: 58  VRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117
           VR Q SYEDNIKK+V+FSTVEGFW CYCHLAR SLLPSPTDLH FK+GIRPLWED ANCN
Sbjct: 60  VRNQ-SYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCN 118

Query: 118 GGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQ 177
           GGKWIIRF KVVS RFWEDL+LALVGDQLD  DNICGAVLS+RFNEDI+SVWNRNASDHQ
Sbjct: 119 GGKWIIRFSKVVSARFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQ 178

Query: 178 V 178
            
Sbjct: 179 A 179

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.
Arabidopsis thaliana (taxid: 3702)

>sp|A3RCV9|IF4E3_WHEAT Eukaryotic translation initiation factor NCBP OS=Triticum aestivum GN=NCBP PE=2 SV=1

 Score =  267 bits (683), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 31  RQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARP 90
           R+ RELKA LHPL+ K V WYTRRTPG R+Q SYEDNIKKIVDFSTVE FWVCYCHLARP
Sbjct: 44  RRNRELKAGLHPLRRKLVLWYTRRTPGTRSQ-SYEDNIKKIVDFSTVESFWVCYCHLARP 102

Query: 91  SLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGD 150
           S LPSPTDLHLFKEG+RPLWED AN NGGKWIIRFKK VSGRFWEDLVL LVGDQLDY D
Sbjct: 103 SSLPSPTDLHLFKEGVRPLWEDPANRNGGKWIIRFKKAVSGRFWEDLVLVLVGDQLDYSD 162

Query: 151 NICGAVLSIRFNEDILSVWNRNASDHQV 178
           ++CG VLS RFNEDILSVWNRNASDHQ 
Sbjct: 163 DVCGIVLSCRFNEDILSVWNRNASDHQA 190

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|Q10NQ9|IF4E3_ORYSJ Eukaryotic translation initiation factor NCBP OS=Oryza sativa subsp. japonica GN=NCBP PE=2 SV=1

 Score =  258 bits (659), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 126/144 (87%), Gaps = 1/144 (0%)

Query: 36  LKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPS 95
           LKA  HPL+ +FV WYTRRTPG R+Q SYEDNIKKIVDFSTVE FWVCYCHL RP  LPS
Sbjct: 44  LKAGFHPLRRRFVLWYTRRTPGARSQ-SYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPS 102

Query: 96  PTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGA 155
           PTDLHLFKEGIRPLWED AN +GGKWIIRFKK VSGRFWEDLVL LVGDQLDY D++CG 
Sbjct: 103 PTDLHLFKEGIRPLWEDPANRSGGKWIIRFKKTVSGRFWEDLVLVLVGDQLDYSDDVCGV 162

Query: 156 VLSIRFNEDILSVWNRNASDHQVC 179
           VLS+RFNEDILSVWNRNASDHQ  
Sbjct: 163 VLSVRFNEDILSVWNRNASDHQAV 186

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O60573|IF4E2_HUMAN Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1

 Score =  181 bits (460), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 121/176 (68%), Gaps = 4/176 (2%)

Query: 5   DKKESDINNTQTVAD---SVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
           D  +++ N+TQ   +   +  + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct: 15  DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query: 62  T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
           + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct: 75  SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query: 121 WIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDH 176
           WIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD 
Sbjct: 135 WIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQ 190

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Homo sapiens (taxid: 9606)

>sp|Q8BMB3|IF4E2_MOUSE Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1

 Score =  179 bits (455), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 103/137 (75%), Gaps = 1/137 (0%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
           HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D 
Sbjct: 54  HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDF 113

Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSI 159
           HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+
Sbjct: 114 HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSV 173

Query: 160 RFNEDILSVWNRNASDH 176
           RF EDI+S+WN+ ASD 
Sbjct: 174 RFQEDIISIWNKTASDQ 190

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Mus musculus (taxid: 10090)

>sp|Q22888|IF4E4_CAEEL Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1

 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 85/138 (61%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           H L+  + F Y  R  G      Y   ++ +    +VE FW    H  RP+ +    D+H
Sbjct: 31  HQLQYSYTFSYFMRPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIH 90

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR 160
            FK G++P+WED ANC GGKWIIR KK +S R WE+L++A++G+Q   GD +CGAV SIR
Sbjct: 91  FFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIWENLLMAIIGEQFLVGDELCGAVCSIR 150

Query: 161 FNEDILSVWNRNASDHQV 178
             EDI+S+WNRNA D  V
Sbjct: 151 NQEDIISLWNRNADDTPV 168

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. All 5 eIF4E proteins bind monomethyl cap structures. Only ife-1, ife-2 and ife-5 bind trimethyl cap structures which result from trans-splicing. Translation of trimethyl cap structure mRNAs may be regulated by intracellular redox state; disulfide bonds change the width and depth of the cap-binding cavity determining selectivity to mRNA caps.

Caenorhabditis elegans (taxid: 6239)

>sp|O23252|IF4E1_ARATH Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=1 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 41  HPLKNKFVFWYTRRTPGVRT-QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
           HPL++ + FW+    P V++ QTS+  +++ +  FSTVE FW  Y ++  PS L    D 
Sbjct: 60  HPLEHSWTFWFDN--PAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHGADF 117

Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSI 159
           + FK  I P WED    NGGKW + F K  S + W   +LAL+G+Q D+GD ICGAV++I
Sbjct: 118 YCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFDHGDEICGAVVNI 177

Query: 160 RFNEDILSVWNRNASD 175
           R  ++ +S+W +NAS+
Sbjct: 178 RGKQERISIWTKNASN 193

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Arabidopsis thaliana (taxid: 3702)

>sp|P29557|IF4E1_WHEAT Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 7/159 (4%)

Query: 17  VADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFST 76
           +AD  D ++  A  R         HPL+N + FW+     G   Q ++   I  I  FST
Sbjct: 22  IADDGDGSSAAAAGR------ITAHPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFST 74

Query: 77  VEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWED 136
           VE FW  Y ++  PS L    D H FK  I P WED    NGGKW I   +  S  FW  
Sbjct: 75  VEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLH 134

Query: 137 LVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
            +LA++G+Q D+GD ICGAV+S+R  ++ +++W +NA++
Sbjct: 135 TLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAAN 173

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|O81481|IF4E1_MAIZE Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL++ + FW+       + Q ++  +I+ I  FSTVE FW  Y ++  PS L    D H
Sbjct: 43  HPLEHSWTFWFDNPQSKSK-QAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFH 101

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR 160
            FK  I P WED    NGGKW I   +  S  FW   +LA++G+Q DYGD ICGAV+S+R
Sbjct: 102 CFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDYGDEICGAVVSVR 161

Query: 161 FNEDILSVWNRNASD 175
             ++ +++W +NA++
Sbjct: 162 GKQERIAIWTKNAAN 176

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|Q03389|IF4E2_WHEAT Eukaryotic translation initiation factor isoform 4E-2 OS=Triticum aestivum PE=1 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 41  HPLKNKFVFWY---TRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPT 97
           H L+ ++ FWY   T+  PG    TS    +KK   F TVE FW  Y  + RPS L    
Sbjct: 33  HKLQRQWTFWYDIQTKPKPGAAWGTS----LKKGYTFDTVEEFWCLYDQIFRPSKLVGSA 88

Query: 98  DLHLFKEGIRPLWEDSANCNGGKW-IIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAV 156
           D HLFK G+ P WED    NGGKW +I  +K      W +  +AL+G+Q D    ICG V
Sbjct: 89  DFHLFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVV 148

Query: 157 LSIRFNEDILSVWNRNASDHQV 178
            S+R  +D LS+W + AS+  V
Sbjct: 149 ASVRQRQDKLSLWTKTASNEAV 170

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
225441601	225	PREDICTED: eukaryotic translation initia	0.983	0.791	0.857	1e-86
356498848	231	PREDICTED: eukaryotic translation initia	0.939	0.735	0.870	6e-86
351721708	231	uncharacterized protein LOC100499744 [Gl	0.939	0.735	0.864	1e-85
255630990	231	unknown [Glycine max]	0.939	0.735	0.864	2e-85
224125846	226	predicted protein [Populus trichocarpa]	0.977	0.783	0.830	2e-85
156153162	233	cap-binding protein-like protein [Phaseo	0.928	0.721	0.863	7e-85
255568896	222	eukaryotic translation initiation factor	0.983	0.801	0.835	4e-84
357497325	226	Eukaryotic translation initiation factor	0.906	0.725	0.861	2e-79
449446752	238	PREDICTED: eukaryotic translation initia	0.928	0.705	0.814	7e-79
3108209	221	novel cap-binding protein nCBP [Arabidop	0.972	0.796	0.723	5e-72

>gi|225441601|ref|XP_002281697.1| PREDICTED: eukaryotic translation initiation factor 4E type 3 [Vitis vinifera] gi|297739767|emb|CBI29949.3| unnamed protein product [Vitis vinifera]

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/183 (85%), Positives = 169/183 (92%), Gaps = 5/183 (2%)

Query: 1   MEITDKKESDIN--NTQTVADSVD-NNNKDAE--ERQARELKANLHPLKNKFVFWYTRRT 55
           MEIT+KKE++    N Q+V ++   N++K+AE  ERQAR+LKA LHPLK+KFVFWYTRRT
Sbjct: 1   MEITEKKEAESKGLNPQSVTEATSFNSDKEAEDRERQARDLKAGLHPLKHKFVFWYTRRT 60

Query: 56  PGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSAN 115
           PGVRTQTSYEDNIKKIVDFSTVEGFW+CYCHLARPS LPSPTDLHLFKEGIRPLWEDSAN
Sbjct: 61  PGVRTQTSYEDNIKKIVDFSTVEGFWICYCHLARPSALPSPTDLHLFKEGIRPLWEDSAN 120

Query: 116 CNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
           CNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD
Sbjct: 121 CNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 180

Query: 176 HQV 178
           HQ 
Sbjct: 181 HQA 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498848|ref|XP_003518260.1| PREDICTED: eukaryotic translation initiation factor 4E type 3-like [Glycine max]

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 148/170 (87%), Positives = 161/170 (94%)

Query: 9   SDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNI 68
           + ++++  +A ++D+NNK+ EERQARELKA LHPLK+KFVFWYTRRTPGVR QTSYEDNI
Sbjct: 20  TTLDSSSQLASALDSNNKEIEERQARELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNI 79

Query: 69  KKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKV 128
           KKIV+FSTVEGFWVCYCHLARP+ LPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKV
Sbjct: 80  KKIVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKV 139

Query: 129 VSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQV 178
           VSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQ 
Sbjct: 140 VSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQA 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721708|ref|NP_001235427.1| uncharacterized protein LOC100499744 [Glycine max] gi|255626233|gb|ACU13461.1| unknown [Glycine max]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 147/170 (86%), Positives = 161/170 (94%)

Query: 9   SDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNI 68
           + ++++  +A ++D++NK+ EERQARELKA LHPLK+KFVFWYTRRTPGVR QTSYEDNI
Sbjct: 20  TTLDSSSQLASALDSSNKEIEERQARELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNI 79

Query: 69  KKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKV 128
           KKIV+FSTVEGFWVCYCHLARP+ LPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKV
Sbjct: 80  KKIVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKV 139

Query: 129 VSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQV 178
           VSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQ 
Sbjct: 140 VSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQA 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630990|gb|ACU15859.1| unknown [Glycine max]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 147/170 (86%), Positives = 160/170 (94%)

Query: 9   SDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNI 68
           + ++++  +A ++D+NNK+ EERQARELKA LHPLK+KFVFWYTRRTPGVR QTSYEDNI
Sbjct: 20  TTLDSSSQLASALDSNNKEIEERQARELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNI 79

Query: 69  KKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKV 128
           KKIV+FSTVEGFWVCYCHLARP+ LPSPTDLHLFKEGIRPLWEDS NCNGGKWIIRFKKV
Sbjct: 80  KKIVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSTNCNGGKWIIRFKKV 139

Query: 129 VSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQV 178
           VSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQ 
Sbjct: 140 VSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQA 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125846|ref|XP_002319689.1| predicted protein [Populus trichocarpa] gi|222858065|gb|EEE95612.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 167/183 (91%), Gaps = 6/183 (3%)

Query: 1   MEITDKKESDINNTQTVADSVDNN------NKDAEERQARELKANLHPLKNKFVFWYTRR 54
           MEI++KKE + NN  +   ++D++      +K++EERQARELKA LHPLKNKF+FWYTRR
Sbjct: 1   MEISEKKEPENNNNISQTATLDSSSTTDIIDKESEERQARELKAGLHPLKNKFIFWYTRR 60

Query: 55  TPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA 114
           TPGVRTQTSYEDNIKKIV+FSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA
Sbjct: 61  TPGVRTQTSYEDNIKKIVEFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA 120

Query: 115 NCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNAS 174
           NCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDY D+ICGAVLSIR+NEDILSVWNRNAS
Sbjct: 121 NCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYSDDICGAVLSIRYNEDILSVWNRNAS 180

Query: 175 DHQ 177
           D Q
Sbjct: 181 DRQ 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156153162|gb|ABU54819.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153164|gb|ABU54820.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153166|gb|ABU54821.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153168|gb|ABU54822.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153172|gb|ABU54824.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153174|gb|ABU54825.1| cap-binding protein-like protein [Phaseolus vulgaris]

 Score =  318 bits (814), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 145/168 (86%), Positives = 159/168 (94%)

Query: 11  INNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKK 70
           ++++  +A ++D+N+K+ EERQ+RELKA LHPLK+KFVFWYTRRTPGVR QTSYEDNIKK
Sbjct: 24  LDSSSQLASALDSNSKETEERQSRELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNIKK 83

Query: 71  IVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS 130
           IV+FSTVEGFWVCYCHL RP+ LPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS
Sbjct: 84  IVEFSTVEGFWVCYCHLGRPATLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS 143

Query: 131 GRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQV 178
           GRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQ 
Sbjct: 144 GRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQA 191

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568896|ref|XP_002525418.1| eukaryotic translation initiation factor 4e type, putative [Ricinus communis] gi|223535231|gb|EEF36908.1| eukaryotic translation initiation factor 4e type, putative [Ricinus communis]

 Score =  315 bits (808), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 152/182 (83%), Positives = 162/182 (89%), Gaps = 4/182 (2%)

Query: 1   MEITDKKESDINNTQTVADSVDNN---NKDAEERQARELKANLHPLKNKFVFWYTRRTPG 57
           MEIT+KKE++ NN     DS  N+   +K+ EERQARELKA LHPLK+KFVFWYTRRTPG
Sbjct: 1   MEITEKKETEKNNKNNT-DSASNDLIMDKETEERQARELKAGLHPLKHKFVFWYTRRTPG 59

Query: 58  VRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117
           VRTQTSYEDNIKKIV+FSTVEGFWVCYCHLAR S LPSPTDLHLFKEGIRPLWEDSAN N
Sbjct: 60  VRTQTSYEDNIKKIVEFSTVEGFWVCYCHLARSSALPSPTDLHLFKEGIRPLWEDSANSN 119

Query: 118 GGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQ 177
           GGKWIIRFKK VS RFWEDLVLALVGDQL+YGDNICGAVLSIRFNEDI+SVWNRNASDHQ
Sbjct: 120 GGKWIIRFKKAVSARFWEDLVLALVGDQLEYGDNICGAVLSIRFNEDIVSVWNRNASDHQ 179

Query: 178 VC 179
             
Sbjct: 180 AV 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497325|ref|XP_003618951.1| Eukaryotic translation initiation factor 4E type 3 [Medicago truncatula] gi|355493966|gb|AES75169.1| Eukaryotic translation initiation factor 4E type 3 [Medicago truncatula] gi|388491190|gb|AFK33661.1| unknown [Medicago truncatula]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/166 (86%), Positives = 151/166 (90%), Gaps = 2/166 (1%)

Query: 14  TQTVADSVDNNN-KDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIV 72
           T  + DS D+ N K+ EERQ+RELKA LHPLK+KFVFWYTRR PG+R Q SYEDNIKKIV
Sbjct: 20  THQIVDSSDSYNVKETEERQSRELKAGLHPLKSKFVFWYTRRVPGIRNQ-SYEDNIKKIV 78

Query: 73  DFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGR 132
           +FSTVEGFWVCYCHLARPS LP PTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK VSGR
Sbjct: 79  EFSTVEGFWVCYCHLARPSSLPIPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKAVSGR 138

Query: 133 FWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQV 178
           FWEDLVLALVGDQLDYGDNICGAVLSIRFNEDI+SVWNRNASDHQ 
Sbjct: 139 FWEDLVLALVGDQLDYGDNICGAVLSIRFNEDIVSVWNRNASDHQA 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446752|ref|XP_004141135.1| PREDICTED: eukaryotic translation initiation factor 4E type 3-like [Cucumis sativus]

 Score =  298 bits (762), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 154/178 (86%), Gaps = 10/178 (5%)

Query: 12  NNTQTVADSV-------DNNNKDAEE---RQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
           N+ Q + DS        D N K+AEE   R AR+LK  LHPLK+KF FWYTRRTPGVRTQ
Sbjct: 20  NSAQPLLDSSFQPSLADDTNAKEAEELSERIARDLKDGLHPLKHKFAFWYTRRTPGVRTQ 79

Query: 62  TSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW 121
           TSYEDNIKKIVDFS+VEGFW+ YCHLARP+ LPSPTDLHLFKEGIRPLWEDSANCNGGKW
Sbjct: 80  TSYEDNIKKIVDFSSVEGFWISYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKW 139

Query: 122 IIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC 179
           IIRFKKVVSGRFWEDLVLALVGDQLD+GDNICGAVLSIRFNEDILSVWNRNASDHQ  
Sbjct: 140 IIRFKKVVSGRFWEDLVLALVGDQLDFGDNICGAVLSIRFNEDILSVWNRNASDHQAV 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3108209|gb|AAC17220.1| novel cap-binding protein nCBP [Arabidopsis thaliana]

 Score =  275 bits (703), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 153/181 (84%), Gaps = 5/181 (2%)

Query: 1   MEITDKKESDINNTQTVADSVDNN---NKDAEERQARELKANLHPLKNKFVFWYTRRTPG 57
           ME+ D+++ +I ++  + DS+ ++   +  +EER++RELK  LHPL+ KF  WYTRRTPG
Sbjct: 1   MEVLDRRDDEIRDSGNM-DSIKSHYVTDSVSEERRSRELKDGLHPLRYKFSIWYTRRTPG 59

Query: 58  VRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117
           VR Q SYEDNIKK+V+FSTVEGFW CYCHLAR SLLPSPTDLH FK+GIRPLWED ANCN
Sbjct: 60  VRNQ-SYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCN 118

Query: 118 GGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQ 177
           GGKWIIRF KVVS RFWEDL+LALVGDQLD  DNICGAVLS+RFNEDI+SVWNRNASDHQ
Sbjct: 119 GGKWIIRFSKVVSARFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQ 178

Query: 178 V 178
            
Sbjct: 179 A 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2172339	221	NCBP "novel cap-binding protei	0.966	0.791	0.722	1.4e-69
ZFIN|ZDB-GENE-040426-1728	228	eif4e2rs1 "eukaryotic translat	0.933	0.741	0.494	3.5e-43
UNIPROTKB|B8ZZ50	236	EIF4E2 "Eukaryotic translation	0.944	0.724	0.485	4.5e-43
UNIPROTKB|B8ZZJ9	234	EIF4E2 "Eukaryotic translation	0.944	0.730	0.485	4.5e-43
UNIPROTKB|B9A044	233	EIF4E2 "Eukaryotic translation	0.944	0.733	0.485	4.5e-43
UNIPROTKB|C9JEL3	213	EIF4E2 "Eukaryotic translation	0.944	0.802	0.485	4.5e-43
UNIPROTKB|O60573	245	EIF4E2 "Eukaryotic translation	0.944	0.697	0.485	4.5e-43
MGI|MGI:1914440	245	Eif4e2 "eukaryotic translation	0.933	0.689	0.480	7.3e-43
UNIPROTKB|Q0II31	236	EIF4E2 "Eukaryotic translation	0.933	0.716	0.480	9.3e-43
UNIPROTKB|F1SMT1	245	EIF4E2 "Uncharacterized protei	0.933	0.689	0.480	9.3e-43

TAIR|locus:2172339 NCBP "novel cap-binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 130/180 (72%), Positives = 152/180 (84%)

Query:     1 MEITDKKESDINNTQTVADSVDNN---NKDAEERQARELKANLHPLKNKFVFWYTRRTPG 57
             ME+ D+++ +I ++  + DS+ ++   +  +EER++RELK   HPL+ KF  WYTRRTPG
Sbjct:     1 MEVLDRRDDEIRDSGNM-DSIKSHYVTDSVSEERRSRELKDGDHPLRYKFSIWYTRRTPG 59

Query:    58 VRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117
             VR Q SYEDNIKK+V+FSTVEGFW CYCHLAR SLLPSPTDLH FK+GIRPLWED ANCN
Sbjct:    60 VRNQ-SYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCN 118

Query:   118 GGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQ 177
             GGKWIIRF KVVS RFWEDL+LALVGDQLD  DNICGAVLS+RFNEDI+SVWNRNASDHQ
Sbjct:   119 GGKWIIRFSKVVSARFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQ 178

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-040426-1728 eif4e2rs1 "eukaryotic translation initiation factor 4E family member 2 related sequence 1" [Danio rerio (taxid:7955)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 85/172 (49%), Positives = 115/172 (66%)

Query:     5 DKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQT-S 63
             D +E   NN    A S++NNN +   +      A  HPL+  + FWY+RRTP     T S
Sbjct:    14 DHEEMKDNNESDRA-SINNNNNNIRRKMVTPA-AGEHPLQYNYTFWYSRRTPSRPANTQS 71

Query:    64 YEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWII 123
             YE NI+++   ++VE FW  Y HL RP  L   +D HLFKEGI+P+WED AN NGGKWII
Sbjct:    72 YEQNIRQMGTVASVEQFWKFYSHLVRPGDLTGHSDFHLFKEGIKPMWEDEANKNGGKWII 131

Query:   124 RFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
             R +K ++ RFWE+++LA++G+Q   G+ ICG V+SIRF EDILS+WN+ A+D
Sbjct:   132 RLRKGLASRFWENIILAMLGEQFMVGEEICGVVVSIRFQEDILSIWNKTAND 183

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|B8ZZ50 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 85/175 (48%), Positives = 120/175 (68%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    75 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query:   121 WIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
             WIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD
Sbjct:   135 WIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASD 189

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|B8ZZJ9 EIF4E2 "Eukaryotic translation initiation factor 4E member 2, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 85/175 (48%), Positives = 120/175 (68%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    75 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query:   121 WIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
             WIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD
Sbjct:   135 WIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASD 189

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|B9A044 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 85/175 (48%), Positives = 120/175 (68%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    75 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query:   121 WIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
             WIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD
Sbjct:   135 WIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASD 189

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|C9JEL3 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 85/175 (48%), Positives = 120/175 (68%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    10 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 69

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    70 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 129

Query:   121 WIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
             WIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD
Sbjct:   130 WIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASD 184

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|O60573 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 85/175 (48%), Positives = 120/175 (68%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    75 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query:   121 WIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
             WIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD
Sbjct:   135 WIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASD 189

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000339 "RNA cap binding" evidence=TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

MGI|MGI:1914440 Eif4e2 "eukaryotic translation initiation factor 4E member 2" [Mus musculus (taxid:10090)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 85/177 (48%), Positives = 121/177 (68%)

Query:     5 DKKESDINNTQTVADSVDNNNKDAEERQARELKANL-----HPLKNKFVFWYTRRTPGVR 59
             D  +++ N+TQ   +  +  ++D  +   +  KA +     HPL+  + FWY+RRTPG  
Sbjct:    15 DHDQNEENSTQKDGEK-EKTDRDKSQSSGKR-KAVVPGPAEHPLQYNYTFWYSRRTPGRP 72

Query:    60 TQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG 118
             T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NG
Sbjct:    73 TSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNG 132

Query:   119 GKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
             GKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD
Sbjct:   133 GKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASD 189

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

UNIPROTKB|Q0II31 EIF4E2 "Eukaryotic translation initiation factor 4E family member 2" [Bos taurus (taxid:9913)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 85/177 (48%), Positives = 121/177 (68%)

Query:     5 DKKESDINNTQTVADSVDNNNKDAEERQARELKANL-----HPLKNKFVFWYTRRTPGVR 59
             D  +++ N+TQ   +  +   +D  +  ++  KA +     HPL+  + FWY+RRTPG  
Sbjct:    15 DHDQNEENSTQKDGEK-EKTERDKSQSSSKR-KAVVPGPAEHPLQYNYTFWYSRRTPGRP 72

Query:    60 TQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG 118
             T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NG
Sbjct:    73 TSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNG 132

Query:   119 GKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
             GKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD
Sbjct:   133 GKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASD 189

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1SMT1 EIF4E2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 85/177 (48%), Positives = 121/177 (68%)

Query:     5 DKKESDINNTQTVADSVDNNNKDAEERQARELKANL-----HPLKNKFVFWYTRRTPGVR 59
             D  +++ N+TQ   +  +   +D  +  ++  KA +     HPL+  + FWY+RRTPG  
Sbjct:    15 DHDQNEENSTQKDGEK-EKTERDKSQSSSKR-KAVVPGPAEHPLQYNYTFWYSRRTPGRP 72

Query:    60 TQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG 118
             T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NG
Sbjct:    73 TSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNG 132

Query:   119 GKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 175
             GKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD
Sbjct:   133 GKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASD 189

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FK59	IF4E5_ARATH	No assigned EC number	0.7182	0.9723	0.7963	yes	no
A3RCV9	IF4E3_WHEAT	No assigned EC number	0.8445	0.8121	0.6336	N/A	no
Q10NQ9	IF4E3_ORYSJ	No assigned EC number	0.8263	0.7900	0.6299	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025466001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (225 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019025001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (1577 aa)						•	•		0.854
	GSVIVG00017187001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (794 aa)					•	•	•		0.850
	GSVIVG00023929001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (269 aa)				•		•			0.432
	GSVIVG00033547001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (333 aa)					•	•			0.427

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
pfam01652	162	pfam01652, IF4E, Eukaryotic initiation factor 4E	2e-69
COG5053	217	COG5053, CDC33, Translation initiation factor 4E (	3e-31
PTZ00040	233	PTZ00040, PTZ00040, translation initiation factor	1e-17

>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E

 Score =  207 bits (529), Expect = 2e-69
 Identities = 76/138 (55%), Positives = 94/138 (68%), Gaps = 2/138 (1%)

Query: 42  PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHL 101
           PL+NK+  WY RR PG      YEDN+K I  F TVE FW  Y ++ RPS LP  +D HL
Sbjct: 1   PLQNKWTLWYDRRPPG-DKSKDYEDNLKPIGTFDTVEDFWRLYNNIPRPSKLPLGSDYHL 59

Query: 102 FKEGIRPLWEDSANCNGGKWIIRFKK-VVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR 160
           FK+GI+P+WED AN NGGKW IR  K     RFWE+L+LAL+G+Q D  D ICG VLS+R
Sbjct: 60  FKKGIKPMWEDPANKNGGKWTIRLPKSQNLDRFWEELLLALIGEQFDESDEICGVVLSVR 119

Query: 161 FNEDILSVWNRNASDHQV 178
             ED +SVW +NAS+ + 
Sbjct: 120 KKEDKISVWTKNASNEEA 137

Length = 162

>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

 Score =  112 bits (281), Expect = 3e-31
 Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 6/145 (4%)

Query: 39  NLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTD 98
           N HPL   +  W+ +  P      S+ D +K I+ F TVE FW    +++  S LP  +D
Sbjct: 35  NKHPLAFHWTLWFLK--PPEDGLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSD 92

Query: 99  LHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRF---WEDLVLALVGDQLD-YGDNICG 154
            ++F+EGIRP WED AN NGGKW  + K     R    W   +LA +G+ LD  G  I G
Sbjct: 93  YNVFREGIRPEWEDEANMNGGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGG 152

Query: 155 AVLSIRFNEDILSVWNRNASDHQVC 179
            V ++R     L++W RN ++  V 
Sbjct: 153 VVGNMRKGFYKLAIWTRNCNNKDVL 177

Length = 217

>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional

 Score = 77.2 bits (190), Expect = 1e-17
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 24/161 (14%)

Query: 42  PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPS------ 95
           PL  K+V W       +R    Y+D  K +  F +V+ FW  + ++ +PS L +      
Sbjct: 39  PLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIR 98

Query: 96  -PTD--------LHLFKEGIRPLWEDSANCNGGKWIIRFK--KVVSGR---FWEDLVLAL 141
             +D        + +FK+GI+P+WED  N  GG +  RF    V  G+   +W +LVLAL
Sbjct: 99  ESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLAL 158

Query: 142 VGDQLDYGDNICGA----VLSIRFNEDILSVWNRNASDHQV 178
           +G  L++   I G      LS RF    + +W  N  D   
Sbjct: 159 IGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNLGDQSD 199

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
KOG1670	212	consensus Translation initiation factor 4F, cap-bi	100.0
PTZ00040	233	translation initiation factor E4; Provisional	100.0
PF01652	165	IF4E: Eukaryotic initiation factor 4E; InterPro: I	100.0
KOG1669	208	consensus Predicted mRNA cap-binding protein relat	100.0
COG5053	217	CDC33 Translation initiation factor 4E (eIF-4E) [T	100.0
PF08939	243	DUF1917: Domain of unknown function (DUF1917); Int	82.36

>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-52  Score=344.21  Aligned_cols=137  Identities=43%  Similarity=0.869  Sum_probs=130.3

Q ss_pred             CCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCC
Q 030198           39 NLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG  118 (181)
Q Consensus        39 ~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nG  118 (181)
                      ..|||++.|||||..+..+    .+|++.|+.|.+|+|||+||++|++|++||.|+.+++|++||+||+||||||+|++|
T Consensus        33 ~~hpL~~~WTlW~l~~d~~----ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~G  108 (212)
T KOG1670|consen   33 IKHPLQNNWTLWFLKNDRN----KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKNG  108 (212)
T ss_pred             cccccccceeEEeecCCcc----ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccCC
Confidence            5899999999999988642    389999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEecC---CchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          119 GKWIIRFKK---VVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       119 G~w~i~~~k---~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      |||++.+++   +..|.+|.++||+||||+|+++++|||+|+++|+.++|||||++++.+++++
T Consensus       109 GrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~~~  172 (212)
T KOG1670|consen  109 GRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEEAV  172 (212)
T ss_pred             CeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchHHH
Confidence            999999985   4689999999999999999999999999999999999999999999999875

>PTZ00040 translation initiation factor E4; Provisional

Probab=100.00  E-value=5.5e-49  Score=330.35  Aligned_cols=142  Identities=32%  Similarity=0.628  Sum_probs=128.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcc---------------eEEe
Q 030198           38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTD---------------LHLF  102 (181)
Q Consensus        38 ~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~---------------~~lF  102 (181)
                      ...|||+++|||||+.+..+.....+|.++|++|++|+|||+||++|+||++||+|+.+++               ||||
T Consensus        35 ~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lF  114 (233)
T PTZ00040         35 STPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIF  114 (233)
T ss_pred             CCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeee
Confidence            5679999999999998754323345899999999999999999999999999999998874               9999


Q ss_pred             eCCCcccCccCCCCCCcEEEEEecC-----CchHHHHHHHHHHHhhcCCCCCCCeeeEEE----EeeCCCcEEEEecCCC
Q 030198          103 KEGIRPLWEDSANCNGGKWIIRFKK-----VVSGRFWEDLVLALVGDQLDYGDNICGAVL----SIRFNEDILSVWNRNA  173 (181)
Q Consensus       103 K~gI~P~WEDp~N~nGG~w~i~~~k-----~~~~~~We~lvl~~IGe~~~~~~~I~Gvvl----s~R~~~~~IsIW~~~~  173 (181)
                      |+||+||||||+|++||+|+|++++     ..++++|++|||++|||+|+.+++||||+|    |+|++.+||+||++++
T Consensus       115 K~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~~  194 (233)
T PTZ00040        115 KDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNL  194 (233)
T ss_pred             cCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCCC
Confidence            9999999999999999999999964     357899999999999999998999999996    6778899999999999


Q ss_pred             CCcccc
Q 030198          174 SDHQVC  179 (181)
Q Consensus       174 ~~~~~v  179 (181)
                      ++++++
T Consensus       195 ~d~~~~  200 (233)
T PTZ00040        195 GDQSDR  200 (233)
T ss_pred             CCHHHH
Confidence            988764

>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs

Probab=100.00  E-value=2.1e-48  Score=310.31  Aligned_cols=137  Identities=50%  Similarity=0.997  Sum_probs=124.4

Q ss_pred             CCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCCcEE
Q 030198           42 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW  121 (181)
Q Consensus        42 pL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nGG~w  121 (181)
                      ||+++|||||+......+ ..+|.++|++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|++||+|
T Consensus         1 pL~~~Wt~w~~~~~~~~~-~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~   79 (165)
T PF01652_consen    1 PLQNKWTFWYDKKQKNSK-SDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRW   79 (165)
T ss_dssp             EEEEEEEEEEEECCCCCT-TSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEE
T ss_pred             CcCCEEEEEEEecCCCCc-hhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEE
Confidence            799999999996544333 3589999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCC---chHHHHHHHHHHHhhcCCCCC-CCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          122 IIRFKKV---VSGRFWEDLVLALVGDQLDYG-DNICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       122 ~i~~~k~---~~~~~We~lvl~~IGe~~~~~-~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      +|++++.   .++++|++|||++|||+|+.. ++||||++|+|++.++|+||++++++++.+
T Consensus        80 ~i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~  141 (165)
T PF01652_consen   80 IIRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQ  141 (165)
T ss_dssp             EEEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHH
T ss_pred             EEEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCHHHH
Confidence            9999998   899999999999999999865 899999999999999999999999887543

eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....

>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-47  Score=307.15  Aligned_cols=154  Identities=60%  Similarity=1.074  Sum_probs=144.0

Q ss_pred             ChHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeC
Q 030198           25 NKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKE  104 (181)
Q Consensus        25 ~~~~~~~~~~~~~~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~  104 (181)
                      +....++.++.+..+.|||++..+|||..+.++..+ .+|++.+++||+|.|||+||++|.|+.+|+.|+...++||||+
T Consensus        14 n~~s~~r~a~v~~d~dh~l~y~~t~~y~~r~~Gv~~-qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKe   92 (208)
T KOG1669|consen   14 NSVSEERRARVLMDMDHPLQYVYTFWYERRTPGVSK-QSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKE   92 (208)
T ss_pred             cchhhhhccccCCCCCCcceEEEEEEEEecCCCCCh-hhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhc
Confidence            344455666777788999999999999999888764 5999999999999999999999999999999999999999999


Q ss_pred             CCcccCccCCCCCCcEEEEEecCCchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          105 GIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       105 gI~P~WEDp~N~nGG~w~i~~~k~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      ||+|+|||++|.|||+|+|+++|..+.++||+|||+++||+|..+++|||+|+|+|.++++||||++++++..++
T Consensus        93 GIkPvWED~aN~nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta~~  167 (208)
T KOG1669|consen   93 GIKPVWEDKANCNGGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTADT  167 (208)
T ss_pred             cCcccccCcCCCCCCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcchhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998764

>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.8e-40  Score=267.61  Aligned_cols=139  Identities=37%  Similarity=0.725  Sum_probs=127.8

Q ss_pred             CCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCC
Q 030198           38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN  117 (181)
Q Consensus        38 ~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~n  117 (181)
                      -..|||+..|||||..++..  +.+.|.+.|+.|++|+|||+||.+.++|+.++.||..++|++||+||+|+|||++|++
T Consensus        34 ~~~hpl~~~wtlw~l~p~e~--g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~  111 (217)
T COG5053          34 MNKHPLAFHWTLWFLKPPED--GLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMN  111 (217)
T ss_pred             hhcCccccceEEEEecCCcc--chhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccCC
Confidence            34799999999999988743  2346999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCC---chHHHHHHHHHHHhhcCCCC-CCCeeeEEEEeeCCCcEEEEecCCCCCccc
Q 030198          118 GGKWIIRFKKV---VSGRFWEDLVLALVGDQLDY-GDNICGAVLSIRFNEDILSVWNRNASDHQV  178 (181)
Q Consensus       118 GG~w~i~~~k~---~~~~~We~lvl~~IGe~~~~-~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~  178 (181)
                      ||+|.+.+++.   ..+++|...++++||++|+. +.+|||||++.|++.+||+||++++.+.+.
T Consensus       112 Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dv  176 (217)
T COG5053         112 GGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDV  176 (217)
T ss_pred             CCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHH
Confidence            99999999865   36789999999999999975 678999999999999999999999988765

>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins

Probab=82.36  E-value=3.3  Score=35.53  Aligned_cols=58  Identities=17%  Similarity=0.327  Sum_probs=40.3

Q ss_pred             CCcEEEEEecCCchHHHHHHHHHHHhhcCCCCCCCeeeEEEEe------eCCCcEEEEecCCCCCcccc
Q 030198          117 NGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSI------RFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       117 nGG~w~i~~~k~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~------R~~~~~IsIW~~~~~~~~~v  179 (181)
                      --|+|+|-+++..++.+|..+.-+++.+.|.     +++-|+.      ..+...|.|.+.|..+.+.|
T Consensus       149 ~sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV  212 (243)
T PF08939_consen  149 TSGKWMLFPPPDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDV  212 (243)
T ss_dssp             --EEEEEEE-TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHH
T ss_pred             ccceeEEEcCHHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHH
Confidence            3799999999999999999999999987763     3445554      12346799999999988765

; PDB: 1ZTP_B 2Q4K_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
2jgb_A	195	Structure Of Human Eif4e Homologous Protein 4ehp Wi		2e-45
2idv_A	177	Crystal Structure Of Wheat C113s Mutant Eif4e Bound		2e-27
2idr_A	177	Crystal Structure Of Translation Initiation Factor		6e-27
4axg_A	248	Structure Of Eif4e-Cup Complex Length = 248		2e-25
2wmc_A	178	Crystal Structure Of Eukaryotic Initiation Factor 4		5e-25
3m93_A	189	Complex Crystal Structure Of Ascaris Suum Eif4e-3 W		4e-23
2w97_B	217	Crystal Structure Of Eif4e Bound To Glycerol And Ei		5e-23
4dt6_A	240	Co-Crystal Structure Of Eif4e With Inhibitor Length		9e-23
1ipb_A	217	Crystal Structure Of Eukaryotic Initiation Factor 4		1e-22
1ej1_A	190	Cocrystal Structure Of The Messenger Rna 5' Cap-Bin		1e-22
1wkw_A	191	Crystal Structure Of The Ternary Complex Of Eif4e-M		2e-22
1ap8_A	213	Translation Initiation Factor Eif4e In Complex With		2e-21
1rf8_A	213	Solution Structure Of The Yeast Translation Initiat		2e-20
4b6v_A	207	The Third Member Of The Eif4e Family Represses Gene		5e-20
3hxg_A	189	Crystal Structure Of Schistsome Eif4e Complexed Wit		1e-16

>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp Length = 195

Iteration: 1
 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 103/137 (75%), Gaps = 1/137 (0%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
           HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D 
Sbjct: 15  HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDF 74
Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSI 159
           HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+
Sbjct: 75  HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSV 134
Query: 160 RFNEDILSVWNRNASDH 176
           RF EDI+S+WN+ ASD 
Sbjct: 135 RFQEDIISIWNKTASDQ 151

>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7- Methyl-Gdp Length = 177

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N + FW+     G   Q ++   I  I  FSTVE FW  Y ++  PS L    D H
Sbjct: 2   HPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR 160
            FK  I P WED  + NGGKW I   +  S  FW   +LA++G+Q D+GD ICGAV+S+R
Sbjct: 61  CFKNKIEPKWEDPISANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120
Query: 161 FNEDILSVWNRNASD 175
             ++ +++W +NA++
Sbjct: 121 QKQERVAIWTKNAAN 135

>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e From Wheat Length = 177

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N + FW+     G   Q ++   I  I  FSTVE FW  Y ++  PS L    D H
Sbjct: 2   HPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR 160
            FK  I P WED    NGGKW I   +  S  FW   +LA++G+Q D+GD ICGAV+S+R
Sbjct: 61  CFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120
Query: 161 FNEDILSVWNRNASD 175
             ++ +++W +NA++
Sbjct: 121 QKQERVAIWTKNAAN 135

>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL N +  WY           S+ED   +I  F TVE FW  Y H+  PS +   +D  
Sbjct: 70  HPLMNVWTLWYLEND----RSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 125
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSG---RFWEDLVLALVGDQLDYGDNICGAVL 157
           LFK+ IRP+WED+AN  GG+W+I   K         W D++L L+G+  D+ D ICGAV+
Sbjct: 126 LFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVI 185
Query: 158 SIRFNEDILSVWNRNASDHQVC 179
           +IR   + +S+W  + ++ +  
Sbjct: 186 NIRGKSNKISIWTADGNNEEAA 207

>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum Length = 178

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Query: 41  HPLKNKFVFWYTRRTPGVRT-QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
           H L+N + FW+   TP  ++ Q ++  +++ I  FSTVE FW  Y ++  P  L    D 
Sbjct: 3   HLLENSWTFWFD--TPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSI 159
           + FK  I P WED    NGGKW   + K  S   W   +LA++G+Q D+GD ICGAV+++
Sbjct: 61  YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 120
Query: 160 RFNEDILSVWNRNASD 175
           R   + +S+W +NAS+
Sbjct: 121 RGRAEKISIWTKNASN 136

>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 9/138 (6%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+  +  WY +          +ED +K++  F TVE FW  Y H+   S L   +D +
Sbjct: 3   HPLQCHWALWYLK----ADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYY 58
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGR----FWEDLVLALVGDQL-DYGDNICGA 155
           LFKEGI+P+WED  N  GG+W++   K    +    +W +L++A++G+Q  D G+ ICGA
Sbjct: 59  LFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGA 118
Query: 156 VLSIRFNEDILSVWNRNA 173
           V+++R   D +S+W R++
Sbjct: 119 VVNVRQKGDKVSLWTRDS 136

>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ ++        +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 37  HPLQNRWALWFFKKDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 92
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGA 155
           LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+  D Y D++CGA
Sbjct: 93  LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 152
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
           V+++R   D +++W     NR A  H
Sbjct: 153 VVNVRAKGDKIAIWTTECENREAVTH 178

>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240

Iteration: 1
 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 60  HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 115
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGA 155
           LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+  D Y D++CGA
Sbjct: 116 LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 175
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
           V+++R   D +++W     NR A  H
Sbjct: 176 VVNVRAKGDKIAIWTTECENREAVTH 201

>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 37  HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 92
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGA 155
           LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+  D Y D++CGA
Sbjct: 93  LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 152
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
           V+++R   D +++W     NR A  H
Sbjct: 153 VVNVRAKGDKIAIWTTECENREAVTH 178

>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 10  HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 65
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGA 155
           LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+   DY D++CGA
Sbjct: 66  LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 125
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
           V+++R   D +++W     NR+A  H
Sbjct: 126 VVNVRAKGDKIAIWTTECENRDAVTH 151

>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 11  HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 66
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGA 155
           LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+  D Y D++CGA
Sbjct: 67  LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 126
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
           V+++R   D +++W     NR A  H
Sbjct: 127 VVNVRAKGDKIAIWTTECENREAVTH 152

>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL  K+  WYT+  P V    S+ D ++ +  F TVE FW    ++  P  LP  +D H
Sbjct: 37  HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 101 LFKEGIRPLWEDSANCNGGKWI--IRFKKVVSGRFWEDLVLALVGDQLDYGDN-ICGAVL 157
           +F+  +RP WED AN  GGKW   +R K       W   +LA++G+ +D  D+ I G VL
Sbjct: 95  VFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVL 154
Query: 158 SIRFNEDILSVWNRN 172
           SIR   +  ++W ++
Sbjct: 155 SIRKGGNKFALWTKS 169

>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL  K+  WYT+  P V    S+ D ++ +  F TVE FW    ++  P  LP  +D H
Sbjct: 37  HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRF--KKVVSGRFWEDLVLALVGDQLDYGDN-ICGAVL 157
           +F+  +RP WED AN  GGKW  +   K       W   +LA++G+ +D  D+ I G VL
Sbjct: 95  VFRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIGETIDEDDSQINGVVL 154
Query: 158 SIRFNEDILSVWNR 171
           SIR   +  ++W +
Sbjct: 155 SIRKGGNKFALWTK 168

>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 42  PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHL 101
           PL + + FW  R  PG  T      N+KKI    TV+ FW  Y ++   + LP     HL
Sbjct: 31  PLHSPWTFWLDRSLPGA-TAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHL 89
Query: 102 FKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLD----YGDNICGAVL 157
            +   RPLWE+ +N  GG W ++  K  +   W++L+LA +G+Q        D I G  +
Sbjct: 90  MRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSV 149
Query: 158 SIRFNEDILSVWNRNAS 174
           S+R  ED++ VWN NAS
Sbjct: 150 SVRDREDVVQVWNVNAS 166

>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL++ + ++  +     R    +++ ++K+  FST+E FW    H  RP  +    DL+
Sbjct: 10  HPLQDSWSYYLFQ----FRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRF-WEDLVLALVGDQLDYGD---NICGAV 156
           +FK  I P WED  N NGG+W+I         F W++L++ L+G   D  +    ICGAV
Sbjct: 66  MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 157 LSIRFNEDILSVW 169
              R     LSVW
Sbjct: 126 FQPRSRGSKLSVW 138
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	3e-51
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	1e-46
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	3e-45
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	2e-44
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	3e-43
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	6e-43
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	7e-43

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177

 Score =  161 bits (409), Expect = 3e-51
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N + FW+       R   ++   I  I  FSTVE FW  Y ++  PS L    D H
Sbjct: 2   HPLENAWTFWFDNPQGKSRQV-AWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR 160
            FK  I P WED    NGGKW I   +  S  FW   +LA++G+Q D+GD ICGAV+S+R
Sbjct: 61  CFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120

Query: 161 FNEDILSVWNRNASD 175
             ++ +++W +NA++
Sbjct: 121 QKQERVAIWTKNAAN 135

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195

 Score =  150 bits (380), Expect = 1e-46
 Identities = 78/136 (57%), Positives = 103/136 (75%), Gaps = 1/136 (0%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
           HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D 
Sbjct: 15  HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDF 74

Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSI 159
           HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+
Sbjct: 75  HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSV 134

Query: 160 RFNEDILSVWNRNASD 175
           RF EDI+S+WN+ ASD
Sbjct: 135 RFQEDIISIWNKTASD 150

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217

 Score =  147 bits (372), Expect = 3e-45
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 12  NNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKI 71
                   + +    ++ +  A       HPL+N++  W+ +         +++ N++ I
Sbjct: 8   TTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKS----KTWQANLRLI 63

Query: 72  VDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSG 131
             F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K    
Sbjct: 64  SKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRR 123

Query: 132 ----RFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASD 175
               RFW + +L L+G+   DY D++CGAV+++R   D +++W     +
Sbjct: 124 SDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECEN 172

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189

 Score =  144 bits (365), Expect = 2e-44
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 8/139 (5%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL++ + ++  +          +++ ++K+  FST+E FW    H  RP  +    DL+
Sbjct: 10  HPLQDSWSYYLFQFRKA----LDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRF-KKVVSGRFWEDLVLALVGDQLDY---GDNICGAV 156
           +FK  I P WED  N NGG+W+I    +      W++L++ L+G   D       ICGAV
Sbjct: 66  MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125

Query: 157 LSIRFNEDILSVWNRNASD 175
              R     LSVW  + ++
Sbjct: 126 FQPRSRGSKLSVWLTSDNE 144

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213

 Score =  142 bits (359), Expect = 3e-43
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 8/175 (4%)

Query: 4   TDKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTS 63
            ++         +V D+         +    ++K   HPL  K+  WYT+  P V    S
Sbjct: 3   VEEVSKKFEENVSVDDTTATPKTVLSDSAHFDVK---HPLNTKWTLWYTK--PAVDKSES 57

Query: 64  YEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWII 123
           + D ++ +  F TVE FW    ++  P  LP  +D H+F+  +RP WED AN  GGKW  
Sbjct: 58  WSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSF 117

Query: 124 RFKK--VVSGRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASD 175
           + +         W   +LA++G+ +D     I G VLSIR   +  ++W ++   
Sbjct: 118 QLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDK 172

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190

 Score =  141 bits (355), Expect = 6e-43
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 9/140 (6%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 10  HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 65

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSG----RFWEDLVLALVGDQL-DYGDNICGA 155
           LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+   DY D++CGA
Sbjct: 66  LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 125

Query: 156 VLSIRFNEDILSVWNRNASD 175
           V+++R   D +++W     +
Sbjct: 126 VVNVRAKGDKIAIWTTECEN 145

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189

 Score =  140 bits (354), Expect = 7e-43
 Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 9/145 (6%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+  +  WY +          +ED +K++  F TVE FW  Y H+   S L   +D +
Sbjct: 3   HPLQCHWALWYLKAD----RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYY 58

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSG----RFWEDLVLALVGDQL-DYGDNICGA 155
           LFKEGI+P+WED  N  GG+W++   K         +W +L++A++G+Q  D G+ ICGA
Sbjct: 59  LFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGA 118

Query: 156 VLSIRFNEDILSVWNRNASDHQVCD 180
           V+++R   D +S+W R++    V  
Sbjct: 119 VVNVRQKGDKVSLWTRDSLKDDVNL 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	100.0
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	100.0
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	100.0
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	100.0
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	100.0
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	100.0
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	100.0
4axg_A	248	Eukaryotic translation initiation factor 4E; 4E-BP	100.0
1ztp_A	251	Basophilic leukemia expressed protein BLES03; HS.4	98.73

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*

Probab=100.00  E-value=4.6e-54  Score=347.53  Aligned_cols=139  Identities=40%  Similarity=0.826  Sum_probs=131.3

Q ss_pred             CCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCCc
Q 030198           40 LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGG  119 (181)
Q Consensus        40 ~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nGG  119 (181)
                      .|||+++|||||+.+..+.+ ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus         1 ~HpL~~~Wt~W~~~~~~~~~-~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG   79 (177)
T 2idr_A            1 AHPLENAWTFWFDNPQGKSR-QVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGG   79 (177)
T ss_dssp             CCEEEEEEEEEEECTTCSSC-EEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCE
T ss_pred             CCCCCCeEEEEEEcCCCCCc-ccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCC
Confidence            59999999999998764333 45899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          120 KWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       120 ~w~i~~~k~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      +|+|+++|..++++|++|||++|||+|+.+++|||||+|+|+++++|+||++++++++++
T Consensus        80 ~w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~  139 (177)
T 2idr_A           80 KWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQ  139 (177)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCHHHH
T ss_pred             EEEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCHHHH
Confidence            999999999999999999999999999988999999999999999999999999988764

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A

Probab=100.00  E-value=3.4e-53  Score=347.07  Aligned_cols=144  Identities=53%  Similarity=1.069  Sum_probs=134.0

Q ss_pred             ccCCCCCCCCceEEEEEcCCCCC-CCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCC
Q 030198           36 LKANLHPLKNKFVFWYTRRTPGV-RTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA  114 (181)
Q Consensus        36 ~~~~~hpL~~~WtfW~~~~~~~~-~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~  114 (181)
                      .....|||+++|||||+.+.++. ....+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus        10 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~   89 (195)
T 2jgb_A           10 PGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA   89 (195)
T ss_dssp             CCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTT
T ss_pred             CCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCC
Confidence            45678999999999999875432 23458999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEecCCchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          115 NCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       115 N~nGG~w~i~~~k~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      |++||+|+|+++|..++++|++|||++|||+|+.+++|||||+|+|.++++|+||++++++++++
T Consensus        90 N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~  154 (195)
T 2jgb_A           90 NKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATT  154 (195)
T ss_dssp             TTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCHHHH
T ss_pred             CCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988754

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*

Probab=100.00  E-value=2.8e-52  Score=340.42  Aligned_cols=138  Identities=36%  Similarity=0.841  Sum_probs=127.7

Q ss_pred             CCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCC
Q 030198           38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN  117 (181)
Q Consensus        38 ~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~n  117 (181)
                      ...|||+++|||||+.+..    ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus         7 ~~~hpL~~~Wt~W~~~~~~----~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~   82 (190)
T 1l8b_A            7 YIKHPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR   82 (190)
T ss_dssp             --CCEEEEEEEEEEEECCS----SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTT
T ss_pred             cccCCCCCeEEEEEEcCCC----ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            4689999999999998753    247999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCc----hHHHHHHHHHHHhhcCC-CCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          118 GGKWIIRFKKVV----SGRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       118 GG~w~i~~~k~~----~~~~We~lvl~~IGe~~-~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      ||+|+|++++..    ++++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++++
T Consensus        83 GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~  149 (190)
T 1l8b_A           83 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAV  149 (190)
T ss_dssp             CEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHH
T ss_pred             CCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHH
Confidence            999999998764    49999999999999999 668899999999999999999999999988764

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*

Probab=100.00  E-value=2.9e-52  Score=340.33  Aligned_cols=143  Identities=29%  Similarity=0.625  Sum_probs=129.8

Q ss_pred             hhcccCCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCcc
Q 030198           33 ARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWED  112 (181)
Q Consensus        33 ~~~~~~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WED  112 (181)
                      |...+...|||+++|||||+++..   + .+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+|||||
T Consensus         2 ~~~~~~~~HpL~~~Wt~W~~~~~~---~-~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED   77 (189)
T 3hxi_A            2 PLGSPEFPHPLQDSWSYYLFQFRK---A-LDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWED   77 (189)
T ss_dssp             -----CCCCEEEEEEEEEEECCCT---T-CCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTS
T ss_pred             CCCCCCccCCCCCeEEEEEECCCC---c-cChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCC
Confidence            345678899999999999998653   2 479999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecCC-chHHHHHHHHHHHhhcCC-CCCCC--eeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          113 SANCNGGKWIIRFKKV-VSGRFWEDLVLALVGDQL-DYGDN--ICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       113 p~N~nGG~w~i~~~k~-~~~~~We~lvl~~IGe~~-~~~~~--I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      |+|++||+|+|+++|. .++++|++|||++|||+| +.+++  |||||+|+|+++++|+||++++++++++
T Consensus        78 ~~N~~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~  148 (189)
T 3hxi_A           78 PKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETI  148 (189)
T ss_dssp             HHHHTCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHH
T ss_pred             cCCCCCcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHH
Confidence            9999999999999987 689999999999999999 55667  9999999999999999999999988764

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*

Probab=100.00  E-value=6.3e-52  Score=344.62  Aligned_cols=138  Identities=36%  Similarity=0.843  Sum_probs=128.8

Q ss_pred             CCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCC
Q 030198           38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN  117 (181)
Q Consensus        38 ~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~n  117 (181)
                      ...|||+++|||||+.+..    ..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus        34 ~~~hpL~~~Wt~W~~~~~~----~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~  109 (217)
T 1ipb_A           34 YIKHPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR  109 (217)
T ss_dssp             TSCCEEEEEEEEEEECCCT----TSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTT
T ss_pred             ccCCCCCCeEEEEEEeCCc----ccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            3579999999999998652    347999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCc----hHHHHHHHHHHHhhcCC-CCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          118 GGKWIIRFKKVV----SGRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       118 GG~w~i~~~k~~----~~~~We~lvl~~IGe~~-~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      ||+|+|+++|..    ++++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++++
T Consensus       110 GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~  176 (217)
T 1ipb_A          110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAV  176 (217)
T ss_dssp             CEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHH
T ss_pred             CCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCHHHH
Confidence            999999999864    49999999999999999 778899999999999999999999999988764

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*

Probab=100.00  E-value=2.3e-51  Score=335.04  Aligned_cols=136  Identities=38%  Similarity=0.848  Sum_probs=127.0

Q ss_pred             CCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCCc
Q 030198           40 LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGG  119 (181)
Q Consensus        40 ~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nGG  119 (181)
                      .|||+++|||||+++..    ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus         2 ~HpL~~~Wt~W~~~~~~----~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GG   77 (189)
T 3m94_A            2 RHPLQCHWALWYLKADR----SKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGG   77 (189)
T ss_dssp             CCEEEEEEEEEEECCCS----SSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred             CCCCCCcEEEEEECCCC----ccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCC
Confidence            69999999999987542    24899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCC----chHHHHHHHHHHHhhcCCC-CCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          120 KWIIRFKKV----VSGRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       120 ~w~i~~~k~----~~~~~We~lvl~~IGe~~~-~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      +|+|+++|.    .++++|++|||++|||+|+ .+++|||||||+|+++++|+||++++++++++
T Consensus        78 kw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~  142 (189)
T 3m94_A           78 RWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVN  142 (189)
T ss_dssp             EEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHH
T ss_pred             EEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCHHHH
Confidence            999999875    4699999999999999994 68999999999999999999999999988754

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*

Probab=100.00  E-value=3.1e-51  Score=339.63  Aligned_cols=139  Identities=34%  Similarity=0.737  Sum_probs=127.3

Q ss_pred             cCCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCC
Q 030198           37 KANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANC  116 (181)
Q Consensus        37 ~~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~  116 (181)
                      ....|||+++|||||+.+..  ....+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus        33 ~~~~hpL~~~Wt~W~~~~~~--~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~  110 (213)
T 1ap8_A           33 FDVKHPLNTKWTLWYTKPAV--DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANA  110 (213)
T ss_dssp             CCCSSEEEEEEEEEEECCCG--GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTT
T ss_pred             CCCccccCCcEEEEEEcCCc--ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCC
Confidence            34789999999999998764  1235799999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEec--CCchHHHHHHHHHHHhhcCCCCCC-CeeeEEEEeeCCCcEEEEecCCCCCccc
Q 030198          117 NGGKWIIRFK--KVVSGRFWEDLVLALVGDQLDYGD-NICGAVLSIRFNEDILSVWNRNASDHQV  178 (181)
Q Consensus       117 nGG~w~i~~~--k~~~~~~We~lvl~~IGe~~~~~~-~I~Gvvls~R~~~~~IsIW~~~~~~~~~  178 (181)
                      +||||+|+++  +..++++|++|||++|||+|+..+ +|||||+|+|+++++|+||++++ ++++
T Consensus       111 ~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~  174 (213)
T 1ap8_A          111 KGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE-DKEP  174 (213)
T ss_dssp             TSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS-CHHH
T ss_pred             CCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC-CHHH
Confidence            9999999984  347899999999999999998766 99999999999999999999998 6554

>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}

Probab=100.00  E-value=3e-49  Score=334.21  Aligned_cols=141  Identities=38%  Similarity=0.797  Sum_probs=129.0

Q ss_pred             cccCCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCC
Q 030198           35 ELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA  114 (181)
Q Consensus        35 ~~~~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~  114 (181)
                      ......|||+++|||||+.+..    ..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus        64 ~~~~~kHpL~~~WtlW~~~~~~----~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~  139 (248)
T 4axg_A           64 TEHLYKHPLMNVWTLWYLENDR----SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAA  139 (248)
T ss_dssp             --CCCCCEEEEEEEEEEESCSC----CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTT
T ss_pred             cccccCCCCCCeEEEEEeeCCC----ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCcc
Confidence            3445579999999999997643    247999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEecCCc---hHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198          115 NCNGGKWIIRFKKVV---SGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC  179 (181)
Q Consensus       115 N~nGG~w~i~~~k~~---~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v  179 (181)
                      |++||+|+|+++|..   ++++|++|||++|||+|+.+++|||||+|+|+++++|+||++++++++++
T Consensus       140 N~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~  207 (248)
T 4axg_A          140 NKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAA  207 (248)
T ss_dssp             TTTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCHHHH
T ss_pred             CCCccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCHHHH
Confidence            999999999998754   57899999999999999988999999999999999999999999998754

>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A

Probab=98.73  E-value=1.1e-08  Score=86.09  Aligned_cols=61  Identities=18%  Similarity=0.370  Sum_probs=55.0

Q ss_pred             CCCCCCcEEEEEecC-CchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCC---CcEEEEecCCCCCcccc
Q 030198          113 SANCNGGKWIIRFKK-VVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFN---EDILSVWNRNASDHQVC  179 (181)
Q Consensus       113 p~N~nGG~w~i~~~k-~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~---~~~IsIW~~~~~~~~~v  179 (181)
                      +.|..||||+|.+++ ..++++|+++++++|+++      +||++|+.|..   ..+|+||++|..+.+.|
T Consensus       121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV  185 (251)
T 1ztp_A          121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGV  185 (251)
T ss_dssp             HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHH
T ss_pred             HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHH
Confidence            468999999999988 789999999999999764      49999999986   79999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d1l8ba_	182	d.86.1.1 (A:) Translation initiation factor eIF4e	4e-45
d1ap8a_	213	d.86.1.1 (A:) Translation initiation factor eIF4e	4e-43

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  145 bits (366), Expect = 4e-45
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 9/140 (6%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 2   HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 57

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSG----RFWEDLVLALVGDQLD-YGDNICGA 155
           LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+  D Y D++CGA
Sbjct: 58  LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 117

Query: 156 VLSIRFNEDILSVWNRNASD 175
           V+++R   D +++W     +
Sbjct: 118 VVNVRAKGDKIAIWTTECEN 137

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  140 bits (355), Expect = 4e-43
 Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 14/177 (7%)

Query: 2   EITDKKESDINNTQTVADSVDNNNKDAEERQARELKANL-HPLKNKFVFWYTRRTPGVRT 60
           E++ K E ++        SVD+     +   +     ++ HPL  K+  WYT+  P V  
Sbjct: 5   EVSKKFEENV--------SVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTK--PAVDK 54

Query: 61  QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             S+ D ++ +  F TVE FW    ++  P  LP  +D H+F+  +RP WED AN  GGK
Sbjct: 55  SESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGK 114

Query: 121 WIIRF--KKVVSGRFWEDLVLALVGDQLDYGDN-ICGAVLSIRFNEDILSVWNRNAS 174
           W  +   K       W   +LA++G+ +D  D+ I G VLSIR   +  ++W ++  
Sbjct: 115 WSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSED 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1l8ba_	182	Translation initiation factor eIF4e {Mouse (Mus mu	100.0
d1ap8a_	213	Translation initiation factor eIF4e {Baker's yeast	100.0

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-47  Score=308.26  Aligned_cols=135  Identities=36%  Similarity=0.872  Sum_probs=125.1

Q ss_pred             CCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCCc
Q 030198           40 LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGG  119 (181)
Q Consensus        40 ~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nGG  119 (181)
                      .|||+++|||||+.+..   + .+|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+|+||||+|++||
T Consensus         1 kHpL~~~Wt~w~~~~~~---~-~~~~~~~~~i~~f~tvE~Fw~~~~~i~~~~~l~~~~~~~lFk~gI~P~WED~~N~~GG   76 (182)
T d1l8ba_           1 KHPLQNRWALWFFKNDK---S-KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGG   76 (182)
T ss_dssp             CCEEEEEEEEEEEECCS---S-SCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCE
T ss_pred             CCCCCCeEEEEEEeCCC---C-chhhhcceEEEEEcCHHHHHHHHHcCCChHHCCccceEEEEecCccCCCCCcccCCCC
Confidence            49999999999998653   2 4799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEec----CCchHHHHHHHHHHHhhcCCC-CCCCeeeEEEEeeCCCcEEEEecCCCCCccc
Q 030198          120 KWIIRFK----KVVSGRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASDHQV  178 (181)
Q Consensus       120 ~w~i~~~----k~~~~~~We~lvl~~IGe~~~-~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~  178 (181)
                      +|+|+++    +..++.+|++|||++|||+|. ..++||||++|+|++.++|+||++++++++.
T Consensus        77 ~~~~~i~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~~~~~  140 (182)
T d1l8ba_          77 RWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDA  140 (182)
T ss_dssp             EEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHH
T ss_pred             EEEEEECcccccchHHHHHHHHHHHHHhcccccCCCeeccEEEEecCCCcEEEEEeCCCccHHH
Confidence            9999996    456899999999999999995 4678999999999999999999999988765

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-46  Score=308.28  Aligned_cols=137  Identities=33%  Similarity=0.729  Sum_probs=124.0

Q ss_pred             CCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCC
Q 030198           39 NLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG  118 (181)
Q Consensus        39 ~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nG  118 (181)
                      ..|||+++|||||+.+..+.  ..+|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+|+||||+|++|
T Consensus        35 ~kHpL~~~Wt~wy~~~~~~~--~~~y~~~l~~I~~f~TvE~Fw~~~~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nG  112 (213)
T d1ap8a_          35 VKHPLNTKWTLWYTKPAVDK--SESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKG  112 (213)
T ss_dssp             CSSEEEEEEEEEEECCCGGG--TSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTTTS
T ss_pred             cCCcCCCcEEEEEEcCCCCc--ccchhhhceEEEEEccHHHHHHHHHhCCCHHHCCcccEEEEEecCccCCCCCcccCCC
Confidence            36999999999999865322  2479999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEecCC--chHHHHHHHHHHHhhcCCCC-CCCeeeEEEEeeCCCcEEEEecCCCCCcc
Q 030198          119 GKWIIRFKKV--VSGRFWEDLVLALVGDQLDY-GDNICGAVLSIRFNEDILSVWNRNASDHQ  177 (181)
Q Consensus       119 G~w~i~~~k~--~~~~~We~lvl~~IGe~~~~-~~~I~Gvvls~R~~~~~IsIW~~~~~~~~  177 (181)
                      |+|+|++++.  .++++|++|||++|||+|.. .+.||||++|+|++.++|+||+++.+.+.
T Consensus       113 G~~~~~i~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~~~~  174 (213)
T d1ap8a_         113 GKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEP  174 (213)
T ss_dssp             EEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSSCHHH
T ss_pred             CEEEEEEccCCCcHHHHHHHHHHHHHhcccccCCCEEeeEEEEecCCceEEEEEccCCchhH
Confidence            9999999764  57899999999999999964 45799999999999999999999876543