Citrus Sinensis ID: 030214

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIETAL
ccccccccccccccEEEEEEcccccccccccccEEEEcccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccEEEccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHc
ccccccccccccccEEEEEEccEEEEEEcccccEEEEcccHHcccccccccHHHHcccHHHHHHHHHHHHHccccccccccEEEEcccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHEcc
mtfkvqtlsfstktslkiskgdisrwcvdrssdaivsptneiLLLGGFTAAAIheaagpdlqkacyqipeaqprvrcppgearitpgfklpvshvihtvgpvfnfhcnpeDILRSAYKNCLSvgkanniqyiafpaiscgVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIETAL
mtfkvqtlsfstktslkiskgdisrwCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIETAL
MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIETAL
***************LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLI****
************KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIETAL
MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIETAL
*****QTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIETAL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIETAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query181 2.2.26 [Sep-21-2011]
Q8P5Z8179 Macro domain-containing p yes no 0.668 0.675 0.468 2e-23
Q8PHB6179 Macro domain-containing p yes no 0.668 0.675 0.460 5e-23
Q87JZ5170 Macro domain-containing p yes no 0.679 0.723 0.429 1e-21
Q9HXU7173 Macro domain-containing p yes no 0.651 0.682 0.441 3e-21
Q88SK6172 Macro domain-containing p yes no 0.640 0.674 0.448 1e-20
B4T2X8179 O-acetyl-ADP-ribose deace yes no 0.674 0.681 0.457 2e-20
P67341179 O-acetyl-ADP-ribose deace yes no 0.674 0.681 0.457 2e-20
P67342179 O-acetyl-ADP-ribose deace N/A no 0.674 0.681 0.457 2e-20
B5F961179 O-acetyl-ADP-ribose deace yes no 0.674 0.681 0.457 3e-20
B7LT90177 O-acetyl-ADP-ribose deace yes no 0.679 0.694 0.430 8e-20
>sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC3184 PE=4 SV=1 Back     alignment and function desciption
 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 77/128 (60%), Gaps = 7/128 (5%)

Query: 16  LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
           +++ +GDI++  VD     IV+  NE LL GG    AIH AAGP L +AC  +PE +P V
Sbjct: 3   IEVWQGDITQLDVD----VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGV 58

Query: 76  RCPPGEARITPGFKLPVSHVIHTVGPVF--NFHCNPEDILRSAYKNCLSVGKANNIQYIA 133
           RCP GE RIT GF L   H+ HTVGPV+    H  PE  L + Y   L + +   +  IA
Sbjct: 59  RCPTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPEQ-LANCYWQSLKLAEQMMLHSIA 117

Query: 134 FPAISCGV 141
           FPAISCG+
Sbjct: 118 FPAISCGI 125

Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) (taxid: 190485)
>sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) GN=XAC3343 PE=4 SV=2 Back     alignment and function description
>sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA0103 PE=4 SV=1 Back     alignment and function description
>sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3693 PE=4 SV=1 Back     alignment and function description
>sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=lp_3408 PE=4 SV=1 Back     alignment and function description
>sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonella newport (strain SL254) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonella agona (strain SL483) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ymdB PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
297736490190 unnamed protein product [Vitis vinifera] 0.740 0.705 0.649 2e-46
225448685231 PREDICTED: macro domain-containing prote 0.740 0.580 0.649 2e-46
449491648247 PREDICTED: macro domain-containing prote 0.723 0.530 0.648 2e-45
449457407247 PREDICTED: macro domain-containing prote 0.723 0.530 0.648 3e-45
255559685269 Protein LRP16, putative [Ricinus communi 0.729 0.490 0.636 9e-45
23397339239 unknown protein [Arabidopsis thaliana] 0.740 0.560 0.619 1e-44
297827693256 hypothetical protein ARALYDRAFT_483117 [ 0.740 0.523 0.611 9e-44
357436403233 Appr-1-p processing enzyme family protei 0.729 0.566 0.628 1e-43
30688336257 appr-1-p processing enzyme family protei 0.740 0.521 0.611 1e-43
20196872193 expressed protein [Arabidopsis thaliana] 0.740 0.694 0.611 2e-43
>gi|297736490|emb|CBI25361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 105/134 (78%)

Query: 8   LSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQ 67
           L+ S  +SLKI KGDI++W VD SSDAIV+P NE +L GG    AIH AAGP+L  ACY+
Sbjct: 8   LALSPTSSLKIQKGDITKWFVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELVAACYK 67

Query: 68  IPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKAN 127
           +PE +P +RCP GEARIT GFKLP +HVIHTVGP+++   NPE  L+SAY NCLS+ K N
Sbjct: 68  VPEVRPGIRCPTGEARITQGFKLPAAHVIHTVGPIYDVDSNPEASLKSAYANCLSLAKEN 127

Query: 128 NIQYIAFPAISCGV 141
           N+QYIAFPAISCGV
Sbjct: 128 NVQYIAFPAISCGV 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448685|ref|XP_002280352.1| PREDICTED: macro domain-containing protein VPA0103 [Vitis vinifera] gi|147769460|emb|CAN70345.1| hypothetical protein VITISV_012577 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449491648|ref|XP_004158963.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457407|ref|XP_004146440.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255559685|ref|XP_002520862.1| Protein LRP16, putative [Ricinus communis] gi|223539993|gb|EEF41571.1| Protein LRP16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|23397339|gb|AAK93649.2| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827693|ref|XP_002881729.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] gi|297327568|gb|EFH57988.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357436403|ref|XP_003588477.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|355477525|gb|AES58728.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|388499270|gb|AFK37701.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|30688336|ref|NP_030605.2| appr-1-p processing enzyme family protein [Arabidopsis thaliana] gi|24030242|gb|AAN41297.1| unknown protein [Arabidopsis thaliana] gi|330254759|gb|AEC09853.1| appr-1-p processing enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|20196872|gb|AAB87596.2| expressed protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
TAIR|locus:2061923257 AT2G40600 "AT2G40600" [Arabido 0.734 0.517 0.616 8.4e-42
UNIPROTKB|Q74FT0173 ymdB "O-acetyl-ADP-ribose deac 0.657 0.687 0.446 1.7e-20
TIGR_CMR|GSU_0526173 GSU_0526 "conserved hypothetic 0.657 0.687 0.446 1.7e-20
UNIPROTKB|P0A8D6177 ymdB "O-acetyl-ADP-ribose deac 0.679 0.694 0.423 2.8e-18
UNIPROTKB|Q3AEI4181 CHY_0594 "Putative uncharacter 0.674 0.674 0.412 2.3e-16
TIGR_CMR|CHY_0594181 CHY_0594 "conserved hypothetic 0.674 0.674 0.412 2.3e-16
UNIPROTKB|A1Z1Q3 448 MACROD2 "O-acetyl-ADP-ribose d 0.662 0.267 0.426 3.3e-16
ZFIN|ZDB-GENE-040912-100248 macrod1 "MACRO domain containi 0.646 0.471 0.381 3.7e-16
MGI|MGI:1920149 475 Macrod2 "MACRO domain containi 0.662 0.252 0.419 8.2e-16
ASPGD|ASPL0000035716 374 AN3153 [Emericella nidulans (t 0.569 0.275 0.421 8.7e-16
TAIR|locus:2061923 AT2G40600 "AT2G40600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 82/133 (61%), Positives = 101/133 (75%)

Query:     9 SFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQI 68
             + S  + LKI KGDI++W VD SSDAIV+P NE +L GG    AIH AAGP L+ ACY++
Sbjct:    75 NLSDSSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGPQLRAACYEV 134

Query:    69 PEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANN 128
             PE +P VRCP GEARITPGF LP S VIHTVGP+++   NP++ L ++YKN L V K NN
Sbjct:   135 PEVRPGVRCPTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENN 194

Query:   129 IQYIAFPAISCGV 141
             I+YIAFPAISCG+
Sbjct:   195 IKYIAFPAISCGI 207
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q74FT0 ymdB "O-acetyl-ADP-ribose deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0526 GSU_0526 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8D6 ymdB "O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AEI4 CHY_0594 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0594 CHY_0594 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|A1Z1Q3 MACROD2 "O-acetyl-ADP-ribose deacetylase MACROD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-100 macrod1 "MACRO domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1920149 Macrod2 "MACRO domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035716 AN3153 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9RS39Y2288_DEIRANo assigned EC number0.35080.84530.9yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029446001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (190 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00003012001
RecName- Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-;; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D [...] (153 aa)
•       0.619
GSVIVG00037524001
SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (396 aa)
•       0.586
GSVIVG00019349001
RecName- Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1;; Provides the precursors neces [...] (790 aa)
•       0.563
GSVIVG00006976001
SubName- Full=Chromosome chr1 scaffold_180, whole genome shotgun sequence; (469 aa)
•       0.531
GSVIVG00036606001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (570 aa)
•       0.518
TIL
SubName- Full=Temperature-induced lipocalin (Putative uncharacterized protein) (Chromosome unde [...] (185 aa)
•       0.516
GSVIVG00035677001
RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (401 aa)
•       0.460
GSVIVG00035675001
RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (405 aa)
•       0.455
GSVIVG00034276001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (378 aa)
•       0.452
GSVIVG00027935001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (141 aa)
•       0.439

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
cd02908165 cd02908, Macro_Appr_pase_like, Macro domain, Appr- 2e-46
PRK00431177 PRK00431, PRK00431, RNase III inhibitor; Provision 1e-41
pfam01661117 pfam01661, Macro, Macro domain 3e-37
COG2110179 COG2110, COG2110, Predicted phosphatase homologous 4e-32
smart00506133 smart00506, A1pp, Appr-1"-p processing enzyme 2e-31
cd02907175 cd02907, Macro_Af1521_BAL_like, Macro domain, Af15 5e-30
PRK04143264 PRK04143, PRK04143, hypothetical protein; Provisio 2e-28
cd02906147 cd02906, Macro_1, Macro domain, Unknown family 1 6e-26
cd02749147 cd02749, Macro, Macro domain, a high-affinity ADP- 1e-25
cd02905140 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik 2e-22
cd03330133 cd03330, Macro_2, Macro domain, Unknown family 2 8e-20
cd02903137 cd02903, Macro_BAL_like, Macro domain, BAL_like fa 1e-17
cd02904186 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_l 1e-07
>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family Back     alignment and domain information 
 Score =  149 bits (378), Expect = 2e-46
 Identities = 57/127 (44%), Positives = 77/127 (60%), Gaps = 11/127 (8%)

Query: 16  LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
           ++I +GDI++  VD    AIV+  N  LL GG    AIH AAGP+L + C ++       
Sbjct: 2   IEIIQGDITKLEVD----AIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRG----- 52

Query: 76  RCPPGEARITPGFKLPVSHVIHTVGPVFN-FHCNPEDILRSAYKNCLSVGKANNIQYIAF 134
            CP GEA IT G+ LP  +VIHTVGPV+     N  ++L S Y+N L + + N ++ IAF
Sbjct: 53  -CPTGEAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAF 111

Query: 135 PAISCGV 141
           PAIS GV
Sbjct: 112 PAISTGV 118

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165
>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216634 pfam01661, Macro, Macro domain Back     alignment and domain information
>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme Back     alignment and domain information
>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1 Back     alignment and domain information
>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family Back     alignment and domain information
>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2 Back     alignment and domain information
>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family Back     alignment and domain information
>gnl|CDD|239232 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 181
cd02904186 Macro_H2A_like Macro domain, Macro_H2A_like family 100.0
cd02907175 Macro_Af1521_BAL_like Macro domain, Af1521- and BA 100.0
cd02908165 Macro_Appr_pase_like Macro domain, Appr-1"-pase_li 100.0
PRK00431177 RNase III inhibitor; Provisional 100.0
PRK04143264 hypothetical protein; Provisional 100.0
cd02905140 Macro_GDAP2_like Macro domain, GDAP2_like family. 100.0
COG2110179 Predicted phosphatase homologous to the C-terminal 100.0
cd02906147 Macro_1 Macro domain, Unknown family 1. The macro 100.0
cd02903137 Macro_BAL_like Macro domain, BAL_like family. The 100.0
cd03330133 Macro_2 Macro domain, Unknown family 2. The macro 100.0
cd02900186 Macro_Appr_pase Macro domain, Appr-1"-pase family. 99.97
smart00506133 A1pp Appr-1"-p processing enzyme. Function determi 99.97
KOG2633200 consensus Hismacro and SEC14 domain-containing pro 99.96
cd02749147 Macro Macro domain, a high-affinity ADP-ribose bin 99.96
PF01661118 Macro: Macro domain; InterPro: IPR002589 The Macro 99.95
PRK13341725 recombination factor protein RarA/unknown domain f 99.92
cd02901140 Macro_Poa1p_like Macro domain, Poa1p_like family. 99.88
PHA02595154 tk.4 hypothetical protein; Provisional 99.78
PF14519280 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ 99.01
cd03331152 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam 98.82
PF10154510 DUF2362: Uncharacterized conserved protein (DUF236 97.23
TIGR02452266 conserved hypothetical protein TIGR02452. Members 97.0
COG4295285 Uncharacterized protein conserved in bacteria [Fun 94.1
PHA03033142 hypothetical protein; Provisional 92.04
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family Back     alignment and domain information 
Probab=100.00  E-value=2.8e-46  Score=291.35  Aligned_cols=160  Identities=23%  Similarity=0.353  Sum_probs=146.6

Q ss_pred             eEEecCCcEEEEEeccc--eeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEE
Q 030214            7 TLSFSTKTSLKISKGDI--SRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI   84 (181)
Q Consensus         7 ~~~~~~~~~i~i~~GdI--~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~   84 (181)
                      ++++..|.+|.|++|||  +++++    |+|||+||++|.+++|+++||+++||+++++||+++.+.  .+++++|++++
T Consensus        11 ~~~~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~~~i   84 (186)
T cd02904          11 TKSLFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKS--NGPLEIAGAAV   84 (186)
T ss_pred             chhhcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHh--cCCCCCCCEEE
Confidence            45677899999999999  98877    999999999999999999999999999999999987643  35899999999


Q ss_pred             ecCCCCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc--
Q 030214           85 TPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN--  154 (181)
Q Consensus        85 t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~--  154 (181)
                      |++|+|+||||||+|+|.|+.+ .+++.|++||++||++|++++++|||||+||||++||        |+++|+ +|.  
T Consensus        85 T~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~-~~l~~  162 (186)
T cd02904          85 SQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAIS-SYFVS  162 (186)
T ss_pred             ccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH-HHHHh
Confidence            9999999999999999999765 4678999999999999999999999999999999999        888998 884  


Q ss_pred             ---CCCceEEEEEeCcchHHHHH
Q 030214          155 ---CGFLESFWVELSAKVTTYDM  174 (181)
Q Consensus       155 ---~~l~~V~~v~~~~~~~~~~~  174 (181)
                         +++++|+||+|+++.++.|.
T Consensus       163 ~~~~~l~~I~fv~~~~~~~~~y~  185 (186)
T cd02904         163 TMSSSIKQIYFVLFDSESIGIYV  185 (186)
T ss_pred             cCCCCccEEEEEECCHHHHHHhh
Confidence               35889999999999999984

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family Back     alignment and domain information
>PRK00431 RNase III inhibitor; Provisional Back     alignment and domain information
>PRK04143 hypothetical protein; Provisional Back     alignment and domain information
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family Back     alignment and domain information
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>cd02906 Macro_1 Macro domain, Unknown family 1 Back     alignment and domain information
>cd02903 Macro_BAL_like Macro domain, BAL_like family Back     alignment and domain information
>cd03330 Macro_2 Macro domain, Unknown family 2 Back     alignment and domain information
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family Back     alignment and domain information
>smart00506 A1pp Appr-1"-p processing enzyme Back     alignment and domain information
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family Back     alignment and domain information
>PHA02595 tk Back     alignment and domain information
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A Back     alignment and domain information
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily Back     alignment and domain information
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans Back     alignment and domain information
>TIGR02452 conserved hypothetical protein TIGR02452 Back     alignment and domain information
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PHA03033 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
1spv_A184 Crystal Structure Of The Putative Phosphatase Of Es 4e-19
3q6z_A214 Human Parp14 (Artd8)-Macro Domain 1 In Complex With 7e-15
2x47_A235 Crystal Structure Of Human Macrod1 Length = 235 7e-14
2dx6_A159 Crystal Structure Of Conserved Hypothetical Protein 4e-10
1yd9_A193 1.6a Crystal Structure Of The Non-Histone Domain Of 4e-09
1zr3_A211 Crystal Structure Of The Macro-Domain Of Human Core 6e-09
3v45_A167 Crystal Structure Of De Novo Designed Serine Hydrol 4e-08
4ess_A167 Crystal Structure Of E6dL155R VARIANT OF DE NOVO DE 4e-08
4etk_A167 Crystal Structure Of E6aL130DA155H VARIANT OF DE NO 4e-08
4gvv_A167 Crystal Structure Of De Novo Design Serine Hydrolas 5e-08
4etj_A167 Crystal Structure Of E6h Variant Of De Novo Designe 5e-08
1hjz_A192 Crystal Structure Of Af1521 Protein Containing A Ma 2e-07
2bfr_A192 The Macro Domain Is An Adp-Ribose Binding Module Le 2e-07
4gvw_A199 Three-Dimensional Structure Of The De Novo Designed 2e-07
1vhu_A211 Crystal Structure Of A Putative Phosphoesterase Len 6e-07
1zr5_A214 Crystal Structure Of The Macro-Domain Of Human Core 3e-06
3q71_A221 Human Parp14 (Artd8) - Macro Domain 2 In Complex Wi 1e-04
4gua_A 670 Alphavirus P23pro-Zbd Length = 670 8e-04
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 7/130 (5%)
Query: 13  KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQ 72
           KT + + +GDI++  VD     IV+  N  L  GG    AIH AAGP L  AC ++ + Q
Sbjct: 2   KTRIHVVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQ 57
Query: 73  PRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQY 131
               CP G A IT    LP   V+HTVGPV+      ED +L+ AY N L +  AN+   
Sbjct: 58  G--DCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTS 115
Query: 132 IAFPAISCGV 141
           +AFPAIS GV
Sbjct: 116 VAFPAISTGV 125
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With Adenosine-5- Diphosphoribose Length = 214 Back     alignment and structure
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235 Back     alignment and structure
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8 Length = 159 Back     alignment and structure
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The Histone Variant Macroh2a1.1. Length = 193 Back     alignment and structure
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.1 (Form B) Length = 211 Back     alignment and structure
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium Target Or130 Length = 167 Back     alignment and structure
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED SERINE Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or187 Length = 167 Back     alignment and structure
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO DESIGNED Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or186 Length = 167 Back     alignment and structure
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase Osh55.27, Northeast Structural Genomics Consortium (Nesg) Target Or246 Length = 167 Back     alignment and structure
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or185 Length = 167 Back     alignment and structure
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a Domain Length = 192 Back     alignment and structure
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module Length = 192 Back     alignment and structure
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine Hydrolase 2bfq_3, Northeast Structural Genomics Consortium (Nesg) Target Or248 Length = 199 Back     alignment and structure
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase Length = 211 Back     alignment and structure
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.2 Length = 214 Back     alignment and structure
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With Adenosine-5- Diphosphoribose Length = 221 Back     alignment and structure
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd Length = 670 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 2e-51
1spv_A184 Putative polyprotein/phosphatase; structural genom 3e-51
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 4e-51
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 2e-50
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 5e-48
2x47_A235 Macro domain-containing protein 1; signaling prote 2e-47
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 2e-47
1vhu_A211 Hypothetical protein AF1521; structural genomics, 2e-46
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 1e-44
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 3e-44
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 1e-43
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 2e-43
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 5e-43
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 6e-43
3gqe_A168 Non-structural protein 3; macro domain, X domain, 3e-40
2vri_A174 Non-structural protein 3; RNA replication, nucleot 4e-40
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 4e-22
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 8e-10
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 2e-09
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193 Back     alignment and structure
 Score =  162 bits (412), Expect = 2e-51
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 16  LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
           L +++ DIS     R  + IV PT   + L      A+ +A G +  +   ++ ++Q   
Sbjct: 21  LSLTQSDISHIGSMRV-EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGP- 78

Query: 76  RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135
                EA ++    L    VIH   P +      E+ L    KNCLS  +   ++ +AFP
Sbjct: 79  -LEVAEAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFP 136

Query: 136 AISCGV--------SQIMTHAIK 150
               G         +Q+   AI 
Sbjct: 137 PFPSGRNCFPKQTAAQVTLKAIS 159
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193 Back     alignment and structure
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214 Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159 Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235 Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221 Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211 Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176 Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182 Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193 Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168 Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168 Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168 Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174 Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284 Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Length = 149 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 100.0
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 100.0
1spv_A184 Putative polyprotein/phosphatase; structural genom 100.0
4abl_A183 Poly [ADP-ribose] polymerase 14; transferase, PARP 100.0
2x47_A235 Macro domain-containing protein 1; signaling prote 100.0
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 100.0
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 100.0
1vhu_A211 Hypothetical protein AF1521; structural genomics, 100.0
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 100.0
3gqe_A168 Non-structural protein 3; macro domain, X domain, 100.0
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 100.0
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 100.0
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 100.0
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 100.0
2vri_A174 Non-structural protein 3; RNA replication, nucleot 100.0
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 100.0
4gua_A 670 Non-structural polyprotein; viral precursor polypr 100.0
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 99.96
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 99.96
2fg1_A158 Conserved hypothetical protein BT1257; structural 99.94
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 98.69
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.4e-46  Score=297.37  Aligned_cols=169  Identities=34%  Similarity=0.432  Sum_probs=154.6

Q ss_pred             eeeEEecCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEE
Q 030214            5 VQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI   84 (181)
Q Consensus         5 ~~~~~~~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~   84 (181)
                      +.++.+.++.+|.+++|||+++++    |||||+||+.+.+++|+++||++++|++|++||+++.+.  .+.+++|++++
T Consensus        28 ~~~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~i  101 (214)
T 3q6z_A           28 FSRTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKR--EGRLLPGNATI  101 (214)
T ss_dssp             CEEEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHH--HCCCCTTCEEE
T ss_pred             EEEEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHH--cCCCCCCeEEE
Confidence            457788999999999999999876    999999999999999999999999999999999987643  24799999999


Q ss_pred             ecCCCCCCceEEEeeCCccCCCC--ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc
Q 030214           85 TPGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN  154 (181)
Q Consensus        85 t~~~~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~  154 (181)
                      |++|+|+|+||||+|+|.|+++.  .+.+.|++||++||++|++++++|||||+||||++||        |+++++ +|.
T Consensus       102 T~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~-~fl  180 (214)
T 3q6z_A          102 SKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIK-ENF  180 (214)
T ss_dssp             EECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHH-HHT
T ss_pred             EcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHH-HHH
Confidence            99999999999999999998864  2468999999999999999999999999999999999        788898 884


Q ss_pred             ------CCCceEEEEEeCcchHHHHHHHHHhh
Q 030214          155 ------CGFLESFWVELSAKVTTYDMDLIETA  180 (181)
Q Consensus       155 ------~~l~~V~~v~~~~~~~~~~~~~~~~~  180 (181)
                            +.+++|+||+||++.+++|++.+++.
T Consensus       181 ~~~~~~~~l~~V~fv~~d~~~~~~f~~~l~~~  212 (214)
T 3q6z_A          181 QFKKDGHCLKEIYLVDVSEKTVEAFAEAVKTV  212 (214)
T ss_dssp             SSCC--CCCCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence                  35789999999999999999999874
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Back     alignment and structure
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Back     alignment and structure
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Back     alignment and structure
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Back     alignment and structure
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 181
d1yd9a1188 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt 1e-28
d1spva_172 c.50.1.2 (A:) Hypothetical protein YmbD {Escherich 1e-26
d1vhua_192 c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo 3e-26
d2acfa1168 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA 2e-24
d1njra_264 c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker' 8e-23
d2fg1a1154 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba 1e-16
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (256), Expect = 1e-28
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 20/154 (12%)

Query: 10  FSTKT-----SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKA 64
            STK+      L++ + DI+    D    A+V PTN    +GG   + + +  G +  +A
Sbjct: 5   LSTKSLFLGQKLQVVQADIASIDSD----AVVHPTNTDFYIGGEVGSTLEKKGGKEFVEA 60

Query: 65  CYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVG 124
             ++ +           A ++ G  LP   VIH   PV+       ++L    KNCL++ 
Sbjct: 61  VLELRKKNG--PLEVAGAAVSAGHGLPAKFVIHCNSPVWGSDKCE-ELLEKTVKNCLALA 117

Query: 125 KANNIQYIAFPAISCG--------VSQIMTHAIK 150
               ++ IAFP+I  G         +Q++  AI 
Sbjct: 118 DDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAIS 151
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192 Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168 Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264 Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
d1yd9a1188 Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax 100.0
d1spva_172 Hypothetical protein YmbD {Escherichia coli [TaxId 100.0
d1vhua_192 Hypothetical protein AF1521 {Archaeon Archaeoglobu 100.0
d2acfa1168 Replicase polyprotein 1ab {SARS coronavirus [TaxId 100.0
d1njra_264 Hypothetical protein Ymr087W {Baker's yeast (Sacch 99.95
d2fg1a1154 Hypothetical protein BT1257 {Bacteroides thetaiota 99.89
d1gyta1178 Leucine aminopeptidase (Aminopeptidase A), N-termi 88.01
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.9e-43  Score=273.03  Aligned_cols=166  Identities=23%  Similarity=0.400  Sum_probs=151.2

Q ss_pred             eeEEecCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEe
Q 030214            6 QTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARIT   85 (181)
Q Consensus         6 ~~~~~~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t   85 (181)
                      .+-.+..|.+|+|++|||+++++    |||||++|+.+.+++|++++|++++|++|++||+++.+++  +++++|++++|
T Consensus         6 s~~~~~~~~~i~i~~GDIt~~~~----DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~--~~~~~g~~~vT   79 (188)
T d1yd9a1           6 STKSLFLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKN--GPLEVAGAAVS   79 (188)
T ss_dssp             EEEECTTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH--CSCCTTCEEEE
T ss_pred             cccccccCCEEEEEeCCcCcCCC----CEEEECCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHhc--cccCCCCeeec
Confidence            34456789999999999999876    9999999999999999999999999999999999876543  47889999999


Q ss_pred             cCCCCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc---
Q 030214           86 PGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN---  154 (181)
Q Consensus        86 ~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~---  154 (181)
                      ++|+|+|+||||+++|.|+.+ .+.+.|++||++||+.|++++++|||||+||||.+|+        |+++++ +|.   
T Consensus        80 ~~~~L~~k~IiH~v~P~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~-~fl~~~  157 (188)
T d1yd9a1          80 AGHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAIS-SYFVST  157 (188)
T ss_dssp             ECTTSSSSEEEEECCCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHH-HHHTTC
T ss_pred             ccCCCCceEEeeeccccCCCc-chHHHHHHHHHHHHHHHHHcCCCeEEeccccCCCCCCCHHHHHHHHHHHHH-HHHHhc
Confidence            999999999999999999876 5678999999999999999999999999999999998        788888 873   


Q ss_pred             --CCCceEEEEEeCcchHHHHHHHHHh
Q 030214          155 --CGFLESFWVELSAKVTTYDMDLIET  179 (181)
Q Consensus       155 --~~l~~V~~v~~~~~~~~~~~~~~~~  179 (181)
                        +++++|+||+++++++++|++.|.+
T Consensus       158 ~~~~l~~V~~v~~~~~~~~~f~~~l~k  184 (188)
T d1yd9a1         158 MSSSIKTVYFVLFDSESIGIYVQEMAK  184 (188)
T ss_dssp             TTCCCCEEEEECCSHHHHHHHHHHHTT
T ss_pred             CCCCccEEEEEeCCHHHHHHHHHHHHH
Confidence              4588999999999999999999865
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Escherichia coli, PepA [TaxId: 562]} Back     information, alignment and structure